AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086470 MtrunA17_Chr4g0015651 79.718 355 3 4 1 286 77 431 0.0 529
Msa1086470 MtrunA17_Chr4g0016741 79.718 355 3 4 1 286 77 431 0.0 529
Msa1086470 MtrunA17_CPg0492941 79.718 355 3 4 1 286 77 431 0.0 529
Msa1086470 MtrunA17_MTg0490471 56.044 364 82 5 1 286 78 441 4.82e-122 358
Msa1086470 MtrunA17_Chr2g0278821 84.656 189 15 2 112 286 24 212 1.69e-107 314
Msa1086470 MtrunA17_Chr2g0286451 65.574 183 8 2 3 130 7 189 4.21e-70 215
Msa1086470 MtrunA17_Chr4g0061471 73.333 75 8 1 24 86 1 75 1.82e-28 104
Msa1086470 MtrunA17_Chr4g0040631 95.745 47 2 0 1 47 77 123 3.09e-22 90.1
Msa1086470 MtrunA17_Chr1g0211291 28.283 297 140 7 11 234 84 380 4.17e-21 92.8
Msa1086470 MtrunA17_Chr7g0250051 28.041 296 141 7 11 234 83 378 1.42e-20 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086470 ATCG00120.1 77.465 355 11 4 1 286 77 431 0.0 517
Msa1086470 ATMG01190.1 53.846 364 90 5 1 286 78 441 1.44e-116 345
Msa1086470 AT2G07698.1 54.121 364 89 5 1 286 348 711 1.51e-114 347
Msa1086470 AT4G38510.1 28.378 296 140 7 11 234 83 378 1.12e-21 94.7
Msa1086470 AT4G38510.3 28.378 296 140 7 11 234 83 378 1.12e-21 94.7
Msa1086470 AT4G38510.4 28.378 296 140 7 11 234 83 378 1.12e-21 94.7
Msa1086470 AT4G38510.2 28.378 296 140 7 11 234 83 378 1.12e-21 94.7
Msa1086470 AT4G38510.5 28.378 296 140 7 11 234 90 385 1.15e-21 94.7
Msa1086470 AT1G76030.1 28.378 296 140 7 11 234 82 377 9.54e-21 92.0
Msa1086470 AT1G20260.1 36.000 125 79 1 111 234 254 378 2.17e-15 76.3

Find 69 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGTAAGTGAGGGTTATT+TGG 0.166311 7_2:+87410756 Msa1086470:CDS
CCCAAATAACCCTCACTTAC+TGG 0.241036 7_2:-87410757 None:intergenic
TTATTTACATTCTCGTCTTT+TGG 0.245014 7_2:+87411338 Msa1086470:CDS
GGCCAGCGAGAATTAATTAT+TGG 0.267680 7_2:+87410949 Msa1086470:CDS
GGTAGCTGGTAAATTAAAAT+TGG 0.278592 7_2:+87411596 Msa1086470:intron
TCTCGCTGGCCACGCCCTAT+AGG 0.298734 7_2:-87410937 None:intergenic
CTCGCTGGCCACGCCCTATA+GGG 0.318797 7_2:-87410936 None:intergenic
ATTGATTCTATGATCCCTAT+AGG 0.359827 7_2:+87410922 Msa1086470:CDS
GCGATAAGCCTGTGCTTGTT+TGG 0.364708 7_2:-87411256 None:intergenic
GCCAGCGAGAATTAATTATT+GGG 0.365780 7_2:+87410950 Msa1086470:CDS
CCTGATTGGGTCTCAACTAT+TGG 0.368964 7_2:-87411414 None:intergenic
TGGTAAATTAAAATTGGAAT+TGG 0.382867 7_2:+87411602 Msa1086470:CDS
CACAGTGAGAGGAGCTGATT+GGG 0.383779 7_2:-87411733 None:intergenic
ATTTCTCCTCGACCATCAAT+AGG 0.391542 7_2:-87410805 None:intergenic
TCCTTATACAGGTGCAGCTC+TGG 0.392160 7_2:+87411179 Msa1086470:intron
GCCCTAGCTAAACCTATTGA+TGG 0.393369 7_2:+87410793 Msa1086470:CDS
CCAATAGTTGAGACCCAATC+AGG 0.395916 7_2:+87411414 Msa1086470:CDS
AGATACAATTCTCAATCAAC+AGG 0.401486 7_2:+87411005 Msa1086470:CDS
CCGGGATACGCTTCGCGACC+TGG 0.409309 7_2:-87411306 None:intergenic
AAGCTGAAACATCTCCTGAT+TGG 0.409535 7_2:-87411428 None:intergenic
GCTAAATTAAGTTCTCAGTT+AGG 0.415873 7_2:+87411369 Msa1086470:CDS
CCAGTAAGTGAGGGTTATTT+GGG 0.424091 7_2:+87410757 Msa1086470:CDS
ATTATTGGGGACAGACAAAC+AGG 0.427629 7_2:+87410964 Msa1086470:CDS
AAATATTTGGCCATCTGTAA+TGG 0.434228 7_2:-87411472 None:intergenic
TTGATTCTATGATCCCTATA+GGG 0.437674 7_2:+87410923 Msa1086470:CDS
