AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086190 MtrunA17_CPg0492961 74.405 168 35 2 1 167 22 182 1.53e-79 233
Msa1086190 MtrunA17_Chr4g0016711 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa1086190 MtrunA17_CPg0492971 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa1086190 MtrunA17_Chr4g0015621 96.226 53 2 0 1 53 1 53 1.69e-28 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086190 ATCG00130.1 82.456 114 20 0 51 164 68 181 2.00e-63 193
Msa1086190 ATCG00140.1 90.566 53 5 0 1 53 1 53 3.90e-26 95.5

Find 45 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAAGCAGAGGACAAAATA+AGG 0.270738 7_2:-87229008 Msa1086190:CDS
GTGCTAATATTGATATGTTT+GGG 0.275522 7_2:-87227143 Msa1086190:CDS
GCCGTCGGGCTTGCTTCTAT+TGG 0.311843 7_2:-87229090 Msa1086190:CDS
GCTGCTTCTGTTATCGCTGC+TGG 0.315135 7_2:-87229117 Msa1086190:CDS
GGTGCTAATATTGATATGTT+TGG 0.316362 7_2:-87227144 Msa1086190:CDS
CTACTTTCCTTAAGCGGGCC+CGG 0.340021 7_2:+87227409 None:intergenic
GCTGCAGGGCAAGCTGTAGA+AGG 0.363265 7_2:-87229045 Msa1086190:CDS
TAATTCAATTTATACAACTT+TGG 0.388293 7_2:-87227319 Msa1086190:CDS
AGAAAGCCCGGGCCCGCTTA+AGG 0.414131 7_2:-87227416 Msa1086190:CDS
GCTTCTATTGGACCTGGAGT+TGG 0.416315 7_2:-87229078 Msa1086190:CDS
TCGCTGCTGGGTTGGCCGTC+GGG 0.427770 7_2:-87229104 Msa1086190:CDS
ATCGCTGCTGGGTTGGCCGT+CGG 0.428270 7_2:-87229105 Msa1086190:CDS
CGTTTCTACTTTCCTTAAGC+GGG 0.444690 7_2:+87227404 None:intergenic
GCGGATCGGTTTCGAGTGAA+TGG 0.446998 7_2:-87227378 Msa1086190:CDS
TTCAAAATTCAGAAGAACTA+CGG 0.449969 7_2:-87227461 Msa1086190:intron
GGAAGCAGCCGTTGAACAGC+TGG 0.450450 7_2:-87227439 Msa1086190:CDS
ACAAGCATTACAAGGAGCTC+TGG 0.452163 7_2:-87227214 Msa1086190:CDS
CTGCTTCTGTTATCGCTGCT+GGG 0.461552 7_2:-87229116 Msa1086190:CDS
TACTTTCCTTAAGCGGGCCC+GGG 0.461743 7_2:+87227410 None:intergenic
TTGAACAGCTGGAGAAAGCC+CGG 0.472109 7_2:-87227428 Msa1086190:CDS
GGAAGCAGAGGACAAAATAA+GGG 0.473459 7_2:-87229007 Msa1086190:CDS
AGAAGGGATTGCGCGACAAC+CGG 0.475077 7_2:-87229028 Msa1086190:CDS
GGGCTTGCTTCTATTGGACC+TGG 0.481695 7_2:-87229084 Msa1086190:CDS
GTTGGTCAAGGTACAGCTGC+AGG 0.497139 7_2:-87229060 Msa1086190:CDS
GGCTTTCTCCAGCTGTTCAA+CGG 0.504402 7_2:+87227431 None:intergenic
TCAAAATTCAGAAGAACTAC+GGG 0.510719 7_2:-87227460 Msa1086190:intron
TTCTGTTATCGCTGCTGGGT+TGG 0.514112 7_2:-87229112 Msa1086190:CDS
CCGTTTCTACTTTCCTTAAG+CGG 0.521089 7_2:+87227403 None:intergenic
ATTGGACCTGGAGTTGGTCA+AGG 0.543278 7_2:-87229072 Msa1086190:CDS
TGCGCGACAACCGGAAGCAG+AGG 0.554171 7_2:-87229019 Msa1086190:CDS
CAAGCATTACAAGGAGCTCT+GGG 0.568354 7_2:-87227213 Msa1086190:CDS
AAGTAGAAACGGAAGCGGAT+CGG 0.570689 7_2:-87227392 Msa1086190:CDS
CCGCTTAAGGAAAGTAGAAA+CGG 0.573518 7_2:-87227403 Msa1086190:CDS
TGAACAGCTGGAGAAAGCCC+GGG 0.575165 7_2:-87227427 Msa1086190:CDS
CTGCAGGGCAAGCTGTAGAA+GGG 0.582070 7_2:-87229044 Msa1086190:CDS
TGCTAATATTGATATGTTTG+GGG 0.586102 7_2:-87227142 Msa1086190:CDS
GCTGTACCTTGACCAACTCC+AGG 0.593501 7_2:+87229066 None:intergenic
CGATTAATCAAGTGCAACAG+AGG 0.596922 7_2:-87227245 Msa1086190:CDS
GAGTTACATTTACGTACGAT+CGG 0.617220 7_2:-87227165 Msa1086190:CDS
AAGGAAAGTAGAAACGGAAG+CGG 0.622485 7_2:-87227397 Msa1086190:CDS
TCCAATAGAAGCAAGCCCGA+CGG 0.638086 7_2:+87229089 None:intergenic
ACAGAAGCAGCAGAAATCAG+TGG 0.640161 7_2:+87229129 None:intergenic
TTGGTCAAGGTACAGCTGCA+GGG 0.643472 7_2:-87229059 Msa1086190:CDS
GATTAATCAAGTGCAACAGA+GGG 0.644246 7_2:-87227244 Msa1086190:CDS
GAAGCAGAGGACAAAATAAG+GGG 0.658398 7_2:-87229006 Msa1086190:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAGATTAAACAAA+AGG + chr7_2:87227356-87227375 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + chr7_2:87227577-87227596 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + chr7_2:87227578-87227597 None:intergenic 10.0%
!!! TTTTTAAAAGATTAAACAAA+AGG + chr7_2:87227356-87227375 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + chr7_2:87227577-87227596 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + chr7_2:87227578-87227597 None:intergenic 10.0%
!! AATTCTAAATTAAATAAAGG+GGG + chr7_2:87227575-87227594 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + chr7_2:87227576-87227595 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - chr7_2:87227840-87227859 Msa1086190:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - chr7_2:87228026-87228045 Msa1086190:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - chr7_2:87228027-87228046 Msa1086190:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - chr7_2:87228466-87228485 Msa1086190:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + chr7_2:87228548-87228567 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - chr7_2:87228546-87228565 Msa1086190:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - chr7_2:87228935-87228954 Msa1086190:intron 15.0%
!! AATTCTAAATTAAATAAAGG+GGG + chr7_2:87227575-87227594 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + chr7_2:87227576-87227595 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - chr7_2:87227840-87227859 Msa1086190:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - chr7_2:87228026-87228045 Msa1086190:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - chr7_2:87228027-87228046 Msa1086190:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - chr7_2:87228466-87228485 Msa1086190:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + chr7_2:87228548-87228567 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - chr7_2:87228546-87228565 Msa1086190:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - chr7_2:87228935-87228954 Msa1086190:intron 15.0%
!! AAAAGATTAAACAAAAGGAT+TGG + chr7_2:87227351-87227370 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + chr7_2:87227490-87227509 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + chr7_2:87227678-87227697 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - chr7_2:87227839-87227858 Msa1086190:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + chr7_2:87227983-87228002 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - chr7_2:87228021-87228040 Msa1086190:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - chr7_2:87228064-87228083 Msa1086190:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + chr7_2:87228462-87228481 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + chr7_2:87228545-87228564 None:intergenic 20.0%
!! AAAAGATTAAACAAAAGGAT+TGG + chr7_2:87227351-87227370 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + chr7_2:87227490-87227509 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + chr7_2:87227678-87227697 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - chr7_2:87227839-87227858 Msa1086190:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + chr7_2:87227983-87228002 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - chr7_2:87228021-87228040 Msa1086190:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - chr7_2:87228064-87228083 Msa1086190:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + chr7_2:87228462-87228481 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + chr7_2:87228545-87228564 None:intergenic 20.0%
!! ATGGAAGCTTTAACTATTTA+TGG - chr7_2:87227296-87227315 Msa1086190:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - chr7_2:87227297-87227316 Msa1086190:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - chr7_2:87227389-87227408 Msa1086190:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - chr7_2:87227498-87227517 Msa1086190:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - chr7_2:87227875-87227894 Msa1086190:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + chr7_2:87227926-87227945 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + chr7_2:87228096-87228115 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - chr7_2:87228310-87228329 Msa1086190:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - chr7_2:87228384-87228403 Msa1086190:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - chr7_2:87228509-87228528 Msa1086190:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - chr7_2:87228584-87228603 Msa1086190:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - chr7_2:87228612-87228631 Msa1086190:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + chr7_2:87228668-87228687 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - chr7_2:87228670-87228689 Msa1086190:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - chr7_2:87228793-87228812 Msa1086190:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - chr7_2:87228986-87229005 Msa1086190:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - chr7_2:87229111-87229130 Msa1086190:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - chr7_2:87229112-87229131 Msa1086190:CDS 25.0%
!! ATGGAAGCTTTAACTATTTA+TGG - chr7_2:87227296-87227315 Msa1086190:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - chr7_2:87227297-87227316 Msa1086190:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - chr7_2:87227389-87227408 Msa1086190:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - chr7_2:87227498-87227517 Msa1086190:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - chr7_2:87227875-87227894 Msa1086190:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + chr7_2:87227926-87227945 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + chr7_2:87228096-87228115 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - chr7_2:87228310-87228329 Msa1086190:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - chr7_2:87228384-87228403 Msa1086190:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - chr7_2:87228509-87228528 Msa1086190:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - chr7_2:87228584-87228603 Msa1086190:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - chr7_2:87228612-87228631 Msa1086190:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + chr7_2:87228668-87228687 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - chr7_2:87228670-87228689 Msa1086190:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - chr7_2:87228793-87228812 Msa1086190:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - chr7_2:87228986-87229005 Msa1086190:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - chr7_2:87229111-87229130 Msa1086190:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - chr7_2:87229112-87229131 Msa1086190:CDS 25.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - chr7_2:87227277-87227296 Msa1086190:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + chr7_2:87227501-87227520 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - chr7_2:87227628-87227647 Msa1086190:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - chr7_2:87227644-87227663 Msa1086190:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - chr7_2:87227929-87227948 Msa1086190:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - chr7_2:87228003-87228022 Msa1086190:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - chr7_2:87228232-87228251 Msa1086190:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + chr7_2:87228319-87228338 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - chr7_2:87228317-87228336 Msa1086190:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - chr7_2:87228393-87228412 Msa1086190:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + chr7_2:87228436-87228455 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - chr7_2:87228589-87228608 Msa1086190:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - chr7_2:87228611-87228630 Msa1086190:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - chr7_2:87228627-87228646 Msa1086190:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - chr7_2:87228675-87228694 Msa1086190:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - chr7_2:87228794-87228813 Msa1086190:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + chr7_2:87228907-87228926 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - chr7_2:87228985-87229004 Msa1086190:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - chr7_2:87229032-87229051 Msa1086190:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - chr7_2:87229110-87229129 Msa1086190:CDS 30.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - chr7_2:87227277-87227296 Msa1086190:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + chr7_2:87227501-87227520 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - chr7_2:87227628-87227647 Msa1086190:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - chr7_2:87227644-87227663 Msa1086190:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - chr7_2:87227929-87227948 Msa1086190:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - chr7_2:87228003-87228022 Msa1086190:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - chr7_2:87228232-87228251 Msa1086190:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + chr7_2:87228319-87228338 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - chr7_2:87228317-87228336 Msa1086190:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - chr7_2:87228393-87228412 Msa1086190:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + chr7_2:87228436-87228455 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - chr7_2:87228589-87228608 Msa1086190:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - chr7_2:87228611-87228630 Msa1086190:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - chr7_2:87228627-87228646 Msa1086190:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - chr7_2:87228675-87228694 Msa1086190:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - chr7_2:87228794-87228813 Msa1086190:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + chr7_2:87228907-87228926 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - chr7_2:87228985-87229004 Msa1086190:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - chr7_2:87229032-87229051 Msa1086190:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - chr7_2:87229110-87229129 Msa1086190:CDS 30.0%
GGGTACTTTATTACTTAGTC+TGG - chr7_2:87227268-87227287 Msa1086190:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - chr7_2:87227301-87227320 Msa1086190:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + chr7_2:87227548-87227567 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + chr7_2:87227552-87227571 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - chr7_2:87227643-87227662 Msa1086190:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + chr7_2:87228092-87228111 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + chr7_2:87228139-87228158 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + chr7_2:87228245-87228264 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - chr7_2:87228245-87228264 Msa1086190:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + chr7_2:87228265-87228284 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + chr7_2:87228281-87228300 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + chr7_2:87228433-87228452 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - chr7_2:87228676-87228695 Msa1086190:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - chr7_2:87229010-87229029 Msa1086190:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - chr7_2:87229089-87229108 Msa1086190:CDS 35.0%
GGGTACTTTATTACTTAGTC+TGG - chr7_2:87227268-87227287 Msa1086190:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - chr7_2:87227301-87227320 Msa1086190:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + chr7_2:87227548-87227567 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + chr7_2:87227552-87227571 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - chr7_2:87227643-87227662 Msa1086190:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + chr7_2:87228092-87228111 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + chr7_2:87228139-87228158 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + chr7_2:87228245-87228264 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - chr7_2:87228245-87228264 Msa1086190:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + chr7_2:87228265-87228284 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + chr7_2:87228281-87228300 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + chr7_2:87228433-87228452 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - chr7_2:87228676-87228695 Msa1086190:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - chr7_2:87229010-87229029 Msa1086190:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - chr7_2:87229089-87229108 Msa1086190:CDS 35.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + chr7_2:87227248-87227267 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - chr7_2:87227247-87227266 Msa1086190:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - chr7_2:87227248-87227267 Msa1086190:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + chr7_2:87227409-87227428 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + chr7_2:87227541-87227560 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + chr7_2:87227553-87227572 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + chr7_2:87227891-87227910 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - chr7_2:87228117-87228136 Msa1086190:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + chr7_2:87228196-87228215 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - chr7_2:87228194-87228213 Msa1086190:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - chr7_2:87228427-87228446 Msa1086190:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + chr7_2:87228644-87228663 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + chr7_2:87228853-87228872 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + chr7_2:87228854-87228873 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - chr7_2:87228851-87228870 Msa1086190:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - chr7_2:87228857-87228876 Msa1086190:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - chr7_2:87229009-87229028 Msa1086190:CDS 40.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + chr7_2:87227248-87227267 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - chr7_2:87227247-87227266 Msa1086190:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - chr7_2:87227248-87227267 Msa1086190:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + chr7_2:87227409-87227428 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + chr7_2:87227541-87227560 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + chr7_2:87227553-87227572 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + chr7_2:87227891-87227910 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - chr7_2:87228117-87228136 Msa1086190:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + chr7_2:87228196-87228215 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - chr7_2:87228194-87228213 Msa1086190:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - chr7_2:87228427-87228446 Msa1086190:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + chr7_2:87228644-87228663 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + chr7_2:87228853-87228872 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + chr7_2:87228854-87228873 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - chr7_2:87228851-87228870 Msa1086190:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - chr7_2:87228857-87228876 Msa1086190:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - chr7_2:87229009-87229028 Msa1086190:CDS 40.0%
ACAGAAGCAGCAGAAATCAG+TGG + chr7_2:87227128-87227147 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - chr7_2:87227246-87227265 Msa1086190:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + chr7_2:87227565-87227584 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + chr7_2:87227962-87227981 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - chr7_2:87228862-87228881 Msa1086190:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - chr7_2:87229040-87229059 Msa1086190:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - chr7_2:87229041-87229060 Msa1086190:CDS 45.0%
ACAGAAGCAGCAGAAATCAG+TGG + chr7_2:87227128-87227147 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - chr7_2:87227246-87227265 Msa1086190:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + chr7_2:87227565-87227584 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + chr7_2:87227962-87227981 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - chr7_2:87228862-87228881 Msa1086190:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - chr7_2:87229040-87229059 Msa1086190:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - chr7_2:87229041-87229060 Msa1086190:CDS 45.0%
CTGCTTCTGTTATCGCTGCT+GGG - chr7_2:87227138-87227157 Msa1086190:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - chr7_2:87227142-87227161 Msa1086190:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + chr7_2:87227168-87227187 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - chr7_2:87227176-87227195 Msa1086190:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - chr7_2:87227182-87227201 Msa1086190:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - chr7_2:87227195-87227214 Msa1086190:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - chr7_2:87227940-87227959 Msa1086190:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + chr7_2:87227959-87227978 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + chr7_2:87228826-87228845 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - chr7_2:87228826-87228845 Msa1086190:intron 50.0%
CTGCTTCTGTTATCGCTGCT+GGG - chr7_2:87227138-87227157 Msa1086190:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - chr7_2:87227142-87227161 Msa1086190:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + chr7_2:87227168-87227187 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - chr7_2:87227176-87227195 Msa1086190:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - chr7_2:87227182-87227201 Msa1086190:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - chr7_2:87227195-87227214 Msa1086190:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - chr7_2:87227940-87227959 Msa1086190:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + chr7_2:87227959-87227978 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + chr7_2:87228826-87228845 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - chr7_2:87228826-87228845 Msa1086190:intron 50.0%
GCTGCTTCTGTTATCGCTGC+TGG - chr7_2:87227137-87227156 Msa1086190:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - chr7_2:87227170-87227189 Msa1086190:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + chr7_2:87227191-87227210 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - chr7_2:87227194-87227213 Msa1086190:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - chr7_2:87227210-87227229 Msa1086190:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - chr7_2:87227226-87227245 Msa1086190:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - chr7_2:87228827-87228846 Msa1086190:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + chr7_2:87228847-87228866 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + chr7_2:87228848-87228867 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - chr7_2:87228876-87228895 Msa1086190:intron 55.0%
GCTGCTTCTGTTATCGCTGC+TGG - chr7_2:87227137-87227156 Msa1086190:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - chr7_2:87227170-87227189 Msa1086190:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + chr7_2:87227191-87227210 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - chr7_2:87227194-87227213 Msa1086190:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - chr7_2:87227210-87227229 Msa1086190:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - chr7_2:87227226-87227245 Msa1086190:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - chr7_2:87228827-87228846 Msa1086190:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + chr7_2:87228847-87228866 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + chr7_2:87228848-87228867 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - chr7_2:87228876-87228895 Msa1086190:intron 55.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - chr7_2:87227164-87227183 Msa1086190:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - chr7_2:87227209-87227228 Msa1086190:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - chr7_2:87227949-87227968 Msa1086190:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + chr7_2:87227955-87227974 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - chr7_2:87228815-87228834 Msa1086190:intron 60.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - chr7_2:87227164-87227183 Msa1086190:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - chr7_2:87227209-87227228 Msa1086190:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - chr7_2:87227949-87227968 Msa1086190:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + chr7_2:87227955-87227974 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - chr7_2:87228815-87228834 Msa1086190:intron 60.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - chr7_2:87227149-87227168 Msa1086190:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - chr7_2:87227235-87227254 Msa1086190:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - chr7_2:87227950-87227969 Msa1086190:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - chr7_2:87228838-87228857 Msa1086190:intron 65.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - chr7_2:87227149-87227168 Msa1086190:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - chr7_2:87227235-87227254 Msa1086190:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - chr7_2:87227950-87227969 Msa1086190:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - chr7_2:87228838-87228857 Msa1086190:intron 65.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - chr7_2:87227150-87227169 Msa1086190:CDS 70.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - chr7_2:87227150-87227169 Msa1086190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87227119 87229157 87227119 ID=Msa1086190;Name=Msa1086190
chr7_2 mRNA 87227119 87229157 87227119 ID=Msa1086190-mRNA-1;Parent=Msa1086190;Name=Msa1086190-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|167
chr7_2 exon 87229007 87229157 87229007 ID=Msa1086190-mRNA-1:exon:23731;Parent=Msa1086190-mRNA-1
chr7_2 exon 87227119 87227471 87227119 ID=Msa1086190-mRNA-1:exon:23730;Parent=Msa1086190-mRNA-1
chr7_2 CDS 87229007 87229157 87229007 ID=Msa1086190-mRNA-1:cds;Parent=Msa1086190-mRNA-1
chr7_2 CDS 87227119 87227471 87227119 ID=Msa1086190-mRNA-1:cds;Parent=Msa1086190-mRNA-1
Gene Sequence

>Msa1086190

ATGGATCCACTGATTTCTGCTGCTTCTGTTATCGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCAGGGCAAGCTGTAGAAGGGATTGCGCGACAACCGGAAGCAGAGGACAAAATAAGGGAAGAACTACGGGAAGCAGCCGTTGAACAGCTGGAGAAAGCCCGGGCCCGCTTAAGGAAAGTAGAAACGGAAGCGGATCGGTTTCGAGTGAATGGTTATTCCGAGATAGAACGAGAAAAATTGAATTTAATTAATTCAATTTATACAACTTTGGAACAATTCGAAAATTACAAAAATGAAACGATTCATTTTGAACAACAAAGGGCGATTAATCAAGTGCAACAGAGGGTTTTACAACAAGCATTACAAGGAGCTCTGGGAACTCTGAATAGTTGCTTAAACAACGAGTTACATTTACGTACGATCGGTGCTAATATTGATATGTTTGGGGCGATGAAAGAAAAAAAGAACTGA

Protein sequence

>Msa1086190

MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIREELREAAVEQLEKARARLRKVETEADRFRVNGYSEIEREKLNLINSIYTTLEQFENYKNETIHFEQQRAINQVQQRVLQQALQGALGTLNSCLNNELHLRTIGANIDMFGAMKEKKN*