AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0687320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687320 MtrunA17_Chr4g0037681 98.655 223 3 0 18 240 1 223 1.17e-168 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0687320 AT3G19900.1 58.009 231 79 4 18 240 2 222 7.06e-80 239
Msa0687320 AT3G19900.2 44.242 165 74 4 18 174 2 156 7.11e-31 112

Find 101 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAACTTCTCTTCAAATT+AGG 0.085912 4_4:+52142550 Msa0687320:three_prime_UTR
TCAAGAAAGTATTAAATATT+TGG 0.129023 4_4:-52139408 None:intergenic
ATAAACTTCTCTTCAAATTA+GGG 0.209289 4_4:+52142551 Msa0687320:three_prime_UTR
TTACAGTAGTGGTGTAAATT+TGG 0.222566 4_4:+52142493 Msa0687320:three_prime_UTR
ACTCTTATCAGGAACAAATA+TGG 0.244535 4_4:+52141094 Msa0687320:CDS
CATGTCCTACTTTCTCTATC+TGG 0.266872 4_4:+52139694 Msa0687320:five_prime_UTR
TTGACCTTGCTACTCTTATC+AGG 0.271521 4_4:+52141083 Msa0687320:CDS
ATTTATGTTGAGCAACATTA+AGG 0.318243 4_4:-52139909 None:intergenic
GGGGAGCTGTTTCACATATT+CGG 0.324568 4_4:+52141988 Msa0687320:CDS
GATTTATTATACGTTTATAC+TGG 0.325770 4_4:+52142372 Msa0687320:three_prime_UTR
ACTAGACACGTATGATTATA+AGG 0.326630 4_4:-52142725 None:intergenic
GTCACTATCATCTGAATCAT+AGG 0.333924 4_4:-52139995 None:intergenic
TGACAAAGGAAGTATTAATA+AGG 0.343907 4_4:+52139843 Msa0687320:CDS
CAGTACAGTGAGTGACAATA+TGG 0.345555 4_4:+52139969 Msa0687320:CDS
TGCAAACTCGTTAAAATGTT+GGG 0.348396 4_4:+52141968 Msa0687320:CDS
AGTTGTATGACATGGTAAAA+AGG 0.351774 4_4:-52139585 None:intergenic
TATAAATCATTGACTGAAAT+CGG 0.366788 4_4:-52139232 None:intergenic
TGTAAACAAACAGAAGAAAT+AGG 0.375195 4_4:-52142475 None:intergenic
AACTAACCTTCTTAATCAAC+TGG 0.375297 4_4:-52141132 None:intergenic
ATTAAGGAAGTCTAATCCTT+TGG 0.378502 4_4:-52139893 None:intergenic
TGGTTGGATGGAAAACTATA+TGG 0.379664 4_4:+52142685 Msa0687320:three_prime_UTR
TAATTTATGCTAGGAATTCA+TGG 0.383065 4_4:+52141323 Msa0687320:intron
TGGTTGGCCTCTAAGAATTC+AGG 0.385634 4_4:+52139813 Msa0687320:CDS
ATTTCAATAGAAATGTTAGA+AGG 0.387794 4_4:-52142417 None:intergenic
AGTCCATTAGTTCTGACTTA+AGG 0.397636 4_4:+52139348 Msa0687320:five_prime_UTR
AGTCCTTAAGTCAGAACTAA+TGG 0.402928 4_4:-52139351 None:intergenic
TTAAAATTCAGTTACAAAAG+TGG 0.404631 4_4:+52139612 Msa0687320:five_prime_UTR
TTGACAGCTGACTGTGTAAC+TGG 0.406487 4_4:+52142665 Msa0687320:three_prime_UTR
CATTGTGTTATCCTATTACT+CGG 0.413346 4_4:+52142585 Msa0687320:three_prime_UTR
TATCCGGATTCCTTGCAGTC+GGG 0.415497 4_4:+52139131 Msa0687320:five_prime_UTR
TTTCTATTGAAATCACTTCA+AGG 0.415900 4_4:+52142427 Msa0687320:three_prime_UTR
CTTCTGTTTGTTTACAGTAG+TGG 0.417837 4_4:+52142482 Msa0687320:three_prime_UTR
CTCTTATCAGGAACAAATAT+GGG 0.420619 4_4:+52141095 Msa0687320:CDS
TTATTAATACTTCCTTTGTC+AGG 0.425395 4_4:-52139841 None:intergenic
AATGGTCTGTTTATCCTATC+CGG 0.425776 4_4:+52139115 Msa0687320:five_prime_UTR
TCCTTGCAGTCGGGGTTAGT+TGG 0.428690 4_4:+52139140 Msa0687320:five_prime_UTR
TTGCAAACTCGTTAAAATGT+TGG 0.438360 4_4:+52141967 Msa0687320:CDS
TAAAATTCAGTTACAAAAGT+GGG 0.439657 4_4:+52139613 Msa0687320:five_prime_UTR
CATATTGTCACTCACTGTAC+TGG 0.450902 4_4:-52139968 None:intergenic
TGATGTCCAGTTGATTAAGA+AGG 0.453415 4_4:+52141126 Msa0687320:CDS
ACAGATGATTCAAGGTTTAG+TGG 0.456616 4_4:+52141058 Msa0687320:CDS
