AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086080 MtrunA17_CPg0492961 74.405 168 35 2 1 167 22 182 1.53e-79 233
Msa1086080 MtrunA17_Chr4g0016711 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa1086080 MtrunA17_CPg0492971 96.226 53 2 0 1 53 1 53 1.69e-28 100
Msa1086080 MtrunA17_Chr4g0015621 96.226 53 2 0 1 53 1 53 1.69e-28 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086080 ATCG00130.1 82.456 114 20 0 51 164 68 181 2.00e-63 193
Msa1086080 ATCG00140.1 90.566 53 5 0 1 53 1 53 3.90e-26 95.5

Find 45 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAAGCAGAGGACAAAATA+AGG 0.270738 7_2:-87117005 Msa1086080:CDS
GTGCTAATATTGATATGTTT+GGG 0.275522 7_2:-87115139 Msa1086080:CDS
GCCGTCGGGCTTGCTTCTAT+TGG 0.311843 7_2:-87117087 Msa1086080:CDS
GCTGCTTCTGTTATCGCTGC+TGG 0.315135 7_2:-87117114 Msa1086080:CDS
GGTGCTAATATTGATATGTT+TGG 0.316362 7_2:-87115140 Msa1086080:CDS
CTACTTTCCTTAAGCGGGCC+CGG 0.340021 7_2:+87115405 None:intergenic
GCTGCAGGGCAAGCTGTAGA+AGG 0.363265 7_2:-87117042 Msa1086080:CDS
TAATTCAATTTATACAACTT+TGG 0.388293 7_2:-87115315 Msa1086080:CDS
AGAAAGCCCGGGCCCGCTTA+AGG 0.414131 7_2:-87115412 Msa1086080:CDS
GCTTCTATTGGACCTGGAGT+TGG 0.416315 7_2:-87117075 Msa1086080:CDS
TCGCTGCTGGGTTGGCCGTC+GGG 0.427770 7_2:-87117101 Msa1086080:CDS
ATCGCTGCTGGGTTGGCCGT+CGG 0.428270 7_2:-87117102 Msa1086080:CDS
CGTTTCTACTTTCCTTAAGC+GGG 0.444690 7_2:+87115400 None:intergenic
GCGGATCGGTTTCGAGTGAA+TGG 0.446998 7_2:-87115374 Msa1086080:CDS
TTCAAAATTCAGAAGAACTA+CGG 0.449969 7_2:-87115457 Msa1086080:intron
GGAAGCAGCCGTTGAACAGC+TGG 0.450450 7_2:-87115435 Msa1086080:CDS
ACAAGCATTACAAGGAGCTC+TGG 0.452163 7_2:-87115210 Msa1086080:CDS
CTGCTTCTGTTATCGCTGCT+GGG 0.461552 7_2:-87117113 Msa1086080:CDS
TACTTTCCTTAAGCGGGCCC+GGG 0.461743 7_2:+87115406 None:intergenic
TTGAACAGCTGGAGAAAGCC+CGG 0.472109 7_2:-87115424 Msa1086080:CDS
GGAAGCAGAGGACAAAATAA+GGG 0.473459 7_2:-87117004 Msa1086080:CDS
AGAAGGGATTGCGCGACAAC+CGG 0.475077 7_2:-87117025 Msa1086080:CDS
GGGCTTGCTTCTATTGGACC+TGG 0.481695 7_2:-87117081 Msa1086080:CDS
GTTGGTCAAGGTACAGCTGC+AGG 0.497139 7_2:-87117057 Msa1086080:CDS
GGCTTTCTCCAGCTGTTCAA+CGG 0.504402 7_2:+87115427 None:intergenic
TCAAAATTCAGAAGAACTAC+GGG 0.510719 7_2:-87115456 Msa1086080:intron
TTCTGTTATCGCTGCTGGGT+TGG 0.514112 7_2:-87117109 Msa1086080:CDS
CCGTTTCTACTTTCCTTAAG+CGG 0.521089 7_2:+87115399 None:intergenic
ATTGGACCTGGAGTTGGTCA+AGG 0.543278 7_2:-87117069 Msa1086080:CDS
TGCGCGACAACCGGAAGCAG+AGG 0.554171 7_2:-87117016 Msa1086080:CDS
CAAGCATTACAAGGAGCTCT+GGG 0.568354 7_2:-87115209 Msa1086080:CDS
AAGTAGAAACGGAAGCGGAT+CGG 0.570689 7_2:-87115388 Msa1086080:CDS
CCGCTTAAGGAAAGTAGAAA+CGG 0.573518 7_2:-87115399 Msa1086080:CDS
TGAACAGCTGGAGAAAGCCC+GGG 0.575165 7_2:-87115423 Msa1086080:CDS
CTGCAGGGCAAGCTGTAGAA+GGG 0.582070 7_2:-87117041 Msa1086080:CDS
TGCTAATATTGATATGTTTG+GGG 0.586102 7_2:-87115138 Msa1086080:CDS
GCTGTACCTTGACCAACTCC+AGG 0.593501 7_2:+87117063 None:intergenic
CGATTAATCAAGTGCAACAG+AGG 0.596922 7_2:-87115241 Msa1086080:CDS
GAGTTACATTTACGTACGAT+CGG 0.617220 7_2:-87115161 Msa1086080:CDS
AAGGAAAGTAGAAACGGAAG+CGG 0.622485 7_2:-87115393 Msa1086080:CDS
TCCAATAGAAGCAAGCCCGA+CGG 0.638086 7_2:+87117086 None:intergenic
ACAGAAGCAGCAGAAATCAG+TGG 0.640161 7_2:+87117126 None:intergenic
TTGGTCAAGGTACAGCTGCA+GGG 0.643472 7_2:-87117056 Msa1086080:CDS
GATTAATCAAGTGCAACAGA+GGG 0.644246 7_2:-87115240 Msa1086080:CDS
GAAGCAGAGGACAAAATAAG+GGG 0.658398 7_2:-87117003 Msa1086080:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAGATTAAACAAA+AGG + chr7_2:87115352-87115371 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + chr7_2:87115574-87115593 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + chr7_2:87115575-87115594 None:intergenic 10.0%
!!! TTTTTAAAAGATTAAACAAA+AGG + chr7_2:87115352-87115371 None:intergenic 10.0%
