AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0281840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281840 MtrunA17_Chr2g0296581 91.085 931 57 5 1 921 1 915 0.0 1517
Msa0281840 MtrunA17_Chr4g0052941 41.676 895 355 32 96 921 21 817 1.13e-157 483
Msa0281840 MtrunA17_Chr1g0197481 40.741 135 69 2 795 918 714 848 1.41e-25 114
Msa0281840 MtrunA17_Chr1g0197481 24.542 709 385 23 36 671 16 647 3.90e-19 93.2
Msa0281840 MtrunA17_Chr4g0027771 36.641 131 68 2 801 918 687 815 5.02e-22 102
Msa0281840 MtrunA17_Chr2g0292551 36.508 126 70 1 804 919 610 735 1.04e-18 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281840 AT2G34920.2 30.806 633 293 15 308 920 156 663 1.52e-77 266
Msa0281840 AT1G30860.1 32.834 667 311 19 300 917 146 724 6.17e-76 263
Msa0281840 AT2G34920.1 30.016 633 284 18 308 920 156 649 3.27e-68 240
Msa0281840 AT4G20160.3 40.113 177 94 2 744 920 1046 1210 8.57e-35 144
Msa0281840 AT4G20160.3 41.290 155 70 4 301 450 208 346 3.39e-19 94.0
Msa0281840 AT4G20160.2 40.113 177 94 2 744 920 1048 1212 8.89e-35 144
Msa0281840 AT4G20160.2 41.290 155 70 4 301 450 210 348 3.48e-19 94.0
Msa0281840 AT5G04460.6 41.270 126 64 1 803 918 735 860 2.91e-27 119
Msa0281840 AT5G04460.6 28.972 321 183 10 375 671 361 660 3.34e-13 74.3
Msa0281840 AT5G04460.3 41.270 126 64 1 803 918 735 860 2.91e-27 119
Msa0281840 AT5G04460.3 28.972 321 183 10 375 671 361 660 3.34e-13 74.3
Msa0281840 AT5G04460.1 41.270 126 64 1 803 918 735 860 2.91e-27 119
Msa0281840 AT5G04460.1 28.972 321 183 10 375 671 361 660 3.34e-13 74.3
Msa0281840 AT5G04460.4 41.270 126 64 1 803 918 735 860 2.91e-27 119
Msa0281840 AT5G04460.4 28.972 321 183 10 375 671 361 660 3.34e-13 74.3
Msa0281840 AT2G27950.2 35.762 151 83 3 780 918 688 836 1.06e-22 105
Msa0281840 AT2G27950.3 35.762 151 83 3 780 918 688 836 1.06e-22 105
Msa0281840 AT2G27950.1 35.762 151 83 3 780 918 688 836 1.06e-22 105
Msa0281840 AT4G20160.1 41.290 155 70 4 301 450 208 346 4.23e-19 93.6
Msa0281840 AT4G20160.1 33.103 145 83 3 744 888 1046 1176 7.04e-15 80.1
Msa0281840 AT5G04460.2 28.972 321 183 10 375 671 361 660 4.70e-13 73.9
Msa0281840 AT5G04460.5 28.972 321 183 10 375 671 361 660 5.61e-13 73.6
Msa0281840 AT5G44690.1 48.387 62 32 0 603 664 505 566 6.85e-11 66.6

Find 178 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCTTCCCTTGTTCAATTA+TGG 0.178057 2_3:+17438675 Msa0281840:CDS
CTTCAGATGATGTTGATTTC+TGG 0.190668 2_3:-17439635 None:intergenic
TGTTTGCACCCTTTGGTTAT+TGG 0.218171 2_3:-17441388 None:intergenic
AAGGAACAAGCGTTTGGTTT+TGG 0.220689 2_3:-17437639 None:intergenic
CTGTACTGTATTTCTTTCTT+TGG 0.236514 2_3:-17440018 None:intergenic
GGAAGATCTCCTCAAGAAAA+TGG 0.263129 2_3:+17440852 Msa0281840:CDS
ATTGCGACTTCTTCGCCTTT+TGG 0.264600 2_3:+17438143 Msa0281840:CDS
ACAATAACAATGTTTCTTCT+TGG 0.274224 2_3:+17438348 Msa0281840:CDS
TTGTGTGTTTACTATCTCTT+TGG 0.285465 2_3:-17440069 None:intergenic
TTCCAGGATACAAGTGTTCT+TGG 0.286044 2_3:-17440833 None:intergenic
GAAAGAGTATCTTACTTTAG+AGG 0.290159 2_3:+17442381 Msa0281840:three_prime_UTR
CTCCATTGGAGTGTTTGGTT+TGG 0.290502 2_3:-17438726 None:intergenic
GTCTTCCCTTGTTCAATTAT+GGG 0.293074 2_3:+17438676 Msa0281840:CDS
TCGTGAGATGGTGTCGAATT+TGG 0.295134 2_3:+17438532 Msa0281840:CDS
CGCTCTTCCCAATAGCTTCT+CGG 0.315396 2_3:-17440479 None:intergenic
AACTGCTTTCAGCATAGTTT+TGG 0.321527 2_3:-17440391 None:intergenic
CAAAGTTCTTAATGTTCCTT+TGG 0.332992 2_3:-17438241 None:intergenic
CTCCGACTTTGTCAATTCTA+TGG 0.336013 2_3:-17440168 None:intergenic
AAGTTTCATGACTAAGGATT+TGG 0.352118 2_3:-17442405 None:intergenic
TTCAAACTTTCAAGAGGGTT+TGG 0.353887 2_3:-17438086 None:intergenic
ATTCGCGCCTTCTTGATAGA+TGG 0.358946 2_3:+17438495 Msa0281840:CDS
TTTCTCGACCGAGAAGCTAT+TGG 0.361517 2_3:+17440471 Msa0281840:CDS
TGTGTGTTTACTATCTCTTT+GGG 0.364834 2_3:-17440068 None:intergenic
CAGAGTTCACCTCCATCTTC+TGG 0.365775 2_3:+17439088 Msa0281840:CDS
TTCACTAAGTTTCATGACTA+AGG 0.368348 2_3:-17442411 None:intergenic
GCTCTTTGCTCTGAAAGTTC+TGG 0.370843 2_3:-17439178 None:intergenic
CAATAACAATGTTTCTTCTT+GGG 0.371423 2_3:+17438349 Msa0281840:CDS
ACAAACCTGTTTGCACCCTT+TGG 0.380694 2_3:-17441395 None:intergenic
TTCTCGACCGAGAAGCTATT+GGG 0.381322 2_3:+17440472 Msa0281840:CDS
TTCAAACCTTAGTTGCATAA+TGG 0.382804 2_3:-17439688 None:intergenic
TGGTATCATCAACAACAATA+AGG 0.386293 2_3:+17438427 Msa0281840:CDS
AGCACCTGTATATCTTCATT+TGG 0.389980 2_3:-17440542 None:intergenic
GTCTCCAAGTTCGCACAAAA+AGG 0.393665 2_3:+17439319 Msa0281840:CDS
ACTTGTTCAAAACGAATTAG+AGG 0.402792 2_3:+17439214 Msa0281840:CDS
TGAAATGTGCCAACGATTTA+CGG 0.405058 2_3:+17442274 Msa0281840:CDS
TATATCTTCATTTGGAGAAC+CGG 0.410944 2_3:-17440534 None:intergenic
AAACTGAAAATGGCTTCTTC+TGG 0.411314 2_3:+17438113 Msa0281840:exon
AAGGGTAAATGAGGAGGAGG+AGG 0.412811 2_3:+17440905 Msa0281840:CDS
AACACTAACTCTATCACTTT+CGG 0.419272 2_3:-17439026 None:intergenic
CAATGATTTGCTTATGCAGT+TGG 0.421952 2_3:+17439249 Msa0281840:CDS
TTTGAAGGACCGTTATCATC+AGG 0.422188 2_3:+17438899 Msa0281840:CDS
TTATGCAGTTGGAGCGTGAT+AGG 0.422256 2_3:+17439260 Msa0281840:CDS
GTTTGGCCGATTATCATGAT+AGG 0.423967 2_3:-17441126 None:intergenic
AGTAGTTTGTGTCATGAAAT+CGG 0.425127 2_3:+17440996 Msa0281840:CDS
CTTGATAAAGTTGCTCCATA+TGG 0.430040 2_3:-17441296 None:intergenic