CGAAAGAACGACCTCGGATA+GGG 0.464263 4_4:+52142027 Msa0687320:CDS
TAAGTCAGAACTAATGGACT+TGG 0.473513 4_4:-52139345 None:intergenic
TTTATAGATATGGACGAGTC+CGG 0.477851 4_4:+52142237 Msa0687320:CDS
GTCGTTCTTTCGACTTTGCT+AGG 0.484164 4_4:-52142016 None:intergenic
GGATGATCCTGAATTCTTAG+AGG 0.485445 4_4:-52139820 None:intergenic
TCGAAAGAACGACCTCGGAT+AGG 0.487536 4_4:+52142026 Msa0687320:CDS
AATATATTCTTCTTCAGTCA+AGG 0.492732 4_4:-52141928 None:intergenic
AAGGAAGTCTAATCCTTTGG+AGG 0.499539 4_4:-52139890 None:intergenic
TAGTCGGTACAGATGATTCA+AGG 0.503976 4_4:+52141050 Msa0687320:CDS
AACCCCGACTGCAAGGAATC+CGG 0.512699 4_4:-52139134 None:intergenic
ATATATTCTTCTTCAGTCAA+GGG 0.512865 4_4:-52141927 None:intergenic
ATGATCAGGTAAATAGTGAC+AGG 0.533504 4_4:+52141005 Msa0687320:CDS
TCACTATCATCTGAATCATA+GGG 0.536151 4_4:-52139994 None:intergenic
GTTCATGTTTATACTTGCAA+AGG 0.541555 4_4:-52142641 None:intergenic
GAAATACAATCTTGCGTGTG+TGG 0.542124 4_4:-52139472 None:intergenic
CCACTCGTTCGCACGTGCAC+CGG 0.543129 4_4:-52142256 None:intergenic
CTATCCGGATTCCTTGCAGT+CGG 0.543771 4_4:+52139130 Msa0687320:five_prime_UTR
TGTCCACCCACCAGTGTGGT+TGG 0.544450 4_4:+52139797 Msa0687320:CDS
TCATGGAGTCAGTATATTAG+AGG 0.548062 4_4:-52139312 None:intergenic
AATTTATGCTAGGAATTCAT+GGG 0.548556 4_4:+52141324 Msa0687320:intron
ACAAACAGAAGAAATAGGTC+AGG 0.549016 4_4:-52142470 None:intergenic
ATTGTGTTATCCTATTACTC+GGG 0.551596 4_4:+52142586 Msa0687320:three_prime_UTR
CCGGTGCACGTGCGAACGAG+TGG 0.551813 4_4:+52142256 Msa0687320:CDS
CAGAATAATGATGAAATCAA+AGG 0.553196 4_4:+52140030 Msa0687320:CDS
TGAACTGAAATTCATCTCAA+AGG 0.554787 4_4:+52142301 Msa0687320:three_prime_UTR
ATCCGGATTCCTTGCAGTCG+GGG 0.555813 4_4:+52139132 Msa0687320:five_prime_UTR
GAATGTCATGTGGAAGTACA+TGG 0.561058 4_4:+52141365 Msa0687320:CDS
GGATATCATTCTCCCTCCAA+AGG 0.564889 4_4:+52139877 Msa0687320:CDS
CAGCTGACTGTGTAACTGGT+TGG 0.565799 4_4:+52142669 Msa0687320:three_prime_UTR
AATCTTCAAATATTGATCGT+CGG 0.568829 4_4:+52139274 Msa0687320:intron
GACTTGGATTCATGTAGTCA+TGG 0.571439 4_4:-52139329 None:intergenic
AGTTTATTAGAAATTTAATG+TGG 0.571613 4_4:-52142535 None:intergenic
AATCATTGACTGAAATCGGA+TGG 0.573903 4_4:-52139228 None:intergenic
TAAACTTCTCTTCAAATTAG+GGG 0.576257 4_4:+52142552 Msa0687320:three_prime_UTR
TCCAACTAACCCCGACTGCA+AGG 0.576659 4_4:-52139141 None:intergenic
GCAAACTCGTTAAAATGTTG+GGG 0.580293 4_4:+52141969 Msa0687320:CDS
CATGTGGAAGTACATGGAGC+AGG 0.580471 4_4:+52141371 Msa0687320:CDS
GCCATACTGCCAGAAAATGT+AGG 0.581926 4_4:+52139935 Msa0687320:CDS
TTCTTAGAGGCCAACCACAC+TGG 0.581947 4_4:-52139807 None:intergenic
TATATTCTTCTTCAGTCAAG+GGG 0.582965 4_4:-52141926 None:intergenic
AGGAAGTCTAATCCTTTGGA+GGG 0.584257 4_4:-52139889 None:intergenic
AAAATTCAGTTACAAAAGTG+GGG 0.590683 4_4:+52139614 Msa0687320:five_prime_UTR
TGACTGTGTAACTGGTTGGA+TGG 0.609585 4_4:+52142673 Msa0687320:three_prime_UTR
ATTCAGGATCATCCTGACAA+AGG 0.610154 4_4:+52139829 Msa0687320:CDS
TCCACATGACATTCATAGCA+AGG 0.612755 4_4:-52141356 None:intergenic
CGACTGCAAGGAATCCGGAT+AGG 0.613759 4_4:-52139129 None:intergenic
GAAAGTCTCGAGAAAATAGT+CGG 0.613761 4_4:+52141034 Msa0687320:CDS
TTAAAACTAGTTGTATGACA+TGG 0.615637 4_4:-52139593 None:intergenic
TTAGAGGCCAACCACACTGG+TGG 0.619099 4_4:-52139804 None:intergenic
TGTTCCTGATAAGAGTAGCA+AGG 0.634017 4_4:-52141087 None:intergenic
