AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344190 MtrunA17_Chr4g0015651 80.660 424 3 5 209 553 7 430 0.0 640
Msa0344190 MtrunA17_Chr4g0016741 80.660 424 3 5 209 553 7 430 0.0 640
Msa0344190 MtrunA17_CPg0492941 80.660 424 3 5 209 553 7 430 0.0 640
Msa0344190 MtrunA17_MTg0490471 54.060 431 110 6 210 552 9 439 6.39e-139 412
Msa0344190 MtrunA17_Chr2g0278821 85.106 188 14 2 380 553 24 211 5.77e-104 315
Msa0344190 MtrunA17_CPg0492961 94.118 119 2 1 95 208 49 167 1.14e-68 219
Msa0344190 MtrunA17_Chr2g0286451 65.574 183 8 2 271 398 7 189 1.96e-67 217
Msa0344190 MtrunA17_Chr4g0040631 88.034 117 4 1 209 315 7 123 7.50e-59 192
Msa0344190 MtrunA17_Chr4g0016711 98.765 81 1 0 1 81 1 81 5.60e-46 156
Msa0344190 MtrunA17_CPg0492971 98.765 81 1 0 1 81 1 81 5.60e-46 156
Msa0344190 MtrunA17_Chr4g0015621 98.765 81 1 0 1 81 1 81 5.60e-46 156
Msa0344190 MtrunA17_Chr4g0061471 73.333 75 8 1 292 354 1 75 9.77e-28 106
Msa0344190 MtrunA17_Chr1g0211291 27.714 350 166 10 227 502 44 380 1.96e-20 94.7
Msa0344190 MtrunA17_Chr7g0250051 27.507 349 167 10 227 502 43 378 6.66e-20 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344190 ATCG00120.1 77.830 424 15 5 209 553 7 430 0.0 619
Msa0344190 ATMG01190.1 51.044 431 123 6 210 552 9 439 6.42e-130 390
Msa0344190 AT2G07698.1 49.257 471 149 7 172 552 239 709 2.83e-128 394
Msa0344190 ATCG00130.1 78.689 122 21 1 93 209 49 170 1.26e-57 191
Msa0344190 ATCG00140.1 95.062 81 4 0 1 81 1 81 6.29e-44 151
Msa0344190 AT4G38510.5 27.794 349 166 10 227 502 50 385 3.39e-21 97.4
Msa0344190 AT4G38510.1 27.794 349 166 10 227 502 43 378 3.60e-21 97.4
Msa0344190 AT4G38510.3 27.794 349 166 10 227 502 43 378 3.60e-21 97.4
Msa0344190 AT4G38510.4 27.794 349 166 10 227 502 43 378 3.60e-21 97.4
Msa0344190 AT4G38510.2 27.794 349 166 10 227 502 43 378 3.60e-21 97.4
Msa0344190 AT1G76030.1 28.378 296 140 7 279 502 82 377 6.16e-20 93.6
Msa0344190 AT1G20260.1 36.000 125 79 1 379 502 254 378 6.94e-15 77.8

Find 127 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAGCTTTAACTATTTA+TGG 0.037973 3_1:+2702437 Msa0344190:CDS
ACCAGTAAGTGAGGGTTATT+TGG 0.166311 3_1:+2704677 Msa0344190:CDS
TGTAGGCATTGCTTTGAATT+TGG 0.201612 3_1:+2704563 Msa0344190:CDS
CCCAAATAACCCTCACTTAC+TGG 0.241036 3_1:-2704678 None:intergenic
TTATTTACATTCTCGTCTTT+TGG 0.245014 3_1:+2705258 Msa0344190:CDS
AAATGTTGGTGTTGTATTAA+TGG 0.258988 3_1:+2704593 Msa0344190:CDS
GGCCAGCGAGAATTAATTAT+TGG 0.267680 3_1:+2704869 Msa0344190:CDS
CGGAAGCAGAGGACAAAATA+AGG 0.270738 3_1:+2702387 Msa0344190:CDS
GGTAGCTGGTAAATTAAAAT+TGG 0.278592 3_1:+2705516 Msa0344190:intron
TCTCGCTGGCCACGCCCTAT+AGG 0.298734 3_1:-2704857 None:intergenic
GCCGTCGGGCTTGCTTCTAT+TGG 0.311843 3_1:+2702305 Msa0344190:CDS
GCTGCTTCTGTTATCGCTGC+TGG 0.315135 3_1:+2702278 Msa0344190:CDS
TGGAAGCTTTAACTATTTAT+GGG 0.316470 3_1:+2702438 Msa0344190:CDS
CTCGCTGGCCACGCCCTATA+GGG 0.318797 3_1:-2704856 None:intergenic
CTACTTTCCTTAAGCGGGCC+CGG 0.340021 3_1:-2703987 None:intergenic
CAATTGCAATAAAATTGATA+TGG 0.357714 3_1:+2706098 Msa0344190:CDS
ATTGATTCTATGATCCCTAT+AGG 0.359827 3_1:+2704842 Msa0344190:CDS
GCTGCAGGGCAAGCTGTAGA+AGG 0.363265 3_1:+2702350 Msa0344190:CDS
GCGATAAGCCTGTGCTTGTT+TGG 0.364708 3_1:-2705176 None:intergenic
GGTATAGGTTCAAATCCTAT+TGG 0.365132 3_1:-2706134 None:intergenic
GCCAGCGAGAATTAATTATT+GGG 0.365780 3_1:+2704870 Msa0344190:CDS
GGGTACTTTATTACTTAGTC+TGG 0.366228 3_1:+2702409 Msa0344190:CDS
CCTGATTGGGTCTCAACTAT+TGG 0.368964 3_1:-2705334 None:intergenic
TGGTAAATTAAAATTGGAAT+TGG 0.382867 3_1:+2705522 Msa0344190:CDS
CACAGTGAGAGGAGCTGATT+GGG 0.383779 3_1:-2705653 None:intergenic
TAATTCAATTTATACAACTT+TGG 0.388293 3_1:+2704077 Msa0344190:CDS
ATTTCTCCTCGACCATCAAT+AGG 0.391542 3_1:-2704726 None:intergenic
AATGTTGGTGTTGTATTAAT+GGG 0.391664 3_1:+2704594 Msa0344190:CDS
TCCTTATACAGGTGCAGCTC+TGG 0.392160 3_1:+2705099 Msa0344190:intron
GCCCTAGCTAAACCTATTGA+TGG 0.393369 3_1:+2704714 Msa0344190:CDS
CCAATAGTTGAGACCCAATC+AGG 0.395916 3_1:+2705334 Msa0344190:CDS
AGATACAATTCTCAATCAAC+AGG 0.401486 3_1:+2704925 Msa0344190:CDS
CCGGGATACGCTTCGCGACC+TGG 0.409309 3_1:-2705226 None:intergenic
AAGCTGAAACATCTCCTGAT+TGG 0.409535 3_1:-2705348 None:intergenic
AGAAAGCCCGGGCCCGCTTA+AGG 0.414131 3_1:+2703980 Msa0344190:CDS
GCTAAATTAAGTTCTCAGTT+AGG 0.415873 3_1:+2705289 Msa0344190:CDS
GCTTCTATTGGACCTGGAGT+TGG 0.416315 3_1:+2702317 Msa0344190:CDS