TAGAGAAAGTAGCAAAGTTA+AGG 0.430240 2_3:+17438202 Msa0281840:CDS
CTAATTATAGACAAAGAAAA+CGG 0.433182 2_3:+17437791 Msa0281840:five_prime_UTR
GATACTCTTTCAACTGAGAT+AGG 0.438364 2_3:-17442369 None:intergenic
ACATTGTAATGCACGTGTTA+AGG 0.440126 2_3:-17438274 None:intergenic
CTTGAAAAGTATACGTGAAA+AGG 0.443908 2_3:-17442469 None:intergenic
AAGAGGCTTAACAATTCAAA+TGG 0.444760 2_3:+17438701 Msa0281840:CDS
TGATTGGTAGACGAGGAGTT+TGG 0.452149 2_3:-17441143 None:intergenic
ACAACATGTCTGAAATTGTA+AGG 0.453989 2_3:+17438600 Msa0281840:CDS
AGTCTTCCTATCATGATAAT+CGG 0.455989 2_3:+17441120 Msa0281840:CDS
GATTGTGCAGTAGAAGAGGA+AGG 0.461377 2_3:+17440362 Msa0281840:CDS
TACATCCATCACGATGATTA+CGG 0.464564 2_3:-17438181 None:intergenic
TGACAGTTCCATGCACAATC+TGG 0.465200 2_3:-17440139 None:intergenic
TTCTCCAAATGAAGATATAC+AGG 0.468784 2_3:+17440538 Msa0281840:CDS
TTGTTCAATTATGGGAAAAG+AGG 0.472023 2_3:+17438684 Msa0281840:CDS
GATAGACAATGAAGGGTTGA+TGG 0.476400 2_3:+17440803 Msa0281840:CDS
ATCGTGAAGAGGAGCAAGGA+GGG 0.479809 2_3:+17440946 Msa0281840:CDS
ACTCACAATTGAATGATGAT+TGG 0.480401 2_3:-17441159 None:intergenic
TACCTCGGATGAATGTTCTT+CGG 0.481836 2_3:+17438634 Msa0281840:CDS
TCTTCATTCCCTGATGATAA+CGG 0.482939 2_3:-17438908 None:intergenic
CTTGGAGACAGTTCCACGTT+CGG 0.483022 2_3:-17439305 None:intergenic
GGAAAGGGTAAATGAGGAGG+AGG 0.484249 2_3:+17440902 Msa0281840:CDS
TTTGTTGCTAACAGTCCAAC+TGG 0.486235 2_3:+17438800 Msa0281840:CDS
TTCCAAGAACACTTGTATCC+TGG 0.487761 2_3:+17440831 Msa0281840:CDS
ATATGATATGAGAGGCCATA+TGG 0.488063 2_3:+17441281 Msa0281840:CDS
AGAAGAGGAAAGGGTAAATG+AGG 0.493781 2_3:+17440896 Msa0281840:CDS
GATCTGCCATTATGCAACTA+AGG 0.494103 2_3:+17439682 Msa0281840:CDS
GTTTCTTCTTGGGCTTCAAA+AGG 0.499007 2_3:+17438359 Msa0281840:CDS
CATAACAAGACTGGTAAGAA+AGG 0.500710 2_3:+17442082 Msa0281840:CDS
TCAAGAAGGCGCGAATGTCT+CGG 0.501249 2_3:-17438488 None:intergenic
AGGTTGATGCAGTCTCATAA+AGG 0.501802 2_3:+17440744 Msa0281840:CDS
ATGGAGAAAACAAGTCCAAC+GGG 0.503867 2_3:+17438743 Msa0281840:CDS
TTCGCGCCTTCTTGATAGAT+GGG 0.504320 2_3:+17438496 Msa0281840:CDS
AATAACCAAAGGGTGCAAAC+AGG 0.504704 2_3:+17441390 Msa0281840:CDS
AAGTTGACTCAGTTCTATAC+AGG 0.506085 2_3:+17442131 Msa0281840:CDS
TGAGACATGACAGTTGAGCT+TGG 0.506263 2_3:-17440215 None:intergenic
CGGTAGATGAAGAAGAGGAA+AGG 0.507356 2_3:+17440886 Msa0281840:CDS
GGAGCAAGGAGGGGAGAGCT+TGG 0.509303 2_3:+17440956 Msa0281840:CDS
GGTAGATGAAGAAGAGGAAA+GGG 0.510736 2_3:+17440887 Msa0281840:CDS
ATTCTAATCAATCCTCATCA+TGG 0.512171 2_3:+17441024 Msa0281840:CDS
GAGCTTGGTTAGTAGTAGCT+TGG 0.515718 2_3:+17440971 Msa0281840:CDS
ATCAAGAGATGAGTGAACTA+AGG 0.515850 2_3:+17441313 Msa0281840:CDS
ATGATGAAAATAATTATGAC+TGG 0.518498 2_3:+17440438 Msa0281840:CDS
TGTGTTCAGTTGATCAAAGT+AGG 0.521979 2_3:+17438993 Msa0281840:CDS
AGTTATAGAGACAATGAAGT+TGG 0.524930 2_3:+17441047 Msa0281840:CDS
TAATTATAGACAAAGAAAAC+GGG 0.526773 2_3:+17437792 Msa0281840:five_prime_UTR
TTTCGCGGAAGCCACTAGAA+AGG 0.527381 2_3:-17440713 None:intergenic
CTGAGTCAACTTTCATCTCA+TGG 0.528417 2_3:-17442120 None:intergenic
TAACGAAAATGAGCCATCCT+TGG 0.528953 2_3:+17438451 Msa0281840:CDS
TTATGATTGTGCAGTAGAAG+AGG 0.530927 2_3:+17440358 Msa0281840:CDS
TAGAACGGTAGATGAAGAAG+AGG 0.535676 2_3:+17440881 Msa0281840:CDS
AGAGCAAAGAGCCTTTCCTC+AGG 0.536128 2_3:+17439189 Msa0281840:CDS
TCCCTTAGAACACAACCAAA+AGG 0.536748 2_3:-17438158 None:intergenic
AACGATTTACGGTGGACCAA+TGG 0.536877 2_3:+17442285 Msa0281840:CDS
TCAACCTATCCATTGTTTCG+CGG 0.538140 2_3:-17440728 None:intergenic
GATGATGAGATAGACAATGA+AGG 0.539997 2_3:+17440795 Msa0281840:CDS
GCATGGGGAGCTAAAGAACT+TGG 0.540046 2_3:+17439282 Msa0281840:CDS
AGTTGGAGCGTGATAGGCAT+GGG 0.540435 2_3:+17439266 Msa0281840:CDS
CAGTTGGAGCGTGATAGGCA+TGG 0.543124 2_3:+17439265 Msa0281840:CDS
TAGGAAGACTGAGATTGATA+AGG 0.546626 2_3:-17441107 None:intergenic
GATGTTGATTTCTGGTGTGA+TGG 0.551693 2_3:-17439627 None:intergenic
GAACATTAAGAACTTTGTCA+TGG 0.556261 2_3:+17438247 Msa0281840:CDS
ATTGTGCAGTAGAAGAGGAA+GGG 0.556865 2_3:+17440363 Msa0281840:CDS
CTAAAGAACTTGGCCGAACG+TGG 0.559845 2_3:+17439292 Msa0281840:CDS
GTTTCAACCTTCCTTTCTAG+TGG 0.560956 2_3:+17440702 Msa0281840:CDS
TAGTGGCTTCCGCGAAACAA+TGG 0.562825 2_3:+17440719 Msa0281840:CDS
AGAGGAAAGGGTAAATGAGG+AGG 0.564527 2_3:+17440899 Msa0281840:CDS
AAGAAGTCACATAACAAGAC+TGG 0.565229 2_3:+17442073 Msa0281840:CDS
TGAACAAGTAACCTGAGGAA+AGG 0.566523 2_3:-17439200 None:intergenic
AGACAAAGAAAACGGGAATG+AGG 0.567296 2_3:+17437799 Msa0281840:five_prime_UTR
TCATTGTCATCACCAGAAGA+TGG 0.568059 2_3:-17439100 None:intergenic
ATATACAGGTGCTTCTTCAA+AGG 0.568191 2_3:+17440552 Msa0281840:CDS
TTGAAGGACCGTTATCATCA+GGG 0.568227 2_3:+17438900 Msa0281840:CDS
GGGAAGAGCGGAGGCAAGCA+TGG 0.569370 2_3:+17440492 Msa0281840:CDS
GAAATCAATAAAGAGTTGCA+TGG 0.573388 2_3:+17441335 Msa0281840:CDS
GATTGGGAATCTGATAAGAC+AGG 0.576359 2_3:+17438956 Msa0281840:CDS
CAAAGAAAGAAATACAGTAC+AGG 0.576417 2_3:+17440019 Msa0281840:CDS
AGATGAGAAAGATCGTGAAG+AGG 0.578833 2_3:+17440935 Msa0281840:CDS
TTGTTTGGTCTAAATTGGTG+TGG 0.582058 2_3:-17437668 None:intergenic
CTAATCAACGAAGCCAAGGA+TGG 0.582490 2_3:-17438464 None:intergenic
ATGATGAGATAGACAATGAA+GGG 0.586074 2_3:+17440796 Msa0281840:CDS
TGCGAGACAAGCTCGTGAGA+TGG 0.589919 2_3:+17438520 Msa0281840:CDS