AGGCCAACCACACTGGTGGG+TGG 0.635187 4_4:-52139800 None:intergenic
ACTGAAATTCATCTCAAAGG+TGG 0.636102 4_4:+52142304 Msa0687320:three_prime_UTR
TAGAGGCCAACCACACTGGT+GGG 0.636716 4_4:-52139803 None:intergenic
AGAACGACCTCGGATAGGGA+AGG 0.655521 4_4:+52142031 Msa0687320:CDS
CAAAGTCGAAAGAACGACCT+CGG 0.659433 4_4:+52142021 Msa0687320:CDS
AATCTTACCTTCCCTATCCG+AGG 0.669322 4_4:-52142038 None:intergenic
TCCTTGCTATGAATGTCATG+TGG 0.672616 4_4:+52141355 Msa0687320:CDS
ATTCAGTTACAAAAGTGGGG+TGG 0.679256 4_4:+52139617 Msa0687320:five_prime_UTR
ATTATGTCCACCCACCAGTG+TGG 0.725293 4_4:+52139793 Msa0687320:CDS
TTAAATATTTGGATTCCGCG+CGG 0.743317 4_4:-52139397 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAGAAAGTATTAAATATT+TGG - chr4_4:52139411-52139430 None:intergenic 15.0%
!!! TTCTACTTTTAATTGTTTAT+GGG + chr4_4:52140272-52140291 Msa0687320:intron 15.0%
!!! TTTTTTTTAGAAAAATGATC+AGG + chr4_4:52140991-52141010 Msa0687320:intron 15.0%
!! ATATCATATGTAAATAGATT+GGG + chr4_4:52142077-52142096 Msa0687320:intron 15.0%
!! AGTTTATTAGAAATTTAATG+TGG - chr4_4:52142538-52142557 None:intergenic 15.0%
!!! TATAAATCATTGACTGAAAT+CGG - chr4_4:52139235-52139254 None:intergenic 20.0%
!! TTAAAATTCAGTTACAAAAG+TGG + chr4_4:52139612-52139631 Msa0687320:five_prime_UTR 20.0%
!! TAAAATTCAGTTACAAAAGT+GGG + chr4_4:52139613-52139632 Msa0687320:five_prime_UTR 20.0%
!!! TATATTGATTTTTGTTACGA+AGG + chr4_4:52140140-52140159 Msa0687320:intron 20.0%
!! TAGAAATTCTTTGTAAGAAA+TGG + chr4_4:52140244-52140263 Msa0687320:intron 20.0%
!!! GTTCTACTTTTAATTGTTTA+TGG + chr4_4:52140271-52140290 Msa0687320:intron 20.0%
!!! TCTAAGATACAACATAAAAA+AGG + chr4_4:52140466-52140485 Msa0687320:intron 20.0%
!! AATCAAGAGAATATATGTAA+AGG - chr4_4:52140658-52140677 None:intergenic 20.0%
!! GAGAAAAAAGCAATAAAAAA+GGG - chr4_4:52141241-52141260 None:intergenic 20.0%
!! AGAGAAAAAAGCAATAAAAA+AGG - chr4_4:52141242-52141261 None:intergenic 20.0%
!! ATTATGTAACAGCAAAATTA+AGG - chr4_4:52141307-52141326 None:intergenic 20.0%
!! AGACATTAAGATAAAAACAA+AGG + chr4_4:52141482-52141501 Msa0687320:intron 20.0%
!! GACATTAAGATAAAAACAAA+GGG + chr4_4:52141483-52141502 Msa0687320:intron 20.0%
!! CATATCATATGTAAATAGAT+TGG + chr4_4:52142076-52142095 Msa0687320:intron 20.0%
!! GATTTATTATACGTTTATAC+TGG + chr4_4:52142372-52142391 Msa0687320:three_prime_UTR 20.0%
!! ATTTCAATAGAAATGTTAGA+AGG - chr4_4:52142420-52142439 None:intergenic 20.0%
!! AATAAACTTCTCTTCAAATT+AGG + chr4_4:52142550-52142569 Msa0687320:three_prime_UTR 20.0%
!! ATAAACTTCTCTTCAAATTA+GGG + chr4_4:52142551-52142570 Msa0687320:three_prime_UTR 20.0%
! AATCTTCAAATATTGATCGT+CGG + chr4_4:52139274-52139293 Msa0687320:intron 25.0%
! TGTGGATAAAAAACAAATTG+GGG - chr4_4:52139457-52139476 None:intergenic 25.0%
! GTGTGGATAAAAAACAAATT+GGG - chr4_4:52139458-52139477 None:intergenic 25.0%
! TGTGTGGATAAAAAACAAAT+TGG - chr4_4:52139459-52139478 None:intergenic 25.0%
! TTAAAACTAGTTGTATGACA+TGG - chr4_4:52139596-52139615 None:intergenic 25.0%
! AAAATTCAGTTACAAAAGTG+GGG + chr4_4:52139614-52139633 Msa0687320:five_prime_UTR 25.0%
!!! TTTCTCTATCTGGTTTTTTT+GGG + chr4_4:52139704-52139723 Msa0687320:five_prime_UTR 25.0%
! TTATTAATACTTCCTTTGTC+AGG - chr4_4:52139844-52139863 None:intergenic 25.0%