CCAGTAAGTGAGGGTTATTT+GGG 0.424091 3_1:+2704678 Msa0344190:CDS
ATTATTGGGGACAGACAAAC+AGG 0.427629 3_1:+2704884 Msa0344190:CDS
TCGCTGCTGGGTTGGCCGTC+GGG 0.427770 3_1:+2702291 Msa0344190:CDS
ATCGCTGCTGGGTTGGCCGT+CGG 0.428270 3_1:+2702290 Msa0344190:CDS
AAATATTTGGCCATCTGTAA+TGG 0.434228 3_1:-2705392 None:intergenic
TTGATTCTATGATCCCTATA+GGG 0.437674 3_1:+2704843 Msa0344190:CDS
CCACAGTGAGAGGAGCTGAT+TGG 0.438205 3_1:-2705654 None:intergenic
GTAATGGAAATTACATTAGT+AGG 0.444650 3_1:-2705376 None:intergenic
CGTTTCTACTTTCCTTAAGC+GGG 0.444690 3_1:-2703992 None:intergenic
ATATGTGTTTATGTAGCTAT+TGG 0.445393 3_1:+2704959 Msa0344190:CDS
GCGGATCGGTTTCGAGTGAA+TGG 0.446998 3_1:+2704018 Msa0344190:CDS
TAAAGCTACGCAAAATCAAT+TGG 0.449089 3_1:+2705594 Msa0344190:CDS
TTCAAAATTCAGAAGAACTA+CGG 0.449969 3_1:+2703935 Msa0344190:CDS
GGAAGCAGCCGTTGAACAGC+TGG 0.450450 3_1:+2703957 Msa0344190:CDS
ACAAGCATTACAAGGAGCTC+TGG 0.452163 3_1:+2704182 Msa0344190:CDS
TTCGTAATAGAAGAGACATT+TGG 0.452176 3_1:-2705198 None:intergenic
AGCTGAAACATCTCCTGATT+GGG 0.452206 3_1:-2705347 None:intergenic
GGAAGTTCGGTAAAAGCAAC+AGG 0.457398 3_1:+2704639 Msa0344190:CDS
AAAAGATTAAACAAAAGGAT+TGG 0.459809 3_1:-2702489 None:intergenic
AGCTTTAACTATTTATGGGC+TGG 0.460263 3_1:+2702442 Msa0344190:CDS
CTGCTTCTGTTATCGCTGCT+GGG 0.461552 3_1:+2702279 Msa0344190:CDS
TACTTTCCTTAAGCGGGCCC+GGG 0.461743 3_1:-2703986 None:intergenic
ATAAGCCTGTGCTTGTTTGG+AGG 0.462375 3_1:-2705173 None:intergenic
CGTGTATGAGCCTCTTCAAA+CGG 0.465005 3_1:+2704808 Msa0344190:CDS
TTGAACAGCTGGAGAAAGCC+CGG 0.472109 3_1:+2703968 Msa0344190:CDS
GGAAGCAGAGGACAAAATAA+GGG 0.473459 3_1:+2702388 Msa0344190:CDS
AGAAGGGATTGCGCGACAAC+CGG 0.475077 3_1:+2702367 Msa0344190:CDS
TCGAGGAGAAATTTCAGCTT+CGG 0.476522 3_1:+2704737 Msa0344190:CDS
CCAGGTCGCGAAGCGTATCC+CGG 0.478786 3_1:+2705226 Msa0344190:CDS
GGGCTTGCTTCTATTGGACC+TGG 0.481695 3_1:+2702311 Msa0344190:CDS
TAACTGAGAACTTAATTTAG+CGG 0.485288 3_1:-2705287 None:intergenic
CGCCGATCCAACTCTGGAAA+CGG 0.485937 3_1:-2705470 None:intergenic
TATATTGCTCAATACGTTCA+CGG 0.487151 3_1:-2704422 None:intergenic
AAATTTCAGCTTCGGAATCT+CGG 0.492871 3_1:+2704745 Msa0344190:CDS
GTTGGTCAAGGTACAGCTGC+AGG 0.497139 3_1:+2702335 Msa0344190:CDS
GGTGTTGTATTAATGGGTGA+TGG 0.501676 3_1:+2704600 Msa0344190:CDS
GGCTTTCTCCAGCTGTTCAA+CGG 0.504402 3_1:-2703965 None:intergenic
TCTGCCGATCTATTCAATGC+TGG 0.509351 3_1:+2705418 Msa0344190:CDS
GCTGATACAAGAGGGAAGTT+CGG 0.510716 3_1:+2704626 Msa0344190:CDS
TCAAAATTCAGAAGAACTAC+GGG 0.510719 3_1:+2703936 Msa0344190:CDS
GTGTATGAGCCTCTTCAAAC+GGG 0.511475 3_1:+2704809 Msa0344190:CDS
TTCTGTTATCGCTGCTGGGT+TGG 0.514112 3_1:+2702283 Msa0344190:CDS
TGATTAAAGTGTGACGTTCA+CGG 0.516487 3_1:-2705138 None:intergenic
CCGTTTCTACTTTCCTTAAG+CGG 0.521089 3_1:-2703993 None:intergenic
TAAGCCTGTGCTTGTTTGGA+GGG 0.526272 3_1:-2705172 None:intergenic
GAAATACCCACATTAATAGC+TGG 0.538501 3_1:-2705448 None:intergenic
CCCCAATAATTAATTCTCGC+TGG 0.539649 3_1:-2704871 None:intergenic
GACCATCAATAGGTTTAGCT+AGG 0.542268 3_1:-2704716 None:intergenic
ATTGGACCTGGAGTTGGTCA+AGG 0.543278 3_1:+2702323 Msa0344190:CDS
ATCTGTTCTTCCACAGTGAG+AGG 0.551959 3_1:-2705664 None:intergenic
TGCGCGACAACCGGAAGCAG+AGG 0.554171 3_1:+2702376 Msa0344190:CDS
AATGTAATTTCCATTACAGA+TGG 0.557336 3_1:+2705382 Msa0344190:CDS
AAAGCCATGAAACAGGTAGC+TGG 0.558354 3_1:+2705502 Msa0344190:intron
CAAGCATTACAAGGAGCTCT+GGG 0.568354 3_1:+2704183 Msa0344190:CDS
AAGTAGAAACGGAAGCGGAT+CGG 0.570689 3_1:+2704004 Msa0344190:CDS
CCGCTTAAGGAAAGTAGAAA+CGG 0.573518 3_1:+2703993 Msa0344190:CDS
CGATCCCTCCAAACAAGCAC+AGG 0.574680 3_1:+2705168 Msa0344190:CDS
TGAACAGCTGGAGAAAGCCC+GGG 0.575165 3_1:+2703969 Msa0344190:CDS
TGCTCAGATACCAGTAAGTG+AGG 0.577261 3_1:+2704668 Msa0344190:CDS
TGAATTAGTCGAATTTGAAG+AGG 0.580561 3_1:+2704536 Msa0344190:CDS
CTGCAGGGCAAGCTGTAGAA+GGG 0.582070 3_1:+2702351 Msa0344190:CDS
GCAATAAGTCCCGTTTGAAG+AGG 0.589598 3_1:-2704818 None:intergenic
ACAGGTACTGTACTTCAAGT+AGG 0.592569 3_1:+2704468 Msa0344190:CDS
GCTGTACCTTGACCAACTCC+AGG 0.593501 3_1:-2702329 None:intergenic
GAATTTGAAGAGGGTACTGT+AGG 0.593991 3_1:+2704546 Msa0344190:CDS
CGATTAATCAAGTGCAACAG+AGG 0.596922 3_1:+2704151 Msa0344190:CDS
CTTCTATTACGAAGACCACC+AGG 0.597315 3_1:+2705208 Msa0344190:CDS
ACCATCAATAGGTTTAGCTA+GGG 0.601516 3_1:-2704715 None:intergenic
ATCAGACCAGCTATTAATGT+GGG 0.604091 3_1:+2705442 Msa0344190:CDS