ATAAGACAGGTGATCAGAGT+AGG 0.590816 2_3:+17438969 Msa0281840:CDS
GTGTTTACTATCTCTTTGGG+AGG 0.591816 2_3:-17440065 None:intergenic
GCGGAAGCCACTAGAAAGGA+AGG 0.594096 2_3:-17440709 None:intergenic
TGCATAATGGCAGATCCGTA+TGG 0.595208 2_3:-17439675 None:intergenic
TCTTCGGAGAAATTGAACCT+TGG 0.595298 2_3:+17438650 Msa0281840:CDS
GTTGCACTTGTCACACCCGT+TGG 0.598328 2_3:-17438758 None:intergenic
AGGGACCGTAATCATCGTGA+TGG 0.600040 2_3:+17438176 Msa0281840:CDS
GTTGCAGTTGTACCACCAGT+TGG 0.600262 2_3:-17438815 None:intergenic
AACAGACAAGTACAACCATA+CGG 0.601071 2_3:+17439660 Msa0281840:CDS
CGAGAAGCTATTGGGAAGAG+CGG 0.602957 2_3:+17440480 Msa0281840:CDS
ACAAGTGGCCAGATTGTGCA+TGG 0.603264 2_3:+17440131 Msa0281840:CDS
ATTGGTCCACCGTAAATCGT+TGG 0.604903 2_3:-17442283 None:intergenic
TCGCAGCCCATCTATCAAGA+AGG 0.606356 2_3:-17438502 None:intergenic
GTCTCTATAACTCCATGATG+AGG 0.607032 2_3:-17441036 None:intergenic
ACTTAAATTGTTACGTGGCG+CGG 0.614471 2_3:+17439593 Msa0281840:CDS
TTTGCTGATTTGATCAGCAG+TGG 0.614524 2_3:-17440105 None:intergenic
CGCCATAGAATTGACAAAGT+CGG 0.614709 2_3:+17440166 Msa0281840:CDS
AAGAGGTTCGGAACTAGGAG+AGG 0.614950 2_3:+17438874 Msa0281840:CDS
CTTCGACTTAAATTGTTACG+TGG 0.616038 2_3:+17439588 Msa0281840:CDS
CGGACTAATCAACGAAGCCA+AGG 0.616630 2_3:-17438468 None:intergenic
ATCCAAACCAAACACTCCAA+TGG 0.617112 2_3:+17438724 Msa0281840:CDS
AAGGTAGCAACAATCTTGCA+AGG 0.617645 2_3:+17438378 Msa0281840:CDS
AATGGAGAAAACAAGTCCAA+CGG 0.624046 2_3:+17438742 Msa0281840:CDS
AGAAAATGGAACAGATAGAA+CGG 0.624425 2_3:+17440866 Msa0281840:CDS
CTCCGAAGAACATTCATCCG+AGG 0.625270 2_3:-17438636 None:intergenic
GATCTCATATATGATATGAG+AGG 0.634713 2_3:+17441273 Msa0281840:CDS
AAGCAGTTATGAAGAGATGG+TGG 0.635175 2_3:+17440406 Msa0281840:CDS
CAAATCAGCAAAGACACAAG+TGG 0.635476 2_3:+17440116 Msa0281840:CDS
AGAGGTTCGGAACTAGGAGA+GGG 0.636854 2_3:+17438875 Msa0281840:CDS
GACAATGATCATGAAGGATG+TGG 0.638361 2_3:+17439115 Msa0281840:CDS
TTGTAATGCACGTGTTAAGG+TGG 0.638583 2_3:-17438271 None:intergenic
AAAGATCGTGAAGAGGAGCA+AGG 0.640572 2_3:+17440942 Msa0281840:CDS
GCTTCCGCGAAACAATGGAT+AGG 0.642771 2_3:+17440724 Msa0281840:CDS
TCGTGAAGAGGAGCAAGGAG+GGG 0.649715 2_3:+17440947 Msa0281840:CDS
TGAAAGCAGTTATGAAGAGA+TGG 0.649757 2_3:+17440403 Msa0281840:CDS
TTACTGTGAGGAAACTTCTG+AGG 0.653061 2_3:+17440265 Msa0281840:CDS
GATCGTGAAGAGGAGCAAGG+AGG 0.655065 2_3:+17440945 Msa0281840:CDS
GAAGCTATTGGGAAGAGCGG+AGG 0.656101 2_3:+17440483 Msa0281840:CDS
TTGAAGAGAAACAATCACAA+TGG 0.663855 2_3:+17438407 Msa0281840:CDS
GGTGATGACAATGATCATGA+AGG 0.664896 2_3:+17439109 Msa0281840:CDS
AAGGACATCTAGTTCTACCT+CGG 0.665676 2_3:+17438619 Msa0281840:CDS
GAACAAGGGAAGACGCACCA+AGG 0.669380 2_3:-17438667 None:intergenic
GTTGGAGCGTGATAGGCATG+GGG 0.671128 2_3:+17439267 Msa0281840:CDS
TATAGAGAGATGCTTGACAC+CGG 0.672311 2_3:+17440515 Msa0281840:CDS
GTTGCTAACAGTCCAACTGG+TGG 0.677526 2_3:+17438803 Msa0281840:CDS
TGAATGATGATTGGTAGACG+AGG 0.682281 2_3:-17441150 None:intergenic
AATGATCATGAAGGATGTGG+TGG 0.683968 2_3:+17439118 Msa0281840:CDS
TTGTCATCACCAGAAGATGG+AGG 0.693312 2_3:-17439097 None:intergenic
AATGTGCCAACGATTTACGG+TGG 0.717556 2_3:+17442277 Msa0281840:CDS
GGCTCAGCGTGATTACTGTG+AGG 0.718046 2_3:+17440253 Msa0281840:CDS
TCTGGTGCAAAATCTTTACG+AGG 0.719819 2_3:-17439160 None:intergenic
AGGATGTGGTGGTAGCAGTG+TGG 0.795037 2_3:+17439129 Msa0281840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTAGATTGAAAAT+TGG + chr2_3:17440607-17440626 Msa0281840:intron 10.0%
!! GTTATAAATAATTCAATATT+AGG - chr2_3:17442180-17442199 None:intergenic 10.0%
!!! TTTAATTTCTGACATATATA+TGG - chr2_3:17439744-17439763 None:intergenic 15.0%
!!! TCAAGTATATGATTTTTTTT+AGG + chr2_3:17442487-17442506 Msa0281840:three_prime_UTR 15.0%
!!! TTTTTTTGTTTGGTCTAAAT+TGG - chr2_3:17437676-17437695 None:intergenic 20.0%
!!! GTGTTTTTTCTTTTTTTGTT+TGG - chr2_3:17437686-17437705 None:intergenic 20.0%
!! CTAATTATAGACAAAGAAAA+CGG + chr2_3:17437791-17437810 Msa0281840:five_prime_UTR 20.0%
!! TAATTATAGACAAAGAAAAC+GGG + chr2_3:17437792-17437811 Msa0281840:five_prime_UTR 20.0%
!! TTTGAAGAAAAAACTGAAAA+TGG + chr2_3:17438103-17438122 Msa0281840:exon 20.0%
!! ATTCAGGTAAAAGAATAAAA+AGG + chr2_3:17439346-17439365 Msa0281840:intron 20.0%
!!! TTCAAATTTTAACGAGAAAA+AGG + chr2_3:17440307-17440326 Msa0281840:CDS 20.0%
!! ATGATGAAAATAATTATGAC+TGG + chr2_3:17440438-17440457 Msa0281840:CDS 20.0%
!!! ATCTTTTACCAAATACAAAA+TGG + chr2_3:17441232-17441251 Msa0281840:intron 20.0%
!!! TTAACACATTTAAAATCTGT+AGG - chr2_3:17441428-17441447 None:intergenic 20.0%
!!! ATATGTTTTAAAAATCGAGT+TGG + chr2_3:17441547-17441566 Msa0281840:intron 20.0%
!!! TTTTAAAGACTAAACTAAAC+GGG - chr2_3:17441707-17441726 None:intergenic 20.0%
!!! GTTTTAAAGACTAAACTAAA+CGG - chr2_3:17441708-17441727 None:intergenic 20.0%
!!! ATATTTGTGATTTTCCTTTT+GGG - chr2_3:17441867-17441886 None:intergenic 20.0%
!!! AATATTTGTGATTTTCCTTT+TGG - chr2_3:17441868-17441887 None:intergenic 20.0%
!! GTCATGAAATGTATTAAATA+TGG + chr2_3:17442023-17442042 Msa0281840:intron 20.0%
!!! GATTTTTTTTAGGAGAAATT+CGG + chr2_3:17442497-17442516 Msa0281840:three_prime_UTR 20.0%
! AGACACAATACACAAAAATA+AGG - chr2_3:17437742-17437761 None:intergenic 25.0%
! TAGTTATTACACGAAAAGAA+AGG - chr2_3:17437875-17437894 None:intergenic 25.0%
! AAAAGAAGAATGTGAAAAAG+AGG - chr2_3:17437941-17437960 None:intergenic 25.0%
!! TCATAGACATATTTTTCTCT+TGG - chr2_3:17437981-17438000 None:intergenic 25.0%
!!! ATGTCTATGATGATGAATTT+TGG + chr2_3:17437991-17438010 Msa0281840:intron 25.0%
!!! TGTCTATGATGATGAATTTT+GGG + chr2_3:17437992-17438011 Msa0281840:intron 25.0%
!! TTTTCTTCAAACTTTCAAGA+GGG - chr2_3:17438094-17438113 None:intergenic 25.0%
!! TTTTTCTTCAAACTTTCAAG+AGG - chr2_3:17438095-17438114 None:intergenic 25.0%
! ACAATAACAATGTTTCTTCT+TGG + chr2_3:17438348-17438367 Msa0281840:CDS 25.0%
! CAATAACAATGTTTCTTCTT+GGG + chr2_3:17438349-17438368 Msa0281840:CDS 25.0%
!!! TTTGTTGTTGAAGAAAAAAG+AGG + chr2_3:17438857-17438876 Msa0281840:CDS 25.0%
! GTAAAAGAATAAAAAGGAAG+TGG + chr2_3:17439352-17439371 Msa0281840:intron 25.0%
!!! CAAGCACTTACTTTTATAAA+TGG + chr2_3:17439862-17439881 Msa0281840:intron 25.0%
! AGAAACATTCATCACAATTA+AGG + chr2_3:17439942-17439961 Msa0281840:intron 25.0%
!! ATTTTTCCTGCATTACATAA+CGG - chr2_3:17439985-17440004 None:intergenic 25.0%
! TTCAAATGTTACCTTAAGAT+AGG + chr2_3:17441188-17441207 Msa0281840:intron 25.0%
! TACAAAAATCCAATAACCAA+AGG + chr2_3:17441379-17441398 Msa0281840:CDS 25.0%
! ACAAAAATCCAATAACCAAA+GGG + chr2_3:17441380-17441399 Msa0281840:CDS 25.0%
! AAAGTTGTCAATGAATCATT+AGG + chr2_3:17441465-17441484 Msa0281840:intron 25.0%
!!! GTTATCTATTGTCCTTTTTT+TGG + chr2_3:17441982-17442001 Msa0281840:intron 25.0%
TAAATTGGTGTGGCTAAAAA+AGG - chr2_3:17437661-17437680 None:intergenic 30.0%
ATTACACGAAAAGAAAGGAA+CGG - chr2_3:17437870-17437889 None:intergenic 30.0%
TTCATCCCTTTATCTGAAAA+GGG + chr2_3:17438037-17438056 Msa0281840:intron 30.0%
! AACAACCCTTTTCAGATAAA+GGG - chr2_3:17438045-17438064 None:intergenic 30.0%
! AAACAACCCTTTTCAGATAA+AGG - chr2_3:17438046-17438065 None:intergenic 30.0%
!!! AAAAGGGTTGTTTTGTTTTC+AGG + chr2_3:17438053-17438072 Msa0281840:intron 30.0%
TAGAGAAAGTAGCAAAGTTA+AGG + chr2_3:17438202-17438221 Msa0281840:CDS 30.0%
CAAAGTTCTTAATGTTCCTT+TGG - chr2_3:17438244-17438263 None:intergenic 30.0%
GAACATTAAGAACTTTGTCA+TGG + chr2_3:17438247-17438266 Msa0281840:CDS 30.0%
TTGAAGAGAAACAATCACAA+TGG + chr2_3:17438407-17438426 Msa0281840:CDS 30.0%
TGGTATCATCAACAACAATA+AGG + chr2_3:17438427-17438446 Msa0281840:CDS 30.0%
! ACAACATGTCTGAAATTGTA+AGG + chr2_3:17438600-17438619 Msa0281840:CDS 30.0%
! CTTTTCCCATAATTGAACAA+GGG - chr2_3:17438684-17438703 None:intergenic 30.0%
! TCTTTTCCCATAATTGAACA+AGG - chr2_3:17438685-17438704 None:intergenic 30.0%
TTGTTCAATTATGGGAAAAG+AGG + chr2_3:17438684-17438703 Msa0281840:CDS 30.0%
AAGAGGCTTAACAATTCAAA+TGG + chr2_3:17438701-17438720 Msa0281840:CDS 30.0%
TGTTGAAGAAAAAAGAGGTT+CGG + chr2_3:17438862-17438881 Msa0281840:CDS 30.0%
!! GTTTTCTTCATTCACTGATT+GGG + chr2_3:17438940-17438959 Msa0281840:CDS 30.0%
AACACTAACTCTATCACTTT+CGG - chr2_3:17439029-17439048 None:intergenic 30.0%
ACTTGTTCAAAACGAATTAG+AGG + chr2_3:17439214-17439233 Msa0281840:CDS 30.0%
TAGTACGACTTTAATAGTAG+TGG + chr2_3:17439487-17439506 Msa0281840:intron 30.0%
TTCAAACCTTAGTTGCATAA+TGG - chr2_3:17439691-17439710 None:intergenic 30.0%
CTAAATTTCACTCTATGGAA+TGG - chr2_3:17439782-17439801 None:intergenic 30.0%
CTAGTCTAAATTTCACTCTA+TGG - chr2_3:17439787-17439806 None:intergenic 30.0%
TTTCTATGTATTGCGTATCT+TGG - chr2_3:17439927-17439946 None:intergenic 30.0%
!! CAGGAAAAATTTTAGCATCA+GGG + chr2_3:17439995-17440014 Msa0281840:intron 30.0%
CTGTACTGTATTTCTTTCTT+TGG - chr2_3:17440021-17440040 None:intergenic 30.0%
CAAAGAAAGAAATACAGTAC+AGG + chr2_3:17440019-17440038 Msa0281840:CDS 30.0%
TGTGTGTTTACTATCTCTTT+GGG - chr2_3:17440071-17440090 None:intergenic 30.0%
TTGTGTGTTTACTATCTCTT+TGG - chr2_3:17440072-17440091 None:intergenic 30.0%
! AACTGTTTTCATCATTTTGC+TGG - chr2_3:17440340-17440359 None:intergenic 30.0%
TATATCTTCATTTGGAGAAC+CGG - chr2_3:17440537-17440556 None:intergenic 30.0%
TTCTCCAAATGAAGATATAC+AGG + chr2_3:17440538-17440557 Msa0281840:CDS 30.0%
ATGATGAGATAGACAATGAA+GGG + chr2_3:17440796-17440815 Msa0281840:CDS 30.0%
AGAAAATGGAACAGATAGAA+CGG + chr2_3:17440866-17440885 Msa0281840:CDS 30.0%
! AGTAGTTTGTGTCATGAAAT+CGG + chr2_3:17440996-17441015 Msa0281840:CDS 30.0%
ATTCTAATCAATCCTCATCA+TGG + chr2_3:17441024-17441043 Msa0281840:CDS 30.0%
AGTTATAGAGACAATGAAGT+TGG + chr2_3:17441047-17441066 Msa0281840:CDS 30.0%
AGTCTTCCTATCATGATAAT+CGG + chr2_3:17441120-17441139 Msa0281840:CDS 30.0%
ACTCACAATTGAATGATGAT+TGG - chr2_3:17441162-17441181 None:intergenic 30.0%
AATGCACTAAACCTATCTTA+AGG - chr2_3:17441202-17441221 None:intergenic 30.0%
! AAGCACATCCATTTTGTATT+TGG - chr2_3:17441243-17441262 None:intergenic 30.0%
GATCTCATATATGATATGAG+AGG + chr2_3:17441273-17441292 Msa0281840:CDS 30.0%
GAAATCAATAAAGAGTTGCA+TGG + chr2_3:17441335-17441354 Msa0281840:CDS 30.0%
CTTAAGAATTTCCCAAACAA+AGG + chr2_3:17441509-17441528 Msa0281840:intron 30.0%
ATGCTAATATAACCTAACTG+TGG + chr2_3:17441646-17441665 Msa0281840:intron 30.0%
TCATGACTAAAGATATTCAG+AGG - chr2_3:17442010-17442029 None:intergenic 30.0%
!!! TTCCATCAACTTCTTTTTTC+AGG + chr2_3:17442229-17442248 Msa0281840:intron 30.0%
! ACATATTGGACATTTTCCAT+TGG - chr2_3:17442304-17442323 None:intergenic 30.0%
!! GAAAGAGTATCTTACTTTAG+AGG + chr2_3:17442381-17442400 Msa0281840:three_prime_UTR 30.0%