!!! TGACAAAGGAAGTATTAATA+AGG + chr4_4:52139843-52139862 Msa0687320:CDS 25.0%
!! ATTAATAAGGCTCAATTTTC+AGG + chr4_4:52139856-52139875 Msa0687320:CDS 25.0%
! ATTTATGTTGAGCAACATTA+AGG - chr4_4:52139912-52139931 None:intergenic 25.0%
! CAGAATAATGATGAAATCAA+AGG + chr4_4:52140030-52140049 Msa0687320:CDS 25.0%
! AGAAATGCTAGAATAATATG+CGG + chr4_4:52140172-52140191 Msa0687320:intron 25.0%
! CCAAAATTACATCTAATGTA+GGG - chr4_4:52140382-52140401 None:intergenic 25.0%
! GTGAGATGATAAAATATGTT+TGG - chr4_4:52140504-52140523 None:intergenic 25.0%
! AATATATATTATTGCTTCGC+CGG + chr4_4:52140533-52140552 Msa0687320:intron 25.0%
! GATCTATTAACATACATTTC+CGG - chr4_4:52140555-52140574 None:intergenic 25.0%
! TATGTTAATAGATCTCAAGA+TGG + chr4_4:52140561-52140580 Msa0687320:intron 25.0%
! AACTAAAAACAAGAAGATAG+AGG - chr4_4:52140781-52140800 None:intergenic 25.0%
! TTTGCCAAAACATATGATTA+AGG - chr4_4:52140851-52140870 None:intergenic 25.0%
! AAGGTAAATATAAGAAATGC+AGG - chr4_4:52141203-52141222 None:intergenic 25.0%
! TAATTTATGCTAGGAATTCA+TGG + chr4_4:52141323-52141342 Msa0687320:intron 25.0%
! AATTTATGCTAGGAATTCAT+GGG + chr4_4:52141324-52141343 Msa0687320:intron 25.0%
! AGAACAGAAGAAAAAACAAA+AGG + chr4_4:52141724-52141743 Msa0687320:intron 25.0%
! TGTTTGTCAATTTGTGAAAT+GGG - chr4_4:52141756-52141775 None:intergenic 25.0%
! TTGTTTGTCAATTTGTGAAA+TGG - chr4_4:52141757-52141776 None:intergenic 25.0%
! CTTTGTATAAAGTAGTATCT+CGG + chr4_4:52141778-52141797 Msa0687320:intron 25.0%
! ACATAATCATTAGAAGCTTA+TGG + chr4_4:52141835-52141854 Msa0687320:intron 25.0%
! ATATATTCTTCTTCAGTCAA+GGG - chr4_4:52141930-52141949 None:intergenic 25.0%
! AATATATTCTTCTTCAGTCA+AGG - chr4_4:52141931-52141950 None:intergenic 25.0%
!! CTGAAGAAGAATATATTTTG+AGG + chr4_4:52141934-52141953 Msa0687320:CDS 25.0%
! CAAATAACAAGAAGTTAGAA+GGG - chr4_4:52142199-52142218 None:intergenic 25.0%
!! TGTGAGCATTTTTATAGATA+TGG + chr4_4:52142227-52142246 Msa0687320:CDS 25.0%
! TTTCTATTGAAATCACTTCA+AGG + chr4_4:52142427-52142446 Msa0687320:three_prime_UTR 25.0%
! TGTAAACAAACAGAAGAAAT+AGG - chr4_4:52142478-52142497 None:intergenic 25.0%
! TAAACTTCTCTTCAAATTAG+GGG + chr4_4:52142552-52142571 Msa0687320:three_prime_UTR 25.0%
CGTTGAATGAAAAACAGAAA+TGG + chr4_4:52139166-52139185 Msa0687320:five_prime_UTR 30.0%
GTGGATAAAAAACAAATTGG+GGG - chr4_4:52139456-52139475 None:intergenic 30.0%
AGTTGTATGACATGGTAAAA+AGG - chr4_4:52139588-52139607 None:intergenic 30.0%
AAAAACCAGATAGAGAAAGT+AGG - chr4_4:52139702-52139721 None:intergenic 30.0%
!!! CTTTCTCTATCTGGTTTTTT+TGG + chr4_4:52139703-52139722 Msa0687320:five_prime_UTR 30.0%
!!! TTTTTTATGAAACTGAGTGC+AGG + chr4_4:52139757-52139776 Msa0687320:CDS 30.0%
ATTAAGGAAGTCTAATCCTT+TGG - chr4_4:52139896-52139915 None:intergenic 30.0%
! AAAAATAGGCCTACATTTTC+TGG - chr4_4:52139947-52139966 None:intergenic 30.0%
TCACTATCATCTGAATCATA+GGG - chr4_4:52139997-52140016 None:intergenic 30.0%
! CCCTACATTAGATGTAATTT+TGG + chr4_4:52140379-52140398 Msa0687320:intron 30.0%
GCCAAAATTACATCTAATGT+AGG - chr4_4:52140383-52140402 None:intergenic 30.0%
ATGTGAAATCTTAGTTTCGA+TGG + chr4_4:52140710-52140729 Msa0687320:intron 30.0%
ATGTTTGAGCAAAATCTATC+TGG + chr4_4:52140822-52140841 Msa0687320:intron 30.0%
! GCTTCCTTAATCATATGTTT+TGG + chr4_4:52140844-52140863 Msa0687320:intron 30.0%