GAGTTACATTTACGTACGAT+CGG 0.617220 3_1:+2704231 Msa0344190:CDS
GAATTAGTCGAATTTGAAGA+GGG 0.619600 3_1:+2704537 Msa0344190:CDS
GCTAAACCTATTGATGGTCG+AGG 0.620970 3_1:+2704720 Msa0344190:CDS
AAGGAAAGTAGAAACGGAAG+CGG 0.622485 3_1:+2703999 Msa0344190:CDS
AATCAGACCAGCTATTAATG+TGG 0.625394 3_1:+2705441 Msa0344190:CDS
GATTCCAGCATTGAATAGAT+CGG 0.626418 3_1:-2705422 None:intergenic
TCTATGATCCCTATAGGGCG+TGG 0.628110 3_1:+2704848 Msa0344190:CDS
CCAGCGAGAATTAATTATTG+GGG 0.636830 3_1:+2704871 Msa0344190:CDS
TCCAATAGAAGCAAGCCCGA+CGG 0.638086 3_1:-2702306 None:intergenic
ACAGAAGCAGCAGAAATCAG+TGG 0.640161 3_1:-2702266 None:intergenic
TTGGTCAAGGTACAGCTGCA+GGG 0.643472 3_1:+2702336 Msa0344190:CDS
GATTAATCAAGTGCAACAGA+GGG 0.644246 3_1:+2704152 Msa0344190:CDS
ACGCAAAATCAATTGGCAAG+AGG 0.645378 3_1:+2705601 Msa0344190:CDS
CGTTTGAAGAGGCTCATACA+CGG 0.655862 3_1:-2704807 None:intergenic
GAAGCAGAGGACAAAATAAG+GGG 0.658398 3_1:+2702389 Msa0344190:CDS
GATGGTTTGCTGATACAAGA+GGG 0.671964 3_1:+2704618 Msa0344190:CDS
GCTCAGATACCAGTAAGTGA+GGG 0.673181 3_1:+2704669 Msa0344190:CDS
TGATGGTTTGCTGATACAAG+AGG 0.676056 3_1:+2704617 Msa0344190:CDS
ACTGTACTTCAAGTAGGCGA+CGG 0.682410 3_1:+2704474 Msa0344190:CDS
GGATACGCTTCGCGACCTGG+TGG 0.699302 3_1:-2705223 None:intergenic
GATACAATTCTCAATCAACA+GGG 0.744742 3_1:+2704926 Msa0344190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAGATTAAACAAA+AGG - chr3_1:2702497-2702516 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG - chr3_1:2702718-2702737 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG - chr3_1:2702719-2702738 None:intergenic 10.0%
!! ACTAATTATGAATATAATAA+AGG - chr3_1:2705944-2705963 None:intergenic 10.0%
!! TACGAATATAATTAATATAT+AGG + chr3_1:2706075-2706094 Msa0344190:intron 10.0%
!! AATTCTAAATTAAATAAAGG+GGG - chr3_1:2702716-2702735 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG - chr3_1:2702717-2702736 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG + chr3_1:2702981-2703000 Msa0344190:intron 15.0%
!!! TGTATTAATTTTTTTGGAAA+GGG + chr3_1:2703167-2703186 Msa0344190:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG + chr3_1:2703606-2703625 Msa0344190:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG - chr3_1:2703690-2703709 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG + chr3_1:2703688-2703707 Msa0344190:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG + chr3_1:2704077-2704096 Msa0344190:CDS 15.0%
!! TTCAAATTAAGAAATATTCA+TGG + chr3_1:2704365-2704384 Msa0344190:intron 15.0%
!!! TGTATTTACAATTTTTACTT+CGG - chr3_1:2704451-2704470 None:intergenic 15.0%
!! AAAAGATTAAACAAAAGGAT+TGG - chr3_1:2702492-2702511 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG - chr3_1:2702631-2702650 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG - chr3_1:2702819-2702838 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG + chr3_1:2702980-2702999 Msa0344190:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG - chr3_1:2703124-2703143 None:intergenic 20.0%
!!! GTGTATTAATTTTTTTGGAA+AGG + chr3_1:2703166-2703185 Msa0344190:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG + chr3_1:2703204-2703223 Msa0344190:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG - chr3_1:2703602-2703621 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG - chr3_1:2703687-2703706 None:intergenic 20.0%
!! GAAGTAAAAATTGTAAATAC+AGG + chr3_1:2704450-2704469 Msa0344190:CDS 20.0%
!! ATGTAAATAAAAAACATCTC+CGG - chr3_1:2705248-2705267 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + chr3_1:2705522-2705541 Msa0344190:CDS 20.0%
!! CAGATAATAACTATTTATAC+TGG + chr3_1:2705682-2705701 Msa0344190:intron 20.0%
!! GATATGATTTCGTTAAATTT+AGG - chr3_1:2705793-2705812 None:intergenic 20.0%
!! CAATTGCAATAAAATTGATA+TGG + chr3_1:2706098-2706117 Msa0344190:CDS 20.0%
!! ATGGAAGCTTTAACTATTTA+TGG + chr3_1:2702437-2702456 Msa0344190:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG + chr3_1:2702438-2702457 Msa0344190:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG + chr3_1:2702531-2702550 Msa0344190:intron 25.0%
! CCTACAATTTATTCTTCATT+CGG + chr3_1:2702639-2702658 Msa0344190:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG + chr3_1:2703016-2703035 Msa0344190:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG - chr3_1:2703067-2703086 None:intergenic 25.0%