CCACAGTGAGAGGAGCTGAT+TGG 0.438205 7_2:-87411734 None:intergenic
GTAATGGAAATTACATTAGT+AGG 0.444650 7_2:-87411456 None:intergenic
ATATGTGTTTATGTAGCTAT+TGG 0.445393 7_2:+87411039 Msa1086470:CDS
TAAAGCTACGCAAAATCAAT+TGG 0.449089 7_2:+87411674 Msa1086470:CDS
TTCGTAATAGAAGAGACATT+TGG 0.452176 7_2:-87411278 None:intergenic
AGCTGAAACATCTCCTGATT+GGG 0.452206 7_2:-87411427 None:intergenic
GGAAGTTCGGTAAAAGCAAC+AGG 0.457398 7_2:+87410718 Msa1086470:CDS
ATAAGCCTGTGCTTGTTTGG+AGG 0.462375 7_2:-87411253 None:intergenic
CGTGTATGAGCCTCTTCAAA+CGG 0.465005 7_2:+87410888 Msa1086470:CDS
TCGAGGAGAAATTTCAGCTT+CGG 0.476522 7_2:+87410816 Msa1086470:CDS
CCAGGTCGCGAAGCGTATCC+CGG 0.478786 7_2:+87411306 Msa1086470:CDS
TAACTGAGAACTTAATTTAG+CGG 0.485288 7_2:-87411367 None:intergenic
CGCCGATCCAACTCTGGAAA+CGG 0.485937 7_2:-87411550 None:intergenic
AAATTTCAGCTTCGGAATCT+CGG 0.492871 7_2:+87410824 Msa1086470:CDS
GGTGTTGTATTAATGGGTGA+TGG 0.501676 7_2:+87410679 None:intergenic
TCTGCCGATCTATTCAATGC+TGG 0.509351 7_2:+87411498 Msa1086470:CDS
GCTGATACAAGAGGGAAGTT+CGG 0.510716 7_2:+87410705 Msa1086470:CDS
GTGTATGAGCCTCTTCAAAC+GGG 0.511475 7_2:+87410889 Msa1086470:CDS
TGATTAAAGTGTGACGTTCA+CGG 0.516487 7_2:-87411218 None:intergenic
TAAGCCTGTGCTTGTTTGGA+GGG 0.526272 7_2:-87411252 None:intergenic
GAAATACCCACATTAATAGC+TGG 0.538501 7_2:-87411528 None:intergenic
CCCCAATAATTAATTCTCGC+TGG 0.539649 7_2:-87410951 None:intergenic
GACCATCAATAGGTTTAGCT+AGG 0.542268 7_2:-87410795 None:intergenic
ATCTGTTCTTCCACAGTGAG+AGG 0.551959 7_2:-87411744 None:intergenic
AATGTAATTTCCATTACAGA+TGG 0.557336 7_2:+87411462 Msa1086470:CDS
AAAGCCATGAAACAGGTAGC+TGG 0.558354 7_2:+87411582 Msa1086470:intron
CGATCCCTCCAAACAAGCAC+AGG 0.574680 7_2:+87411248 Msa1086470:CDS
TGCTCAGATACCAGTAAGTG+AGG 0.577261 7_2:+87410747 Msa1086470:CDS
GCAATAAGTCCCGTTTGAAG+AGG 0.589598 7_2:-87410898 None:intergenic
CTTCTATTACGAAGACCACC+AGG 0.597315 7_2:+87411288 Msa1086470:CDS
ACCATCAATAGGTTTAGCTA+GGG 0.601516 7_2:-87410794 None:intergenic
ATCAGACCAGCTATTAATGT+GGG 0.604091 7_2:+87411522 Msa1086470:CDS
GCTAAACCTATTGATGGTCG+AGG 0.620970 7_2:+87410799 Msa1086470:CDS
AATCAGACCAGCTATTAATG+TGG 0.625394 7_2:+87411521 Msa1086470:CDS
GATTCCAGCATTGAATAGAT+CGG 0.626418 7_2:-87411502 None:intergenic
TCTATGATCCCTATAGGGCG+TGG 0.628110 7_2:+87410928 Msa1086470:CDS
CCAGCGAGAATTAATTATTG+GGG 0.636830 7_2:+87410951 Msa1086470:CDS
ACGCAAAATCAATTGGCAAG+AGG 0.645378 7_2:+87411681 Msa1086470:CDS
CGTTTGAAGAGGCTCATACA+CGG 0.655862 7_2:-87410887 None:intergenic
GATGGTTTGCTGATACAAGA+GGG 0.671964 7_2:+87410697 Msa1086470:CDS
GCTCAGATACCAGTAAGTGA+GGG 0.673181 7_2:+87410748 Msa1086470:CDS
TGATGGTTTGCTGATACAAG+AGG 0.676056 7_2:+87410696 Msa1086470:CDS
GGATACGCTTCGCGACCTGG+TGG 0.699302 7_2:-87411303 None:intergenic
GATACAATTCTCAATCAACA+GGG 0.744742 7_2:+87411006 Msa1086470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATTATGAATATAATAA+AGG - chr7_2:87412023-87412042 None:intergenic 10.0%
!! ACTAATTATGAATATAATAA+AGG - chr7_2:87412023-87412042 None:intergenic 10.0%
!! ATGTAAATAAAAAACATCTC+CGG - chr7_2:87411328-87411347 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + chr7_2:87411602-87411621 Msa1086470:CDS 20.0%
!! CAGATAATAACTATTTATAC+TGG + chr7_2:87411762-87411781 Msa1086470:intron 20.0%
!! GATATGATTTCGTTAAATTT+AGG - chr7_2:87411873-87411892 None:intergenic 20.0%
!! ATGTAAATAAAAAACATCTC+CGG - chr7_2:87411328-87411347 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + chr7_2:87411602-87411621 Msa1086470:CDS 20.0%
!! CAGATAATAACTATTTATAC+TGG + chr7_2:87411762-87411781 Msa1086470:intron 20.0%
!! GATATGATTTCGTTAAATTT+AGG - chr7_2:87411873-87411892 None:intergenic 20.0%
! ATATGTGTTTATGTAGCTAT+TGG + chr7_2:87411039-87411058 Msa1086470:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG + chr7_2:87411091-87411110 Msa1086470:intron 25.0%
! TGTAAATAAAAAACATCTCC+GGG - chr7_2:87411327-87411346 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + chr7_2:87411338-87411357 Msa1086470:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - chr7_2:87411370-87411389 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG - chr7_2:87411459-87411478 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG + chr7_2:87411462-87411481 Msa1086470:CDS 25.0%
! TGATTCATTAGAAATTGATC+AGG + chr7_2:87411800-87411819 Msa1086470:intron 25.0%
! TAAATTTCTCGTTGAGTTAA+GGG + chr7_2:87411827-87411846 Msa1086470:intron 25.0%
! ATATGTGTTTATGTAGCTAT+TGG + chr7_2:87411039-87411058 Msa1086470:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG + chr7_2:87411091-87411110 Msa1086470:intron 25.0%
! TGTAAATAAAAAACATCTCC+GGG - chr7_2:87411327-87411346 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + chr7_2:87411338-87411357 Msa1086470:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - chr7_2:87411370-87411389 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG - chr7_2:87411459-87411478 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG + chr7_2:87411462-87411481 Msa1086470:CDS 25.0%
! TGATTCATTAGAAATTGATC+AGG + chr7_2:87411800-87411819 Msa1086470:intron 25.0%
! TAAATTTCTCGTTGAGTTAA+GGG + chr7_2:87411827-87411846 Msa1086470:intron 25.0%
! ATTGATTCTATGATCCCTAT+AGG + chr7_2:87410922-87410941 Msa1086470:CDS 30.0%
TTGATTCTATGATCCCTATA+GGG + chr7_2:87410923-87410942 Msa1086470:CDS 30.0%
AGATACAATTCTCAATCAAC+AGG + chr7_2:87411005-87411024 Msa1086470:CDS 30.0%
GATACAATTCTCAATCAACA+GGG + chr7_2:87411006-87411025 Msa1086470:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG + chr7_2:87411090-87411109 Msa1086470:intron 30.0%
AACTACTTTACAAGAAAGAG+GGG + chr7_2:87411092-87411111 Msa1086470:intron 30.0%
AATGGAGTACACTATTATAG+TGG + chr7_2:87411116-87411135 Msa1086470:intron 30.0%
TTCGTAATAGAAGAGACATT+TGG - chr7_2:87411281-87411300 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + chr7_2:87411369-87411388 Msa1086470:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG - chr7_2:87411475-87411494 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG - chr7_2:87411488-87411507 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + chr7_2:87411575-87411594 Msa1086470:intron 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + chr7_2:87411596-87411615 Msa1086470:intron 30.0%
TAAAGCTACGCAAAATCAAT+TGG + chr7_2:87411674-87411693 Msa1086470:CDS 30.0%
ACTATTTATACTGGAACGAA+TGG + chr7_2:87411771-87411790 Msa1086470:intron 30.0%
GTAAATTTCTCGTTGAGTTA+AGG + chr7_2:87411826-87411845 Msa1086470:intron 30.0%