! ATGTTGAAGCTCTTTTCAAA+TGG + chr4_4:52140880-52140899 Msa0687320:intron 30.0%
! CTCTTTTCAAATGGAAATAC+AGG + chr4_4:52140889-52140908 Msa0687320:intron 30.0%
ACTCTTATCAGGAACAAATA+TGG + chr4_4:52141094-52141113 Msa0687320:CDS 30.0%
CTCTTATCAGGAACAAATAT+GGG + chr4_4:52141095-52141114 Msa0687320:CDS 30.0%
AACTAACCTTCTTAATCAAC+TGG - chr4_4:52141135-52141154 None:intergenic 30.0%
GCTGTTACATAATTTATGCT+AGG + chr4_4:52141314-52141333 Msa0687320:intron 30.0%
CTGACTCTTAGTTAGAATAA+TGG + chr4_4:52141561-52141580 Msa0687320:intron 30.0%
AATTGGTCAAGAATGGTTAT+TGG - chr4_4:52141607-52141626 None:intergenic 30.0%
TGACAGAATTCCATTAGAAT+TGG - chr4_4:52141624-52141643 None:intergenic 30.0%
ATCAAAGTGAAAACAGCTTA+TGG + chr4_4:52141669-52141688 Msa0687320:intron 30.0%
! CAGCTTATGGATTTTTAATC+TGG + chr4_4:52141682-52141701 Msa0687320:intron 30.0%
GAAGAAAAAACAAAAGGCAA+AGG + chr4_4:52141730-52141749 Msa0687320:intron 30.0%
TAATAGTACAACTAAGTGTC+TGG - chr4_4:52141812-52141831 None:intergenic 30.0%
TTATACAAGCATTTCCATAG+TGG - chr4_4:52141863-52141882 None:intergenic 30.0%
TATATTCTTCTTCAGTCAAG+GGG - chr4_4:52141929-52141948 None:intergenic 30.0%
TTGCAAACTCGTTAAAATGT+TGG + chr4_4:52141967-52141986 Msa0687320:CDS 30.0%
TGCAAACTCGTTAAAATGTT+GGG + chr4_4:52141968-52141987 Msa0687320:CDS 30.0%
ATTCTGCCAATATTGTATGA+AGG - chr4_4:52142106-52142125 None:intergenic 30.0%
! TTGTAAACTTTTGCTGATGT+TGG - chr4_4:52142131-52142150 None:intergenic 30.0%
CCAAATAACAAGAAGTTAGA+AGG - chr4_4:52142200-52142219 None:intergenic 30.0%
!! CCTTCTAACTTCTTGTTATT+TGG + chr4_4:52142197-52142216 Msa0687320:intron 30.0%
TGAACTGAAATTCATCTCAA+AGG + chr4_4:52142301-52142320 Msa0687320:three_prime_UTR 30.0%
TTACAGTAGTGGTGTAAATT+TGG + chr4_4:52142493-52142512 Msa0687320:three_prime_UTR 30.0%
CATTGTGTTATCCTATTACT+CGG + chr4_4:52142585-52142604 Msa0687320:three_prime_UTR 30.0%
ATTGTGTTATCCTATTACTC+GGG + chr4_4:52142586-52142605 Msa0687320:three_prime_UTR 30.0%
GTTCATGTTTATACTTGCAA+AGG - chr4_4:52142644-52142663 None:intergenic 30.0%
ACTAGACACGTATGATTATA+AGG - chr4_4:52142728-52142747 None:intergenic 30.0%
AATGGTCTGTTTATCCTATC+CGG + chr4_4:52139115-52139134 Msa0687320:five_prime_UTR 35.0%
! AATCATTGACTGAAATCGGA+TGG - chr4_4:52139231-52139250 None:intergenic 35.0%
TCATGGAGTCAGTATATTAG+AGG - chr4_4:52139315-52139334 None:intergenic 35.0%
!! TAAGTCAGAACTAATGGACT+TGG - chr4_4:52139348-52139367 None:intergenic 35.0%
!! AGTCCATTAGTTCTGACTTA+AGG + chr4_4:52139348-52139367 Msa0687320:five_prime_UTR 35.0%
AGTCCTTAAGTCAGAACTAA+TGG - chr4_4:52139354-52139373 None:intergenic 35.0%
TTAAATATTTGGATTCCGCG+CGG - chr4_4:52139400-52139419 None:intergenic 35.0%
AATTGGGGGTTTGAAAAGTA+GGG - chr4_4:52139442-52139461 None:intergenic 35.0%
AAATTGGGGGTTTGAAAAGT+AGG - chr4_4:52139443-52139462 None:intergenic 35.0%
CTCACTGTACTGGAAAAAAT+AGG - chr4_4:52139961-52139980 None:intergenic 35.0%
GTCACTATCATCTGAATCAT+AGG - chr4_4:52139998-52140017 None:intergenic 35.0%
TACATGCAGTCATGCAAAAA+GGG - chr4_4:52140077-52140096 None:intergenic 35.0%
TTACATGCAGTCATGCAAAA+AGG - chr4_4:52140078-52140097 None:intergenic 35.0%
ATGCTAGAATAATATGCGGT+AGG + chr4_4:52140176-52140195 Msa0687320:intron 35.0%
!! AATTGTTTATGGGAGTGTCT+CGG + chr4_4:52140282-52140301 Msa0687320:intron 35.0%