!!! GCTAGGTGTATTAATTTTTT+TGG + chr3_1:2703161-2703180 Msa0344190:intron 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG - chr3_1:2703236-2703255 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG + chr3_1:2703450-2703469 Msa0344190:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG + chr3_1:2703524-2703543 Msa0344190:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG + chr3_1:2703726-2703745 Msa0344190:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG + chr3_1:2703754-2703773 Msa0344190:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG - chr3_1:2703810-2703829 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG + chr3_1:2703812-2703831 Msa0344190:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG + chr3_1:2703935-2703954 Msa0344190:CDS 25.0%
!! GATTCATTTTGAACAACAAA+GGG + chr3_1:2704128-2704147 Msa0344190:CDS 25.0%
! GTGCTAATATTGATATGTTT+GGG + chr3_1:2704253-2704272 Msa0344190:intron 25.0%
! TGCTAATATTGATATGTTTG+GGG + chr3_1:2704254-2704273 Msa0344190:intron 25.0%
! TCTACTAGAATATAGAGTAT+AGG + chr3_1:2704308-2704327 Msa0344190:intron 25.0%
!!! TGAATTTGATTCTTTTTCGA+AGG - chr3_1:2704349-2704368 None:intergenic 25.0%
!! AATTTGGAATCCAAAAATGT+TGG + chr3_1:2704579-2704598 Msa0344190:CDS 25.0%
!! TAATACAACACCAACATTTT+TGG - chr3_1:2704592-2704611 None:intergenic 25.0%
!!! AAATGTTGGTGTTGTATTAA+TGG + chr3_1:2704593-2704612 Msa0344190:CDS 25.0%
!!! AATGTTGGTGTTGTATTAAT+GGG + chr3_1:2704594-2704613 Msa0344190:CDS 25.0%
! ATATGTGTTTATGTAGCTAT+TGG + chr3_1:2704959-2704978 Msa0344190:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG + chr3_1:2705011-2705030 Msa0344190:intron 25.0%
! TGTAAATAAAAAACATCTCC+GGG - chr3_1:2705247-2705266 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + chr3_1:2705258-2705277 Msa0344190:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - chr3_1:2705290-2705309 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG - chr3_1:2705379-2705398 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG + chr3_1:2705382-2705401 Msa0344190:CDS 25.0%
! TGATTCATTAGAAATTGATC+AGG + chr3_1:2705720-2705739 Msa0344190:intron 25.0%
! TAAATTTCTCGTTGAGTTAA+GGG + chr3_1:2705747-2705766 Msa0344190:intron 25.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG + chr3_1:2702418-2702437 Msa0344190:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG - chr3_1:2702642-2702661 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG + chr3_1:2702769-2702788 Msa0344190:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG + chr3_1:2702785-2702804 Msa0344190:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG + chr3_1:2703070-2703089 Msa0344190:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG + chr3_1:2703144-2703163 Msa0344190:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG + chr3_1:2703372-2703391 Msa0344190:intron 30.0%
CAATTTCCGTATTAACATAG+TGG - chr3_1:2703459-2703478 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG + chr3_1:2703457-2703476 Msa0344190:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG + chr3_1:2703533-2703552 Msa0344190:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG - chr3_1:2703576-2703595 None:intergenic 30.0%
CTTGCTGACAATTATTTGTT+TGG + chr3_1:2703651-2703670 Msa0344190:intron 30.0%
AGAAATAGAGAAAAGAGGAT+AGG + chr3_1:2703731-2703750 Msa0344190:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG + chr3_1:2703753-2703772 Msa0344190:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG + chr3_1:2703769-2703788 Msa0344190:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG + chr3_1:2703817-2703836 Msa0344190:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG + chr3_1:2703936-2703955 Msa0344190:CDS 30.0%
! CAATTTTTCTCGTTCTATCT+CGG - chr3_1:2704049-2704068 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG + chr3_1:2704127-2704146 Msa0344190:CDS 30.0%
! GTTTTACAACAAGCATTACA+AGG + chr3_1:2704174-2704193 Msa0344190:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG + chr3_1:2704252-2704271 Msa0344190:intron 30.0%
TATATTGCTCAATACGTTCA+CGG - chr3_1:2704425-2704444 None:intergenic 30.0%
! TTATGGTCTTGATGAAGTAA+TGG + chr3_1:2704509-2704528 Msa0344190:intron 30.0%
TGAATTAGTCGAATTTGAAG+AGG + chr3_1:2704536-2704555 Msa0344190:CDS 30.0%
GAATTAGTCGAATTTGAAGA+GGG + chr3_1:2704537-2704556 Msa0344190:CDS 30.0%
! ATTGATTCTATGATCCCTAT+AGG + chr3_1:2704842-2704861 Msa0344190:CDS 30.0%
