AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354910 MtrunA17_CPg0492961 74.405 168 35 2 1 167 22 182 1.53e-79 233
Msa1354910 MtrunA17_Chr4g0016711 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa1354910 MtrunA17_CPg0492971 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa1354910 MtrunA17_Chr4g0015621 96.226 53 2 0 1 53 1 53 1.69e-28 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354910 ATCG00130.1 82.456 114 20 0 51 164 68 181 2.00e-63 193
Msa1354910 ATCG00140.1 90.566 53 5 0 1 53 1 53 3.90e-26 95.5

Find 45 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAAGCAGAGGACAAAATA+AGG 0.270738 tig0014543:-586640 Msa1354910:CDS
GTGCTAATATTGATATGTTT+GGG 0.275522 tig0014543:-584774 Msa1354910:CDS
GCCGTCGGGCTTGCTTCTAT+TGG 0.311843 tig0014543:-586722 Msa1354910:CDS
GCTGCTTCTGTTATCGCTGC+TGG 0.315135 tig0014543:-586749 Msa1354910:CDS
GGTGCTAATATTGATATGTT+TGG 0.316362 tig0014543:-584775 Msa1354910:CDS
CTACTTTCCTTAAGCGGGCC+CGG 0.340021 tig0014543:+585040 None:intergenic
GCTGCAGGGCAAGCTGTAGA+AGG 0.363265 tig0014543:-586677 Msa1354910:CDS
TAATTCAATTTATACAACTT+TGG 0.388293 tig0014543:-584950 Msa1354910:CDS
AGAAAGCCCGGGCCCGCTTA+AGG 0.414131 tig0014543:-585047 Msa1354910:CDS
GCTTCTATTGGACCTGGAGT+TGG 0.416315 tig0014543:-586710 Msa1354910:CDS
TCGCTGCTGGGTTGGCCGTC+GGG 0.427770 tig0014543:-586736 Msa1354910:CDS
ATCGCTGCTGGGTTGGCCGT+CGG 0.428270 tig0014543:-586737 Msa1354910:CDS
CGTTTCTACTTTCCTTAAGC+GGG 0.444690 tig0014543:+585035 None:intergenic
GCGGATCGGTTTCGAGTGAA+TGG 0.446998 tig0014543:-585009 Msa1354910:CDS
TTCAAAATTCAGAAGAACTA+CGG 0.449969 tig0014543:-585092 Msa1354910:intron
GGAAGCAGCCGTTGAACAGC+TGG 0.450450 tig0014543:-585070 Msa1354910:CDS
ACAAGCATTACAAGGAGCTC+TGG 0.452163 tig0014543:-584845 Msa1354910:CDS
CTGCTTCTGTTATCGCTGCT+GGG 0.461552 tig0014543:-586748 Msa1354910:CDS
TACTTTCCTTAAGCGGGCCC+GGG 0.461743 tig0014543:+585041 None:intergenic
TTGAACAGCTGGAGAAAGCC+CGG 0.472109 tig0014543:-585059 Msa1354910:CDS
GGAAGCAGAGGACAAAATAA+GGG 0.473459 tig0014543:-586639 Msa1354910:CDS
AGAAGGGATTGCGCGACAAC+CGG 0.475077 tig0014543:-586660 Msa1354910:CDS
GGGCTTGCTTCTATTGGACC+TGG 0.481695 tig0014543:-586716 Msa1354910:CDS
GTTGGTCAAGGTACAGCTGC+AGG 0.497139 tig0014543:-586692 Msa1354910:CDS
GGCTTTCTCCAGCTGTTCAA+CGG 0.504402 tig0014543:+585062 None:intergenic
TCAAAATTCAGAAGAACTAC+GGG 0.510719 tig0014543:-585091 Msa1354910:intron
TTCTGTTATCGCTGCTGGGT+TGG 0.514112 tig0014543:-586744 Msa1354910:CDS
CCGTTTCTACTTTCCTTAAG+CGG 0.521089 tig0014543:+585034 None:intergenic
ATTGGACCTGGAGTTGGTCA+AGG 0.543278 tig0014543:-586704 Msa1354910:CDS
TGCGCGACAACCGGAAGCAG+AGG 0.554171 tig0014543:-586651 Msa1354910:CDS
CAAGCATTACAAGGAGCTCT+GGG 0.568354 tig0014543:-584844 Msa1354910:CDS
AAGTAGAAACGGAAGCGGAT+CGG 0.570689 tig0014543:-585023 Msa1354910:CDS
CCGCTTAAGGAAAGTAGAAA+CGG 0.573518 tig0014543:-585034 Msa1354910:CDS
TGAACAGCTGGAGAAAGCCC+GGG 0.575165 tig0014543:-585058 Msa1354910:CDS
CTGCAGGGCAAGCTGTAGAA+GGG 0.582070 tig0014543:-586676 Msa1354910:CDS
TGCTAATATTGATATGTTTG+GGG 0.586102 tig0014543:-584773 Msa1354910:CDS
GCTGTACCTTGACCAACTCC+AGG 0.593501 tig0014543:+586698 None:intergenic
CGATTAATCAAGTGCAACAG+AGG 0.596922 tig0014543:-584876 Msa1354910:CDS
GAGTTACATTTACGTACGAT+CGG 0.617220 tig0014543:-584796 Msa1354910:CDS
AAGGAAAGTAGAAACGGAAG+CGG 0.622485 tig0014543:-585028 Msa1354910:CDS
TCCAATAGAAGCAAGCCCGA+CGG 0.638086 tig0014543:+586721 None:intergenic
ACAGAAGCAGCAGAAATCAG+TGG 0.640161 tig0014543:+586761 None:intergenic
TTGGTCAAGGTACAGCTGCA+GGG 0.643472 tig0014543:-586691 Msa1354910:CDS
GATTAATCAAGTGCAACAGA+GGG 0.644246 tig0014543:-584875 Msa1354910:CDS
GAAGCAGAGGACAAAATAAG+GGG 0.658398 tig0014543:-586638 Msa1354910:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAGATTAAACAAA+AGG + tig0014543:584987-585006 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + tig0014543:585209-585228 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + tig0014543:585210-585229 None:intergenic 10.0%
!!! TTTTTAAAAGATTAAACAAA+AGG + tig0014543:584987-585006 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + tig0014543:585209-585228 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + tig0014543:585210-585229 None:intergenic 10.0%
!! AATTCTAAATTAAATAAAGG+GGG + tig0014543:585207-585226 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + tig0014543:585208-585227 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - tig0014543:585472-585491 Msa1354910:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - tig0014543:585658-585677 Msa1354910:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - tig0014543:585659-585678 Msa1354910:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - tig0014543:586098-586117 Msa1354910:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + tig0014543:586180-586199 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - tig0014543:586178-586197 Msa1354910:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - tig0014543:586567-586586 Msa1354910:intron 15.0%
!! AATTCTAAATTAAATAAAGG+GGG + tig0014543:585207-585226 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + tig0014543:585208-585227 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - tig0014543:585472-585491 Msa1354910:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - tig0014543:585658-585677 Msa1354910:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - tig0014543:585659-585678 Msa1354910:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - tig0014543:586098-586117 Msa1354910:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + tig0014543:586180-586199 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - tig0014543:586178-586197 Msa1354910:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - tig0014543:586567-586586 Msa1354910:intron 15.0%
!! AAAAGATTAAACAAAAGGAT+TGG + tig0014543:584982-585001 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + tig0014543:585122-585141 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + tig0014543:585310-585329 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - tig0014543:585471-585490 Msa1354910:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + tig0014543:585615-585634 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - tig0014543:585653-585672 Msa1354910:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - tig0014543:585696-585715 Msa1354910:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + tig0014543:586094-586113 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + tig0014543:586177-586196 None:intergenic 20.0%
!! AAAAGATTAAACAAAAGGAT+TGG + tig0014543:584982-585001 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + tig0014543:585122-585141 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + tig0014543:585310-585329 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - tig0014543:585471-585490 Msa1354910:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + tig0014543:585615-585634 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - tig0014543:585653-585672 Msa1354910:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - tig0014543:585696-585715 Msa1354910:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + tig0014543:586094-586113 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + tig0014543:586177-586196 None:intergenic 20.0%
!! ATGGAAGCTTTAACTATTTA+TGG - tig0014543:584927-584946 Msa1354910:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - tig0014543:584928-584947 Msa1354910:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - tig0014543:585021-585040 Msa1354910:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - tig0014543:585130-585149 Msa1354910:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - tig0014543:585507-585526 Msa1354910:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + tig0014543:585558-585577 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + tig0014543:585728-585747 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - tig0014543:585942-585961 Msa1354910:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - tig0014543:586016-586035 Msa1354910:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - tig0014543:586141-586160 Msa1354910:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - tig0014543:586216-586235 Msa1354910:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - tig0014543:586244-586263 Msa1354910:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + tig0014543:586300-586319 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - tig0014543:586302-586321 Msa1354910:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - tig0014543:586425-586444 Msa1354910:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - tig0014543:586618-586637 Msa1354910:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - tig0014543:586743-586762 Msa1354910:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - tig0014543:586744-586763 Msa1354910:CDS 25.0%
!! ATGGAAGCTTTAACTATTTA+TGG - tig0014543:584927-584946 Msa1354910:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - tig0014543:584928-584947 Msa1354910:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - tig0014543:585021-585040 Msa1354910:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - tig0014543:585130-585149 Msa1354910:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - tig0014543:585507-585526 Msa1354910:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + tig0014543:585558-585577 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + tig0014543:585728-585747 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - tig0014543:585942-585961 Msa1354910:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - tig0014543:586016-586035 Msa1354910:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - tig0014543:586141-586160 Msa1354910:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - tig0014543:586216-586235 Msa1354910:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - tig0014543:586244-586263 Msa1354910:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + tig0014543:586300-586319 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - tig0014543:586302-586321 Msa1354910:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - tig0014543:586425-586444 Msa1354910:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - tig0014543:586618-586637 Msa1354910:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - tig0014543:586743-586762 Msa1354910:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - tig0014543:586744-586763 Msa1354910:CDS 25.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - tig0014543:584908-584927 Msa1354910:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + tig0014543:585133-585152 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - tig0014543:585260-585279 Msa1354910:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - tig0014543:585276-585295 Msa1354910:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - tig0014543:585561-585580 Msa1354910:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - tig0014543:585635-585654 Msa1354910:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - tig0014543:585864-585883 Msa1354910:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + tig0014543:585951-585970 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - tig0014543:585949-585968 Msa1354910:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - tig0014543:586025-586044 Msa1354910:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + tig0014543:586068-586087 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - tig0014543:586221-586240 Msa1354910:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - tig0014543:586243-586262 Msa1354910:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - tig0014543:586259-586278 Msa1354910:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - tig0014543:586307-586326 Msa1354910:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - tig0014543:586426-586445 Msa1354910:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + tig0014543:586539-586558 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - tig0014543:586617-586636 Msa1354910:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - tig0014543:586664-586683 Msa1354910:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - tig0014543:586742-586761 Msa1354910:CDS 30.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - tig0014543:584908-584927 Msa1354910:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + tig0014543:585133-585152 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - tig0014543:585260-585279 Msa1354910:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - tig0014543:585276-585295 Msa1354910:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - tig0014543:585561-585580 Msa1354910:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - tig0014543:585635-585654 Msa1354910:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - tig0014543:585864-585883 Msa1354910:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + tig0014543:585951-585970 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - tig0014543:585949-585968 Msa1354910:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - tig0014543:586025-586044 Msa1354910:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + tig0014543:586068-586087 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - tig0014543:586221-586240 Msa1354910:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - tig0014543:586243-586262 Msa1354910:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - tig0014543:586259-586278 Msa1354910:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - tig0014543:586307-586326 Msa1354910:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - tig0014543:586426-586445 Msa1354910:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + tig0014543:586539-586558 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - tig0014543:586617-586636 Msa1354910:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - tig0014543:586664-586683 Msa1354910:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - tig0014543:586742-586761 Msa1354910:CDS 30.0%
GGGTACTTTATTACTTAGTC+TGG - tig0014543:584899-584918 Msa1354910:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - tig0014543:584932-584951 Msa1354910:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + tig0014543:585180-585199 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + tig0014543:585184-585203 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - tig0014543:585275-585294 Msa1354910:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + tig0014543:585724-585743 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + tig0014543:585771-585790 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + tig0014543:585877-585896 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - tig0014543:585877-585896 Msa1354910:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + tig0014543:585897-585916 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + tig0014543:585913-585932 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + tig0014543:586065-586084 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - tig0014543:586308-586327 Msa1354910:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - tig0014543:586642-586661 Msa1354910:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - tig0014543:586721-586740 Msa1354910:CDS 35.0%
GGGTACTTTATTACTTAGTC+TGG - tig0014543:584899-584918 Msa1354910:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - tig0014543:584932-584951 Msa1354910:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + tig0014543:585180-585199 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + tig0014543:585184-585203 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - tig0014543:585275-585294 Msa1354910:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + tig0014543:585724-585743 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + tig0014543:585771-585790 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + tig0014543:585877-585896 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - tig0014543:585877-585896 Msa1354910:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + tig0014543:585897-585916 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + tig0014543:585913-585932 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + tig0014543:586065-586084 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - tig0014543:586308-586327 Msa1354910:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - tig0014543:586642-586661 Msa1354910:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - tig0014543:586721-586740 Msa1354910:CDS 35.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + tig0014543:584879-584898 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - tig0014543:584878-584897 Msa1354910:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - tig0014543:584879-584898 Msa1354910:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + tig0014543:585041-585060 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + tig0014543:585173-585192 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + tig0014543:585185-585204 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + tig0014543:585523-585542 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - tig0014543:585749-585768 Msa1354910:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + tig0014543:585828-585847 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - tig0014543:585826-585845 Msa1354910:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - tig0014543:586059-586078 Msa1354910:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + tig0014543:586276-586295 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + tig0014543:586485-586504 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + tig0014543:586486-586505 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - tig0014543:586483-586502 Msa1354910:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - tig0014543:586489-586508 Msa1354910:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - tig0014543:586641-586660 Msa1354910:CDS 40.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + tig0014543:584879-584898 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - tig0014543:584878-584897 Msa1354910:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - tig0014543:584879-584898 Msa1354910:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + tig0014543:585041-585060 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + tig0014543:585173-585192 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + tig0014543:585185-585204 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + tig0014543:585523-585542 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - tig0014543:585749-585768 Msa1354910:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + tig0014543:585828-585847 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - tig0014543:585826-585845 Msa1354910:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - tig0014543:586059-586078 Msa1354910:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + tig0014543:586276-586295 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + tig0014543:586485-586504 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + tig0014543:586486-586505 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - tig0014543:586483-586502 Msa1354910:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - tig0014543:586489-586508 Msa1354910:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - tig0014543:586641-586660 Msa1354910:CDS 40.0%
ACAGAAGCAGCAGAAATCAG+TGG + tig0014543:584759-584778 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - tig0014543:584877-584896 Msa1354910:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + tig0014543:585197-585216 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + tig0014543:585594-585613 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - tig0014543:586494-586513 Msa1354910:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - tig0014543:586672-586691 Msa1354910:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - tig0014543:586673-586692 Msa1354910:CDS 45.0%
ACAGAAGCAGCAGAAATCAG+TGG + tig0014543:584759-584778 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - tig0014543:584877-584896 Msa1354910:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + tig0014543:585197-585216 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + tig0014543:585594-585613 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - tig0014543:586494-586513 Msa1354910:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - tig0014543:586672-586691 Msa1354910:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - tig0014543:586673-586692 Msa1354910:CDS 45.0%
CTGCTTCTGTTATCGCTGCT+GGG - tig0014543:584769-584788 Msa1354910:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - tig0014543:584773-584792 Msa1354910:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + tig0014543:584799-584818 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - tig0014543:584807-584826 Msa1354910:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - tig0014543:584813-584832 Msa1354910:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - tig0014543:584826-584845 Msa1354910:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - tig0014543:585572-585591 Msa1354910:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + tig0014543:585591-585610 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + tig0014543:586458-586477 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - tig0014543:586458-586477 Msa1354910:intron 50.0%
CTGCTTCTGTTATCGCTGCT+GGG - tig0014543:584769-584788 Msa1354910:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - tig0014543:584773-584792 Msa1354910:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + tig0014543:584799-584818 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - tig0014543:584807-584826 Msa1354910:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - tig0014543:584813-584832 Msa1354910:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - tig0014543:584826-584845 Msa1354910:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - tig0014543:585572-585591 Msa1354910:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + tig0014543:585591-585610 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + tig0014543:586458-586477 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - tig0014543:586458-586477 Msa1354910:intron 50.0%
GCTGCTTCTGTTATCGCTGC+TGG - tig0014543:584768-584787 Msa1354910:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - tig0014543:584801-584820 Msa1354910:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + tig0014543:584822-584841 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - tig0014543:584825-584844 Msa1354910:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - tig0014543:584841-584860 Msa1354910:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - tig0014543:584857-584876 Msa1354910:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - tig0014543:586459-586478 Msa1354910:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + tig0014543:586479-586498 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + tig0014543:586480-586499 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - tig0014543:586508-586527 Msa1354910:intron 55.0%
GCTGCTTCTGTTATCGCTGC+TGG - tig0014543:584768-584787 Msa1354910:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - tig0014543:584801-584820 Msa1354910:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + tig0014543:584822-584841 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - tig0014543:584825-584844 Msa1354910:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - tig0014543:584841-584860 Msa1354910:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - tig0014543:584857-584876 Msa1354910:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - tig0014543:586459-586478 Msa1354910:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + tig0014543:586479-586498 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + tig0014543:586480-586499 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - tig0014543:586508-586527 Msa1354910:intron 55.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - tig0014543:584795-584814 Msa1354910:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - tig0014543:584840-584859 Msa1354910:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - tig0014543:585581-585600 Msa1354910:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + tig0014543:585587-585606 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - tig0014543:586447-586466 Msa1354910:intron 60.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - tig0014543:584795-584814 Msa1354910:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - tig0014543:584840-584859 Msa1354910:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - tig0014543:585581-585600 Msa1354910:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + tig0014543:585587-585606 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - tig0014543:586447-586466 Msa1354910:intron 60.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - tig0014543:584780-584799 Msa1354910:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - tig0014543:584866-584885 Msa1354910:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - tig0014543:585582-585601 Msa1354910:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - tig0014543:586470-586489 Msa1354910:intron 65.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - tig0014543:584780-584799 Msa1354910:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - tig0014543:584866-584885 Msa1354910:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - tig0014543:585582-585601 Msa1354910:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - tig0014543:586470-586489 Msa1354910:intron 65.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - tig0014543:584781-584800 Msa1354910:CDS 70.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - tig0014543:584781-584800 Msa1354910:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 584750 586789 584750 ID=Msa1354910;Name=Msa1354910
tig0014543 mRNA 584750 586789 584750 ID=Msa1354910-mRNA-1;Parent=Msa1354910;Name=Msa1354910-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|167
tig0014543 exon 586639 586789 586639 ID=Msa1354910-mRNA-1:exon:9297;Parent=Msa1354910-mRNA-1
tig0014543 exon 584750 585102 584750 ID=Msa1354910-mRNA-1:exon:9296;Parent=Msa1354910-mRNA-1
tig0014543 CDS 586639 586789 586639 ID=Msa1354910-mRNA-1:cds;Parent=Msa1354910-mRNA-1
tig0014543 CDS 584750 585102 584750 ID=Msa1354910-mRNA-1:cds;Parent=Msa1354910-mRNA-1
Gene Sequence

>Msa1354910

ATGGATCCACTGATTTCTGCTGCTTCTGTTATCGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCAGGGCAAGCTGTAGAAGGGATTGCGCGACAACCGGAAGCAGAGGACAAAATAAGGGAAGAACTACGGGAAGCAGCCGTTGAACAGCTGGAGAAAGCCCGGGCCCGCTTAAGGAAAGTAGAAACGGAAGCGGATCGGTTTCGAGTGAATGGTTATTCCGAGATAGAACGAGAAAAATTGAATTTAATTAATTCAATTTATACAACTTTGGAACAATTCGAAAATTACAAAAATGAAACGATTCATTTTGAACAACAAAGGGCGATTAATCAAGTGCAACAGAGGGTTTTACAACAAGCATTACAAGGAGCTCTGGGAACTCTGAATAGTTGCTTAAACAACGAGTTACATTTACGTACGATCGGTGCTAATATTGATATGTTTGGGGCGATGAAAGAAAAAAAGAACTGA

Protein sequence

>Msa1354910

MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIREELREAAVEQLEKARARLRKVETEADRFRVNGYSEIEREKLNLINSIYTTLEQFENYKNETIHFEQQRAINQVQQRVLQQALQGALGTLNSCLNNELHLRTIGANIDMFGAMKEKKN*