CACCACTTATAATCGTCTTT+CGG - chr4_4:52140405-52140424 None:intergenic 35.0%
ATGATCAGGTAAATAGTGAC+AGG + chr4_4:52141005-52141024 Msa0687320:CDS 35.0%
GAAAGTCTCGAGAAAATAGT+CGG + chr4_4:52141034-52141053 Msa0687320:CDS 35.0%
ACAGATGATTCAAGGTTTAG+TGG + chr4_4:52141058-52141077 Msa0687320:CDS 35.0%
TGATGTCCAGTTGATTAAGA+AGG + chr4_4:52141126-52141145 Msa0687320:CDS 35.0%
!! GAAGGTTAGTTTCTTACAAG+TGG + chr4_4:52141144-52141163 Msa0687320:intron 35.0%
GGTTATTGGATAAGTCAAAG+TGG - chr4_4:52141593-52141612 None:intergenic 35.0%
CCATTAGAATTGGTCAAGAA+TGG - chr4_4:52141614-52141633 None:intergenic 35.0%
CCATTCTTGACCAATTCTAA+TGG + chr4_4:52141611-52141630 Msa0687320:intron 35.0%
!! TACAACTAAGTGTCTGGTTT+TGG - chr4_4:52141806-52141825 None:intergenic 35.0%
GCAAACTCGTTAAAATGTTG+GGG + chr4_4:52141969-52141988 Msa0687320:CDS 35.0%
!! AACTTCTTGTTATTTGGTGC+AGG + chr4_4:52142203-52142222 Msa0687320:intron 35.0%
TTTATAGATATGGACGAGTC+CGG + chr4_4:52142237-52142256 Msa0687320:CDS 35.0%
ACTGAAATTCATCTCAAAGG+TGG + chr4_4:52142304-52142323 Msa0687320:three_prime_UTR 35.0%
CCAAGAAGTTCCCAAAAAAA+GGG - chr4_4:52142351-52142370 None:intergenic 35.0%
!!! CCTTTTTTTGGGAACTTCTT+GGG + chr4_4:52142349-52142368 Msa0687320:three_prime_UTR 35.0%
!!! CTTTTTTTGGGAACTTCTTG+GGG + chr4_4:52142350-52142369 Msa0687320:three_prime_UTR 35.0%
ACAAACAGAAGAAATAGGTC+AGG - chr4_4:52142473-52142492 None:intergenic 35.0%
CTTCTGTTTGTTTACAGTAG+TGG + chr4_4:52142482-52142501 Msa0687320:three_prime_UTR 35.0%
! AAGTGATTTTCCCGAGTAAT+AGG - chr4_4:52142599-52142618 None:intergenic 35.0%
TGGTTGGATGGAAAACTATA+TGG + chr4_4:52142685-52142704 Msa0687320:three_prime_UTR 35.0%
GACTTGGATTCATGTAGTCA+TGG - chr4_4:52139332-52139351 None:intergenic 40.0%
GAAATACAATCTTGCGTGTG+TGG - chr4_4:52139475-52139494 None:intergenic 40.0%
ATTCAGTTACAAAAGTGGGG+TGG + chr4_4:52139617-52139636 Msa0687320:five_prime_UTR 40.0%
CATGTCCTACTTTCTCTATC+TGG + chr4_4:52139694-52139713 Msa0687320:five_prime_UTR 40.0%
GGATGATCCTGAATTCTTAG+AGG - chr4_4:52139823-52139842 None:intergenic 40.0%
ATTCAGGATCATCCTGACAA+AGG + chr4_4:52139829-52139848 Msa0687320:CDS 40.0%
AGGAAGTCTAATCCTTTGGA+GGG - chr4_4:52139892-52139911 None:intergenic 40.0%
AAGGAAGTCTAATCCTTTGG+AGG - chr4_4:52139893-52139912 None:intergenic 40.0%
CATATTGTCACTCACTGTAC+TGG - chr4_4:52139971-52139990 None:intergenic 40.0%
CAGTACAGTGAGTGACAATA+TGG + chr4_4:52139969-52139988 Msa0687320:CDS 40.0%
CGAAAGACGATTATAAGTGG+TGG + chr4_4:52140403-52140422 Msa0687320:intron 40.0%
TACGTTCCAAGACAGATTTG+TGG + chr4_4:52140438-52140457 Msa0687320:intron 40.0%
ACGTTCCAAGACAGATTTGT+GGG + chr4_4:52140439-52140458 Msa0687320:intron 40.0%
AACTTCCCACAAATCTGTCT+TGG - chr4_4:52140447-52140466 None:intergenic 40.0%
AGATCTCAAGATGGTGAACT+AGG + chr4_4:52140570-52140589 Msa0687320:intron 40.0%
TTCTTCCTGCAATGATGAAC+TGG + chr4_4:52140683-52140702 Msa0687320:intron 40.0%
! CAGATTGAGAGCACATCAAT+GGG - chr4_4:52140952-52140971 None:intergenic 40.0%
TAGTCGGTACAGATGATTCA+AGG + chr4_4:52141050-52141069 Msa0687320:CDS 40.0%
TTGACCTTGCTACTCTTATC+AGG + chr4_4:52141083-52141102 Msa0687320:CDS 40.0%
TGTTCCTGATAAGAGTAGCA+AGG - chr4_4:52141090-52141109 None:intergenic 40.0%
AGGGAGAGAAATTGAAGAGA+AGG - chr4_4:52141222-52141241 None:intergenic 40.0%