TTGATTCTATGATCCCTATA+GGG + chr3_1:2704843-2704862 Msa0344190:CDS 30.0%
AGATACAATTCTCAATCAAC+AGG + chr3_1:2704925-2704944 Msa0344190:CDS 30.0%
GATACAATTCTCAATCAACA+GGG + chr3_1:2704926-2704945 Msa0344190:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG + chr3_1:2705010-2705029 Msa0344190:intron 30.0%
AACTACTTTACAAGAAAGAG+GGG + chr3_1:2705012-2705031 Msa0344190:intron 30.0%
AATGGAGTACACTATTATAG+TGG + chr3_1:2705036-2705055 Msa0344190:intron 30.0%
TTCGTAATAGAAGAGACATT+TGG - chr3_1:2705201-2705220 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + chr3_1:2705289-2705308 Msa0344190:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG - chr3_1:2705395-2705414 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG - chr3_1:2705408-2705427 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + chr3_1:2705495-2705514 Msa0344190:intron 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + chr3_1:2705516-2705535 Msa0344190:intron 30.0%
TAAAGCTACGCAAAATCAAT+TGG + chr3_1:2705594-2705613 Msa0344190:CDS 30.0%
ACTATTTATACTGGAACGAA+TGG + chr3_1:2705691-2705710 Msa0344190:intron 30.0%
GTAAATTTCTCGTTGAGTTA+AGG + chr3_1:2705746-2705765 Msa0344190:intron 30.0%
GGGTACTTTATTACTTAGTC+TGG + chr3_1:2702409-2702428 Msa0344190:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG + chr3_1:2702442-2702461 Msa0344190:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG - chr3_1:2702689-2702708 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG - chr3_1:2702693-2702712 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG + chr3_1:2702784-2702803 Msa0344190:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG - chr3_1:2703232-2703251 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG - chr3_1:2703279-2703298 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG - chr3_1:2703385-2703404 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG + chr3_1:2703385-2703404 Msa0344190:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG - chr3_1:2703405-2703424 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG - chr3_1:2703421-2703440 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG - chr3_1:2703573-2703592 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG + chr3_1:2703818-2703837 Msa0344190:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG + chr3_1:2704152-2704171 Msa0344190:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG + chr3_1:2704231-2704250 Msa0344190:CDS 35.0%
ACTAATTTCATCTGCACGAA+TGG - chr3_1:2704394-2704413 None:intergenic 35.0%
! TGTAGGCATTGCTTTGAATT+TGG + chr3_1:2704563-2704582 Msa0344190:CDS 35.0%
ACCATCAATAGGTTTAGCTA+GGG - chr3_1:2704718-2704737 None:intergenic 35.0%
AAATTTCAGCTTCGGAATCT+CGG + chr3_1:2704745-2704764 Msa0344190:CDS 35.0%
GCCAGCGAGAATTAATTATT+GGG + chr3_1:2704870-2704889 Msa0344190:CDS 35.0%
CCAGCGAGAATTAATTATTG+GGG + chr3_1:2704871-2704890 Msa0344190:CDS 35.0%
TGATTAAAGTGTGACGTTCA+CGG - chr3_1:2705141-2705160 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + chr3_1:2705295-2705314 Msa0344190:intron 35.0%
! GATTCCAGCATTGAATAGAT+CGG - chr3_1:2705425-2705444 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG + chr3_1:2705441-2705460 Msa0344190:CDS 35.0%
ATCAGACCAGCTATTAATGT+GGG + chr3_1:2705442-2705461 Msa0344190:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - chr3_1:2705451-2705470 None:intergenic 35.0%
CTGAATAGCTTCCTTCAAAA+GGG - chr3_1:2705848-2705867 None:intergenic 35.0%
! GATGGAACTCTTTTTACTTC+AGG + chr3_1:2705873-2705892 Msa0344190:intron 35.0%
GGAAAAAATTTGCGTCCAAT+AGG + chr3_1:2706119-2706138 Msa0344190:CDS 35.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG - chr3_1:2702389-2702408 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG + chr3_1:2702388-2702407 Msa0344190:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG + chr3_1:2702389-2702408 Msa0344190:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG - chr3_1:2702551-2702570 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG - chr3_1:2702682-2702701 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG - chr3_1:2702694-2702713 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG - chr3_1:2703032-2703051 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG + chr3_1:2703257-2703276 Msa0344190:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG - chr3_1:2703336-2703355 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG + chr3_1:2703334-2703353 Msa0344190:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG + chr3_1:2703567-2703586 Msa0344190:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG - chr3_1:2703786-2703805 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG - chr3_1:2703995-2704014 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG - chr3_1:2703996-2704015 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG + chr3_1:2703993-2704012 Msa0344190:CDS 40.0%
AAGGAAAGTAGAAACGGAAG+CGG + chr3_1:2703999-2704018 Msa0344190:CDS 40.0%
CGATTAATCAAGTGCAACAG+AGG + chr3_1:2704151-2704170 Msa0344190:CDS 40.0%
! ACAGGTACTGTACTTCAAGT+AGG + chr3_1:2704468-2704487 Msa0344190:CDS 40.0%
!! GAATTTGAAGAGGGTACTGT+AGG + chr3_1:2704546-2704565 Msa0344190:CDS 40.0%
! GGTGTTGTATTAATGGGTGA+TGG + chr3_1:2704600-2704619 Msa0344190:CDS 40.0%
!! TGATGGTTTGCTGATACAAG+AGG + chr3_1:2704617-2704636 Msa0344190:CDS 40.0%
!! GATGGTTTGCTGATACAAGA+GGG + chr3_1:2704618-2704637 Msa0344190:CDS 40.0%
ACCAGTAAGTGAGGGTTATT+TGG + chr3_1:2704677-2704696 Msa0344190:CDS 40.0%
CCAGTAAGTGAGGGTTATTT+GGG + chr3_1:2704678-2704697 Msa0344190:CDS 40.0%
GACCATCAATAGGTTTAGCT+AGG - chr3_1:2704719-2704738 None:intergenic 40.0%
ATTTCTCCTCGACCATCAAT+AGG - chr3_1:2704729-2704748 None:intergenic 40.0%
TCGAGGAGAAATTTCAGCTT+CGG + chr3_1:2704737-2704756 Msa0344190:CDS 40.0%
GGAACGTCTGGAAATAATAC+CGG - chr3_1:2704789-2704808 None:intergenic 40.0%
GGCCAGCGAGAATTAATTAT+TGG + chr3_1:2704869-2704888 Msa0344190:CDS 40.0%
CCCCAATAATTAATTCTCGC+TGG - chr3_1:2704874-2704893 None:intergenic 40.0%
ATTATTGGGGACAGACAAAC+AGG + chr3_1:2704884-2704903 Msa0344190:CDS 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG + chr3_1:2704979-2704998 Msa0344190:intron 40.0%
TTTACAAGAAAGAGGGGCAA+TGG + chr3_1:2705018-2705037 Msa0344190:intron 40.0%
AGCTGAAACATCTCCTGATT+GGG - chr3_1:2705350-2705369 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG - chr3_1:2705351-2705370 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG - chr3_1:2705509-2705528 None:intergenic 40.0%
ACGCAAAATCAATTGGCAAG+AGG + chr3_1:2705601-2705620 Msa0344190:CDS 40.0%
TCTTCTACCAAGACATTCAC+TGG + chr3_1:2705811-2705830 Msa0344190:intron 40.0%
CTTCTACCAAGACATTCACT+GGG + chr3_1:2705812-2705831 Msa0344190:intron 40.0%
TTCTACCAAGACATTCACTG+GGG + chr3_1:2705813-2705832 Msa0344190:intron 40.0%
CCTGAATAGCTTCCTTCAAA+AGG - chr3_1:2705849-2705868 None:intergenic 40.0%
!! CCTTTTGAAGGAAGCTATTC+AGG + chr3_1:2705846-2705865 Msa0344190:intron 40.0%
ACAGAAGCAGCAGAAATCAG+TGG - chr3_1:2702269-2702288 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG + chr3_1:2702387-2702406 Msa0344190:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG - chr3_1:2702706-2702725 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG - chr3_1:2703103-2703122 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG + chr3_1:2704004-2704023 Msa0344190:CDS 45.0%
ACAAGCATTACAAGGAGCTC+TGG + chr3_1:2704182-2704201 Msa0344190:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG + chr3_1:2704183-2704202 Msa0344190:CDS 45.0%
ACTGTACTTCAAGTAGGCGA+CGG + chr3_1:2704474-2704493 Msa0344190:CDS 45.0%
GACGGCATTGCTCGTATTTA+TGG + chr3_1:2704492-2704511 Msa0344190:intron 45.0%
GGTCTTGATGAAGTAATGGC+AGG + chr3_1:2704513-2704532 Msa0344190:intron 45.0%
GCTGATACAAGAGGGAAGTT+CGG + chr3_1:2704626-2704645 Msa0344190:CDS 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG + chr3_1:2704639-2704658 Msa0344190:CDS 45.0%
TGCTCAGATACCAGTAAGTG+AGG + chr3_1:2704668-2704687 Msa0344190:CDS 45.0%
GCTCAGATACCAGTAAGTGA+GGG + chr3_1:2704669-2704688 Msa0344190:CDS 45.0%
CCCAAATAACCCTCACTTAC+TGG - chr3_1:2704681-2704700 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG + chr3_1:2704714-2704733 Msa0344190:CDS 45.0%
! GCTAAACCTATTGATGGTCG+AGG + chr3_1:2704720-2704739 Msa0344190:CDS 45.0%
TCTGGAAATAATACCGGAGC+GGG - chr3_1:2704783-2704802 None:intergenic 45.0%
GTCTGGAAATAATACCGGAG+CGG - chr3_1:2704784-2704803 None:intergenic 45.0%
CGTTTGAAGAGGCTCATACA+CGG - chr3_1:2704810-2704829 None:intergenic 45.0%
CGTGTATGAGCCTCTTCAAA+CGG + chr3_1:2704808-2704827 Msa0344190:CDS 45.0%
GTGTATGAGCCTCTTCAAAC+GGG + chr3_1:2704809-2704828 Msa0344190:CDS 45.0%
GCAATAAGTCCCGTTTGAAG+AGG - chr3_1:2704821-2704840 None:intergenic 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG - chr3_1:2705079-2705098 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG + chr3_1:2705088-2705107 Msa0344190:intron 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - chr3_1:2705175-2705194 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - chr3_1:2705176-2705195 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + chr3_1:2705208-2705227 Msa0344190:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG - chr3_1:2705337-2705356 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG + chr3_1:2705334-2705353 Msa0344190:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG + chr3_1:2705418-2705437 Msa0344190:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + chr3_1:2705463-2705482 Msa0344190:intron 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + chr3_1:2705468-2705487 Msa0344190:intron 45.0%
AAAGCCATGAAACAGGTAGC+TGG + chr3_1:2705502-2705521 Msa0344190:intron 45.0%
ATCTGTTCTTCCACAGTGAG+AGG - chr3_1:2705667-2705686 None:intergenic 45.0%
GGAAGCTATTCAGGAACAGA+TGG + chr3_1:2705855-2705874 Msa0344190:intron 45.0%
CTGCTTCTGTTATCGCTGCT+GGG + chr3_1:2702279-2702298 Msa0344190:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG + chr3_1:2702283-2702302 Msa0344190:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG - chr3_1:2702309-2702328 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG + chr3_1:2702317-2702336 Msa0344190:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG + chr3_1:2702323-2702342 Msa0344190:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG + chr3_1:2702336-2702355 Msa0344190:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG + chr3_1:2703081-2703100 Msa0344190:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG - chr3_1:2703100-2703119 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG - chr3_1:2703968-2703987 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG + chr3_1:2703968-2703987 Msa0344190:CDS 50.0%
GTTAATCGAATCTCCCGCTC+CGG + chr3_1:2704767-2704786 Msa0344190:intron 50.0%
TCTATGATCCCTATAGGGCG+TGG + chr3_1:2704848-2704867 Msa0344190:CDS 50.0%
AGCATCTTCTGTGGCTCAAG+TGG + chr3_1:2704988-2705007 Msa0344190:intron 50.0%
TCCTTATACAGGTGCAGCTC+TGG + chr3_1:2705099-2705118 Msa0344190:intron 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - chr3_1:2705179-2705198 None:intergenic 50.0%
CACAGTGAGAGGAGCTGATT+GGG - chr3_1:2705656-2705675 None:intergenic 50.0%
TGCTTCCCCAGTGAATGTCT+TGG - chr3_1:2705821-2705840 None:intergenic 50.0%
! GGAAGCAGAAGCCCTTTTGA+AGG + chr3_1:2705834-2705853 Msa0344190:intron 50.0%
GCTGCTTCTGTTATCGCTGC+TGG + chr3_1:2702278-2702297 Msa0344190:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG + chr3_1:2702311-2702330 Msa0344190:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG - chr3_1:2702332-2702351 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG + chr3_1:2702335-2702354 Msa0344190:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG + chr3_1:2702351-2702370 Msa0344190:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG + chr3_1:2702367-2702386 Msa0344190:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG + chr3_1:2703969-2703988 Msa0344190:CDS 55.0%
TACTTTCCTTAAGCGGGCCC+GGG - chr3_1:2703989-2704008 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG - chr3_1:2703990-2704009 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG + chr3_1:2704018-2704037 Msa0344190:CDS 55.0%
AGGCTCATACACGGAACGTC+TGG - chr3_1:2704801-2704820 None:intergenic 55.0%
CTGCACCTGTATAAGGAGCG+AGG - chr3_1:2705096-2705115 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG - chr3_1:2705103-2705122 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG + chr3_1:2705168-2705187 Msa0344190:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - chr3_1:2705473-2705492 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + chr3_1:2705471-2705490 Msa0344190:intron 55.0%
CCACAGTGAGAGGAGCTGAT+TGG - chr3_1:2705657-2705676 None:intergenic 55.0%
CCAATCAGCTCCTCTCACTG+TGG + chr3_1:2705654-2705673 Msa0344190:intron 55.0%
! GCCGTCGGGCTTGCTTCTAT+TGG + chr3_1:2702305-2702324 Msa0344190:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG + chr3_1:2702350-2702369 Msa0344190:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG + chr3_1:2703090-2703109 Msa0344190:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG - chr3_1:2703096-2703115 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG + chr3_1:2703957-2703976 Msa0344190:CDS 60.0%
TTGAGCCGCCGATCCAACTC+TGG - chr3_1:2705479-2705498 None:intergenic 60.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG + chr3_1:2702290-2702309 Msa0344190:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG + chr3_1:2702376-2702395 Msa0344190:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG + chr3_1:2703091-2703110 Msa0344190:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG + chr3_1:2703980-2703999 Msa0344190:CDS 65.0%
CTCGCTGGCCACGCCCTATA+GGG - chr3_1:2704859-2704878 None:intergenic 65.0%
TCTCGCTGGCCACGCCCTAT+AGG - chr3_1:2704860-2704879 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG - chr3_1:2705226-2705245 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG + chr3_1:2705226-2705245 Msa0344190:CDS 65.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG + chr3_1:2702291-2702310 Msa0344190:CDS 70.0%
CCGGGATACGCTTCGCGACC+TGG - chr3_1:2705229-2705248 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 2702260 2706147 2702260 ID=Msa0344190;Name=Msa0344190
chr3_1 mRNA 2702260 2706147 2702260 ID=Msa0344190-mRNA-1;Parent=Msa0344190;Name=Msa0344190-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.9|0.22|0.1|10|0|569
chr3_1 exon 2702260 2702499 2702260 ID=Msa0344190-mRNA-1:exon:845;Parent=Msa0344190-mRNA-1
chr3_1 exon 2703853 2704039 2703853 ID=Msa0344190-mRNA-1:exon:846;Parent=Msa0344190-mRNA-1
chr3_1 exon 2704055 2704252 2704055 ID=Msa0344190-mRNA-1:exon:847;Parent=Msa0344190-mRNA-1
chr3_1 exon 2704403 2704504 2704403 ID=Msa0344190-mRNA-1:exon:848;Parent=Msa0344190-mRNA-1
chr3_1 exon 2704535 2704766 2704535 ID=Msa0344190-mRNA-1:exon:849;Parent=Msa0344190-mRNA-1
chr3_1 exon 2704802 2704980 2704802 ID=Msa0344190-mRNA-1:exon:850;Parent=Msa0344190-mRNA-1
chr3_1 exon 2705110 2705310 2705110 ID=Msa0344190-mRNA-1:exon:851;Parent=Msa0344190-mRNA-1
chr3_1 exon 2705317 2705480 2705317 ID=Msa0344190-mRNA-1:exon:852;Parent=Msa0344190-mRNA-1
chr3_1 exon 2705517 2705672 2705517 ID=Msa0344190-mRNA-1:exon:853;Parent=Msa0344190-mRNA-1
chr3_1 exon 2706097 2706147 2706097 ID=Msa0344190-mRNA-1:exon:854;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2702260 2702499 2702260 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2703853 2704039 2703853 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2704055 2704252 2704055 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2704403 2704504 2704403 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2704535 2704766 2704535 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2704802 2704980 2704802 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2705110 2705310 2705110 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2705317 2705480 2705317 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2705517 2705672 2705517 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
chr3_1 CDS 2706097 2706147 2706097 ID=Msa0344190-mRNA-1:cds;Parent=Msa0344190-mRNA-1
Gene Sequence

>Msa0344190

ATGGATCCACTGATTTCTGCTGCTTCTGTTATCGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCAGGGCAAGCTGTAGAAGGGATTGCGCGACAACCGGAAGCAGAGGACAAAATAAGGGGTACTTTATTACTTAGTCTGGCTTTTATGGAAGCTTTAACTATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCCAATCCTTTTACATTTTTAAATAAATGCAAAGAGAATCTACTTTCATTAAGTGATTTATTAGATAATCGAAAACAGAGAATCTTGAGAACTATTCAAAATTCAGAAGAACTACGGGAAGCAGCCGTTGAACAGCTGGAGAAAGCCCGGGCCCGCTTAAGGAAAGTAGAAACGGAAGCGGATCGGTTTCGAGTGAATGAACGAGAAAAATTGAATTTAATTAATTCAATTTATACAACTTTGGAACAATTCGAAAATTACAAAAATGAAACGATTCATTTTGAACAACAAAGGGCGATTAATCAAGTGCAACAGAGGGTTTTACAACAAGCATTACAAGGAGCTCTGGGAACTCTGAATAGTTGCTTAAACAACGAGTTACATTTACGTACGATCGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTGAATTAGTCGAATTTGAAGAGGGTACTGTAGGCATTGCTTTGAATTTGGAATCCAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGCTGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTCACTGCAATTGCAATAAAATTGATATGGAAAAAATTTGCGTCCAATAGGATTTGA

Protein sequence

>Msa0344190

MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALALLFANPFTFLNKCKENLLSLSDLLDNRKQRILRTIQNSEELREAAVEQLEKARARLRKVETEADRFRVNEREKLNLINSIYTTLEQFENYKNETIHFEQQRAINQVQQRVLQQALQGALGTLNSCLNNELHLRTIDEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARELVEFEEGTVGIALNLESKNVGVVLMGDGLLIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTAIAIKLIWKKFASNRI*