Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268770 | QCO73417.1 | 88.360 | 378 | 28 | 2 | 1 | 362 | 590 | 967 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268770 | sp|P12227|RPOC2_PEA | 80.000 | 380 | 57 | 5 | 1 | 363 | 385 | 762 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268770 | A0A4P8F1Q5 | 88.360 | 378 | 28 | 2 | 1 | 362 | 590 | 967 | 0.0 | 643 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0268560 | Msa0268770 | 0.809604 | 1.742685e-50 | -8.615850e-47 |
| Msa0268580 | Msa0268770 | 0.808692 | 2.733032e-50 | -8.615850e-47 |
| Msa0268630 | Msa0268770 | 0.800318 | 1.524582e-48 | -8.615850e-47 |
| Msa0268740 | Msa0268770 | 0.819420 | 1.172212e-52 | -8.615850e-47 |
| Msa0268770 | Msa0268830 | 0.819631 | 1.049156e-52 | -8.615850e-47 |
| Msa0268770 | Msa0268950 | 0.800364 | 1.492120e-48 | -8.615850e-47 |
| Msa0268770 | Msa0268970 | 0.859844 | 3.121226e-63 | -8.615850e-47 |
| Msa0268770 | Msa0269040 | 0.827255 | 1.730615e-54 | -8.615850e-47 |
| Msa0268770 | Msa0269050 | 0.800308 | 1.531871e-48 | -8.615850e-47 |
| Msa0268770 | Msa0344190 | 0.814586 | 1.428759e-51 | -8.615850e-47 |
| Msa0268770 | Msa0344310 | 0.830834 | 2.348554e-55 | -8.615850e-47 |
| Msa0268770 | Msa0582510 | 0.821841 | 3.258565e-53 | -8.615850e-47 |
| Msa0268770 | Msa0582520 | 0.804514 | 2.082796e-49 | -8.615850e-47 |
| Msa0268770 | Msa0582640 | 0.812159 | 4.876885e-51 | -8.615850e-47 |
| Msa0268770 | Msa0582660 | 0.801613 | 8.291833e-49 | -8.615850e-47 |
| Msa0268770 | Msa0582690 | 0.823710 | 1.196049e-53 | -8.615850e-47 |
| Msa0268770 | Msa0582760 | 0.806675 | 7.331631e-50 | -8.615850e-47 |
| Msa0268770 | Msa0582810 | 0.813588 | 2.372932e-51 | -8.615850e-47 |
| Msa0268770 | Msa0582910 | 0.824827 | 6.535895e-54 | -8.615850e-47 |
| Msa0268770 | Msa0582930 | 0.800777 | 1.229020e-48 | -8.615850e-47 |
| Msa0268770 | Msa0591380 | 0.808248 | 3.400001e-50 | -8.615850e-47 |
| Msa0268770 | Msa0908720 | 0.802435 | 5.618460e-49 | -8.615850e-47 |
| Msa0268770 | Msa0924870 | 0.824315 | 8.626821e-54 | -8.615850e-47 |
| Msa0268770 | Msa0931070 | 0.813422 | 2.580143e-51 | -8.615850e-47 |
| Msa0268770 | Msa0931130 | 0.810451 | 1.145178e-50 | -8.615850e-47 |
| Msa0268770 | Msa0931220 | 0.825688 | 4.089894e-54 | -8.615850e-47 |
| Msa0268770 | Msa0931240 | 0.812700 | 3.715075e-51 | -8.615850e-47 |
| Msa0268770 | Msa0931260 | 0.822318 | 2.526225e-53 | -8.615850e-47 |
| Msa0268770 | Msa1086080 | 0.815841 | 7.519466e-52 | -8.615850e-47 |
| Msa0268770 | Msa1086100 | 0.809230 | 2.096792e-50 | -8.615850e-47 |
| Msa0268770 | Msa1086140 | 0.812817 | 3.503189e-51 | -8.615850e-47 |
| Msa0268770 | Msa1086150 | 0.801233 | 9.919790e-49 | -8.615850e-47 |
| Msa0268770 | Msa1086190 | 0.824837 | 6.502415e-54 | -8.615850e-47 |
| Msa0268770 | Msa1086210 | 0.807378 | 5.203643e-50 | -8.615850e-47 |
| Msa0268770 | Msa1086270 | 0.801974 | 6.988606e-49 | -8.615850e-47 |
| Msa0268770 | Msa1086470 | 0.802123 | 6.514816e-49 | -8.615850e-47 |
| Msa0268770 | Msa1086890 | 0.805098 | 1.572671e-49 | -8.615850e-47 |
| Msa0268770 | Msa1143160 | 0.814858 | 1.243542e-51 | -8.615850e-47 |
| Msa0268770 | Msa1305090 | 0.843505 | 1.344900e-58 | -8.615850e-47 |
| Msa0268770 | Msa1354910 | 0.803998 | 2.667333e-49 | -8.615850e-47 |
| Msa0268770 | Msa1354930 | 0.811279 | 7.578791e-51 | -8.615850e-47 |
| Msa0268770 | Msa1355080 | 0.813130 | 2.990898e-51 | -8.615850e-47 |