!! TCAATTCTAAATTAAATAAA+GGG + chr7_2:87115574-87115593 None:intergenic 10.0%
!! TTCAATTCTAAATTAAATAA+AGG + chr7_2:87115575-87115594 None:intergenic 10.0%
!! AATTCTAAATTAAATAAAGG+GGG + chr7_2:87115572-87115591 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + chr7_2:87115573-87115592 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - chr7_2:87115837-87115856 Msa1086080:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - chr7_2:87116023-87116042 Msa1086080:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - chr7_2:87116024-87116043 Msa1086080:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - chr7_2:87116463-87116482 Msa1086080:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + chr7_2:87116545-87116564 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - chr7_2:87116543-87116562 Msa1086080:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - chr7_2:87116932-87116951 Msa1086080:intron 15.0%
!! AATTCTAAATTAAATAAAGG+GGG + chr7_2:87115572-87115591 None:intergenic 15.0%
!! CAATTCTAAATTAAATAAAG+GGG + chr7_2:87115573-87115592 None:intergenic 15.0%
!! AATCAAAAAATCAAAAAACT+GGG - chr7_2:87115837-87115856 Msa1086080:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG - chr7_2:87116023-87116042 Msa1086080:intron 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG - chr7_2:87116024-87116043 Msa1086080:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG - chr7_2:87116463-87116482 Msa1086080:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG + chr7_2:87116545-87116564 None:intergenic 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG - chr7_2:87116543-87116562 Msa1086080:intron 15.0%
!! TAATTCAATTTATACAACTT+TGG - chr7_2:87116932-87116951 Msa1086080:intron 15.0%
!! AAAAGATTAAACAAAAGGAT+TGG + chr7_2:87115347-87115366 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + chr7_2:87115487-87115506 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + chr7_2:87115675-87115694 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - chr7_2:87115836-87115855 Msa1086080:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + chr7_2:87115980-87115999 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - chr7_2:87116018-87116037 Msa1086080:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - chr7_2:87116061-87116080 Msa1086080:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + chr7_2:87116459-87116478 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + chr7_2:87116542-87116561 None:intergenic 20.0%
!! AAAAGATTAAACAAAAGGAT+TGG + chr7_2:87115347-87115366 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG + chr7_2:87115487-87115506 None:intergenic 20.0%
!! TAGATTCTATATTCTCTAAT+TGG + chr7_2:87115675-87115694 None:intergenic 20.0%
!! GAATCAAAAAATCAAAAAAC+TGG - chr7_2:87115836-87115855 Msa1086080:intron 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + chr7_2:87115980-87115999 None:intergenic 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG - chr7_2:87116018-87116037 Msa1086080:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG - chr7_2:87116061-87116080 Msa1086080:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG + chr7_2:87116459-87116478 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG + chr7_2:87116542-87116561 None:intergenic 20.0%
!! ATGGAAGCTTTAACTATTTA+TGG - chr7_2:87115292-87115311 Msa1086080:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - chr7_2:87115293-87115312 Msa1086080:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - chr7_2:87115386-87115405 Msa1086080:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - chr7_2:87115495-87115514 Msa1086080:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - chr7_2:87115872-87115891 Msa1086080:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + chr7_2:87115923-87115942 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + chr7_2:87116093-87116112 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - chr7_2:87116307-87116326 Msa1086080:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - chr7_2:87116381-87116400 Msa1086080:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - chr7_2:87116506-87116525 Msa1086080:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - chr7_2:87116581-87116600 Msa1086080:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - chr7_2:87116609-87116628 Msa1086080:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + chr7_2:87116665-87116684 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - chr7_2:87116667-87116686 Msa1086080:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - chr7_2:87116790-87116809 Msa1086080:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - chr7_2:87116983-87117002 Msa1086080:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - chr7_2:87117108-87117127 Msa1086080:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - chr7_2:87117109-87117128 Msa1086080:CDS 25.0%
!! ATGGAAGCTTTAACTATTTA+TGG - chr7_2:87115292-87115311 Msa1086080:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG - chr7_2:87115293-87115312 Msa1086080:CDS 25.0%
!!! AATACATATTGTTTTTTCCG+TGG - chr7_2:87115386-87115405 Msa1086080:CDS 25.0%
! CCTACAATTTATTCTTCATT+CGG - chr7_2:87115495-87115514 Msa1086080:intron 25.0%
!! AAAATTAGTCTATCCATAAG+AGG - chr7_2:87115872-87115891 Msa1086080:intron 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG + chr7_2:87115923-87115942 None:intergenic 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG + chr7_2:87116093-87116112 None:intergenic 25.0%
! TTTCTACCACTATGTTAATA+CGG - chr7_2:87116307-87116326 Msa1086080:intron 25.0%
! TTCTCTTTACGATGAAAAAT+AGG - chr7_2:87116381-87116400 Msa1086080:intron 25.0%
! TTTGCTGACAATTATTTGTT+TGG - chr7_2:87116506-87116525 Msa1086080:intron 25.0%
! TGTTTAGAAATAGAGAAAAG+AGG - chr7_2:87116581-87116600 Msa1086080:intron 25.0%
! CTCATTCGATAATAAAGATA+GGG - chr7_2:87116609-87116628 Msa1086080:intron 25.0%
! CATGAATCTTTCAATTCATT+TGG + chr7_2:87116665-87116684 None:intergenic 25.0%
! TGAATTGAAAGATTCATGTT+TGG - chr7_2:87116667-87116686 Msa1086080:intron 25.0%
! TTCAAAATTCAGAAGAACTA+CGG - chr7_2:87116790-87116809 Msa1086080:intron 25.0%
!! GATTCATTTTGAACAACAAA+GGG - chr7_2:87116983-87117002 Msa1086080:intron 25.0%
! GTGCTAATATTGATATGTTT+GGG - chr7_2:87117108-87117127 Msa1086080:CDS 25.0%
! TGCTAATATTGATATGTTTG+GGG - chr7_2:87117109-87117128 Msa1086080:CDS 25.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - chr7_2:87115273-87115292 Msa1086080:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + chr7_2:87115498-87115517 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - chr7_2:87115625-87115644 Msa1086080:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - chr7_2:87115641-87115660 Msa1086080:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - chr7_2:87115926-87115945 Msa1086080:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - chr7_2:87116000-87116019 Msa1086080:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - chr7_2:87116229-87116248 Msa1086080:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + chr7_2:87116316-87116335 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - chr7_2:87116314-87116333 Msa1086080:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - chr7_2:87116390-87116409 Msa1086080:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + chr7_2:87116433-87116452 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - chr7_2:87116586-87116605 Msa1086080:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - chr7_2:87116608-87116627 Msa1086080:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - chr7_2:87116624-87116643 Msa1086080:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - chr7_2:87116672-87116691 Msa1086080:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - chr7_2:87116791-87116810 Msa1086080:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + chr7_2:87116904-87116923 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - chr7_2:87116982-87117001 Msa1086080:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - chr7_2:87117029-87117048 Msa1086080:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - chr7_2:87117107-87117126 Msa1086080:CDS 30.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG - chr7_2:87115273-87115292 Msa1086080:CDS 30.0%
CCGAATGAAGAATAAATTGT+AGG + chr7_2:87115498-87115517 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG - chr7_2:87115625-87115644 Msa1086080:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG - chr7_2:87115641-87115660 Msa1086080:intron 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG - chr7_2:87115926-87115945 Msa1086080:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - chr7_2:87116000-87116019 Msa1086080:intron 30.0%
! TCTCTATCAACCAAGAATTT+TGG - chr7_2:87116229-87116248 Msa1086080:intron 30.0%
CAATTTCCGTATTAACATAG+TGG + chr7_2:87116316-87116335 None:intergenic 30.0%
CACTATGTTAATACGGAAAT+TGG - chr7_2:87116314-87116333 Msa1086080:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG - chr7_2:87116390-87116409 Msa1086080:intron 30.0%
TCAATTCCGCATTGTATAAA+AGG + chr7_2:87116433-87116452 None:intergenic 30.0%
AGAAATAGAGAAAAGAGGAT+AGG - chr7_2:87116586-87116605 Msa1086080:intron 30.0%
GCTCATTCGATAATAAAGAT+AGG - chr7_2:87116608-87116627 Msa1086080:intron 30.0%
AGATAGGGAAATTTCCTATA+CGG - chr7_2:87116624-87116643 Msa1086080:intron 30.0%
TGAAAGATTCATGTTTGGTT+CGG - chr7_2:87116672-87116691 Msa1086080:intron 30.0%
TCAAAATTCAGAAGAACTAC+GGG - chr7_2:87116791-87116810 Msa1086080:intron 30.0%
! CAATTTTTCTCGTTCTATCT+CGG + chr7_2:87116904-87116923 None:intergenic 30.0%
! CGATTCATTTTGAACAACAA+AGG - chr7_2:87116982-87117001 Msa1086080:intron 30.0%
! GTTTTACAACAAGCATTACA+AGG - chr7_2:87117029-87117048 Msa1086080:CDS 30.0%
GGTGCTAATATTGATATGTT+TGG - chr7_2:87117107-87117126 Msa1086080:CDS 30.0%
GGGTACTTTATTACTTAGTC+TGG - chr7_2:87115264-87115283 Msa1086080:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - chr7_2:87115297-87115316 Msa1086080:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + chr7_2:87115545-87115564 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + chr7_2:87115549-87115568 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - chr7_2:87115640-87115659 Msa1086080:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + chr7_2:87116089-87116108 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + chr7_2:87116136-87116155 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + chr7_2:87116242-87116261 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - chr7_2:87116242-87116261 Msa1086080:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + chr7_2:87116262-87116281 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + chr7_2:87116278-87116297 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + chr7_2:87116430-87116449 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - chr7_2:87116673-87116692 Msa1086080:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - chr7_2:87117007-87117026 Msa1086080:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - chr7_2:87117086-87117105 Msa1086080:CDS 35.0%
GGGTACTTTATTACTTAGTC+TGG - chr7_2:87115264-87115283 Msa1086080:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG - chr7_2:87115297-87115316 Msa1086080:CDS 35.0%
CATTGGACTAAATAAAGGGA+CGG + chr7_2:87115545-87115564 None:intergenic 35.0%