! ATTGATTCTATGATCCCTAT+AGG + chr7_2:87410922-87410941 Msa1086470:CDS 30.0%
TTGATTCTATGATCCCTATA+GGG + chr7_2:87410923-87410942 Msa1086470:CDS 30.0%
AGATACAATTCTCAATCAAC+AGG + chr7_2:87411005-87411024 Msa1086470:CDS 30.0%
GATACAATTCTCAATCAACA+GGG + chr7_2:87411006-87411025 Msa1086470:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG + chr7_2:87411090-87411109 Msa1086470:intron 30.0%
AACTACTTTACAAGAAAGAG+GGG + chr7_2:87411092-87411111 Msa1086470:intron 30.0%
AATGGAGTACACTATTATAG+TGG + chr7_2:87411116-87411135 Msa1086470:intron 30.0%
TTCGTAATAGAAGAGACATT+TGG - chr7_2:87411281-87411300 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + chr7_2:87411369-87411388 Msa1086470:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG - chr7_2:87411475-87411494 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG - chr7_2:87411488-87411507 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + chr7_2:87411575-87411594 Msa1086470:intron 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + chr7_2:87411596-87411615 Msa1086470:intron 30.0%
TAAAGCTACGCAAAATCAAT+TGG + chr7_2:87411674-87411693 Msa1086470:CDS 30.0%
ACTATTTATACTGGAACGAA+TGG + chr7_2:87411771-87411790 Msa1086470:intron 30.0%
GTAAATTTCTCGTTGAGTTA+AGG + chr7_2:87411826-87411845 Msa1086470:intron 30.0%
ACCATCAATAGGTTTAGCTA+GGG - chr7_2:87410797-87410816 None:intergenic 35.0%
AAATTTCAGCTTCGGAATCT+CGG + chr7_2:87410824-87410843 Msa1086470:CDS 35.0%
GCCAGCGAGAATTAATTATT+GGG + chr7_2:87410950-87410969 Msa1086470:CDS 35.0%
CCAGCGAGAATTAATTATTG+GGG + chr7_2:87410951-87410970 Msa1086470:CDS 35.0%
TGATTAAAGTGTGACGTTCA+CGG - chr7_2:87411221-87411240 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + chr7_2:87411375-87411394 Msa1086470:intron 35.0%
! GATTCCAGCATTGAATAGAT+CGG - chr7_2:87411505-87411524 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG + chr7_2:87411521-87411540 Msa1086470:CDS 35.0%
ATCAGACCAGCTATTAATGT+GGG + chr7_2:87411522-87411541 Msa1086470:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - chr7_2:87411531-87411550 None:intergenic 35.0%
CTGAATAGCTTCCTTCAAAA+GGG - chr7_2:87411928-87411947 None:intergenic 35.0%
! GATGGAACTCTTTTTACTTC+AGG + chr7_2:87411953-87411972 Msa1086470:intron 35.0%
ACCATCAATAGGTTTAGCTA+GGG - chr7_2:87410797-87410816 None:intergenic 35.0%
AAATTTCAGCTTCGGAATCT+CGG + chr7_2:87410824-87410843 Msa1086470:CDS 35.0%
GCCAGCGAGAATTAATTATT+GGG + chr7_2:87410950-87410969 Msa1086470:CDS 35.0%
CCAGCGAGAATTAATTATTG+GGG + chr7_2:87410951-87410970 Msa1086470:CDS 35.0%
TGATTAAAGTGTGACGTTCA+CGG - chr7_2:87411221-87411240 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + chr7_2:87411375-87411394 Msa1086470:intron 35.0%
! GATTCCAGCATTGAATAGAT+CGG - chr7_2:87411505-87411524 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG + chr7_2:87411521-87411540 Msa1086470:CDS 35.0%
ATCAGACCAGCTATTAATGT+GGG + chr7_2:87411522-87411541 Msa1086470:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - chr7_2:87411531-87411550 None:intergenic 35.0%
CTGAATAGCTTCCTTCAAAA+GGG - chr7_2:87411928-87411947 None:intergenic 35.0%
! GATGGAACTCTTTTTACTTC+AGG + chr7_2:87411953-87411972 Msa1086470:intron 35.0%
!! TGATGGTTTGCTGATACAAG+AGG + chr7_2:87410696-87410715 Msa1086470:CDS 40.0%
