AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0268560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268560 MtrunA17_CPg0492961 74.405 168 35 2 1 167 22 182 1.53e-79 233
Msa0268560 MtrunA17_Chr4g0016711 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa0268560 MtrunA17_CPg0492971 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa0268560 MtrunA17_Chr4g0015621 96.226 53 2 0 1 53 1 53 1.69e-28 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268560 ATCG00130.1 82.456 114 20 0 51 164 68 181 2.00e-63 193
Msa0268560 ATCG00140.1 90.566 53 5 0 1 53 1 53 3.90e-26 95.5

Find 45 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAAGCAGAGGACAAAATA+AGG 0.270738 2_2:-70306728 Msa0268560:CDS
GTGCTAATATTGATATGTTT+GGG 0.275522 2_2:-70304862 Msa0268560:CDS
GCCGTCGGGCTTGCTTCTAT+TGG 0.311843 2_2:-70306810 Msa0268560:CDS
GCTGCTTCTGTTATCGCTGC+TGG 0.315135 2_2:-70306837 Msa0268560:CDS
GGTGCTAATATTGATATGTT+TGG 0.316362 2_2:-70304863 Msa0268560:CDS
CTACTTTCCTTAAGCGGGCC+CGG 0.340021 2_2:+70305128 None:intergenic
GCTGCAGGGCAAGCTGTAGA+AGG 0.363265 2_2:-70306765 Msa0268560:CDS
TAATTCAATTTATACAACTT+TGG 0.388293 2_2:-70305038 Msa0268560:CDS
AGAAAGCCCGGGCCCGCTTA+AGG 0.414131 2_2:-70305135 Msa0268560:CDS
GCTTCTATTGGACCTGGAGT+TGG 0.416315 2_2:-70306798 Msa0268560:CDS
TCGCTGCTGGGTTGGCCGTC+GGG 0.427770 2_2:-70306824 Msa0268560:CDS
ATCGCTGCTGGGTTGGCCGT+CGG 0.428270 2_2:-70306825 Msa0268560:CDS
CGTTTCTACTTTCCTTAAGC+GGG 0.444690 2_2:+70305123 None:intergenic
GCGGATCGGTTTCGAGTGAA+TGG 0.446998 2_2:-70305097 Msa0268560:CDS
TTCAAAATTCAGAAGAACTA+CGG 0.449969 2_2:-70305180 Msa0268560:intron
GGAAGCAGCCGTTGAACAGC+TGG 0.450450 2_2:-70305158 Msa0268560:CDS
ACAAGCATTACAAGGAGCTC+TGG 0.452163 2_2:-70304933 Msa0268560:CDS
CTGCTTCTGTTATCGCTGCT+GGG 0.461552 2_2:-70306836 Msa0268560:CDS
TACTTTCCTTAAGCGGGCCC+GGG 0.461743 2_2:+70305129 None:intergenic
TTGAACAGCTGGAGAAAGCC+CGG 0.472109 2_2:-70305147 Msa0268560:CDS
GGAAGCAGAGGACAAAATAA+GGG 0.473459 2_2:-70306727 Msa0268560:CDS
AGAAGGGATTGCGCGACAAC+CGG 0.475077 2_2:-70306748 Msa0268560:CDS
GGGCTTGCTTCTATTGGACC+TGG 0.481695 2_2:-70306804 Msa0268560:CDS
GTTGGTCAAGGTACAGCTGC+AGG 0.497139 2_2:-70306780 Msa0268560:CDS
GGCTTTCTCCAGCTGTTCAA+CGG 0.504402 2_2:+70305150 None:intergenic
TCAAAATTCAGAAGAACTAC+GGG 0.510719 2_2:-70305179 Msa0268560:intron
TTCTGTTATCGCTGCTGGGT+TGG 0.514112 2_2:-70306832 Msa0268560:CDS
CCGTTTCTACTTTCCTTAAG+CGG 0.521089 2_2:+70305122 None:intergenic
ATTGGACCTGGAGTTGGTCA+AGG 0.543278 2_2:-70306792 Msa0268560:CDS
TGCGCGACAACCGGAAGCAG+AGG 0.554171 2_2:-70306739 Msa0268560:CDS
CAAGCATTACAAGGAGCTCT+GGG 0.568354 2_2:-70304932 Msa0268560:CDS
AAGTAGAAACGGAAGCGGAT+CGG 0.570689 2_2:-70305111 Msa0268560:CDS
CCGCTTAAGGAAAGTAGAAA+CGG 0.573518 2_2:-70305122 Msa0268560:CDS
TGAACAGCTGGAGAAAGCCC+GGG 0.575165 2_2:-70305146 Msa0268560:CDS
CTGCAGGGCAAGCTGTAGAA+GGG 0.582070 2_2:-70306764 Msa0268560:CDS
TGCTAATATTGATATGTTTG+GGG 0.586102 2_2:-70304861 Msa0268560:CDS
GCTGTACCTTGACCAACTCC+AGG 0.593501 2_2:+70306786 None:intergenic
CGATTAATCAAGTGCAACAG+AGG 0.596922 2_2:-70304964 Msa0268560:CDS
GAGTTACATTTACGTACGAT+CGG 0.617220 2_2:-70304884 Msa0268560:CDS
AAGGAAAGTAGAAACGGAAG+CGG 0.622485 2_2:-70305116 Msa0268560:CDS
TCCAATAGAAGCAAGCCCGA+CGG 0.638086 2_2:+70306809 None:intergenic
ACAGAAGCAGCAGAAATCAG+TGG 0.640161 2_2:+70306849 None:intergenic
TTGGTCAAGGTACAGCTGCA+GGG 0.643472 2_2:-70306779 Msa0268560:CDS
GATTAATCAAGTGCAACAGA+GGG 0.644246 2_2:-70304963 Msa0268560:CDS
GAAGCAGAGGACAAAATAAG+GGG 0.658398 2_2:-70306726 Msa0268560:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAGATTAAACAAA+AGG + chr2_2:70305075-70305094 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + chr2_2:70305297-70305316 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + chr2_2:70305298-70305317 None:intergenic 10.0%
!!! TTTTTAAAAGATTAAACAAA+AGG + chr2_2:70305075-70305094 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + chr2_2:70305297-70305316 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + chr2_2:70305298-70305317 None:intergenic 10.0%
!! AATTCTAAATTAAATAAAGG+GGG + chr2_2:70305295-70305314 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + chr2_2:70305296-70305315 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - chr2_2:70305560-70305579 Msa0268560:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - chr2_2:70305746-70305765 Msa0268560:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - chr2_2:70305747-70305766 Msa0268560:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - chr2_2:70306186-70306205 Msa0268560:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + chr2_2:70306268-70306287 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - chr2_2:70306266-70306285 Msa0268560:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - chr2_2:70306655-70306674 Msa0268560:intron 15.0%
!! AATTCTAAATTAAATAAAGG+GGG + chr2_2:70305295-70305314 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + chr2_2:70305296-70305315 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - chr2_2:70305560-70305579 Msa0268560:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - chr2_2:70305746-70305765 Msa0268560:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - chr2_2:70305747-70305766 Msa0268560:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - chr2_2:70306186-70306205 Msa0268560:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + chr2_2:70306268-70306287 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - chr2_2:70306266-70306285 Msa0268560:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - chr2_2:70306655-70306674 Msa0268560:intron 15.0%
!! AAAAGATTAAACAAAAGGAT+TGG + chr2_2:70305070-70305089 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + chr2_2:70305210-70305229 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + chr2_2:70305398-70305417 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - chr2_2:70305559-70305578 Msa0268560:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + chr2_2:70305703-70305722 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - chr2_2:70305741-70305760 Msa0268560:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - chr2_2:70305784-70305803 Msa0268560:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + chr2_2:70306182-70306201 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + chr2_2:70306265-70306284 None:intergenic 20.0%
!! AAAAGATTAAACAAAAGGAT+TGG + chr2_2:70305070-70305089 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + chr2_2:70305210-70305229 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + chr2_2:70305398-70305417 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - chr2_2:70305559-70305578 Msa0268560:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + chr2_2:70305703-70305722 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - chr2_2:70305741-70305760 Msa0268560:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - chr2_2:70305784-70305803 Msa0268560:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + chr2_2:70306182-70306201 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + chr2_2:70306265-70306284 None:intergenic 20.0%
!! ATGGAAGCTTTAACTATTTA+TGG - chr2_2:70305015-70305034 Msa0268560:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - chr2_2:70305016-70305035 Msa0268560:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - chr2_2:70305109-70305128 Msa0268560:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - chr2_2:70305218-70305237 Msa0268560:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - chr2_2:70305595-70305614 Msa0268560:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + chr2_2:70305646-70305665 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + chr2_2:70305816-70305835 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - chr2_2:70306030-70306049 Msa0268560:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - chr2_2:70306104-70306123 Msa0268560:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - chr2_2:70306229-70306248 Msa0268560:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - chr2_2:70306304-70306323 Msa0268560:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - chr2_2:70306332-70306351 Msa0268560:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + chr2_2:70306388-70306407 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - chr2_2:70306390-70306409 Msa0268560:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - chr2_2:70306513-70306532 Msa0268560:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - chr2_2:70306706-70306725 Msa0268560:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - chr2_2:70306831-70306850 Msa0268560:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - chr2_2:70306832-70306851 Msa0268560:CDS 25.0%
!! ATGGAAGCTTTAACTATTTA+TGG - chr2_2:70305015-70305034 Msa0268560:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - chr2_2:70305016-70305035 Msa0268560:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - chr2_2:70305109-70305128 Msa0268560:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - chr2_2:70305218-70305237 Msa0268560:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - chr2_2:70305595-70305614 Msa0268560:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + chr2_2:70305646-70305665 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + chr2_2:70305816-70305835 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - chr2_2:70306030-70306049 Msa0268560:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - chr2_2:70306104-70306123 Msa0268560:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - chr2_2:70306229-70306248 Msa0268560:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - chr2_2:70306304-70306323 Msa0268560:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - chr2_2:70306332-70306351 Msa0268560:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + chr2_2:70306388-70306407 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - chr2_2:70306390-70306409 Msa0268560:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - chr2_2:70306513-70306532 Msa0268560:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - chr2_2:70306706-70306725 Msa0268560:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - chr2_2:70306831-70306850 Msa0268560:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - chr2_2:70306832-70306851 Msa0268560:CDS 25.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - chr2_2:70304996-70305015 Msa0268560:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + chr2_2:70305221-70305240 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - chr2_2:70305348-70305367 Msa0268560:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - chr2_2:70305364-70305383 Msa0268560:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - chr2_2:70305649-70305668 Msa0268560:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - chr2_2:70305723-70305742 Msa0268560:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - chr2_2:70305952-70305971 Msa0268560:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + chr2_2:70306039-70306058 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - chr2_2:70306037-70306056 Msa0268560:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - chr2_2:70306113-70306132 Msa0268560:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + chr2_2:70306156-70306175 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - chr2_2:70306309-70306328 Msa0268560:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - chr2_2:70306331-70306350 Msa0268560:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - chr2_2:70306347-70306366 Msa0268560:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - chr2_2:70306395-70306414 Msa0268560:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - chr2_2:70306514-70306533 Msa0268560:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + chr2_2:70306627-70306646 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - chr2_2:70306705-70306724 Msa0268560:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - chr2_2:70306752-70306771 Msa0268560:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - chr2_2:70306830-70306849 Msa0268560:CDS 30.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - chr2_2:70304996-70305015 Msa0268560:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + chr2_2:70305221-70305240 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - chr2_2:70305348-70305367 Msa0268560:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - chr2_2:70305364-70305383 Msa0268560:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - chr2_2:70305649-70305668 Msa0268560:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - chr2_2:70305723-70305742 Msa0268560:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - chr2_2:70305952-70305971 Msa0268560:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + chr2_2:70306039-70306058 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - chr2_2:70306037-70306056 Msa0268560:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - chr2_2:70306113-70306132 Msa0268560:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + chr2_2:70306156-70306175 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - chr2_2:70306309-70306328 Msa0268560:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - chr2_2:70306331-70306350 Msa0268560:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - chr2_2:70306347-70306366 Msa0268560:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - chr2_2:70306395-70306414 Msa0268560:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - chr2_2:70306514-70306533 Msa0268560:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + chr2_2:70306627-70306646 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - chr2_2:70306705-70306724 Msa0268560:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - chr2_2:70306752-70306771 Msa0268560:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - chr2_2:70306830-70306849 Msa0268560:CDS 30.0%
GGGTACTTTATTACTTAGTC+TGG - chr2_2:70304987-70305006 Msa0268560:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - chr2_2:70305020-70305039 Msa0268560:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + chr2_2:70305268-70305287 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + chr2_2:70305272-70305291 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - chr2_2:70305363-70305382 Msa0268560:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + chr2_2:70305812-70305831 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + chr2_2:70305859-70305878 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + chr2_2:70305965-70305984 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - chr2_2:70305965-70305984 Msa0268560:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + chr2_2:70305985-70306004 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + chr2_2:70306001-70306020 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + chr2_2:70306153-70306172 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - chr2_2:70306396-70306415 Msa0268560:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - chr2_2:70306730-70306749 Msa0268560:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - chr2_2:70306809-70306828 Msa0268560:CDS 35.0%
GGGTACTTTATTACTTAGTC+TGG - chr2_2:70304987-70305006 Msa0268560:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - chr2_2:70305020-70305039 Msa0268560:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + chr2_2:70305268-70305287 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + chr2_2:70305272-70305291 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - chr2_2:70305363-70305382 Msa0268560:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + chr2_2:70305812-70305831 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + chr2_2:70305859-70305878 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + chr2_2:70305965-70305984 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - chr2_2:70305965-70305984 Msa0268560:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + chr2_2:70305985-70306004 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + chr2_2:70306001-70306020 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + chr2_2:70306153-70306172 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - chr2_2:70306396-70306415 Msa0268560:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - chr2_2:70306730-70306749 Msa0268560:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - chr2_2:70306809-70306828 Msa0268560:CDS 35.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + chr2_2:70304967-70304986 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - chr2_2:70304966-70304985 Msa0268560:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - chr2_2:70304967-70304986 Msa0268560:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + chr2_2:70305129-70305148 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + chr2_2:70305261-70305280 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + chr2_2:70305273-70305292 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + chr2_2:70305611-70305630 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - chr2_2:70305837-70305856 Msa0268560:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + chr2_2:70305916-70305935 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - chr2_2:70305914-70305933 Msa0268560:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - chr2_2:70306147-70306166 Msa0268560:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + chr2_2:70306364-70306383 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + chr2_2:70306573-70306592 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + chr2_2:70306574-70306593 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - chr2_2:70306571-70306590 Msa0268560:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - chr2_2:70306577-70306596 Msa0268560:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - chr2_2:70306729-70306748 Msa0268560:CDS 40.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + chr2_2:70304967-70304986 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - chr2_2:70304966-70304985 Msa0268560:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - chr2_2:70304967-70304986 Msa0268560:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + chr2_2:70305129-70305148 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + chr2_2:70305261-70305280 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + chr2_2:70305273-70305292 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + chr2_2:70305611-70305630 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - chr2_2:70305837-70305856 Msa0268560:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + chr2_2:70305916-70305935 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - chr2_2:70305914-70305933 Msa0268560:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - chr2_2:70306147-70306166 Msa0268560:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + chr2_2:70306364-70306383 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + chr2_2:70306573-70306592 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + chr2_2:70306574-70306593 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - chr2_2:70306571-70306590 Msa0268560:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - chr2_2:70306577-70306596 Msa0268560:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - chr2_2:70306729-70306748 Msa0268560:CDS 40.0%
ACAGAAGCAGCAGAAATCAG+TGG + chr2_2:70304847-70304866 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - chr2_2:70304965-70304984 Msa0268560:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + chr2_2:70305285-70305304 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + chr2_2:70305682-70305701 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - chr2_2:70306582-70306601 Msa0268560:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - chr2_2:70306760-70306779 Msa0268560:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - chr2_2:70306761-70306780 Msa0268560:CDS 45.0%
ACAGAAGCAGCAGAAATCAG+TGG + chr2_2:70304847-70304866 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - chr2_2:70304965-70304984 Msa0268560:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + chr2_2:70305285-70305304 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + chr2_2:70305682-70305701 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - chr2_2:70306582-70306601 Msa0268560:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - chr2_2:70306760-70306779 Msa0268560:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - chr2_2:70306761-70306780 Msa0268560:CDS 45.0%
CTGCTTCTGTTATCGCTGCT+GGG - chr2_2:70304857-70304876 Msa0268560:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - chr2_2:70304861-70304880 Msa0268560:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + chr2_2:70304887-70304906 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - chr2_2:70304895-70304914 Msa0268560:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - chr2_2:70304901-70304920 Msa0268560:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - chr2_2:70304914-70304933 Msa0268560:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - chr2_2:70305660-70305679 Msa0268560:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + chr2_2:70305679-70305698 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + chr2_2:70306546-70306565 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - chr2_2:70306546-70306565 Msa0268560:intron 50.0%
CTGCTTCTGTTATCGCTGCT+GGG - chr2_2:70304857-70304876 Msa0268560:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - chr2_2:70304861-70304880 Msa0268560:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + chr2_2:70304887-70304906 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - chr2_2:70304895-70304914 Msa0268560:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - chr2_2:70304901-70304920 Msa0268560:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - chr2_2:70304914-70304933 Msa0268560:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - chr2_2:70305660-70305679 Msa0268560:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + chr2_2:70305679-70305698 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + chr2_2:70306546-70306565 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - chr2_2:70306546-70306565 Msa0268560:intron 50.0%
GCTGCTTCTGTTATCGCTGC+TGG - chr2_2:70304856-70304875 Msa0268560:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - chr2_2:70304889-70304908 Msa0268560:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + chr2_2:70304910-70304929 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - chr2_2:70304913-70304932 Msa0268560:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - chr2_2:70304929-70304948 Msa0268560:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - chr2_2:70304945-70304964 Msa0268560:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - chr2_2:70306547-70306566 Msa0268560:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + chr2_2:70306567-70306586 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + chr2_2:70306568-70306587 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - chr2_2:70306596-70306615 Msa0268560:intron 55.0%
GCTGCTTCTGTTATCGCTGC+TGG - chr2_2:70304856-70304875 Msa0268560:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - chr2_2:70304889-70304908 Msa0268560:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + chr2_2:70304910-70304929 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - chr2_2:70304913-70304932 Msa0268560:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - chr2_2:70304929-70304948 Msa0268560:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - chr2_2:70304945-70304964 Msa0268560:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - chr2_2:70306547-70306566 Msa0268560:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + chr2_2:70306567-70306586 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + chr2_2:70306568-70306587 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - chr2_2:70306596-70306615 Msa0268560:intron 55.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - chr2_2:70304883-70304902 Msa0268560:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - chr2_2:70304928-70304947 Msa0268560:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - chr2_2:70305669-70305688 Msa0268560:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + chr2_2:70305675-70305694 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - chr2_2:70306535-70306554 Msa0268560:intron 60.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - chr2_2:70304883-70304902 Msa0268560:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - chr2_2:70304928-70304947 Msa0268560:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - chr2_2:70305669-70305688 Msa0268560:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + chr2_2:70305675-70305694 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - chr2_2:70306535-70306554 Msa0268560:intron 60.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - chr2_2:70304868-70304887 Msa0268560:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - chr2_2:70304954-70304973 Msa0268560:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - chr2_2:70305670-70305689 Msa0268560:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - chr2_2:70306558-70306577 Msa0268560:intron 65.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - chr2_2:70304868-70304887 Msa0268560:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - chr2_2:70304954-70304973 Msa0268560:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - chr2_2:70305670-70305689 Msa0268560:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - chr2_2:70306558-70306577 Msa0268560:intron 65.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - chr2_2:70304869-70304888 Msa0268560:CDS 70.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - chr2_2:70304869-70304888 Msa0268560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 70304838 70306877 70304838 ID=Msa0268560;Name=Msa0268560
chr2_2 mRNA 70304838 70306877 70304838 ID=Msa0268560-mRNA-1;Parent=Msa0268560;Name=Msa0268560-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|167
chr2_2 exon 70306727 70306877 70306727 ID=Msa0268560-mRNA-1:exon:22584;Parent=Msa0268560-mRNA-1
chr2_2 exon 70304838 70305190 70304838 ID=Msa0268560-mRNA-1:exon:22583;Parent=Msa0268560-mRNA-1
chr2_2 CDS 70306727 70306877 70306727 ID=Msa0268560-mRNA-1:cds;Parent=Msa0268560-mRNA-1
chr2_2 CDS 70304838 70305190 70304838 ID=Msa0268560-mRNA-1:cds;Parent=Msa0268560-mRNA-1
Gene Sequence

>Msa0268560

ATGGATCCACTGATTTCTGCTGCTTCTGTTATCGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCAGGGCAAGCTGTAGAAGGGATTGCGCGACAACCGGAAGCAGAGGACAAAATAAGGGAAGAACTACGGGAAGCAGCCGTTGAACAGCTGGAGAAAGCCCGGGCCCGCTTAAGGAAAGTAGAAACGGAAGCGGATCGGTTTCGAGTGAATGGTTATTCCGAGATAGAACGAGAAAAATTGAATTTAATTAATTCAATTTATACAACTTTGGAACAATTCGAAAATTACAAAAATGAAACGATTCATTTTGAACAACAAAGGGCGATTAATCAAGTGCAACAGAGGGTTTTACAACAAGCATTACAAGGAGCTCTGGGAACTCTGAATAGTTGCTTAAACAACGAGTTACATTTACGTACGATCGGTGCTAATATTGATATGTTTGGGGCGATGAAAGAAAAAAAGAACTGA

Protein sequence

>Msa0268560

MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIREELREAAVEQLEKARARLRKVETEADRFRVNGYSEIEREKLNLINSIYTTLEQFENYKNETIHFEQQRAINQVQQRVLQQALQGALGTLNSCLNNELHLRTIGANIDMFGAMKEKKN*