GCAGAACTTAACACATCGTT+TGG - chr4_4:52141279-52141298 None:intergenic 40.0%
! TCCTTGCTATGAATGTCATG+TGG + chr4_4:52141355-52141374 Msa0687320:CDS 40.0%
TCCACATGACATTCATAGCA+AGG - chr4_4:52141359-52141378 None:intergenic 40.0%
! GAATGTCATGTGGAAGTACA+TGG + chr4_4:52141365-52141384 Msa0687320:CDS 40.0%
TTGGATAAGTCAAAGTGGTG+AGG - chr4_4:52141588-52141607 None:intergenic 40.0%
AGAAGCTTATGGTACCACTA+TGG + chr4_4:52141846-52141865 Msa0687320:intron 40.0%
GGGACACCTTCATACAATAT+TGG + chr4_4:52142097-52142116 Msa0687320:intron 40.0%
AGAAGTTCCCAAAAAAAGGG+TGG - chr4_4:52142348-52142367 None:intergenic 40.0%
!!! CCCTTTTTTTGGGAACTTCT+TGG + chr4_4:52142348-52142367 Msa0687320:three_prime_UTR 40.0%
CCCAAGAAGTTCCCAAAAAA+AGG - chr4_4:52142352-52142371 None:intergenic 40.0%
! GTGTGATTTTTCTAACCGCG+CGG + chr4_4:52139382-52139401 Msa0687320:five_prime_UTR 45.0%
!! TGGTTGGCCTCTAAGAATTC+AGG + chr4_4:52139813-52139832 Msa0687320:CDS 45.0%
GGATATCATTCTCCCTCCAA+AGG + chr4_4:52139877-52139896 Msa0687320:CDS 45.0%
GCCATACTGCCAGAAAATGT+AGG + chr4_4:52139935-52139954 Msa0687320:CDS 45.0%
!! GCCTACATTTTCTGGCAGTA+TGG - chr4_4:52139939-52139958 None:intergenic 45.0%
GGCCGAAAGACGATTATAAG+TGG + chr4_4:52140400-52140419 Msa0687320:intron 45.0%
CTGTCTTGGAACGTAAGATG+AGG - chr4_4:52140433-52140452 None:intergenic 45.0%
TCCTGCAATGATGAACTGGT+TGG + chr4_4:52140687-52140706 Msa0687320:intron 45.0%
TCCAACCAGTTCATCATTGC+AGG - chr4_4:52140691-52140710 None:intergenic 45.0%
! CCAGATTGAGAGCACATCAA+TGG - chr4_4:52140953-52140972 None:intergenic 45.0%
CCATTGATGTGCTCTCAATC+TGG + chr4_4:52140950-52140969 Msa0687320:intron 45.0%
! GGGGAGCTGTTTCACATATT+CGG + chr4_4:52141988-52142007 Msa0687320:CDS 45.0%
GTCGTTCTTTCGACTTTGCT+AGG - chr4_4:52142019-52142038 None:intergenic 45.0%
CAAAGTCGAAAGAACGACCT+CGG + chr4_4:52142021-52142040 Msa0687320:CDS 45.0%
AATCTTACCTTCCCTATCCG+AGG - chr4_4:52142041-52142060 None:intergenic 45.0%
!!! AGCAGCACCACCCTTTTTTT+GGG + chr4_4:52142338-52142357 Msa0687320:three_prime_UTR 45.0%
TTGACAGCTGACTGTGTAAC+TGG + chr4_4:52142665-52142684 Msa0687320:three_prime_UTR 45.0%
TGACTGTGTAACTGGTTGGA+TGG + chr4_4:52142673-52142692 Msa0687320:three_prime_UTR 45.0%
CTATCCGGATTCCTTGCAGT+CGG + chr4_4:52139130-52139149 Msa0687320:five_prime_UTR 50.0%
TATCCGGATTCCTTGCAGTC+GGG + chr4_4:52139131-52139150 Msa0687320:five_prime_UTR 50.0%
ATTATGTCCACCCACCAGTG+TGG + chr4_4:52139793-52139812 Msa0687320:CDS 50.0%
TTCTTAGAGGCCAACCACAC+TGG - chr4_4:52139810-52139829 None:intergenic 50.0%
! CATGTGGAAGTACATGGAGC+AGG + chr4_4:52141371-52141390 Msa0687320:CDS 50.0%
TCGAAAGAACGACCTCGGAT+AGG + chr4_4:52142026-52142045 Msa0687320:CDS 50.0%
CGAAAGAACGACCTCGGATA+GGG + chr4_4:52142027-52142046 Msa0687320:CDS 50.0%
!!! CAGCAGCACCACCCTTTTTT+TGG + chr4_4:52142337-52142356 Msa0687320:three_prime_UTR 50.0%
CAGCTGACTGTGTAACTGGT+TGG + chr4_4:52142669-52142688 Msa0687320:three_prime_UTR 50.0%
CGACTGCAAGGAATCCGGAT+AGG - chr4_4:52139132-52139151 None:intergenic 55.0%
ATCCGGATTCCTTGCAGTCG+GGG + chr4_4:52139132-52139151 Msa0687320:five_prime_UTR 55.0%
AACCCCGACTGCAAGGAATC+CGG - chr4_4:52139137-52139156 None:intergenic 55.0%
! TCCTTGCAGTCGGGGTTAGT+TGG + chr4_4:52139140-52139159 Msa0687320:five_prime_UTR 55.0%
TCCAACTAACCCCGACTGCA+AGG - chr4_4:52139144-52139163 None:intergenic 55.0%