| Msa0268770 | Msa1355100 | 0.816445 | 5.509546e-52 | -8.615850e-47 |
| Msa0268770 | Msa1380600 | 0.810714 | 1.004682e-50 | -8.615850e-47 |
| Msa0268770 | Msa1380620 | 0.829923 | 3.922156e-55 | -8.615850e-47 |
| Msa0268770 | Msa1394040 | 0.836378 | 9.691028e-57 | -8.615850e-47 |
| Msa0268770 | Msa1394150 | 0.824932 | 6.172400e-54 | -8.615850e-47 |
| Msa0268770 | Msa1394210 | 0.802479 | 5.502406e-49 | -8.615850e-47 |
| Msa0268770 | Msa1394230 | 0.803016 | 4.263220e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268770 | MtrunA17_CPg0493001 | 85.714 | 371 | 37 | 2 | 1 | 355 | 594 | 964 | 0.0 | 616 |
| Msa0268770 | MtrunA17_Chr4g0016671 | 85.714 | 371 | 37 | 2 | 1 | 355 | 594 | 964 | 0.0 | 616 |
| Msa0268770 | MtrunA17_Chr4g0015591 | 84.225 | 355 | 13 | 1 | 1 | 355 | 45 | 356 | 0.0 | 578 |
| Msa0268770 | MtrunA17_Chr3g0095741 | 80.899 | 267 | 36 | 2 | 1 | 252 | 207 | 473 | 2.29e-139 | 404 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268770 | ATCG00170.1 | 60.477 | 377 | 124 | 5 | 4 | 363 | 595 | 963 | 2.99e-135 | 418 |
Find 66 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACTTTGATTTGGTATTT+TGG | 0.149348 | 2_2:+70392125 | None:intergenic |
| TACGAATAGTTCCGTGATTT+TGG | 0.168127 | 2_2:+70391329 | None:intergenic |
| GTTGTCAATTATATTCTTTA+TGG | 0.179224 | 2_2:-70391664 | Msa0268770:CDS |
| TATCCCTCTCTCCGGGAAAA+TGG | 0.265071 | 2_2:+70391917 | None:intergenic |
| CTCTTTCCTGGAATAGATCT+TGG | 0.281882 | 2_2:+70391704 | None:intergenic |
| AATTATATTCTTTATGGAAA+TGG | 0.289554 | 2_2:-70391658 | Msa0268770:CDS |
| AGAAATGACCCATCTGGTTT+AGG | 0.294953 | 2_2:-70391439 | Msa0268770:CDS |
| GGACTTGTTTAGTCTTGAAT+TGG | 0.302268 | 2_2:-70391591 | Msa0268770:CDS |
| GGTATTTCATATAAAATTAC+AGG | 0.304228 | 2_2:+70391757 | None:intergenic |
| GTTCCAGATTATCTCTTTCC+TGG | 0.315965 | 2_2:+70391692 | None:intergenic |
| AAAATCGATCTACTTTGATT+TGG | 0.319610 | 2_2:+70392117 | None:intergenic |
| TATGTTGTTGAATAGAAATA+AGG | 0.351435 | 2_2:-70391308 | Msa0268770:CDS |
| CTTCTTATATTGAAAGTGAT+TGG | 0.363141 | 2_2:+70392011 | None:intergenic |
| ATTCCAGGAAAGAGATAATC+TGG | 0.369993 | 2_2:-70391695 | Msa0268770:CDS |
| GGTAAAATATGCACTTCTTC+GGG | 0.379845 | 2_2:+70392086 | None:intergenic |
| GAAATAAGGAATGCCGATCT+TGG | 0.386359 | 2_2:-70391294 | Msa0268770:CDS |
| GGGTAAAATATGCACTTCTT+CGG | 0.392587 | 2_2:+70392085 | None:intergenic |
| TCTTTCCTGGAATAGATCTT+GGG | 0.395163 | 2_2:+70391705 | None:intergenic |
| GACTTGTTTAGTCTTGAATT+GGG | 0.395976 | 2_2:-70391590 | Msa0268770:CDS |
| AATAATAGTCTCGTTGGAAT+AGG | 0.398435 | 2_2:-70392038 | Msa0268770:intron |
| TGGAAATGGAAAATCCATTC+GGG | 0.398927 | 2_2:-70391644 | Msa0268770:CDS |
| ATTACTAAATATAGAACTAT+AGG | 0.405919 | 2_2:-70392209 | Msa0268770:CDS |
| AACGAACTAATGCGACCTTC+TGG | 0.414791 | 2_2:-70392326 | None:intergenic |
| ACCATTGATAGGTATTTCAA+TGG | 0.423769 | 2_2:+70392298 | None:intergenic |
| TCTTGGTAGTTGTGATCCAT+TGG | 0.435740 | 2_2:+70391803 | None:intergenic |
| ATGGAAATGGAAAATCCATT+CGG | 0.440917 | 2_2:-70391645 | Msa0268770:CDS |
| CAATACAGAAGACAGAATTC+AGG | 0.444868 | 2_2:-70392233 | Msa0268770:CDS |
| TCCATTGAAATACCTATCAA+TGG | 0.461052 | 2_2:-70392299 | Msa0268770:CDS |
| ACACAAGGATTCAATTAGTT+CGG | 0.470880 | 2_2:-70391612 | Msa0268770:CDS |
| GAATTCTGTCTTCTGTATTG+AGG | 0.475926 | 2_2:+70392236 | None:intergenic |
| TTAGTCTTGAATTGGGATCA+AGG | 0.488756 | 2_2:-70391583 | Msa0268770:CDS |
| TTTGTTGAAGTAAGTACAAA+CGG | 0.490928 | 2_2:-70391523 | Msa0268770:CDS |
| GGATATCTTATCCCTCTCTC+CGG | 0.501160 | 2_2:+70391909 | None:intergenic |
| ACAATGTTAAATATCACAAT+GGG | 0.519777 | 2_2:-70391228 | Msa0268770:CDS |
| TGATATTTAACATTGTTGAA+TGG | 0.522425 | 2_2:+70391235 | None:intergenic |
| TATCAAGATAGAACTGTGTC+GGG | 0.526561 | 2_2:+70391888 | None:intergenic |
| TTTACAAAATCGATACTGTC+CGG | 0.535842 | 2_2:+70391736 | None:intergenic |
| ATTGATCGCGGATAATGAAT+CGG | 0.540104 | 2_2:-70391416 | Msa0268770:CDS |
| ACTTACTTCAACAAAGGAAG+AGG | 0.540450 | 2_2:+70391531 | None:intergenic |
| TTCGGGGAATTTCCGACACA+AGG | 0.543374 | 2_2:-70391627 | Msa0268770:CDS |
| ATGACAAAATTATCCAAGAT+CGG | 0.543980 | 2_2:+70391281 | None:intergenic |
| GTACGGAATAATAGTCTCGT+TGG | 0.546841 | 2_2:-70392044 | Msa0268770:intron |
| AACAATGTTAAATATCACAA+TGG | 0.560038 | 2_2:-70391229 | Msa0268770:CDS |
| GTTTGTACTTACTTCAACAA+AGG | 0.560389 | 2_2:+70391525 | None:intergenic |
| GCGATCAATCCTAAACCAGA+TGG | 0.564364 | 2_2:+70391430 | None:intergenic |
| GTATCAAGATAGAACTGTGT+CGG | 0.565364 | 2_2:+70391887 | None:intergenic |
| AAGAAGTCGAGTAGGCGGAT+TGG | 0.565820 | 2_2:-70391994 | Msa0268770:CDS |
| ATAATTGGATCTATGTCCAA+TGG | 0.570241 | 2_2:-70391819 | Msa0268770:CDS |
| GATATCTTATCCCTCTCTCC+GGG | 0.575421 | 2_2:+70391910 | None:intergenic |
| GAAGATTTCATTGAGTATCG+AGG | 0.578377 | 2_2:-70392164 | Msa0268770:CDS |
| AACTAATTGAATCCTTGTGT+CGG | 0.584495 | 2_2:+70391615 | None:intergenic |
| TGTGTCGGAAATTCCCCGAA+TGG | 0.589742 | 2_2:+70391630 | None:intergenic |
| CTTTCCTGGAATAGATCTTG+GGG | 0.594381 | 2_2:+70391706 | None:intergenic |
| CTTACTTCAACAAAGGAAGA+GGG | 0.610881 | 2_2:+70391532 | None:intergenic |
| TACTTCAACAAAGGAAGAGG+GGG | 0.611335 | 2_2:+70391534 | None:intergenic |
| CGATCAATCCTAAACCAGAT+GGG | 0.613760 | 2_2:+70391431 | None:intergenic |
| TATCTTGATACCACCCGGAA+CGG | 0.614773 | 2_2:-70391875 | Msa0268770:CDS |
| AATATAAGAAGTCGAGTAGG+CGG | 0.636144 | 2_2:-70391999 | Msa0268770:CDS |
| AAATCACTTAGCCAAAATCA+CGG | 0.641309 | 2_2:-70391340 | Msa0268770:CDS |
| ATCTGGTTTAGGATTGATCG+CGG | 0.648560 | 2_2:-70391428 | Msa0268770:CDS |
| TTCAATATAAGAAGTCGAGT+AGG | 0.655266 | 2_2:-70392002 | Msa0268770:CDS |
| AGTTCTATCTTGATACCACC+CGG | 0.660030 | 2_2:-70391880 | Msa0268770:CDS |
| ATTTCAATGGAAACACCAGA+AGG | 0.673294 | 2_2:+70392311 | None:intergenic |
| TCGCGGATAATGAATCGGAT+CGG | 0.674619 | 2_2:-70391411 | Msa0268770:CDS |
| TTACTTCAACAAAGGAAGAG+GGG | 0.682642 | 2_2:+70391533 | None:intergenic |
| GGAAATGGAAAATCCATTCG+GGG | 0.695544 | 2_2:-70391643 | Msa0268770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTCTTTTCTAAT+CGG | + | chr2_2:70391551-70391570 | None:intergenic | 10.0% |
| !! | AATCAAAAAAAATTCATAAT+TGG | - | chr2_2:70391684-70391703 | Msa0268770:CDS | 10.0% |
| !!! | TTTTTTTTTTCTTTTCTAAT+CGG | + | chr2_2:70391551-70391570 | None:intergenic | 10.0% |
| !! | AATCAAAAAAAATTCATAAT+TGG | - | chr2_2:70391684-70391703 | Msa0268770:CDS | 10.0% |
| !! | ATTACTAAATATAGAACTAT+AGG | - | chr2_2:70391309-70391328 | Msa0268770:CDS | 15.0% |
| !!! | ATCGAATTAAAAATATTTTC+TGG | - | chr2_2:70391572-70391591 | Msa0268770:CDS | 15.0% |
| !!! | TGTAATTTTATATGAAATAC+CGG | - | chr2_2:70391763-70391782 | Msa0268770:CDS | 15.0% |
| !! | AATTATATTCTTTATGGAAA+TGG | - | chr2_2:70391860-70391879 | Msa0268770:CDS | 15.0% |
