AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086890 MtrunA17_CPg0492961 74.405 168 35 2 1 167 22 182 1.53e-79 233
Msa1086890 MtrunA17_Chr4g0016711 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa1086890 MtrunA17_CPg0492971 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa1086890 MtrunA17_Chr4g0015621 96.226 53 2 0 1 53 1 53 1.69e-28 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086890 ATCG00130.1 82.456 114 20 0 51 164 68 181 2.00e-63 193
Msa1086890 ATCG00140.1 90.566 53 5 0 1 53 1 53 3.90e-26 95.5

Find 45 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAAGCAGAGGACAAAATA+AGG 0.270738 7_2:-87609703 Msa1086890:CDS
GTGCTAATATTGATATGTTT+GGG 0.275522 7_2:-87607837 Msa1086890:CDS
GCCGTCGGGCTTGCTTCTAT+TGG 0.311843 7_2:-87609785 Msa1086890:CDS
GCTGCTTCTGTTATCGCTGC+TGG 0.315135 7_2:-87609812 Msa1086890:CDS
GGTGCTAATATTGATATGTT+TGG 0.316362 7_2:-87607838 Msa1086890:CDS
CTACTTTCCTTAAGCGGGCC+CGG 0.340021 7_2:+87608103 None:intergenic
GCTGCAGGGCAAGCTGTAGA+AGG 0.363265 7_2:-87609740 Msa1086890:CDS
TAATTCAATTTATACAACTT+TGG 0.388293 7_2:-87608013 Msa1086890:CDS
AGAAAGCCCGGGCCCGCTTA+AGG 0.414131 7_2:-87608110 Msa1086890:CDS
GCTTCTATTGGACCTGGAGT+TGG 0.416315 7_2:-87609773 Msa1086890:CDS
TCGCTGCTGGGTTGGCCGTC+GGG 0.427770 7_2:-87609799 Msa1086890:CDS
ATCGCTGCTGGGTTGGCCGT+CGG 0.428270 7_2:-87609800 Msa1086890:CDS
CGTTTCTACTTTCCTTAAGC+GGG 0.444690 7_2:+87608098 None:intergenic
GCGGATCGGTTTCGAGTGAA+TGG 0.446998 7_2:-87608072 Msa1086890:CDS
TTCAAAATTCAGAAGAACTA+CGG 0.449969 7_2:-87608155 Msa1086890:intron
GGAAGCAGCCGTTGAACAGC+TGG 0.450450 7_2:-87608133 Msa1086890:CDS
ACAAGCATTACAAGGAGCTC+TGG 0.452163 7_2:-87607908 Msa1086890:CDS
CTGCTTCTGTTATCGCTGCT+GGG 0.461552 7_2:-87609811 Msa1086890:CDS
TACTTTCCTTAAGCGGGCCC+GGG 0.461743 7_2:+87608104 None:intergenic
TTGAACAGCTGGAGAAAGCC+CGG 0.472109 7_2:-87608122 Msa1086890:CDS
GGAAGCAGAGGACAAAATAA+GGG 0.473459 7_2:-87609702 Msa1086890:CDS
AGAAGGGATTGCGCGACAAC+CGG 0.475077 7_2:-87609723 Msa1086890:CDS
GGGCTTGCTTCTATTGGACC+TGG 0.481695 7_2:-87609779 Msa1086890:CDS
GTTGGTCAAGGTACAGCTGC+AGG 0.497139 7_2:-87609755 Msa1086890:CDS
GGCTTTCTCCAGCTGTTCAA+CGG 0.504402 7_2:+87608125 None:intergenic
TCAAAATTCAGAAGAACTAC+GGG 0.510719 7_2:-87608154 Msa1086890:intron
TTCTGTTATCGCTGCTGGGT+TGG 0.514112 7_2:-87609807 Msa1086890:CDS
CCGTTTCTACTTTCCTTAAG+CGG 0.521089 7_2:+87608097 None:intergenic
ATTGGACCTGGAGTTGGTCA+AGG 0.543278 7_2:-87609767 Msa1086890:CDS
TGCGCGACAACCGGAAGCAG+AGG 0.554171 7_2:-87609714 Msa1086890:CDS
CAAGCATTACAAGGAGCTCT+GGG 0.568354 7_2:-87607907 Msa1086890:CDS
AAGTAGAAACGGAAGCGGAT+CGG 0.570689 7_2:-87608086 Msa1086890:CDS
CCGCTTAAGGAAAGTAGAAA+CGG 0.573518 7_2:-87608097 Msa1086890:CDS
TGAACAGCTGGAGAAAGCCC+GGG 0.575165 7_2:-87608121 Msa1086890:CDS
CTGCAGGGCAAGCTGTAGAA+GGG 0.582070 7_2:-87609739 Msa1086890:CDS
TGCTAATATTGATATGTTTG+GGG 0.586102 7_2:-87607836 Msa1086890:CDS
GCTGTACCTTGACCAACTCC+AGG 0.593501 7_2:+87609761 None:intergenic
CGATTAATCAAGTGCAACAG+AGG 0.596922 7_2:-87607939 Msa1086890:CDS
GAGTTACATTTACGTACGAT+CGG 0.617220 7_2:-87607859 Msa1086890:CDS
AAGGAAAGTAGAAACGGAAG+CGG 0.622485 7_2:-87608091 Msa1086890:CDS
TCCAATAGAAGCAAGCCCGA+CGG 0.638086 7_2:+87609784 None:intergenic
ACAGAAGCAGCAGAAATCAG+TGG 0.640161 7_2:+87609824 None:intergenic
TTGGTCAAGGTACAGCTGCA+GGG 0.643472 7_2:-87609754 Msa1086890:CDS
GATTAATCAAGTGCAACAGA+GGG 0.644246 7_2:-87607938 Msa1086890:CDS
GAAGCAGAGGACAAAATAAG+GGG 0.658398 7_2:-87609701 Msa1086890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAGATTAAACAAA+AGG + chr7_2:87608050-87608069 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + chr7_2:87608272-87608291 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + chr7_2:87608273-87608292 None:intergenic 10.0%
!!! TTTTTAAAAGATTAAACAAA+AGG + chr7_2:87608050-87608069 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + chr7_2:87608272-87608291 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + chr7_2:87608273-87608292 None:intergenic 10.0%
!! AATTCTAAATTAAATAAAGG+GGG + chr7_2:87608270-87608289 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + chr7_2:87608271-87608290 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - chr7_2:87608535-87608554 Msa1086890:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - chr7_2:87608721-87608740 Msa1086890:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - chr7_2:87608722-87608741 Msa1086890:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - chr7_2:87609161-87609180 Msa1086890:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + chr7_2:87609243-87609262 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - chr7_2:87609241-87609260 Msa1086890:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - chr7_2:87609630-87609649 Msa1086890:intron 15.0%
!! AATTCTAAATTAAATAAAGG+GGG + chr7_2:87608270-87608289 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + chr7_2:87608271-87608290 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - chr7_2:87608535-87608554 Msa1086890:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - chr7_2:87608721-87608740 Msa1086890:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - chr7_2:87608722-87608741 Msa1086890:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - chr7_2:87609161-87609180 Msa1086890:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + chr7_2:87609243-87609262 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - chr7_2:87609241-87609260 Msa1086890:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - chr7_2:87609630-87609649 Msa1086890:intron 15.0%
!! AAAAGATTAAACAAAAGGAT+TGG + chr7_2:87608045-87608064 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + chr7_2:87608185-87608204 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + chr7_2:87608373-87608392 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - chr7_2:87608534-87608553 Msa1086890:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + chr7_2:87608678-87608697 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - chr7_2:87608716-87608735 Msa1086890:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - chr7_2:87608759-87608778 Msa1086890:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + chr7_2:87609157-87609176 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + chr7_2:87609240-87609259 None:intergenic 20.0%
!! AAAAGATTAAACAAAAGGAT+TGG + chr7_2:87608045-87608064 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + chr7_2:87608185-87608204 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + chr7_2:87608373-87608392 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - chr7_2:87608534-87608553 Msa1086890:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + chr7_2:87608678-87608697 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - chr7_2:87608716-87608735 Msa1086890:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - chr7_2:87608759-87608778 Msa1086890:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + chr7_2:87609157-87609176 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + chr7_2:87609240-87609259 None:intergenic 20.0%
!! ATGGAAGCTTTAACTATTTA+TGG - chr7_2:87607990-87608009 Msa1086890:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - chr7_2:87607991-87608010 Msa1086890:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - chr7_2:87608084-87608103 Msa1086890:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - chr7_2:87608193-87608212 Msa1086890:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - chr7_2:87608570-87608589 Msa1086890:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + chr7_2:87608621-87608640 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + chr7_2:87608791-87608810 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - chr7_2:87609005-87609024 Msa1086890:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - chr7_2:87609079-87609098 Msa1086890:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - chr7_2:87609204-87609223 Msa1086890:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - chr7_2:87609279-87609298 Msa1086890:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - chr7_2:87609307-87609326 Msa1086890:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + chr7_2:87609363-87609382 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - chr7_2:87609365-87609384 Msa1086890:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - chr7_2:87609488-87609507 Msa1086890:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - chr7_2:87609681-87609700 Msa1086890:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - chr7_2:87609806-87609825 Msa1086890:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - chr7_2:87609807-87609826 Msa1086890:CDS 25.0%
!! ATGGAAGCTTTAACTATTTA+TGG - chr7_2:87607990-87608009 Msa1086890:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - chr7_2:87607991-87608010 Msa1086890:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - chr7_2:87608084-87608103 Msa1086890:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - chr7_2:87608193-87608212 Msa1086890:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - chr7_2:87608570-87608589 Msa1086890:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + chr7_2:87608621-87608640 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + chr7_2:87608791-87608810 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - chr7_2:87609005-87609024 Msa1086890:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - chr7_2:87609079-87609098 Msa1086890:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - chr7_2:87609204-87609223 Msa1086890:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - chr7_2:87609279-87609298 Msa1086890:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - chr7_2:87609307-87609326 Msa1086890:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + chr7_2:87609363-87609382 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - chr7_2:87609365-87609384 Msa1086890:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - chr7_2:87609488-87609507 Msa1086890:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - chr7_2:87609681-87609700 Msa1086890:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - chr7_2:87609806-87609825 Msa1086890:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - chr7_2:87609807-87609826 Msa1086890:CDS 25.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - chr7_2:87607971-87607990 Msa1086890:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + chr7_2:87608196-87608215 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - chr7_2:87608323-87608342 Msa1086890:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - chr7_2:87608339-87608358 Msa1086890:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - chr7_2:87608624-87608643 Msa1086890:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - chr7_2:87608698-87608717 Msa1086890:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - chr7_2:87608927-87608946 Msa1086890:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + chr7_2:87609014-87609033 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - chr7_2:87609012-87609031 Msa1086890:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - chr7_2:87609088-87609107 Msa1086890:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + chr7_2:87609131-87609150 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - chr7_2:87609284-87609303 Msa1086890:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - chr7_2:87609306-87609325 Msa1086890:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - chr7_2:87609322-87609341 Msa1086890:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - chr7_2:87609370-87609389 Msa1086890:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - chr7_2:87609489-87609508 Msa1086890:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + chr7_2:87609602-87609621 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - chr7_2:87609680-87609699 Msa1086890:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - chr7_2:87609727-87609746 Msa1086890:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - chr7_2:87609805-87609824 Msa1086890:CDS 30.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - chr7_2:87607971-87607990 Msa1086890:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + chr7_2:87608196-87608215 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - chr7_2:87608323-87608342 Msa1086890:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - chr7_2:87608339-87608358 Msa1086890:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - chr7_2:87608624-87608643 Msa1086890:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - chr7_2:87608698-87608717 Msa1086890:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - chr7_2:87608927-87608946 Msa1086890:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + chr7_2:87609014-87609033 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - chr7_2:87609012-87609031 Msa1086890:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - chr7_2:87609088-87609107 Msa1086890:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + chr7_2:87609131-87609150 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - chr7_2:87609284-87609303 Msa1086890:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - chr7_2:87609306-87609325 Msa1086890:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - chr7_2:87609322-87609341 Msa1086890:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - chr7_2:87609370-87609389 Msa1086890:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - chr7_2:87609489-87609508 Msa1086890:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + chr7_2:87609602-87609621 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - chr7_2:87609680-87609699 Msa1086890:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - chr7_2:87609727-87609746 Msa1086890:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - chr7_2:87609805-87609824 Msa1086890:CDS 30.0%
GGGTACTTTATTACTTAGTC+TGG - chr7_2:87607962-87607981 Msa1086890:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - chr7_2:87607995-87608014 Msa1086890:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + chr7_2:87608243-87608262 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + chr7_2:87608247-87608266 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - chr7_2:87608338-87608357 Msa1086890:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + chr7_2:87608787-87608806 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + chr7_2:87608834-87608853 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + chr7_2:87608940-87608959 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - chr7_2:87608940-87608959 Msa1086890:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + chr7_2:87608960-87608979 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + chr7_2:87608976-87608995 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + chr7_2:87609128-87609147 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - chr7_2:87609371-87609390 Msa1086890:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - chr7_2:87609705-87609724 Msa1086890:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - chr7_2:87609784-87609803 Msa1086890:CDS 35.0%
GGGTACTTTATTACTTAGTC+TGG - chr7_2:87607962-87607981 Msa1086890:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - chr7_2:87607995-87608014 Msa1086890:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + chr7_2:87608243-87608262 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + chr7_2:87608247-87608266 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - chr7_2:87608338-87608357 Msa1086890:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + chr7_2:87608787-87608806 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + chr7_2:87608834-87608853 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + chr7_2:87608940-87608959 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - chr7_2:87608940-87608959 Msa1086890:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + chr7_2:87608960-87608979 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + chr7_2:87608976-87608995 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + chr7_2:87609128-87609147 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - chr7_2:87609371-87609390 Msa1086890:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - chr7_2:87609705-87609724 Msa1086890:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - chr7_2:87609784-87609803 Msa1086890:CDS 35.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + chr7_2:87607942-87607961 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - chr7_2:87607941-87607960 Msa1086890:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - chr7_2:87607942-87607961 Msa1086890:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + chr7_2:87608104-87608123 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + chr7_2:87608236-87608255 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + chr7_2:87608248-87608267 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + chr7_2:87608586-87608605 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - chr7_2:87608812-87608831 Msa1086890:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + chr7_2:87608891-87608910 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - chr7_2:87608889-87608908 Msa1086890:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - chr7_2:87609122-87609141 Msa1086890:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + chr7_2:87609339-87609358 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + chr7_2:87609548-87609567 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + chr7_2:87609549-87609568 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - chr7_2:87609546-87609565 Msa1086890:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - chr7_2:87609552-87609571 Msa1086890:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - chr7_2:87609704-87609723 Msa1086890:CDS 40.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + chr7_2:87607942-87607961 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - chr7_2:87607941-87607960 Msa1086890:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - chr7_2:87607942-87607961 Msa1086890:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + chr7_2:87608104-87608123 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + chr7_2:87608236-87608255 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + chr7_2:87608248-87608267 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + chr7_2:87608586-87608605 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - chr7_2:87608812-87608831 Msa1086890:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + chr7_2:87608891-87608910 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - chr7_2:87608889-87608908 Msa1086890:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - chr7_2:87609122-87609141 Msa1086890:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + chr7_2:87609339-87609358 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + chr7_2:87609548-87609567 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + chr7_2:87609549-87609568 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - chr7_2:87609546-87609565 Msa1086890:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - chr7_2:87609552-87609571 Msa1086890:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - chr7_2:87609704-87609723 Msa1086890:CDS 40.0%
ACAGAAGCAGCAGAAATCAG+TGG + chr7_2:87607822-87607841 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - chr7_2:87607940-87607959 Msa1086890:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + chr7_2:87608260-87608279 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + chr7_2:87608657-87608676 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - chr7_2:87609557-87609576 Msa1086890:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - chr7_2:87609735-87609754 Msa1086890:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - chr7_2:87609736-87609755 Msa1086890:CDS 45.0%
ACAGAAGCAGCAGAAATCAG+TGG + chr7_2:87607822-87607841 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - chr7_2:87607940-87607959 Msa1086890:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + chr7_2:87608260-87608279 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + chr7_2:87608657-87608676 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - chr7_2:87609557-87609576 Msa1086890:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - chr7_2:87609735-87609754 Msa1086890:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - chr7_2:87609736-87609755 Msa1086890:CDS 45.0%
CTGCTTCTGTTATCGCTGCT+GGG - chr7_2:87607832-87607851 Msa1086890:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - chr7_2:87607836-87607855 Msa1086890:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + chr7_2:87607862-87607881 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - chr7_2:87607870-87607889 Msa1086890:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - chr7_2:87607876-87607895 Msa1086890:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - chr7_2:87607889-87607908 Msa1086890:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - chr7_2:87608635-87608654 Msa1086890:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + chr7_2:87608654-87608673 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + chr7_2:87609521-87609540 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - chr7_2:87609521-87609540 Msa1086890:intron 50.0%
CTGCTTCTGTTATCGCTGCT+GGG - chr7_2:87607832-87607851 Msa1086890:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - chr7_2:87607836-87607855 Msa1086890:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + chr7_2:87607862-87607881 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - chr7_2:87607870-87607889 Msa1086890:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - chr7_2:87607876-87607895 Msa1086890:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - chr7_2:87607889-87607908 Msa1086890:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - chr7_2:87608635-87608654 Msa1086890:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + chr7_2:87608654-87608673 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + chr7_2:87609521-87609540 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - chr7_2:87609521-87609540 Msa1086890:intron 50.0%
GCTGCTTCTGTTATCGCTGC+TGG - chr7_2:87607831-87607850 Msa1086890:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - chr7_2:87607864-87607883 Msa1086890:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + chr7_2:87607885-87607904 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - chr7_2:87607888-87607907 Msa1086890:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - chr7_2:87607904-87607923 Msa1086890:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - chr7_2:87607920-87607939 Msa1086890:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - chr7_2:87609522-87609541 Msa1086890:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + chr7_2:87609542-87609561 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + chr7_2:87609543-87609562 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - chr7_2:87609571-87609590 Msa1086890:intron 55.0%
GCTGCTTCTGTTATCGCTGC+TGG - chr7_2:87607831-87607850 Msa1086890:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - chr7_2:87607864-87607883 Msa1086890:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + chr7_2:87607885-87607904 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - chr7_2:87607888-87607907 Msa1086890:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - chr7_2:87607904-87607923 Msa1086890:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - chr7_2:87607920-87607939 Msa1086890:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - chr7_2:87609522-87609541 Msa1086890:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + chr7_2:87609542-87609561 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + chr7_2:87609543-87609562 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - chr7_2:87609571-87609590 Msa1086890:intron 55.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - chr7_2:87607858-87607877 Msa1086890:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - chr7_2:87607903-87607922 Msa1086890:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - chr7_2:87608644-87608663 Msa1086890:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + chr7_2:87608650-87608669 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - chr7_2:87609510-87609529 Msa1086890:intron 60.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - chr7_2:87607858-87607877 Msa1086890:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - chr7_2:87607903-87607922 Msa1086890:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - chr7_2:87608644-87608663 Msa1086890:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + chr7_2:87608650-87608669 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - chr7_2:87609510-87609529 Msa1086890:intron 60.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - chr7_2:87607843-87607862 Msa1086890:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - chr7_2:87607929-87607948 Msa1086890:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - chr7_2:87608645-87608664 Msa1086890:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - chr7_2:87609533-87609552 Msa1086890:intron 65.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - chr7_2:87607843-87607862 Msa1086890:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - chr7_2:87607929-87607948 Msa1086890:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - chr7_2:87608645-87608664 Msa1086890:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - chr7_2:87609533-87609552 Msa1086890:intron 65.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - chr7_2:87607844-87607863 Msa1086890:CDS 70.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - chr7_2:87607844-87607863 Msa1086890:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87607813 87609852 87607813 ID=Msa1086890;Name=Msa1086890
chr7_2 mRNA 87607813 87609852 87607813 ID=Msa1086890-mRNA-1;Parent=Msa1086890;Name=Msa1086890-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|167
chr7_2 exon 87609702 87609852 87609702 ID=Msa1086890-mRNA-1:exon:23932;Parent=Msa1086890-mRNA-1
chr7_2 exon 87607813 87608165 87607813 ID=Msa1086890-mRNA-1:exon:23931;Parent=Msa1086890-mRNA-1
chr7_2 CDS 87609702 87609852 87609702 ID=Msa1086890-mRNA-1:cds;Parent=Msa1086890-mRNA-1
chr7_2 CDS 87607813 87608165 87607813 ID=Msa1086890-mRNA-1:cds;Parent=Msa1086890-mRNA-1
Gene Sequence

>Msa1086890

ATGGATCCACTGATTTCTGCTGCTTCTGTTATCGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCAGGGCAAGCTGTAGAAGGGATTGCGCGACAACCGGAAGCAGAGGACAAAATAAGGGAAGAACTACGGGAAGCAGCCGTTGAACAGCTGGAGAAAGCCCGGGCCCGCTTAAGGAAAGTAGAAACGGAAGCGGATCGGTTTCGAGTGAATGGTTATTCCGAGATAGAACGAGAAAAATTGAATTTAATTAATTCAATTTATACAACTTTGGAACAATTCGAAAATTACAAAAATGAAACGATTCATTTTGAACAACAAAGGGCGATTAATCAAGTGCAACAGAGGGTTTTACAACAAGCATTACAAGGAGCTCTGGGAACTCTGAATAGTTGCTTAAACAACGAGTTACATTTACGTACGATCGGTGCTAATATTGATATGTTTGGGGCGATGAAAGAAAAAAAGAACTGA

Protein sequence

>Msa1086890

MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIREELREAAVEQLEKARARLRKVETEADRFRVNGYSEIEREKLNLINSIYTTLEQFENYKNETIHFEQQRAINQVQQRVLQQALQGALGTLNSCLNNELHLRTIGANIDMFGAMKEKKN*