TAGAGGCCAACCACACTGGT+GGG - chr4_4:52139806-52139825 None:intergenic 55.0%
TTAGAGGCCAACCACACTGG+TGG - chr4_4:52139807-52139826 None:intergenic 55.0%
!! GTTTATGGGAGTGTCTCGGC+AGG + chr4_4:52140286-52140305 Msa0687320:intron 55.0%
AGAACGACCTCGGATAGGGA+AGG + chr4_4:52142031-52142050 Msa0687320:CDS 55.0%
TGTCCACCCACCAGTGTGGT+TGG + chr4_4:52139797-52139816 Msa0687320:CDS 60.0%
AGGCCAACCACACTGGTGGG+TGG - chr4_4:52139803-52139822 None:intergenic 65.0%
CCACTCGTTCGCACGTGCAC+CGG - chr4_4:52142259-52142278 None:intergenic 65.0%
CCGGTGCACGTGCGAACGAG+TGG + chr4_4:52142256-52142275 Msa0687320:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 52139110 52142752 52139110 ID=Msa0687320;Name=Msa0687320
chr4_4 mRNA 52139110 52142752 52139110 ID=Msa0687320-mRNA-1;Parent=Msa0687320;Name=Msa0687320-mRNA-1;_AED=0.09;_eAED=0.09;_QI=588|1|1|1|0.8|0.66|6|462|240
chr4_4 exon 52139110 52139244 52139110 ID=Msa0687320-mRNA-1:exon:13574;Parent=Msa0687320-mRNA-1
chr4_4 exon 52139283 52140053 52139283 ID=Msa0687320-mRNA-1:exon:13575;Parent=Msa0687320-mRNA-1
chr4_4 exon 52141001 52141147 52141001 ID=Msa0687320-mRNA-1:exon:13576;Parent=Msa0687320-mRNA-1
chr4_4 exon 52141336 52141392 52141336 ID=Msa0687320-mRNA-1:exon:13577;Parent=Msa0687320-mRNA-1
chr4_4 exon 52141918 52142052 52141918 ID=Msa0687320-mRNA-1:exon:13578;Parent=Msa0687320-mRNA-1
chr4_4 exon 52142225 52142752 52142225 ID=Msa0687320-mRNA-1:exon:13579;Parent=Msa0687320-mRNA-1
chr4_4 five_prime_UTR 52139110 52139244 52139110 ID=Msa0687320-mRNA-1:five_prime_utr;Parent=Msa0687320-mRNA-1
chr4_4 five_prime_UTR 52139283 52139735 52139283 ID=Msa0687320-mRNA-1:five_prime_utr;Parent=Msa0687320-mRNA-1
chr4_4 CDS 52139736 52140053 52139736 ID=Msa0687320-mRNA-1:cds;Parent=Msa0687320-mRNA-1
chr4_4 CDS 52141001 52141147 52141001 ID=Msa0687320-mRNA-1:cds;Parent=Msa0687320-mRNA-1
chr4_4 CDS 52141336 52141392 52141336 ID=Msa0687320-mRNA-1:cds;Parent=Msa0687320-mRNA-1
chr4_4 CDS 52141918 52142052 52141918 ID=Msa0687320-mRNA-1:cds;Parent=Msa0687320-mRNA-1
chr4_4 CDS 52142225 52142290 52142225 ID=Msa0687320-mRNA-1:cds;Parent=Msa0687320-mRNA-1
chr4_4 three_prime_UTR 52142291 52142752 52142291 ID=Msa0687320-mRNA-1:three_prime_utr;Parent=Msa0687320-mRNA-1
Gene Sequence

>Msa0687320

ATGTTTTATACTTTCTTTGCATTTTTTATGAAACTGAGTGCAGGACACACAATGAACATTATGTCCACCCACCAGTGTGGTTGGCCTCTAAGAATTCAGGATCATCCTGACAAAGGAAGTATTAATAAGGCTCAATTTTCAGGATATCATTCTCCCTCCAAAGGATTAGACTTCCTTAATGTTGCTCAACATAAATGTTGCCATACTGCCAGAAAATGTAGGCCTATTTTTTCCAGTACAGTGAGTGACAATATGGATCCCTATGATTCAGATGATAGTGACAAGAACAAATCTCAGAATAATGATGAAATCAAAGGAAAAAATGATCAGGTAAATAGTGACAGGCTCAGAGAAAGTCTCGAGAAAATAGTCGGTACAGATGATTCAAGGTTTAGTGGATTTGACCTTGCTACTCTTATCAGGAACAAATATGGGAAATCTTATGATGTCCAGTTGATTAAGAAGGAATTCATGGGAAGAAATTTCCTTGCTATGAATGTCATGTGGAAGTACATGGAGCAGAGATCATTCCCCTTGACTGAAGAAGAATATATTTTGAGGCTCGATGATGTTGCAAACTCGTTAAAATGTTGGGGAGCTGTTTCACATATTCGGAACAGCCTAGCAAAGTCGAAAGAACGACCTCGGATAGGGAAGGCTGTGAGCATTTTTATAGATATGGACGAGTCCGGTGCACGTGCGAACGAGTGGATCTACAAGTAG

Protein sequence

>Msa0687320

MFYTFFAFFMKLSAGHTMNIMSTHQCGWPLRIQDHPDKGSINKAQFSGYHSPSKGLDFLNVAQHKCCHTARKCRPIFSSTVSDNMDPYDSDDSDKNKSQNNDEIKGKNDQVNSDRLRESLEKIVGTDDSRFSGFDLATLIRNKYGKSYDVQLIKKEFMGRNFLAMNVMWKYMEQRSFPLTEEEYILRLDDVANSLKCWGAVSHIRNSLAKSKERPRIGKAVSIFIDMDESGARANEWIYK*