AAGTTTCATGACTAAGGATT+TGG - chr2_3:17442408-17442427 None:intergenic 30.0%
TTCACTAAGTTTCATGACTA+AGG - chr2_3:17442414-17442433 None:intergenic 30.0%
! CTTGAAAAGTATACGTGAAA+AGG - chr2_3:17442472-17442491 None:intergenic 30.0%
CTAAAAAAGGAACAAGCGTT+TGG - chr2_3:17437648-17437667 None:intergenic 35.0%
TTGTTTGGTCTAAATTGGTG+TGG - chr2_3:17437671-17437690 None:intergenic 35.0%
AAAAGAGGAGGAAAAGATGA+AGG - chr2_3:17437926-17437945 None:intergenic 35.0%
AGAAGAATGTGAAAAAGAGG+AGG - chr2_3:17437938-17437957 None:intergenic 35.0%
!! CTATGATGATGAATTTTGGG+AGG + chr2_3:17437995-17438014 Msa0281840:intron 35.0%
CTTCATCCCTTTATCTGAAA+AGG + chr2_3:17438036-17438055 Msa0281840:intron 35.0%
TTCAAACTTTCAAGAGGGTT+TGG - chr2_3:17438089-17438108 None:intergenic 35.0%
AAACTGAAAATGGCTTCTTC+TGG + chr2_3:17438113-17438132 Msa0281840:exon 35.0%
TACATCCATCACGATGATTA+CGG - chr2_3:17438184-17438203 None:intergenic 35.0%
ACATTGTAATGCACGTGTTA+AGG - chr2_3:17438277-17438296 None:intergenic 35.0%
GTCTTCCCTTGTTCAATTAT+GGG + chr2_3:17438676-17438695 Msa0281840:CDS 35.0%
AATGGAGAAAACAAGTCCAA+CGG + chr2_3:17438742-17438761 Msa0281840:CDS 35.0%
TCTTCATTCCCTGATGATAA+CGG - chr2_3:17438911-17438930 None:intergenic 35.0%
! CGTTTTCTTCATTCACTGAT+TGG + chr2_3:17438939-17438958 Msa0281840:CDS 35.0%
TGTGTTCAGTTGATCAAAGT+AGG + chr2_3:17438993-17439012 Msa0281840:CDS 35.0%
!! CAATGATTTGCTTATGCAGT+TGG + chr2_3:17439249-17439268 Msa0281840:CDS 35.0%
! GGATCACATGTTTAAAACCT+TGG - chr2_3:17439423-17439442 None:intergenic 35.0%
GCAATATCAAAGACAACAAC+AGG - chr2_3:17439444-17439463 None:intergenic 35.0%
CATGAAATCGAGCAATAGAA+AGG - chr2_3:17439525-17439544 None:intergenic 35.0%
AATTCGTACACATCATGACA+CGG - chr2_3:17439559-17439578 None:intergenic 35.0%
CTTCGACTTAAATTGTTACG+TGG + chr2_3:17439588-17439607 Msa0281840:CDS 35.0%
!! CTTCAGATGATGTTGATTTC+TGG - chr2_3:17439638-17439657 None:intergenic 35.0%
AACAGACAAGTACAACCATA+CGG + chr2_3:17439660-17439679 Msa0281840:CDS 35.0%
TCTGACATATATATGGTCCA+TGG - chr2_3:17439737-17439756 None:intergenic 35.0%
AGATGAGAAATTGAGCATGA+AGG + chr2_3:17439829-17439848 Msa0281840:intron 35.0%
!! GCAGGAAAAATTTTAGCATC+AGG + chr2_3:17439994-17440013 Msa0281840:intron 35.0%
! GTCTCAAGAAACATGTTTTG+AGG + chr2_3:17440232-17440251 Msa0281840:CDS 35.0%
TTATGATTGTGCAGTAGAAG+AGG + chr2_3:17440358-17440377 Msa0281840:CDS 35.0%
! AACTGCTTTCAGCATAGTTT+TGG - chr2_3:17440394-17440413 None:intergenic 35.0%
TGAAAGCAGTTATGAAGAGA+TGG + chr2_3:17440403-17440422 Msa0281840:CDS 35.0%
AGCACCTGTATATCTTCATT+TGG - chr2_3:17440545-17440564 None:intergenic 35.0%
ATATACAGGTGCTTCTTCAA+AGG + chr2_3:17440552-17440571 Msa0281840:CDS 35.0%
GATGATGAGATAGACAATGA+AGG + chr2_3:17440795-17440814 Msa0281840:CDS 35.0%
! CTATCTGTTCCATTTTCTTG+AGG - chr2_3:17440864-17440883 None:intergenic 35.0%
TAGGAAGACTGAGATTGATA+AGG - chr2_3:17441110-17441129 None:intergenic 35.0%
TACAAAATGGATGTGCTTAC+AGG + chr2_3:17441245-17441264 Msa0281840:intron 35.0%
ATATGATATGAGAGGCCATA+TGG + chr2_3:17441281-17441300 Msa0281840:CDS 35.0%
CTTGATAAAGTTGCTCCATA+TGG - chr2_3:17441299-17441318 None:intergenic 35.0%
ATCAAGAGATGAGTGAACTA+AGG + chr2_3:17441313-17441332 Msa0281840:CDS 35.0%
TTCCCAAACAAAGGAAAAAG+AGG + chr2_3:17441518-17441537 Msa0281840:intron 35.0%
!! CACCTCTTTTTCCTTTGTTT+GGG - chr2_3:17441523-17441542 None:intergenic 35.0%
! ACACCTCTTTTTCCTTTGTT+TGG - chr2_3:17441524-17441543 None:intergenic 35.0%
! GGTTTAAAACAGTTGAACCA+TGG - chr2_3:17441598-17441617 None:intergenic 35.0%
ATTCAGTCGCAATATTCTCT+CGG - chr2_3:17441628-17441647 None:intergenic 35.0%
! AGAATTTTGCTTCACCCAAA+AGG + chr2_3:17441850-17441869 Msa0281840:intron 35.0%
!!! CTTGAGTTTTAAGCGATCTA+AGG - chr2_3:17441908-17441927 None:intergenic 35.0%
!! TATTCAGAGGCACCAAAAAA+AGG - chr2_3:17441997-17442016 None:intergenic 35.0%
! CTTCCTTTTCAGCTGTAAAA+GGG - chr2_3:17442051-17442070 None:intergenic 35.0%
! TCTTCCTTTTCAGCTGTAAA+AGG - chr2_3:17442052-17442071 None:intergenic 35.0%
AAGAAGTCACATAACAAGAC+TGG + chr2_3:17442073-17442092 Msa0281840:CDS 35.0%
CATAACAAGACTGGTAAGAA+AGG + chr2_3:17442082-17442101 Msa0281840:CDS 35.0%
! AAGTTGACTCAGTTCTATAC+AGG + chr2_3:17442131-17442150 Msa0281840:CDS 35.0%
!! TGCTACTTTGTTCTGAAGAT+TGG - chr2_3:17442202-17442221 None:intergenic 35.0%
CACCTGAAAAAAGAAGTTGA+TGG - chr2_3:17442234-17442253 None:intergenic 35.0%
!!! TCAACTTCTTTTTTCAGGTG+TGG + chr2_3:17442234-17442253 Msa0281840:intron 35.0%
TGAAATGTGCCAACGATTTA+CGG + chr2_3:17442274-17442293 Msa0281840:CDS 35.0%
!!! TCTATTTTAGCGCGACATAT+TGG - chr2_3:17442318-17442337 None:intergenic 35.0%
GATACTCTTTCAACTGAGAT+AGG - chr2_3:17442372-17442391 None:intergenic 35.0%
AGACAAAGAAAACGGGAATG+AGG + chr2_3:17437799-17437818 Msa0281840:five_prime_UTR 40.0%
!! GCCTTTTGGTTGTGTTCTAA+GGG + chr2_3:17438157-17438176 Msa0281840:CDS 40.0%
TCCCTTAGAACACAACCAAA+AGG - chr2_3:17438161-17438180 None:intergenic 40.0%
!!! CTACACATGCTGTTTTCCAA+AGG + chr2_3:17438225-17438244 Msa0281840:CDS 40.0%
TTGTAATGCACGTGTTAAGG+TGG - chr2_3:17438274-17438293 None:intergenic 40.0%
GTTTCTTCTTGGGCTTCAAA+AGG + chr2_3:17438359-17438378 Msa0281840:CDS 40.0%
AAGGTAGCAACAATCTTGCA+AGG + chr2_3:17438378-17438397 Msa0281840:CDS 40.0%
TAACGAAAATGAGCCATCCT+TGG + chr2_3:17438451-17438470 Msa0281840:CDS 40.0%
!! AAGGACATCTAGTTCTACCT+CGG + chr2_3:17438619-17438638 Msa0281840:CDS 40.0%
TACCTCGGATGAATGTTCTT+CGG + chr2_3:17438634-17438653 Msa0281840:CDS 40.0%
TCTTCGGAGAAATTGAACCT+TGG + chr2_3:17438650-17438669 Msa0281840:CDS 40.0%
CGTCTTCCCTTGTTCAATTA+TGG + chr2_3:17438675-17438694 Msa0281840:CDS 40.0%
ATCCAAACCAAACACTCCAA+TGG + chr2_3:17438724-17438743 Msa0281840:CDS 40.0%
!! GTTTTCTCCATTGGAGTGTT+TGG - chr2_3:17438734-17438753 None:intergenic 40.0%
!! GTTGGACTTGTTTTCTCCAT+TGG - chr2_3:17438743-17438762 None:intergenic 40.0%
ATGGAGAAAACAAGTCCAAC+GGG + chr2_3:17438743-17438762 Msa0281840:CDS 40.0%
TTTGTTGCTAACAGTCCAAC+TGG + chr2_3:17438800-17438819 Msa0281840:CDS 40.0%
GAAAAAAGAGGTTCGGAACT+AGG + chr2_3:17438869-17438888 Msa0281840:CDS 40.0%
TTTGAAGGACCGTTATCATC+AGG + chr2_3:17438899-17438918 Msa0281840:CDS 40.0%
TTGAAGGACCGTTATCATCA+GGG + chr2_3:17438900-17438919 Msa0281840:CDS 40.0%
GATTGGGAATCTGATAAGAC+AGG + chr2_3:17438956-17438975 Msa0281840:CDS 40.0%
ATAAGACAGGTGATCAGAGT+AGG + chr2_3:17438969-17438988 Msa0281840:CDS 40.0%
TCATTGTCATCACCAGAAGA+TGG - chr2_3:17439103-17439122 None:intergenic 40.0%
GGTGATGACAATGATCATGA+AGG + chr2_3:17439109-17439128 Msa0281840:CDS 40.0%
GACAATGATCATGAAGGATG+TGG + chr2_3:17439115-17439134 Msa0281840:CDS 40.0%
AATGATCATGAAGGATGTGG+TGG + chr2_3:17439118-17439137 Msa0281840:CDS 40.0%
TCTGGTGCAAAATCTTTACG+AGG - chr2_3:17439163-17439182 None:intergenic 40.0%
TGAACAAGTAACCTGAGGAA+AGG - chr2_3:17439203-17439222 None:intergenic 40.0%
!! CGTTTTGAACAAGTAACCTG+AGG - chr2_3:17439208-17439227 None:intergenic 40.0%
GTCATGATGTGTACGAATTC+AGG + chr2_3:17439560-17439579 Msa0281840:intron 40.0%
ACTTAAATTGTTACGTGGCG+CGG + chr2_3:17439593-17439612 Msa0281840:CDS 40.0%
!! GATGTTGATTTCTGGTGTGA+TGG - chr2_3:17439630-17439649 None:intergenic 40.0%
GATCTGCCATTATGCAACTA+AGG + chr2_3:17439682-17439701 Msa0281840:CDS 40.0%
CATGGAAGTTGACATCTGTA+TGG - chr2_3:17439719-17439738 None:intergenic 40.0%
CATACAGATGTCAACTTCCA+TGG + chr2_3:17439717-17439736 Msa0281840:intron 40.0%
GTGTTTACTATCTCTTTGGG+AGG - chr2_3:17440068-17440087 None:intergenic 40.0%
!! TTTGCTGATTTGATCAGCAG+TGG - chr2_3:17440108-17440127 None:intergenic 40.0%
CAAATCAGCAAAGACACAAG+TGG + chr2_3:17440116-17440135 Msa0281840:CDS 40.0%
CGCCATAGAATTGACAAAGT+CGG + chr2_3:17440166-17440185 Msa0281840:CDS 40.0%
CTCCGACTTTGTCAATTCTA+TGG - chr2_3:17440171-17440190 None:intergenic 40.0%
TTACTGTGAGGAAACTTCTG+AGG + chr2_3:17440265-17440284 Msa0281840:CDS 40.0%
ATTGTGCAGTAGAAGAGGAA+GGG + chr2_3:17440363-17440382 Msa0281840:CDS 40.0%
AAGCAGTTATGAAGAGATGG+TGG + chr2_3:17440406-17440425 Msa0281840:CDS 40.0%
TATAGAGAGATGCTTGACAC+CGG + chr2_3:17440515-17440534 Msa0281840:CDS 40.0%
GTTTCAACCTTCCTTTCTAG+TGG + chr2_3:17440702-17440721 Msa0281840:CDS 40.0%
TCAACCTATCCATTGTTTCG+CGG - chr2_3:17440731-17440750 None:intergenic 40.0%
!! AGGTTGATGCAGTCTCATAA+AGG + chr2_3:17440744-17440763 Msa0281840:CDS 40.0%
GATAGACAATGAAGGGTTGA+TGG + chr2_3:17440803-17440822 Msa0281840:CDS 40.0%
TTCCAAGAACACTTGTATCC+TGG + chr2_3:17440831-17440850 Msa0281840:CDS 40.0%
TTCCAGGATACAAGTGTTCT+TGG - chr2_3:17440836-17440855 None:intergenic 40.0%
! TTTTCTTGAGGAGATCTTCC+AGG - chr2_3:17440852-17440871 None:intergenic 40.0%
GGAAGATCTCCTCAAGAAAA+TGG + chr2_3:17440852-17440871 Msa0281840:CDS 40.0%
TAGAACGGTAGATGAAGAAG+AGG + chr2_3:17440881-17440900 Msa0281840:CDS 40.0%
GGTAGATGAAGAAGAGGAAA+GGG + chr2_3:17440887-17440906 Msa0281840:CDS 40.0%
AGAAGAGGAAAGGGTAAATG+AGG + chr2_3:17440896-17440915 Msa0281840:CDS 40.0%
AGATGAGAAAGATCGTGAAG+AGG + chr2_3:17440935-17440954 Msa0281840:CDS 40.0%
GTCTCTATAACTCCATGATG+AGG - chr2_3:17441039-17441058 None:intergenic 40.0%
GTTTGGCCGATTATCATGAT+AGG - chr2_3:17441129-17441148 None:intergenic 40.0%
TGAATGATGATTGGTAGACG+AGG - chr2_3:17441153-17441172 None:intergenic 40.0%
ATGGATGTGCTTACAGGAAA+TGG + chr2_3:17441251-17441270 Msa0281840:intron 40.0%
TGTTTGCACCCTTTGGTTAT+TGG - chr2_3:17441391-17441410 None:intergenic 40.0%
! AATAACCAAAGGGTGCAAAC+AGG + chr2_3:17441390-17441409 Msa0281840:CDS 40.0%
AATCGACATTGTCCACAGTT+AGG - chr2_3:17441661-17441680 None:intergenic 40.0%
! TCTTTTCTGAACTTGCAGAC+TGG - chr2_3:17441830-17441849 None:intergenic 40.0%
!!! GAGTTTTAAGCGATCTAAGG+AGG - chr2_3:17441905-17441924 None:intergenic 40.0%
! GAACCCTTTTACAGCTGAAA+AGG + chr2_3:17442045-17442064 Msa0281840:intron 40.0%
CTGAGTCAACTTTCATCTCA+TGG - chr2_3:17442123-17442142 None:intergenic 40.0%
! ATTGCGACTTCTTCGCCTTT+TGG + chr2_3:17438143-17438162 Msa0281840:CDS 45.0%
!! CGCCTTTTGGTTGTGTTCTA+AGG + chr2_3:17438156-17438175 Msa0281840:CDS 45.0%
CTAATCAACGAAGCCAAGGA+TGG - chr2_3:17438467-17438486 None:intergenic 45.0%
ATTCGCGCCTTCTTGATAGA+TGG + chr2_3:17438495-17438514 Msa0281840:CDS 45.0%
TTCGCGCCTTCTTGATAGAT+GGG + chr2_3:17438496-17438515 Msa0281840:CDS 45.0%
! TCGTGAGATGGTGTCGAATT+TGG + chr2_3:17438532-17438551 Msa0281840:CDS 45.0%
! CTCCATTGGAGTGTTTGGTT+TGG - chr2_3:17438729-17438748 None:intergenic 45.0%
!! GAACTAGGAGAGGGTTTTGA+AGG + chr2_3:17438884-17438903 Msa0281840:CDS 45.0%
TTGTCATCACCAGAAGATGG+AGG - chr2_3:17439100-17439119 None:intergenic 45.0%
!! GCTCTTTGCTCTGAAAGTTC+TGG - chr2_3:17439181-17439200 None:intergenic 45.0%
TTATGCAGTTGGAGCGTGAT+AGG + chr2_3:17439260-17439279 Msa0281840:CDS 45.0%
GTCTCCAAGTTCGCACAAAA+AGG + chr2_3:17439319-17439338 Msa0281840:CDS 45.0%
TATGTTAGTGCTCGTGTCCA+AGG + chr2_3:17439403-17439422 Msa0281840:intron 45.0%
TGCATAATGGCAGATCCGTA+TGG - chr2_3:17439678-17439697 None:intergenic 45.0%
CTTGCACCGTTATGTAATGC+AGG + chr2_3:17439976-17439995 Msa0281840:intron 45.0%
TGACAGTTCCATGCACAATC+TGG - chr2_3:17440142-17440161 None:intergenic 45.0%
TGAGACATGACAGTTGAGCT+TGG - chr2_3:17440218-17440237 None:intergenic 45.0%
GATTGTGCAGTAGAAGAGGA+AGG + chr2_3:17440362-17440381 Msa0281840:CDS 45.0%
TTTCTCGACCGAGAAGCTAT+TGG + chr2_3:17440471-17440490 Msa0281840:CDS 45.0%
TTCTCGACCGAGAAGCTATT+GGG + chr2_3:17440472-17440491 Msa0281840:CDS 45.0%
CGGTAGATGAAGAAGAGGAA+AGG + chr2_3:17440886-17440905 Msa0281840:CDS 45.0%
AGAGGAAAGGGTAAATGAGG+AGG + chr2_3:17440899-17440918 Msa0281840:CDS 45.0%
AAAGATCGTGAAGAGGAGCA+AGG + chr2_3:17440942-17440961 Msa0281840:CDS 45.0%
GAGCTTGGTTAGTAGTAGCT+TGG + chr2_3:17440971-17440990 Msa0281840:CDS 45.0%
TGATTGGTAGACGAGGAGTT+TGG - chr2_3:17441146-17441165 None:intergenic 45.0%
ACAAACCTGTTTGCACCCTT+TGG - chr2_3:17441398-17441417 None:intergenic 45.0%
CTGTCAAAACCACTACACCA+TGG + chr2_3:17441578-17441597 Msa0281840:intron 45.0%
ACAGTTGAACCATGGTGTAG+TGG - chr2_3:17441590-17441609 None:intergenic 45.0%
! CAATATTCTCTCGGTTCGAG+TGG - chr2_3:17441619-17441638 None:intergenic 45.0%
AATGTGCCAACGATTTACGG+TGG + chr2_3:17442277-17442296 Msa0281840:CDS 45.0%
ATTGGTCCACCGTAAATCGT+TGG - chr2_3:17442286-17442305 None:intergenic 45.0%
AACGATTTACGGTGGACCAA+TGG + chr2_3:17442285-17442304 Msa0281840:CDS 45.0%
AGGGACCGTAATCATCGTGA+TGG + chr2_3:17438176-17438195 Msa0281840:CDS 50.0%
CGGACTAATCAACGAAGCCA+AGG - chr2_3:17438471-17438490 None:intergenic 50.0%
! TCAAGAAGGCGCGAATGTCT+CGG - chr2_3:17438491-17438510 None:intergenic 50.0%
TCGCAGCCCATCTATCAAGA+AGG - chr2_3:17438505-17438524 None:intergenic 50.0%
CTCCGAAGAACATTCATCCG+AGG - chr2_3:17438639-17438658 None:intergenic 50.0%
GTTGCTAACAGTCCAACTGG+TGG + chr2_3:17438803-17438822 Msa0281840:CDS 50.0%
GTTGCAGTTGTACCACCAGT+TGG - chr2_3:17438818-17438837 None:intergenic 50.0%
AAGAGGTTCGGAACTAGGAG+AGG + chr2_3:17438874-17438893 Msa0281840:CDS 50.0%
AGAGGTTCGGAACTAGGAGA+GGG + chr2_3:17438875-17438894 Msa0281840:CDS 50.0%
CAGAGTTCACCTCCATCTTC+TGG + chr2_3:17439088-17439107 Msa0281840:CDS 50.0%
AGAGCAAAGAGCCTTTCCTC+AGG + chr2_3:17439189-17439208 Msa0281840:CDS 50.0%
AGTTGGAGCGTGATAGGCAT+GGG + chr2_3:17439266-17439285 Msa0281840:CDS 50.0%
GCATGGGGAGCTAAAGAACT+TGG + chr2_3:17439282-17439301 Msa0281840:CDS 50.0%
CTAAAGAACTTGGCCGAACG+TGG + chr2_3:17439292-17439311 Msa0281840:CDS 50.0%
CTTGGAGACAGTTCCACGTT+CGG - chr2_3:17439308-17439327 None:intergenic 50.0%
! GCGACCTTTTTGTGCGAACT+TGG - chr2_3:17439326-17439345 None:intergenic 50.0%
CGCACAAAAAGGTCGCATTC+AGG + chr2_3:17439330-17439349 Msa0281840:CDS 50.0%
ACAAGTGGCCAGATTGTGCA+TGG + chr2_3:17440131-17440150 Msa0281840:CDS 50.0%
CGCTCTTCCCAATAGCTTCT+CGG - chr2_3:17440482-17440501 None:intergenic 50.0%
CGAGAAGCTATTGGGAAGAG+CGG + chr2_3:17440480-17440499 Msa0281840:CDS 50.0%
TTTCGCGGAAGCCACTAGAA+AGG - chr2_3:17440716-17440735 None:intergenic 50.0%
TAGTGGCTTCCGCGAAACAA+TGG + chr2_3:17440719-17440738 Msa0281840:CDS 50.0%
GCTTCCGCGAAACAATGGAT+AGG + chr2_3:17440724-17440743 Msa0281840:CDS 50.0%
GGAAAGGGTAAATGAGGAGG+AGG + chr2_3:17440902-17440921 Msa0281840:CDS 50.0%
AAGGGTAAATGAGGAGGAGG+AGG + chr2_3:17440905-17440924 Msa0281840:CDS 50.0%
ATCGTGAAGAGGAGCAAGGA+GGG + chr2_3:17440946-17440965 Msa0281840:CDS 50.0%
TGCGAGACAAGCTCGTGAGA+TGG + chr2_3:17438520-17438539 Msa0281840:CDS 55.0%
GAACAAGGGAAGACGCACCA+AGG - chr2_3:17438670-17438689 None:intergenic 55.0%
GTTGCACTTGTCACACCCGT+TGG - chr2_3:17438761-17438780 None:intergenic 55.0%
AGGATGTGGTGGTAGCAGTG+TGG + chr2_3:17439129-17439148 Msa0281840:CDS 55.0%
CAGTTGGAGCGTGATAGGCA+TGG + chr2_3:17439265-17439284 Msa0281840:CDS 55.0%
GTTGGAGCGTGATAGGCATG+GGG + chr2_3:17439267-17439286 Msa0281840:CDS 55.0%
GGCTCAGCGTGATTACTGTG+AGG + chr2_3:17440253-17440272 Msa0281840:CDS 55.0%
GAAGCTATTGGGAAGAGCGG+AGG + chr2_3:17440483-17440502 Msa0281840:CDS 55.0%
GCGGAAGCCACTAGAAAGGA+AGG - chr2_3:17440712-17440731 None:intergenic 55.0%
GATCGTGAAGAGGAGCAAGG+AGG + chr2_3:17440945-17440964 Msa0281840:CDS 55.0%
TCGTGAAGAGGAGCAAGGAG+GGG + chr2_3:17440947-17440966 Msa0281840:CDS 55.0%
GGGAAGAGCGGAGGCAAGCA+TGG + chr2_3:17440492-17440511 Msa0281840:CDS 65.0%
GGAGCAAGGAGGGGAGAGCT+TGG + chr2_3:17440956-17440975 Msa0281840:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 17437641 17442564 17437641 ID=Msa0281840;Name=Msa0281840
chr2_3 mRNA 17437641 17442564 17437641 ID=Msa0281840-mRNA-1;Parent=Msa0281840;Name=Msa0281840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=227|1|1|1|0.85|0.75|8|196|921
chr2_3 exon 17437641 17437820 17437641 ID=Msa0281840-mRNA-1:exon:7175;Parent=Msa0281840-mRNA-1
chr2_3 exon 17438075 17439351 17438075 ID=Msa0281840-mRNA-1:exon:7176;Parent=Msa0281840-mRNA-1
chr2_3 exon 17439582 17439703 17439582 ID=Msa0281840-mRNA-1:exon:7177;Parent=Msa0281840-mRNA-1
chr2_3 exon 17439998 17440573 17439998 ID=Msa0281840-mRNA-1:exon:7178;Parent=Msa0281840-mRNA-1
chr2_3 exon 17440695 17441175 17440695 ID=Msa0281840-mRNA-1:exon:7179;Parent=Msa0281840-mRNA-1
chr2_3 exon 17441267 17441411 17441267 ID=Msa0281840-mRNA-1:exon:7180;Parent=Msa0281840-mRNA-1
chr2_3 exon 17442059 17442152 17442059 ID=Msa0281840-mRNA-1:exon:7181;Parent=Msa0281840-mRNA-1
chr2_3 exon 17442251 17442564 17442251 ID=Msa0281840-mRNA-1:exon:7182;Parent=Msa0281840-mRNA-1
chr2_3 five_prime_UTR 17437641 17437820 17437641 ID=Msa0281840-mRNA-1:five_prime_utr;Parent=Msa0281840-mRNA-1
chr2_3 five_prime_UTR 17438075 17438121 17438075 ID=Msa0281840-mRNA-1:five_prime_utr;Parent=Msa0281840-mRNA-1
chr2_3 CDS 17438122 17439351 17438122 ID=Msa0281840-mRNA-1:cds;Parent=Msa0281840-mRNA-1
chr2_3 CDS 17439582 17439703 17439582 ID=Msa0281840-mRNA-1:cds;Parent=Msa0281840-mRNA-1
chr2_3 CDS 17439998 17440573 17439998 ID=Msa0281840-mRNA-1:cds;Parent=Msa0281840-mRNA-1
chr2_3 CDS 17440695 17441175 17440695 ID=Msa0281840-mRNA-1:cds;Parent=Msa0281840-mRNA-1
chr2_3 CDS 17441267 17441411 17441267 ID=Msa0281840-mRNA-1:cds;Parent=Msa0281840-mRNA-1
chr2_3 CDS 17442059 17442152 17442059 ID=Msa0281840-mRNA-1:cds;Parent=Msa0281840-mRNA-1
chr2_3 CDS 17442251 17442368 17442251 ID=Msa0281840-mRNA-1:cds;Parent=Msa0281840-mRNA-1
chr2_3 three_prime_UTR 17442369 17442564 17442369 ID=Msa0281840-mRNA-1:three_prime_utr;Parent=Msa0281840-mRNA-1
Gene Sequence

>Msa0281840

ATGGCTTCTTCTGGTGTTGAAATTGCGACTTCTTCGCCTTTTGGTTGTGTTCTAAGGGACCGTAATCATCGTGATGGATGTAGAGAAAGTAGCAAAGTTAAGGCTACACATGCTGTTTTCCAAAGGAACATTAAGAACTTTGTCATGGACCACCTTAACACGTGCATTACAATGTCTTCTGATTCTGCAACAAACGAAAACAACGAGAGTCAAATGAAGAACAACAACAATAACAATGTTTCTTCTTGGGCTTCAAAAGGTAGCAACAATCTTGCAAGGCTTCGTTTGAAGAGAAACAATCACAATGGTATCATCAACAACAATAAGGATAACGAAAATGAGCCATCCTTGGCTTCGTTGATTAGTCCGAGACATTCGCGCCTTCTTGATAGATGGGCTGCGAGACAAGCTCGTGAGATGGTGTCGAATTTGGAGAATGAAACTGAATTGTTGTCGATTGACAACACGAACAATGACAACAACATGTCTGAAATTGTAAGGACATCTAGTTCTACCTCGGATGAATGTTCTTCGGAGAAATTGAACCTTGGTGCGTCTTCCCTTGTTCAATTATGGGAAAAGAGGCTTAACAATTCAAATGGATCCAAACCAAACACTCCAATGGAGAAAACAAGTCCAACGGGTGTGACAAGTGCAACTTGCAACAATGAGAATGTGTTTGTTGCTAACAGTCCAACTGGTGGTACAACTGCAACTTGCAACAATGAGAATGCGTTTGTTGTTGAAGAAAAAAGAGGTTCGGAACTAGGAGAGGGTTTTGAAGGACCGTTATCATCAGGGAATGAAGAATCGTTTTCGTTTTCTTCATTCACTGATTGGGAATCTGATAAGACAGGTGATCAGAGTAGGTTGTGTTCAGTTGATCAAAGTAGGAAGAATTCGTCCGAAAGTGATAGAGTTAGTGTTGCTGATATCATAAAGAAACTCACTGCTACAAGTCAAACTCAGAGTTCACCTCCATCTTCTGGTGATGACAATGATCATGAAGGATGTGGTGGTAGCAGTGTGGCAAGTTCTCCTCGTAAAGATTTTGCACCAGAACTTTCAGAGCAAAGAGCCTTTCCTCAGGTTACTTGTTCAAAACGAATTAGAGGACGTCGAGCTTTCAATGATTTGCTTATGCAGTTGGAGCGTGATAGGCATGGGGAGCTAAAGAACTTGGCCGAACGTGGAACTGTCTCCAAGTTCGCACAAAAAGGTCGCATTCAGGCATTACTTCGACTTAAATTGTTACGTGGCGCGGCAGCTAATGTTCCATCACACCAGAAATCAACATCATCTGAAGTAAACAGACAAGTACAACCATACGGATCTGCCATTATGCAACTAAGGAAAAATTTTAGCATCAGGGCCAAAGAAAGAAATACAGTACAGGCAGAAGTAGTGAACACACGAAGTCCTCCCAAAGAGATAGTAAACACACAATTACAAAACTCTACCACTGCTGATCAAATCAGCAAAGACACAAGTGGCCAGATTGTGCATGGAACTGTCAGTCACGCCATAGAATTGACAAAGTCGGAGACTCAGACTAGAGAAGAAGATCATCCAAGCTCAACTGTCATGTCTCAAGAAACATGTTTTGAGGCTCAGCGTGATTACTGTGAGGAAACTTCTGAGGAAACTGCATCAATAACAGATTCAAATTTTAACGAGAAAAAGGAAATTAACCAGCAAAATGATGAAAACAGTTATGATTGTGCAGTAGAAGAGGAAGGGAGTAACCAAAACTATGCTGAAAGCAGTTATGAAGAGATGGTGGAAGAGAATTATGATGAAAATAATTATGACTGGATCAGTGAAATTTCTCGACCGAGAAGCTATTGGGAAGAGCGGAGGCAAGCATGGTATAGAGAGATGCTTGACACCGGTTCTCCAAATGAAGATATACAGGTGCTTCTTCAAAGAAGAACAGTTTCAACCTTCCTTTCTAGTGGCTTCCGCGAAACAATGGATAGGTTGATGCAGTCTCATAAAGGAACACAAACACATCTAGTTAGCAGTCAAGATGATGAGATAGACAATGAAGGGTTGATGGCGTTTTTCCAAGAACACTTGTATCCTGGAAGATCTCCTCAAGAAAATGGAACAGATAGAACGGTAGATGAAGAAGAGGAAAGGGTAAATGAGGAGGAGGAGGAGAAGCAAGATGAGAAAGATCGTGAAGAGGAGCAAGGAGGGGAGAGCTTGGTTAGTAGTAGCTTGGTTAGTAGTTTGTGTCATGAAATCGGAGACTATTCTAATCAATCCTCATCATGGAGTTATAGAGACAATGAAGTTGGTGATGATTTTGATAGAGTAGCTTCTACATCTTCACAACCTTATCAATCTCAGTCTTCCTATCATGATAATCGGCCAAACTCCTCGTCTACCAATCATCATTCAATTGAAATGGATCTCATATATGATATGAGAGGCCATATGGAGCAACTTTATCAAGAGATGAGTGAACTAAGGAAATCAATAAAGAGTTGCATGGATATGCAGATGCAGATGCAGTTACAAAAATCCAATAACCAAAGGGTGCAAACAGCTGAAAAGGAAGAAAAGAAGTCACATAACAAGACTGGTAAGAAAGGAAACTGCTGCATTTGCCATGAGATGAAAGTTGACTCAGTTCTATACAGGTGTGGACACATGTGTGCATGTCTGAAATGTGCCAACGATTTACGGTGGACCAATGGAAAATGTCCAATATGTCGCGCTAAAATAGACGATGTTGTTCGAGTTTATCTTGAAGTATAG

Protein sequence

>Msa0281840

MASSGVEIATSSPFGCVLRDRNHRDGCRESSKVKATHAVFQRNIKNFVMDHLNTCITMSSDSATNENNESQMKNNNNNNVSSWASKGSNNLARLRLKRNNHNGIINNNKDNENEPSLASLISPRHSRLLDRWAARQAREMVSNLENETELLSIDNTNNDNNMSEIVRTSSSTSDECSSEKLNLGASSLVQLWEKRLNNSNGSKPNTPMEKTSPTGVTSATCNNENVFVANSPTGGTTATCNNENAFVVEEKRGSELGEGFEGPLSSGNEESFSFSSFTDWESDKTGDQSRLCSVDQSRKNSSESDRVSVADIIKKLTATSQTQSSPPSSGDDNDHEGCGGSSVASSPRKDFAPELSEQRAFPQVTCSKRIRGRRAFNDLLMQLERDRHGELKNLAERGTVSKFAQKGRIQALLRLKLLRGAAANVPSHQKSTSSEVNRQVQPYGSAIMQLRKNFSIRAKERNTVQAEVVNTRSPPKEIVNTQLQNSTTADQISKDTSGQIVHGTVSHAIELTKSETQTREEDHPSSTVMSQETCFEAQRDYCEETSEETASITDSNFNEKKEINQQNDENSYDCAVEEEGSNQNYAESSYEEMVEENYDENNYDWISEISRPRSYWEERRQAWYREMLDTGSPNEDIQVLLQRRTVSTFLSSGFRETMDRLMQSHKGTQTHLVSSQDDEIDNEGLMAFFQEHLYPGRSPQENGTDRTVDEEEERVNEEEEEKQDEKDREEEQGGESLVSSSLVSSLCHEIGDYSNQSSSWSYRDNEVGDDFDRVASTSSQPYQSQSSYHDNRPNSSSTNHHSIEMDLIYDMRGHMEQLYQEMSELRKSIKSCMDMQMQMQLQKSNNQRVQTAEKEEKKSHNKTGKKGNCCICHEMKVDSVLYRCGHMCACLKCANDLRWTNGKCPICRAKIDDVVRVYLEV*