| !! | ATTACTAAATATAGAACTAT+AGG | - | chr2_2:70391309-70391328 | Msa0268770:CDS | 15.0% |
| !!! | ATCGAATTAAAAATATTTTC+TGG | - | chr2_2:70391572-70391591 | Msa0268770:CDS | 15.0% |
| !!! | TGTAATTTTATATGAAATAC+CGG | - | chr2_2:70391763-70391782 | Msa0268770:CDS | 15.0% |
| !! | AATTATATTCTTTATGGAAA+TGG | - | chr2_2:70391860-70391879 | Msa0268770:CDS | 15.0% |
| !!! | GAAATCTTCTTTTTGAAAAA+CGG | + | chr2_2:70391343-70391362 | None:intergenic | 20.0% |
| !!! | CAAAACAAAATACTTTTTCT+TGG | + | chr2_2:70391735-70391754 | None:intergenic | 20.0% |
| !!! | CAAGAAAAAGTATTTTGTTT+TGG | - | chr2_2:70391733-70391752 | Msa0268770:CDS | 20.0% |
| !!! | AAAAGTATTTTGTTTTGGTT+CGG | - | chr2_2:70391738-70391757 | Msa0268770:CDS | 20.0% |
| !! | GGTATTTCATATAAAATTAC+AGG | + | chr2_2:70391764-70391783 | None:intergenic | 20.0% |
| !! | GTTGTCAATTATATTCTTTA+TGG | - | chr2_2:70391854-70391873 | Msa0268770:CDS | 20.0% |
| !! | TTGGAATGAATAGAAAAAAA+TGG | + | chr2_2:70392145-70392164 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTATTCATTCCA+AGG | - | chr2_2:70392144-70392163 | Msa0268770:CDS | 20.0% |
| !!! | TGATTTTTTAATTTTTGCCT+TGG | + | chr2_2:70392164-70392183 | None:intergenic | 20.0% |
| !! | TATGTTGTTGAATAGAAATA+AGG | - | chr2_2:70392210-70392229 | Msa0268770:CDS | 20.0% |
| !! | TGATATTTAACATTGTTGAA+TGG | + | chr2_2:70392286-70392305 | None:intergenic | 20.0% |
| !! | AACAATGTTAAATATCACAA+TGG | - | chr2_2:70392289-70392308 | Msa0268770:CDS | 20.0% |
| !! | ACAATGTTAAATATCACAAT+GGG | - | chr2_2:70392290-70392309 | Msa0268770:CDS | 20.0% |
| !!! | GAAATCTTCTTTTTGAAAAA+CGG | + | chr2_2:70391343-70391362 | None:intergenic | 20.0% |
| !!! | CAAAACAAAATACTTTTTCT+TGG | + | chr2_2:70391735-70391754 | None:intergenic | 20.0% |
| !!! | CAAGAAAAAGTATTTTGTTT+TGG | - | chr2_2:70391733-70391752 | Msa0268770:CDS | 20.0% |
| !!! | AAAAGTATTTTGTTTTGGTT+CGG | - | chr2_2:70391738-70391757 | Msa0268770:CDS | 20.0% |
| !! | GGTATTTCATATAAAATTAC+AGG | + | chr2_2:70391764-70391783 | None:intergenic | 20.0% |
| !! | GTTGTCAATTATATTCTTTA+TGG | - | chr2_2:70391854-70391873 | Msa0268770:CDS | 20.0% |
| !! | TTGGAATGAATAGAAAAAAA+TGG | + | chr2_2:70392145-70392164 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTATTCATTCCA+AGG | - | chr2_2:70392144-70392163 | Msa0268770:CDS | 20.0% |
| !!! | TGATTTTTTAATTTTTGCCT+TGG | + | chr2_2:70392164-70392183 | None:intergenic | 20.0% |
| !! | TATGTTGTTGAATAGAAATA+AGG | - | chr2_2:70392210-70392229 | Msa0268770:CDS | 20.0% |
| !! | TGATATTTAACATTGTTGAA+TGG | + | chr2_2:70392286-70392305 | None:intergenic | 20.0% |
| !! | AACAATGTTAAATATCACAA+TGG | - | chr2_2:70392289-70392308 | Msa0268770:CDS | 20.0% |
| !! | ACAATGTTAAATATCACAAT+GGG | - | chr2_2:70392290-70392309 | Msa0268770:CDS | 20.0% |
| ! | CTATGAAAAATACCATTGAT+AGG | + | chr2_2:70391234-70391253 | None:intergenic | 25.0% |
| !!! | TCTACTTTGATTTGGTATTT+TGG | + | chr2_2:70391396-70391415 | None:intergenic | 25.0% |
| ! | AAAATCGATCTACTTTGATT+TGG | + | chr2_2:70391404-70391423 | None:intergenic | 25.0% |
| ! | CTTCTTATATTGAAAGTGAT+TGG | + | chr2_2:70391510-70391529 | None:intergenic | 25.0% |
| ! | AACGGTAAAAAAAAAATGGA+AGG | - | chr2_2:70391661-70391680 | Msa0268770:CDS | 25.0% |
| !!! | CAAAAAAAGTACTTCTATTG+AGG | - | chr2_2:70391958-70391977 | Msa0268770:CDS | 25.0% |
| ! | TTTGTTGAAGTAAGTACAAA+CGG | - | chr2_2:70391995-70392014 | Msa0268770:CDS | 25.0% |
| ! | ATGACAAAATTATCCAAGAT+CGG | + | chr2_2:70392240-70392259 | None:intergenic | 25.0% |
| ! | CTATGAAAAATACCATTGAT+AGG | + | chr2_2:70391234-70391253 | None:intergenic | 25.0% |
| !!! | TCTACTTTGATTTGGTATTT+TGG | + | chr2_2:70391396-70391415 | None:intergenic | 25.0% |
| ! | AAAATCGATCTACTTTGATT+TGG | + | chr2_2:70391404-70391423 | None:intergenic | 25.0% |
| ! | CTTCTTATATTGAAAGTGAT+TGG | + | chr2_2:70391510-70391529 | None:intergenic | 25.0% |
| ! | AACGGTAAAAAAAAAATGGA+AGG | - | chr2_2:70391661-70391680 | Msa0268770:CDS | 25.0% |
| !!! | CAAAAAAAGTACTTCTATTG+AGG | - | chr2_2:70391958-70391977 | Msa0268770:CDS | 25.0% |
| ! | TTTGTTGAAGTAAGTACAAA+CGG | - | chr2_2:70391995-70392014 | Msa0268770:CDS | 25.0% |
| ! | ATGACAAAATTATCCAAGAT+CGG | + | chr2_2:70392240-70392259 | None:intergenic | 25.0% |
| TCCATTGAAATACCTATCAA+TGG | - | chr2_2:70391219-70391238 | Msa0268770:CDS | 30.0% | |
| ACCATTGATAGGTATTTCAA+TGG | + | chr2_2:70391223-70391242 | None:intergenic | 30.0% | |
| TACCATTATGGAAGAAGATT+CGG | + | chr2_2:70391457-70391476 | None:intergenic | 30.0% | |
| AATCTTCTTCCATAATGGTA+CGG | - | chr2_2:70391457-70391476 | Msa0268770:CDS | 30.0% | |
| ACTATTATTCCGTACCATTA+TGG | + | chr2_2:70391469-70391488 | None:intergenic | 30.0% | |
| AATAATAGTCTCGTTGGAAT+AGG | - | chr2_2:70391480-70391499 | Msa0268770:CDS | 30.0% | |
| TTCAATATAAGAAGTCGAGT+AGG | - | chr2_2:70391516-70391535 | Msa0268770:CDS | 30.0% | |
| !!! | CATTTTTTTTTTACCGTTCC+GGG | + | chr2_2:70391659-70391678 | None:intergenic | 30.0% |
| !!! | CCATTTTTTTTTTACCGTTC+CGG | + | chr2_2:70391660-70391679 | None:intergenic | 30.0% |
| ATAATTGGATCTATGTCCAA+TGG | - | chr2_2:70391699-70391718 | Msa0268770:CDS | 30.0% | |
| TTTACAAAATCGATACTGTC+CGG | + | chr2_2:70391785-70391804 | None:intergenic | 30.0% | |
| ATGGAAATGGAAAATCCATT+CGG | - | chr2_2:70391873-70391892 | Msa0268770:CDS | 30.0% | |
| AACTAATTGAATCCTTGTGT+CGG | + | chr2_2:70391906-70391925 | None:intergenic | 30.0% | |
| ACACAAGGATTCAATTAGTT+CGG | - | chr2_2:70391906-70391925 | Msa0268770:CDS | 30.0% | |
| !! | GACTTGTTTAGTCTTGAATT+GGG | - | chr2_2:70391928-70391947 | Msa0268770:CDS | 30.0% |
| !! | AAAAAGTACTTCTATTGAGG+AGG | - | chr2_2:70391961-70391980 | Msa0268770:CDS | 30.0% |
| GTTTGTACTTACTTCAACAA+AGG | + | chr2_2:70391996-70392015 | None:intergenic | 30.0% | |
| AAATCACTTAGCCAAAATCA+CGG | - | chr2_2:70392178-70392197 | Msa0268770:CDS | 30.0% | |
| TCCATTGAAATACCTATCAA+TGG | - | chr2_2:70391219-70391238 | Msa0268770:CDS | 30.0% | |
| ACCATTGATAGGTATTTCAA+TGG | + | chr2_2:70391223-70391242 | None:intergenic | 30.0% | |
| TACCATTATGGAAGAAGATT+CGG | + | chr2_2:70391457-70391476 | None:intergenic | 30.0% | |
| AATCTTCTTCCATAATGGTA+CGG | - | chr2_2:70391457-70391476 | Msa0268770:CDS | 30.0% | |
| ACTATTATTCCGTACCATTA+TGG | + | chr2_2:70391469-70391488 | None:intergenic | 30.0% | |
| AATAATAGTCTCGTTGGAAT+AGG | - | chr2_2:70391480-70391499 | Msa0268770:CDS | 30.0% | |
| TTCAATATAAGAAGTCGAGT+AGG | - | chr2_2:70391516-70391535 | Msa0268770:CDS | 30.0% | |
| !!! | CATTTTTTTTTTACCGTTCC+GGG | + | chr2_2:70391659-70391678 | None:intergenic | 30.0% |
| !!! | CCATTTTTTTTTTACCGTTC+CGG | + | chr2_2:70391660-70391679 | None:intergenic | 30.0% |
| ATAATTGGATCTATGTCCAA+TGG | - | chr2_2:70391699-70391718 | Msa0268770:CDS | 30.0% | |
| TTTACAAAATCGATACTGTC+CGG | + | chr2_2:70391785-70391804 | None:intergenic | 30.0% | |
| ATGGAAATGGAAAATCCATT+CGG | - | chr2_2:70391873-70391892 | Msa0268770:CDS | 30.0% | |
| AACTAATTGAATCCTTGTGT+CGG | + | chr2_2:70391906-70391925 | None:intergenic | 30.0% | |
| ACACAAGGATTCAATTAGTT+CGG | - | chr2_2:70391906-70391925 | Msa0268770:CDS | 30.0% | |
| !! | GACTTGTTTAGTCTTGAATT+GGG | - | chr2_2:70391928-70391947 | Msa0268770:CDS | 30.0% |
| !! | AAAAAGTACTTCTATTGAGG+AGG | - | chr2_2:70391961-70391980 | Msa0268770:CDS | 30.0% |
| GTTTGTACTTACTTCAACAA+AGG | + | chr2_2:70391996-70392015 | None:intergenic | 30.0% | |
| AAATCACTTAGCCAAAATCA+CGG | - | chr2_2:70392178-70392197 | Msa0268770:CDS | 30.0% | |
| ATTTCAATGGAAACACCAGA+AGG | + | chr2_2:70391210-70391229 | None:intergenic | 35.0% | |
| GAATTCTGTCTTCTGTATTG+AGG | + | chr2_2:70391285-70391304 | None:intergenic | 35.0% | |
| CAATACAGAAGACAGAATTC+AGG | - | chr2_2:70391285-70391304 | Msa0268770:CDS | 35.0% | |
| ! | GAAGATTTCATTGAGTATCG+AGG | - | chr2_2:70391354-70391373 | Msa0268770:CDS | 35.0% |
| GGTAAAATATGCACTTCTTC+GGG | + | chr2_2:70391435-70391454 | None:intergenic | 35.0% | |
| GGGTAAAATATGCACTTCTT+CGG | + | chr2_2:70391436-70391455 | None:intergenic | 35.0% | |
| ACCATTATGGAAGAAGATTC+GGG | + | chr2_2:70391456-70391475 | None:intergenic | 35.0% | |
| AATATAAGAAGTCGAGTAGG+CGG | - | chr2_2:70391519-70391538 | Msa0268770:CDS | 35.0% | |
| ! | TCTGGAAATATCCATTTTCC+CGG | - | chr2_2:70391590-70391609 | Msa0268770:CDS | 35.0% |
| TATCAAGATAGAACTGTGTC+GGG | + | chr2_2:70391633-70391652 | None:intergenic | 35.0% | |
| GTATCAAGATAGAACTGTGT+CGG | + | chr2_2:70391634-70391653 | None:intergenic | 35.0% | |
| CCGGAACGGTAAAAAAAAAA+TGG | - | chr2_2:70391657-70391676 | Msa0268770:CDS | 35.0% | |
| TCTTTCCTGGAATAGATCTT+GGG | + | chr2_2:70391816-70391835 | None:intergenic | 35.0% | |
| ATTCCAGGAAAGAGATAATC+TGG | - | chr2_2:70391823-70391842 | Msa0268770:CDS | 35.0% | |
| TGGAAATGGAAAATCCATTC+GGG | - | chr2_2:70391874-70391893 | Msa0268770:CDS | 35.0% | |
| !! | GGACTTGTTTAGTCTTGAAT+TGG | - | chr2_2:70391927-70391946 | Msa0268770:CDS | 35.0% |
| !! | TTAGTCTTGAATTGGGATCA+AGG | - | chr2_2:70391935-70391954 | Msa0268770:CDS | 35.0% |
| TTACTTCAACAAAGGAAGAG+GGG | + | chr2_2:70391988-70392007 | None:intergenic | 35.0% | |
| CTTACTTCAACAAAGGAAGA+GGG | + | chr2_2:70391989-70392008 | None:intergenic | 35.0% | |
| ACTTACTTCAACAAAGGAAG+AGG | + | chr2_2:70391990-70392009 | None:intergenic | 35.0% | |
| AGAAAAAGAAATGACCCATC+TGG | - | chr2_2:70392073-70392092 | Msa0268770:intron | 35.0% | |
| ATTGATCGCGGATAATGAAT+CGG | - | chr2_2:70392102-70392121 | Msa0268770:CDS | 35.0% | |
| ! | TACGAATAGTTCCGTGATTT+TGG | + | chr2_2:70392192-70392211 | None:intergenic | 35.0% |
| ATTTCAATGGAAACACCAGA+AGG | + | chr2_2:70391210-70391229 | None:intergenic | 35.0% | |
| GAATTCTGTCTTCTGTATTG+AGG | + | chr2_2:70391285-70391304 | None:intergenic | 35.0% | |
| CAATACAGAAGACAGAATTC+AGG | - | chr2_2:70391285-70391304 | Msa0268770:CDS | 35.0% | |
| ! | GAAGATTTCATTGAGTATCG+AGG | - | chr2_2:70391354-70391373 | Msa0268770:CDS | 35.0% |
| GGTAAAATATGCACTTCTTC+GGG | + | chr2_2:70391435-70391454 | None:intergenic | 35.0% | |
| GGGTAAAATATGCACTTCTT+CGG | + | chr2_2:70391436-70391455 | None:intergenic | 35.0% | |
| ACCATTATGGAAGAAGATTC+GGG | + | chr2_2:70391456-70391475 | None:intergenic | 35.0% | |
| AATATAAGAAGTCGAGTAGG+CGG | - | chr2_2:70391519-70391538 | Msa0268770:CDS | 35.0% | |
| ! | TCTGGAAATATCCATTTTCC+CGG | - | chr2_2:70391590-70391609 | Msa0268770:CDS | 35.0% |
| TATCAAGATAGAACTGTGTC+GGG | + | chr2_2:70391633-70391652 | None:intergenic | 35.0% | |
| GTATCAAGATAGAACTGTGT+CGG | + | chr2_2:70391634-70391653 | None:intergenic | 35.0% | |
| CCGGAACGGTAAAAAAAAAA+TGG | - | chr2_2:70391657-70391676 | Msa0268770:CDS | 35.0% | |
| TCTTTCCTGGAATAGATCTT+GGG | + | chr2_2:70391816-70391835 | None:intergenic | 35.0% | |
| ATTCCAGGAAAGAGATAATC+TGG | - | chr2_2:70391823-70391842 | Msa0268770:CDS | 35.0% | |
| TGGAAATGGAAAATCCATTC+GGG | - | chr2_2:70391874-70391893 | Msa0268770:CDS | 35.0% | |
| !! | GGACTTGTTTAGTCTTGAAT+TGG | - | chr2_2:70391927-70391946 | Msa0268770:CDS | 35.0% |
| !! | TTAGTCTTGAATTGGGATCA+AGG | - | chr2_2:70391935-70391954 | Msa0268770:CDS | 35.0% |
| TTACTTCAACAAAGGAAGAG+GGG | + | chr2_2:70391988-70392007 | None:intergenic | 35.0% | |
| CTTACTTCAACAAAGGAAGA+GGG | + | chr2_2:70391989-70392008 | None:intergenic | 35.0% | |
| ACTTACTTCAACAAAGGAAG+AGG | + | chr2_2:70391990-70392009 | None:intergenic | 35.0% | |
| AGAAAAAGAAATGACCCATC+TGG | - | chr2_2:70392073-70392092 | Msa0268770:intron | 35.0% | |
| ATTGATCGCGGATAATGAAT+CGG | - | chr2_2:70392102-70392121 | Msa0268770:CDS | 35.0% | |
| ! | TACGAATAGTTCCGTGATTT+TGG | + | chr2_2:70392192-70392211 | None:intergenic | 35.0% |
| ACCCGAATCTTCTTCCATAA+TGG | - | chr2_2:70391452-70391471 | Msa0268770:CDS | 40.0% | |
| GTACGGAATAATAGTCTCGT+TGG | - | chr2_2:70391474-70391493 | Msa0268770:CDS | 40.0% | |
| AGTTCTATCTTGATACCACC+CGG | - | chr2_2:70391638-70391657 | Msa0268770:CDS | 40.0% | |
| !!! | TTTTTTTTTACCGTTCCGGG+TGG | + | chr2_2:70391656-70391675 | None:intergenic | 40.0% |
| ! | TCTTGGTAGTTGTGATCCAT+TGG | + | chr2_2:70391718-70391737 | None:intergenic | 40.0% |
| ! | TTTTCCCCAAGATCTATTCC+AGG | - | chr2_2:70391808-70391827 | Msa0268770:CDS | 40.0% |
| CTTTCCTGGAATAGATCTTG+GGG | + | chr2_2:70391815-70391834 | None:intergenic | 40.0% | |
| CTCTTTCCTGGAATAGATCT+TGG | + | chr2_2:70391817-70391836 | None:intergenic | 40.0% | |
| GTTCCAGATTATCTCTTTCC+TGG | + | chr2_2:70391829-70391848 | None:intergenic | 40.0% | |
| GGAAATGGAAAATCCATTCG+GGG | - | chr2_2:70391875-70391894 | Msa0268770:CDS | 40.0% | |
| TACTTCAACAAAGGAAGAGG+GGG | + | chr2_2:70391987-70392006 | None:intergenic | 40.0% | |
| ! | AGAAATGACCCATCTGGTTT+AGG | - | chr2_2:70392079-70392098 | Msa0268770:intron | 40.0% |
| CGATCAATCCTAAACCAGAT+GGG | + | chr2_2:70392090-70392109 | None:intergenic | 40.0% | |
| ! | ATCTGGTTTAGGATTGATCG+CGG | - | chr2_2:70392090-70392109 | Msa0268770:intron | 40.0% |
| GAAATAAGGAATGCCGATCT+TGG | - | chr2_2:70392224-70392243 | Msa0268770:CDS | 40.0% | |
| ACCCGAATCTTCTTCCATAA+TGG | - | chr2_2:70391452-70391471 | Msa0268770:CDS | 40.0% | |
| GTACGGAATAATAGTCTCGT+TGG | - | chr2_2:70391474-70391493 | Msa0268770:CDS | 40.0% | |
| AGTTCTATCTTGATACCACC+CGG | - | chr2_2:70391638-70391657 | Msa0268770:CDS | 40.0% | |
| !!! | TTTTTTTTTACCGTTCCGGG+TGG | + | chr2_2:70391656-70391675 | None:intergenic | 40.0% |
| ! | TCTTGGTAGTTGTGATCCAT+TGG | + | chr2_2:70391718-70391737 | None:intergenic | 40.0% |
| ! | TTTTCCCCAAGATCTATTCC+AGG | - | chr2_2:70391808-70391827 | Msa0268770:CDS | 40.0% |
| CTTTCCTGGAATAGATCTTG+GGG | + | chr2_2:70391815-70391834 | None:intergenic | 40.0% | |
| CTCTTTCCTGGAATAGATCT+TGG | + | chr2_2:70391817-70391836 | None:intergenic | 40.0% | |
| GTTCCAGATTATCTCTTTCC+TGG | + | chr2_2:70391829-70391848 | None:intergenic | 40.0% | |
| GGAAATGGAAAATCCATTCG+GGG | - | chr2_2:70391875-70391894 | Msa0268770:CDS | 40.0% | |
| TACTTCAACAAAGGAAGAGG+GGG | + | chr2_2:70391987-70392006 | None:intergenic | 40.0% | |
| ! | AGAAATGACCCATCTGGTTT+AGG | - | chr2_2:70392079-70392098 | Msa0268770:intron | 40.0% |
| CGATCAATCCTAAACCAGAT+GGG | + | chr2_2:70392090-70392109 | None:intergenic | 40.0% | |
| ! | ATCTGGTTTAGGATTGATCG+CGG | - | chr2_2:70392090-70392109 | Msa0268770:intron | 40.0% |
| GAAATAAGGAATGCCGATCT+TGG | - | chr2_2:70392224-70392243 | Msa0268770:CDS | 40.0% | |
| ! | ATATCCATTTTCCCGGAGAG+AGG | - | chr2_2:70391597-70391616 | Msa0268770:CDS | 45.0% |
| ! | TATCCATTTTCCCGGAGAGA+GGG | - | chr2_2:70391598-70391617 | Msa0268770:CDS | 45.0% |
| GATATCTTATCCCTCTCTCC+GGG | + | chr2_2:70391611-70391630 | None:intergenic | 45.0% | |
| GGATATCTTATCCCTCTCTC+CGG | + | chr2_2:70391612-70391631 | None:intergenic | 45.0% | |
| TATCTTGATACCACCCGGAA+CGG | - | chr2_2:70391643-70391662 | Msa0268770:CDS | 45.0% | |
| GCGATCAATCCTAAACCAGA+TGG | + | chr2_2:70392091-70392110 | None:intergenic | 45.0% | |
| TCGCGGATAATGAATCGGAT+CGG | - | chr2_2:70392107-70392126 | Msa0268770:CDS | 45.0% | |
| ! | ATATCCATTTTCCCGGAGAG+AGG | - | chr2_2:70391597-70391616 | Msa0268770:CDS | 45.0% |
| ! | TATCCATTTTCCCGGAGAGA+GGG | - | chr2_2:70391598-70391617 | Msa0268770:CDS | 45.0% |
| GATATCTTATCCCTCTCTCC+GGG | + | chr2_2:70391611-70391630 | None:intergenic | 45.0% | |
| GGATATCTTATCCCTCTCTC+CGG | + | chr2_2:70391612-70391631 | None:intergenic | 45.0% | |
| TATCTTGATACCACCCGGAA+CGG | - | chr2_2:70391643-70391662 | Msa0268770:CDS | 45.0% | |
| GCGATCAATCCTAAACCAGA+TGG | + | chr2_2:70392091-70392110 | None:intergenic | 45.0% | |
| TCGCGGATAATGAATCGGAT+CGG | - | chr2_2:70392107-70392126 | Msa0268770:CDS | 45.0% | |
| AAGAAGTCGAGTAGGCGGAT+TGG | - | chr2_2:70391524-70391543 | Msa0268770:CDS | 50.0% | |
| TATCCCTCTCTCCGGGAAAA+TGG | + | chr2_2:70391604-70391623 | None:intergenic | 50.0% | |
| TGTGTCGGAAATTCCCCGAA+TGG | + | chr2_2:70391891-70391910 | None:intergenic | 50.0% | |
| TTCGGGGAATTTCCGACACA+AGG | - | chr2_2:70391891-70391910 | Msa0268770:CDS | 50.0% | |
| AAGAAGTCGAGTAGGCGGAT+TGG | - | chr2_2:70391524-70391543 | Msa0268770:CDS | 50.0% | |
| TATCCCTCTCTCCGGGAAAA+TGG | + | chr2_2:70391604-70391623 | None:intergenic | 50.0% | |
| TGTGTCGGAAATTCCCCGAA+TGG | + | chr2_2:70391891-70391910 | None:intergenic | 50.0% | |
| TTCGGGGAATTTCCGACACA+AGG | - | chr2_2:70391891-70391910 | Msa0268770:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 70391201 | 70392339 | 70391201 | ID=Msa0268770;Name=Msa0268770 |
| chr2_2 | mRNA | 70391201 | 70392339 | 70391201 | ID=Msa0268770-mRNA-1;Parent=Msa0268770;Name=Msa0268770-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|2|0|363 |
| chr2_2 | exon | 70392100 | 70392339 | 70392100 | ID=Msa0268770-mRNA-1:exon:22673;Parent=Msa0268770-mRNA-1 |
| chr2_2 | exon | 70391201 | 70392052 | 70391201 | ID=Msa0268770-mRNA-1:exon:22672;Parent=Msa0268770-mRNA-1 |
| chr2_2 | CDS | 70392100 | 70392339 | 70392100 | ID=Msa0268770-mRNA-1:cds;Parent=Msa0268770-mRNA-1 |
| chr2_2 | CDS | 70391201 | 70392052 | 70391201 | ID=Msa0268770-mRNA-1:cds;Parent=Msa0268770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