!! GATGGTTTGCTGATACAAGA+GGG + chr7_2:87410697-87410716 Msa1086470:CDS 40.0%
ACCAGTAAGTGAGGGTTATT+TGG + chr7_2:87410756-87410775 Msa1086470:CDS 40.0%
CCAGTAAGTGAGGGTTATTT+GGG + chr7_2:87410757-87410776 Msa1086470:CDS 40.0%
GACCATCAATAGGTTTAGCT+AGG - chr7_2:87410798-87410817 None:intergenic 40.0%
ATTTCTCCTCGACCATCAAT+AGG - chr7_2:87410808-87410827 None:intergenic 40.0%
TCGAGGAGAAATTTCAGCTT+CGG + chr7_2:87410816-87410835 Msa1086470:CDS 40.0%
GAACGTCTGGAAATAATACC+GGG - chr7_2:87410868-87410887 None:intergenic 40.0%
GGAACGTCTGGAAATAATAC+CGG - chr7_2:87410869-87410888 None:intergenic 40.0%
GGCCAGCGAGAATTAATTAT+TGG + chr7_2:87410949-87410968 Msa1086470:CDS 40.0%
CCCCAATAATTAATTCTCGC+TGG - chr7_2:87410954-87410973 None:intergenic 40.0%
ATTATTGGGGACAGACAAAC+AGG + chr7_2:87410964-87410983 Msa1086470:CDS 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG + chr7_2:87411059-87411078 Msa1086470:intron 40.0%
TTTACAAGAAAGAGGGGCAA+TGG + chr7_2:87411098-87411117 Msa1086470:intron 40.0%
AGCTGAAACATCTCCTGATT+GGG - chr7_2:87411430-87411449 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG - chr7_2:87411431-87411450 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG - chr7_2:87411589-87411608 None:intergenic 40.0%
ACGCAAAATCAATTGGCAAG+AGG + chr7_2:87411681-87411700 Msa1086470:CDS 40.0%
TCTTCTACCAAGACATTCAC+TGG + chr7_2:87411891-87411910 Msa1086470:intron 40.0%
CTTCTACCAAGACATTCACT+GGG + chr7_2:87411892-87411911 Msa1086470:intron 40.0%
TTCTACCAAGACATTCACTG+GGG + chr7_2:87411893-87411912 Msa1086470:intron 40.0%
CCTGAATAGCTTCCTTCAAA+AGG - chr7_2:87411929-87411948 None:intergenic 40.0%
!! CCTTTTGAAGGAAGCTATTC+AGG + chr7_2:87411926-87411945 Msa1086470:intron 40.0%
!! TGATGGTTTGCTGATACAAG+AGG + chr7_2:87410696-87410715 Msa1086470:CDS 40.0%
!! GATGGTTTGCTGATACAAGA+GGG + chr7_2:87410697-87410716 Msa1086470:CDS 40.0%
ACCAGTAAGTGAGGGTTATT+TGG + chr7_2:87410756-87410775 Msa1086470:CDS 40.0%
CCAGTAAGTGAGGGTTATTT+GGG + chr7_2:87410757-87410776 Msa1086470:CDS 40.0%
GACCATCAATAGGTTTAGCT+AGG - chr7_2:87410798-87410817 None:intergenic 40.0%
ATTTCTCCTCGACCATCAAT+AGG - chr7_2:87410808-87410827 None:intergenic 40.0%
TCGAGGAGAAATTTCAGCTT+CGG + chr7_2:87410816-87410835 Msa1086470:CDS 40.0%
GAACGTCTGGAAATAATACC+GGG - chr7_2:87410868-87410887 None:intergenic 40.0%
GGAACGTCTGGAAATAATAC+CGG - chr7_2:87410869-87410888 None:intergenic 40.0%
GGCCAGCGAGAATTAATTAT+TGG + chr7_2:87410949-87410968 Msa1086470:CDS 40.0%
CCCCAATAATTAATTCTCGC+TGG - chr7_2:87410954-87410973 None:intergenic 40.0%
ATTATTGGGGACAGACAAAC+AGG + chr7_2:87410964-87410983 Msa1086470:CDS 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG + chr7_2:87411059-87411078 Msa1086470:intron 40.0%
TTTACAAGAAAGAGGGGCAA+TGG + chr7_2:87411098-87411117 Msa1086470:intron 40.0%
AGCTGAAACATCTCCTGATT+GGG - chr7_2:87411430-87411449 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG - chr7_2:87411431-87411450 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG - chr7_2:87411589-87411608 None:intergenic 40.0%
ACGCAAAATCAATTGGCAAG+AGG + chr7_2:87411681-87411700 Msa1086470:CDS 40.0%
TCTTCTACCAAGACATTCAC+TGG + chr7_2:87411891-87411910 Msa1086470:intron 40.0%
CTTCTACCAAGACATTCACT+GGG + chr7_2:87411892-87411911 Msa1086470:intron 40.0%
TTCTACCAAGACATTCACTG+GGG + chr7_2:87411893-87411912 Msa1086470:intron 40.0%
CCTGAATAGCTTCCTTCAAA+AGG - chr7_2:87411929-87411948 None:intergenic 40.0%
!! CCTTTTGAAGGAAGCTATTC+AGG + chr7_2:87411926-87411945 Msa1086470:intron 40.0%
GCTGATACAAGAGGGAAGTT+CGG + chr7_2:87410705-87410724 Msa1086470:CDS 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG + chr7_2:87410718-87410737 Msa1086470:CDS 45.0%
TGCTCAGATACCAGTAAGTG+AGG + chr7_2:87410747-87410766 Msa1086470:CDS 45.0%
GCTCAGATACCAGTAAGTGA+GGG + chr7_2:87410748-87410767 Msa1086470:CDS 45.0%
CCCAAATAACCCTCACTTAC+TGG - chr7_2:87410760-87410779 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG + chr7_2:87410793-87410812 Msa1086470:CDS 45.0%
! GCTAAACCTATTGATGGTCG+AGG + chr7_2:87410799-87410818 Msa1086470:CDS 45.0%
TCTGGAAATAATACCGGGAG+CGG - chr7_2:87410863-87410882 None:intergenic 45.0%
CGTTTGAAGAGGCTCATACA+CGG - chr7_2:87410890-87410909 None:intergenic 45.0%
CGTGTATGAGCCTCTTCAAA+CGG + chr7_2:87410888-87410907 Msa1086470:CDS 45.0%
GTGTATGAGCCTCTTCAAAC+GGG + chr7_2:87410889-87410908 Msa1086470:CDS 45.0%
GCAATAAGTCCCGTTTGAAG+AGG - chr7_2:87410901-87410920 None:intergenic 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG - chr7_2:87411159-87411178 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG + chr7_2:87411168-87411187 Msa1086470:intron 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - chr7_2:87411255-87411274 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - chr7_2:87411256-87411275 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + chr7_2:87411288-87411307 Msa1086470:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG - chr7_2:87411417-87411436 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG + chr7_2:87411414-87411433 Msa1086470:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG + chr7_2:87411498-87411517 Msa1086470:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + chr7_2:87411543-87411562 Msa1086470:intron 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + chr7_2:87411548-87411567 Msa1086470:intron 45.0%
AAAGCCATGAAACAGGTAGC+TGG + chr7_2:87411582-87411601 Msa1086470:intron 45.0%
ATCTGTTCTTCCACAGTGAG+AGG - chr7_2:87411747-87411766 None:intergenic 45.0%
GGAAGCTATTCAGGAACAGA+TGG + chr7_2:87411935-87411954 Msa1086470:intron 45.0%
GCTGATACAAGAGGGAAGTT+CGG + chr7_2:87410705-87410724 Msa1086470:CDS 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG + chr7_2:87410718-87410737 Msa1086470:CDS 45.0%
TGCTCAGATACCAGTAAGTG+AGG + chr7_2:87410747-87410766 Msa1086470:CDS 45.0%
GCTCAGATACCAGTAAGTGA+GGG + chr7_2:87410748-87410767 Msa1086470:CDS 45.0%
CCCAAATAACCCTCACTTAC+TGG - chr7_2:87410760-87410779 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG + chr7_2:87410793-87410812 Msa1086470:CDS 45.0%
! GCTAAACCTATTGATGGTCG+AGG + chr7_2:87410799-87410818 Msa1086470:CDS 45.0%
TCTGGAAATAATACCGGGAG+CGG - chr7_2:87410863-87410882 None:intergenic 45.0%
CGTTTGAAGAGGCTCATACA+CGG - chr7_2:87410890-87410909 None:intergenic 45.0%
CGTGTATGAGCCTCTTCAAA+CGG + chr7_2:87410888-87410907 Msa1086470:CDS 45.0%
GTGTATGAGCCTCTTCAAAC+GGG + chr7_2:87410889-87410908 Msa1086470:CDS 45.0%