CGCTCATTGGACTAAATAAA+GGG + chr7_2:87115549-87115568 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG - chr7_2:87115640-87115659 Msa1086080:intron 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG + chr7_2:87116089-87116108 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG + chr7_2:87116136-87116155 None:intergenic 35.0%
! TGGTAATGCTCCAAAATTCT+TGG + chr7_2:87116242-87116261 None:intergenic 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG - chr7_2:87116242-87116261 Msa1086080:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG + chr7_2:87116262-87116281 None:intergenic 35.0%
ATTGCGTCTAAACTTCAAAC+TGG + chr7_2:87116278-87116297 None:intergenic 35.0%
ATTCCGCATTGTATAAAAGG+AGG + chr7_2:87116430-87116449 None:intergenic 35.0%
! GAAAGATTCATGTTTGGTTC+GGG - chr7_2:87116673-87116692 Msa1086080:intron 35.0%
GATTAATCAAGTGCAACAGA+GGG - chr7_2:87117007-87117026 Msa1086080:CDS 35.0%
GAGTTACATTTACGTACGAT+CGG - chr7_2:87117086-87117105 Msa1086080:CDS 35.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + chr7_2:87115244-87115263 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - chr7_2:87115243-87115262 Msa1086080:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - chr7_2:87115244-87115263 Msa1086080:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + chr7_2:87115406-87115425 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + chr7_2:87115538-87115557 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + chr7_2:87115550-87115569 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + chr7_2:87115888-87115907 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - chr7_2:87116114-87116133 Msa1086080:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + chr7_2:87116193-87116212 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - chr7_2:87116191-87116210 Msa1086080:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - chr7_2:87116424-87116443 Msa1086080:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + chr7_2:87116641-87116660 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + chr7_2:87116850-87116869 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + chr7_2:87116851-87116870 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - chr7_2:87116848-87116867 Msa1086080:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - chr7_2:87116854-87116873 Msa1086080:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - chr7_2:87117006-87117025 Msa1086080:CDS 40.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG + chr7_2:87115244-87115263 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG - chr7_2:87115243-87115262 Msa1086080:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG - chr7_2:87115244-87115263 Msa1086080:CDS 40.0%
ATAGCAGCAATGAAAGTCCA+CGG + chr7_2:87115406-87115425 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG + chr7_2:87115538-87115557 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG + chr7_2:87115550-87115569 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG + chr7_2:87115888-87115907 None:intergenic 40.0%
CTAGAAAAACGTGCATGATC+CGG - chr7_2:87116114-87116133 Msa1086080:intron 40.0%
CAATGAATCGCGAAATGCTA+TGG + chr7_2:87116193-87116212 None:intergenic 40.0%
CATAGCATTTCGCGATTCAT+TGG - chr7_2:87116191-87116210 Msa1086080:intron 40.0%
! ACGCCTCCTTTTATACAATG+CGG - chr7_2:87116424-87116443 Msa1086080:intron 40.0%
TCTCACACTCAATTCCGTAT+AGG + chr7_2:87116641-87116660 None:intergenic 40.0%
CGTTTCTACTTTCCTTAAGC+GGG + chr7_2:87116850-87116869 None:intergenic 40.0%
CCGTTTCTACTTTCCTTAAG+CGG + chr7_2:87116851-87116870 None:intergenic 40.0%
CCGCTTAAGGAAAGTAGAAA+CGG - chr7_2:87116848-87116867 Msa1086080:intron 40.0%
AAGGAAAGTAGAAACGGAAG+CGG - chr7_2:87116854-87116873 Msa1086080:intron 40.0%
CGATTAATCAAGTGCAACAG+AGG - chr7_2:87117006-87117025 Msa1086080:CDS 40.0%
ACAGAAGCAGCAGAAATCAG+TGG + chr7_2:87115124-87115143 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - chr7_2:87115242-87115261 Msa1086080:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + chr7_2:87115562-87115581 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + chr7_2:87115959-87115978 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - chr7_2:87116859-87116878 Msa1086080:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - chr7_2:87117037-87117056 Msa1086080:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - chr7_2:87117038-87117057 Msa1086080:CDS 45.0%
ACAGAAGCAGCAGAAATCAG+TGG + chr7_2:87115124-87115143 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG - chr7_2:87115242-87115261 Msa1086080:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG + chr7_2:87115562-87115581 None:intergenic 45.0%
GGTATCAAACCCGAAACTTC+CGG + chr7_2:87115959-87115978 None:intergenic 45.0%
AAGTAGAAACGGAAGCGGAT+CGG - chr7_2:87116859-87116878 Msa1086080:intron 45.0%
ACAAGCATTACAAGGAGCTC+TGG - chr7_2:87117037-87117056 Msa1086080:CDS 45.0%
CAAGCATTACAAGGAGCTCT+GGG - chr7_2:87117038-87117057 Msa1086080:CDS 45.0%
CTGCTTCTGTTATCGCTGCT+GGG - chr7_2:87115134-87115153 Msa1086080:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - chr7_2:87115138-87115157 Msa1086080:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + chr7_2:87115164-87115183 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - chr7_2:87115172-87115191 Msa1086080:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - chr7_2:87115178-87115197 Msa1086080:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - chr7_2:87115191-87115210 Msa1086080:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - chr7_2:87115937-87115956 Msa1086080:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + chr7_2:87115956-87115975 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + chr7_2:87116823-87116842 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - chr7_2:87116823-87116842 Msa1086080:intron 50.0%
CTGCTTCTGTTATCGCTGCT+GGG - chr7_2:87115134-87115153 Msa1086080:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG - chr7_2:87115138-87115157 Msa1086080:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG + chr7_2:87115164-87115183 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG - chr7_2:87115172-87115191 Msa1086080:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG - chr7_2:87115178-87115197 Msa1086080:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG - chr7_2:87115191-87115210 Msa1086080:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG - chr7_2:87115937-87115956 Msa1086080:intron 50.0%
ATCAAACCCGAAACTTCCGG+CGG + chr7_2:87115956-87115975 None:intergenic 50.0%
GGCTTTCTCCAGCTGTTCAA+CGG + chr7_2:87116823-87116842 None:intergenic 50.0%
TTGAACAGCTGGAGAAAGCC+CGG - chr7_2:87116823-87116842 Msa1086080:intron 50.0%
GCTGCTTCTGTTATCGCTGC+TGG - chr7_2:87115133-87115152 Msa1086080:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - chr7_2:87115166-87115185 Msa1086080:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + chr7_2:87115187-87115206 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - chr7_2:87115190-87115209 Msa1086080:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - chr7_2:87115206-87115225 Msa1086080:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - chr7_2:87115222-87115241 Msa1086080:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - chr7_2:87116824-87116843 Msa1086080:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + chr7_2:87116844-87116863 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + chr7_2:87116845-87116864 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - chr7_2:87116873-87116892 Msa1086080:intron 55.0%
GCTGCTTCTGTTATCGCTGC+TGG - chr7_2:87115133-87115152 Msa1086080:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG - chr7_2:87115166-87115185 Msa1086080:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG + chr7_2:87115187-87115206 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG - chr7_2:87115190-87115209 Msa1086080:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG - chr7_2:87115206-87115225 Msa1086080:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG - chr7_2:87115222-87115241 Msa1086080:CDS 55.0%
TGAACAGCTGGAGAAAGCCC+GGG - chr7_2:87116824-87116843 Msa1086080:intron 55.0%
TACTTTCCTTAAGCGGGCCC+GGG + chr7_2:87116844-87116863 None:intergenic 55.0%
CTACTTTCCTTAAGCGGGCC+CGG + chr7_2:87116845-87116864 None:intergenic 55.0%
! GCGGATCGGTTTCGAGTGAA+TGG - chr7_2:87116873-87116892 Msa1086080:intron 55.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - chr7_2:87115160-87115179 Msa1086080:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - chr7_2:87115205-87115224 Msa1086080:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - chr7_2:87115946-87115965 Msa1086080:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + chr7_2:87115952-87115971 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - chr7_2:87116812-87116831 Msa1086080:intron 60.0%
! GCCGTCGGGCTTGCTTCTAT+TGG - chr7_2:87115160-87115179 Msa1086080:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG - chr7_2:87115205-87115224 Msa1086080:CDS 60.0%
TGGCCATCCGCCGGAAGTTT+CGG - chr7_2:87115946-87115965 Msa1086080:intron 60.0%
AACCCGAAACTTCCGGCGGA+TGG + chr7_2:87115952-87115971 None:intergenic 60.0%
GGAAGCAGCCGTTGAACAGC+TGG - chr7_2:87116812-87116831 Msa1086080:intron 60.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - chr7_2:87115145-87115164 Msa1086080:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - chr7_2:87115231-87115250 Msa1086080:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - chr7_2:87115947-87115966 Msa1086080:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - chr7_2:87116835-87116854 Msa1086080:intron 65.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG - chr7_2:87115145-87115164 Msa1086080:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG - chr7_2:87115231-87115250 Msa1086080:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG - chr7_2:87115947-87115966 Msa1086080:intron 65.0%
AGAAAGCCCGGGCCCGCTTA+AGG - chr7_2:87116835-87116854 Msa1086080:intron 65.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - chr7_2:87115146-87115165 Msa1086080:CDS 70.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG - chr7_2:87115146-87115165 Msa1086080:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87115115 87117154 87115115 ID=Msa1086080;Name=Msa1086080
chr7_2 mRNA 87115115 87117154 87115115 ID=Msa1086080-mRNA-1;Parent=Msa1086080;Name=Msa1086080-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|167
chr7_2 exon 87117004 87117154 87117004 ID=Msa1086080-mRNA-1:exon:23698;Parent=Msa1086080-mRNA-1
chr7_2 exon 87115115 87115467 87115115 ID=Msa1086080-mRNA-1:exon:23697;Parent=Msa1086080-mRNA-1
chr7_2 CDS 87117004 87117154 87117004 ID=Msa1086080-mRNA-1:cds;Parent=Msa1086080-mRNA-1
chr7_2 CDS 87115115 87115467 87115115 ID=Msa1086080-mRNA-1:cds;Parent=Msa1086080-mRNA-1
Gene Sequence

>Msa1086080

ATGGATCCACTGATTTCTGCTGCTTCTGTTATCGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCAGGGCAAGCTGTAGAAGGGATTGCGCGACAACCGGAAGCAGAGGACAAAATAAGGGAAGAACTACGGGAAGCAGCCGTTGAACAGCTGGAGAAAGCCCGGGCCCGCTTAAGGAAAGTAGAAACGGAAGCGGATCGGTTTCGAGTGAATGGTTATTCCGAGATAGAACGAGAAAAATTGAATTTAATTAATTCAATTTATACAACTTTGGAACAATTCGAAAATTACAAAAATGAAACGATTCATTTTGAACAACAAAGGGCGATTAATCAAGTGCAACAGAGGGTTTTACAACAAGCATTACAAGGAGCTCTGGGAACTCTGAATAGTTGCTTAAACAACGAGTTACATTTACGTACGATCGGTGCTAATATTGATATGTTTGGGGCGATGAAAGAAAAAAAGAACTGA

Protein sequence

>Msa1086080

MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIREELREAAVEQLEKARARLRKVETEADRFRVNGYSEIEREKLNLINSIYTTLEQFENYKNETIHFEQQRAINQVQQRVLQQALQGALGTLNSCLNNELHLRTIGANIDMFGAMKEKKN*