GCAATAAGTCCCGTTTGAAG+AGG - chr7_2:87410901-87410920 None:intergenic 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG - chr7_2:87411159-87411178 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG + chr7_2:87411168-87411187 Msa1086470:intron 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - chr7_2:87411255-87411274 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - chr7_2:87411256-87411275 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + chr7_2:87411288-87411307 Msa1086470:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG - chr7_2:87411417-87411436 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG + chr7_2:87411414-87411433 Msa1086470:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG + chr7_2:87411498-87411517 Msa1086470:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + chr7_2:87411543-87411562 Msa1086470:intron 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + chr7_2:87411548-87411567 Msa1086470:intron 45.0%
AAAGCCATGAAACAGGTAGC+TGG + chr7_2:87411582-87411601 Msa1086470:intron 45.0%
ATCTGTTCTTCCACAGTGAG+AGG - chr7_2:87411747-87411766 None:intergenic 45.0%
GGAAGCTATTCAGGAACAGA+TGG + chr7_2:87411935-87411954 Msa1086470:intron 45.0%
TTAATCGAATCTCCCGCTCC+CGG + chr7_2:87410847-87410866 Msa1086470:intron 50.0%
CTGGAAATAATACCGGGAGC+GGG - chr7_2:87410862-87410881 None:intergenic 50.0%
TCTATGATCCCTATAGGGCG+TGG + chr7_2:87410928-87410947 Msa1086470:CDS 50.0%
AGCATCTTCTGTGGCTCAAG+TGG + chr7_2:87411068-87411087 Msa1086470:intron 50.0%
TCCTTATACAGGTGCAGCTC+TGG + chr7_2:87411179-87411198 Msa1086470:intron 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - chr7_2:87411259-87411278 None:intergenic 50.0%
CACAGTGAGAGGAGCTGATT+GGG - chr7_2:87411736-87411755 None:intergenic 50.0%
TGCTTCCCCAGTGAATGTCT+TGG - chr7_2:87411901-87411920 None:intergenic 50.0%
! GGAAGCAGAAGCCCTTTTGA+AGG + chr7_2:87411914-87411933 Msa1086470:intron 50.0%
TTAATCGAATCTCCCGCTCC+CGG + chr7_2:87410847-87410866 Msa1086470:intron 50.0%
CTGGAAATAATACCGGGAGC+GGG - chr7_2:87410862-87410881 None:intergenic 50.0%
TCTATGATCCCTATAGGGCG+TGG + chr7_2:87410928-87410947 Msa1086470:CDS 50.0%
AGCATCTTCTGTGGCTCAAG+TGG + chr7_2:87411068-87411087 Msa1086470:intron 50.0%
TCCTTATACAGGTGCAGCTC+TGG + chr7_2:87411179-87411198 Msa1086470:intron 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - chr7_2:87411259-87411278 None:intergenic 50.0%
CACAGTGAGAGGAGCTGATT+GGG - chr7_2:87411736-87411755 None:intergenic 50.0%
TGCTTCCCCAGTGAATGTCT+TGG - chr7_2:87411901-87411920 None:intergenic 50.0%
! GGAAGCAGAAGCCCTTTTGA+AGG + chr7_2:87411914-87411933 Msa1086470:intron 50.0%
AGGCTCATACACGGAACGTC+TGG - chr7_2:87410881-87410900 None:intergenic 55.0%
CTGCACCTGTATAAGGAGCG+AGG - chr7_2:87411176-87411195 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG - chr7_2:87411183-87411202 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG + chr7_2:87411248-87411267 Msa1086470:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - chr7_2:87411553-87411572 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + chr7_2:87411551-87411570 Msa1086470:intron 55.0%
CCACAGTGAGAGGAGCTGAT+TGG - chr7_2:87411737-87411756 None:intergenic 55.0%
CCAATCAGCTCCTCTCACTG+TGG + chr7_2:87411734-87411753 Msa1086470:intron 55.0%
AGGCTCATACACGGAACGTC+TGG - chr7_2:87410881-87410900 None:intergenic 55.0%
CTGCACCTGTATAAGGAGCG+AGG - chr7_2:87411176-87411195 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG - chr7_2:87411183-87411202 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG + chr7_2:87411248-87411267 Msa1086470:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - chr7_2:87411553-87411572 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + chr7_2:87411551-87411570 Msa1086470:intron 55.0%
CCACAGTGAGAGGAGCTGAT+TGG - chr7_2:87411737-87411756 None:intergenic 55.0%
CCAATCAGCTCCTCTCACTG+TGG + chr7_2:87411734-87411753 Msa1086470:intron 55.0%
TTGAGCCGCCGATCCAACTC+TGG - chr7_2:87411559-87411578 None:intergenic 60.0%
TTGAGCCGCCGATCCAACTC+TGG - chr7_2:87411559-87411578 None:intergenic 60.0%
CTCGCTGGCCACGCCCTATA+GGG - chr7_2:87410939-87410958 None:intergenic 65.0%
TCTCGCTGGCCACGCCCTAT+AGG - chr7_2:87410940-87410959 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG - chr7_2:87411306-87411325 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG + chr7_2:87411306-87411325 Msa1086470:CDS 65.0%
CTCGCTGGCCACGCCCTATA+GGG - chr7_2:87410939-87410958 None:intergenic 65.0%
TCTCGCTGGCCACGCCCTAT+AGG - chr7_2:87410940-87410959 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG - chr7_2:87411306-87411325 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG + chr7_2:87411306-87411325 Msa1086470:CDS 65.0%
CCGGGATACGCTTCGCGACC+TGG - chr7_2:87411309-87411328 None:intergenic 70.0%
CCGGGATACGCTTCGCGACC+TGG - chr7_2:87411309-87411328 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87410691 87412164 87410691 ID=Msa1086470;Name=Msa1086470
chr7_2 mRNA 87410691 87412164 87410691 ID=Msa1086470-mRNA-1;Parent=Msa1086470;Name=Msa1086470-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|0.83|0|0|6|0|288
chr7_2 exon 87410691 87410845 87410691 ID=Msa1086470-mRNA-1:exon:23811;Parent=Msa1086470-mRNA-1
chr7_2 exon 87410882 87411060 87410882 ID=Msa1086470-mRNA-1:exon:23812;Parent=Msa1086470-mRNA-1
chr7_2 exon 87411190 87411390 87411190 ID=Msa1086470-mRNA-1:exon:23813;Parent=Msa1086470-mRNA-1
chr7_2 exon 87411397 87411560 87411397 ID=Msa1086470-mRNA-1:exon:23814;Parent=Msa1086470-mRNA-1
chr7_2 exon 87411597 87411752 87411597 ID=Msa1086470-mRNA-1:exon:23815;Parent=Msa1086470-mRNA-1
chr7_2 exon 87412153 87412164 87412153 ID=Msa1086470-mRNA-1:exon:23816;Parent=Msa1086470-mRNA-1
chr7_2 CDS 87410691 87410845 87410691 ID=Msa1086470-mRNA-1:cds;Parent=Msa1086470-mRNA-1
chr7_2 CDS 87410882 87411060 87410882 ID=Msa1086470-mRNA-1:cds;Parent=Msa1086470-mRNA-1
chr7_2 CDS 87411190 87411390 87411190 ID=Msa1086470-mRNA-1:cds;Parent=Msa1086470-mRNA-1
chr7_2 CDS 87411397 87411560 87411397 ID=Msa1086470-mRNA-1:cds;Parent=Msa1086470-mRNA-1
chr7_2 CDS 87411597 87411752 87411597 ID=Msa1086470-mRNA-1:cds;Parent=Msa1086470-mRNA-1
chr7_2 CDS 87412153 87412164 87412153 ID=Msa1086470-mRNA-1:cds;Parent=Msa1086470-mRNA-1
Gene Sequence

>Msa1086470

ATGGGTGATGGTTTGCTGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTCACTATACGAATATAA

Protein sequence

>Msa1086470

MGDGLLIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTIRI*