AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0295840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0295840 MtrunA17_Chr2g0318131 94.851 369 13 3 1 366 1 366 0.0 680
Msa0295840 MtrunA17_Chr2g0324001 73.663 243 64 0 123 365 69 311 2.44e-137 396
Msa0295840 MtrunA17_Chr6g0465041 23.810 168 128 0 180 347 56 223 3.38e-15 74.7
Msa0295840 MtrunA17_Chr1g0187331 29.032 186 120 6 177 359 9 185 1.38e-14 72.0
Msa0295840 MtrunA17_Chr1g0207521 27.273 176 125 2 180 353 85 259 2.53e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0295840 AT1G52870.2 64.463 363 110 6 2 359 4 352 1.80e-163 465
Msa0295840 AT4G03410.2 74.597 248 62 1 121 368 72 318 3.88e-142 410
Msa0295840 AT4G03410.1 75.949 237 57 0 121 357 72 308 2.33e-140 404
Msa0295840 AT1G52870.1 59.688 320 106 7 2 316 4 305 7.18e-128 372
Msa0295840 AT5G43140.1 24.713 174 130 1 180 353 82 254 8.43e-14 71.6
Msa0295840 AT4G33905.1 26.111 180 128 2 180 359 86 260 1.12e-13 71.2
Msa0295840 AT2G14860.1 26.901 171 124 1 180 350 77 246 3.39e-13 69.7

Find 108 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATGATAGAGCTTATT+TGG 0.132143 2_3:+48620929 Msa0295840:CDS
CTAACATACATGAATTTCTT+AGG 0.138333 2_3:-48621935 None:intergenic
TTACTATTGATAGTGATTAT+TGG 0.193346 2_3:+48619250 Msa0295840:CDS
CGGTGCGCTGGACCTTAATT+TGG 0.229107 2_3:+48621847 Msa0295840:CDS
AGGTCAAAATTGTGTATATA+TGG 0.272639 2_3:+48622092 Msa0295840:three_prime_UTR
CGCTGGACCTTAATTTGGTT+TGG 0.284224 2_3:+48621852 Msa0295840:CDS
GCTAGTATTGTTCTTGTTGC+TGG 0.288636 2_3:+48619204 Msa0295840:CDS
CATCTGAGGTATGTGGCTTC+TGG 0.325314 2_3:+48621668 Msa0295840:CDS
GATAGAAAATATTATTATAA+TGG 0.328552 2_3:+48621813 Msa0295840:CDS
CAGTTGAGCAAAGACTTCTT+TGG 0.344032 2_3:+48620905 Msa0295840:CDS
TCTATGTCCAAACCAAATTA+AGG 0.351514 2_3:-48621859 None:intergenic
CTTGTTGGATTTGCTCTACA+TGG 0.353651 2_3:+48620393 Msa0295840:CDS
AATTCATTGAAAATATTGAT+TGG 0.360409 2_3:-48620671 None:intergenic
TAGGATTCATTCTGTTAAAC+AGG 0.364327 2_3:+48622072 Msa0295840:three_prime_UTR
ATAAACTTACGTTGAAAGTA+TGG 0.377879 2_3:-48620956 None:intergenic
ACGACGCAAGTGAATGGATT+TGG 0.380452 2_3:+48619066 Msa0295840:CDS
AAACTGCATGGTCGGCAGTT+TGG 0.384594 2_3:+48620603 Msa0295840:CDS
CTAAGAAATTCATGTATGTT+AGG 0.387434 2_3:+48621936 Msa0295840:CDS
ACACAACTGGTTAGCTTATG+AGG 0.392465 2_3:+48620130 Msa0295840:CDS
TTGTTTATTCCGTAGGAGAC+TGG 0.396989 2_3:+48620201 Msa0295840:CDS
CAAAGAAGTCTTTGCTCAAC+TGG 0.399250 2_3:-48620904 None:intergenic
TATTACAATGCAGTCGAGAT+AGG 0.404494 2_3:+48622053 Msa0295840:three_prime_UTR
TGAGAAATTCTCATCATTTG+TGG 0.410915 2_3:-48622159 None:intergenic
AATGATGAGAATTTCTCAAT+TGG 0.415255 2_3:+48622164 Msa0295840:three_prime_UTR
AGATATGATAGAGCTTATTT+GGG 0.418869 2_3:+48620930 Msa0295840:CDS
GAATTTCTCAATTGGCTGCT+TGG 0.420419 2_3:+48622172 Msa0295840:three_prime_UTR
TATGGTCTACCTCACAAAAC+TGG 0.429644 2_3:-48620437 None:intergenic
CTTCCCGAGTTCTTCGAGTT+GGG 0.430586 2_3:-48618747 None:intergenic
TGAACAATTACATTGTGTAA+TGG 0.437531 2_3:-48621982 None:intergenic
TCACTATCAAACCTTCTTGC+TGG 0.438486 2_3:-48618999 None:intergenic
GCTTCCCGAGTTCTTCGAGT+TGG 0.440297 2_3:-48618748 None:intergenic
AGTTGAGCAAAGACTTCTTT+GGG 0.441026 2_3:+48620906 Msa0295840:CDS
TTGCCAAGATGGTGATTAGT+GGG 0.445228 2_3:+48620177 Msa0295840:CDS
CGTGCACGGATGTTCAGATC+AGG 0.450132 2_3:+48620369 Msa0295840:CDS
TGATCGAAGGCAACTTTGAC+AGG 0.453007 2_3:-48620581 None:intergenic
TTTGCTCATCTAATAACTTA+CGG 0.455935 2_3:+48620874 Msa0295840:CDS
TTAGTGGAGAATCTTGATAC+TGG 0.460029 2_3:-48618886 None:intergenic
TAACATACATGAATTTCTTA+GGG 0.463410 2_3:-48621934 None:intergenic
AGCATTTACTATACAGTTGT+GGG 0.481625 2_3:+48620629 Msa0295840:CDS
TCAGAGATGACCGAGTTAGA+TGG 0.484429 2_3:+48622121 Msa0295840:three_prime_UTR
GCGACGACGACGCAAGTGAA+TGG 0.485519 2_3:+48619060 Msa0295840:CDS
TGAAGAGAATGTGGAGAGTG+TGG 0.488302 2_3:+48619155 Msa0295840:CDS
GATATGCACCTCTACACAAC+TGG 0.490397 2_3:+48620117 Msa0295840:CDS
AATGGATTTGGAGCGAATGA+AGG 0.492577 2_3:+48619078 Msa0295840:CDS
TCGAGTGCTTCGGGTTTGGT+TGG 0.494003 2_3:+48619123 Msa0295840:CDS
GAGAAATTCTCATCATTTGT+GGG 0.494268 2_3:-48622158 None:intergenic
TTTGCCAAGATGGTGATTAG+TGG 0.494763 2_3:+48620176 Msa0295840:CDS
TAAGTTATTAGATGAGCAAA+TGG 0.497633 2_3:-48620871 None:intergenic
GAATGAAGTTCACGGTGCGC+TGG 0.500228 2_3:+48621835 Msa0295840:CDS
GGAAGCTCTTAAGACAAATC+CGG 0.503288 2_3:+48620151 Msa0295840:CDS
AACCCCACTAATCACCATCT+TGG 0.505082 2_3:-48620180 None:intergenic
ATACAGCTACATCATCTCTC+TGG 0.506054 2_3:+48618642 None:intergenic
AGCTATTTCCTTACAAAGGA+TGG 0.507459 2_3:+48620549 Msa0295840:CDS
TGATTATTGCAGTGCTTCGA+AGG 0.509560 2_3:+48620324 Msa0295840:intron
ATGTTCAGATCAGGGCTTGT+TGG 0.511574 2_3:+48620378 Msa0295840:CDS
AACTCACCAACTCACTTCAA+TGG 0.515712 2_3:+48618774 Msa0295840:exon
AGTGGGGTTGTTTATTCCGT+AGG 0.516098 2_3:+48620194 Msa0295840:CDS
CAAAATTGTGTATATATGGA+TGG 0.520212 2_3:+48622096 Msa0295840:three_prime_UTR
GAAGGTTTGTTATCGTTGGA+AGG 0.524445 2_3:+48619096 Msa0295840:CDS
CAGCATTTACTATACAGTTG+TGG 0.531133 2_3:+48620628 Msa0295840:CDS
ACTACCCACCATCCTTTGTA+AGG 0.532543 2_3:-48620557 None:intergenic
GCACGATCAAACTCGAAAAG+AGG 0.532545 2_3:-48620351 None:intergenic
CTCACCCAACTCGAAGAACT+CGG 0.536502 2_3:+48618743 Msa0295840:five_prime_UTR
TTACATTGTGTAATGGCTAC+AGG 0.540618 2_3:-48621975 None:intergenic
TTATAATGGAATGAAGTTCA+CGG 0.545579 2_3:+48621827 Msa0295840:CDS
GATAGTGAGCCGTGTGGAGA+TGG 0.547654 2_3:+48619014 Msa0295840:CDS
CTTCGATCAAACTGCATGGT+CGG 0.558882 2_3:+48620595 Msa0295840:CDS
GAGGAAAGTGTGGTGAGGTA+CGG 0.563573 2_3:-48618812 None:intergenic
GAATGAAGGTTTGTTATCGT+TGG 0.563825 2_3:+48619092 Msa0295840:CDS
CTGTGCAATCCAGTCTCCTA+CGG 0.567009 2_3:-48620210 None:intergenic
AATATTACAGACCAGCAAGA+AGG 0.568875 2_3:+48618988 Msa0295840:CDS
GCCACATACCTCAGATGTAG+TGG 0.573931 2_3:-48621662 None:intergenic
TCACCCAACTCGAAGAACTC+GGG 0.575066 2_3:+48618744 Msa0295840:five_prime_UTR
TACAGGCAGGATGGAAGTTG+TGG 0.575586 2_3:+48620848 Msa0295840:intron
CAGGAGCTATTTCCTTACAA+AGG 0.576904 2_3:+48620545 Msa0295840:intron
TATTTCCTTACAAAGGATGG+TGG 0.578819 2_3:+48620552 Msa0295840:CDS
AGGTTCTCTTACAGTCAACA+TGG 0.583530 2_3:-48620711 None:intergenic
AGGTGAAGATGGTGAATTAG+CGG 0.589212 2_3:+48619038 Msa0295840:CDS
CGTAGGAGACTGGATTGCAC+AGG 0.590898 2_3:+48620211 Msa0295840:CDS
TCCACTACATCTGAGGTATG+TGG 0.594924 2_3:+48621661 Msa0295840:CDS
CGACCATGCAGTTTGATCGA+AGG 0.598693 2_3:-48620594 None:intergenic
GAGCTTACATAGAAACGCGT+TGG 0.599393 2_3:-48618723 None:intergenic
TAATGAGAATGAAGAGAATG+TGG 0.602012 2_3:+48619146 Msa0295840:CDS
GTGGAGATGGAAGGTGAAGA+TGG 0.604002 2_3:+48619027 Msa0295840:CDS
CGGAAGCCATTGAAGTGAGT+TGG 0.605246 2_3:-48618780 None:intergenic
TTGGTTTGGAAATTGAAGGG+AGG 0.611704 2_3:-48618831 None:intergenic
ATTTCCTTACAAAGGATGGT+GGG 0.611721 2_3:+48620553 Msa0295840:CDS
GTGAGGTACGGTGCTGTGAA+CGG 0.621994 2_3:-48618800 None:intergenic
TAAGCTAACCAGTTGTGTAG+AGG 0.623564 2_3:-48620125 None:intergenic
GTATGAACCACCATCTAACT+CGG 0.626281 2_3:-48622131 None:intergenic
AGCGAAATCCACTACATCTG+AGG 0.636729 2_3:+48621654 Msa0295840:CDS
CTTCACCTTCCATCTCCACA+CGG 0.637587 2_3:-48619023 None:intergenic
GGTTCTCTTACAGTCAACAT+GGG 0.640571 2_3:-48620710 None:intergenic
GTGCACGGATGTTCAGATCA+GGG 0.649536 2_3:+48620370 Msa0295840:CDS
TTGCCTTCGATCAAACTGCA+TGG 0.649875 2_3:+48620591 Msa0295840:CDS
TGCCAAGATGGTGATTAGTG+GGG 0.651615 2_3:+48620178 Msa0295840:CDS
GAATTTCACAAAACGTGCAG+CGG 0.660249 2_3:+48618912 Msa0295840:CDS
GTGAGCCGTGTGGAGATGGA+AGG 0.660357 2_3:+48619018 Msa0295840:CDS
GAAGGGAGGAAAGTGTGGTG+AGG 0.665797 2_3:-48618817 None:intergenic
GCATTTACTATACAGTTGTG+GGG 0.671450 2_3:+48620630 Msa0295840:CDS
AAATTGAAGGGAGGAAAGTG+TGG 0.672436 2_3:-48618822 None:intergenic
ACGCGTTGGTTCGTTTACAG+CGG 0.676187 2_3:-48618709 None:intergenic
TGATTGGAGAATCAAAACGC+AGG 0.680696 2_3:-48620655 None:intergenic
GGTAGTGACGAAAGTATCAA+CGG 0.681763 2_3:+48618933 Msa0295840:CDS
GAGATGACCGAGTTAGATGG+TGG 0.691937 2_3:+48622124 Msa0295840:three_prime_UTR
GTTCTCTTACAGTCAACATG+GGG 0.723534 2_3:-48620709 None:intergenic
AGGTTTGATAGTGAGCCGTG+TGG 0.739464 2_3:+48619008 Msa0295840:CDS
AGTGACGAAAGTATCAACGG+AGG 0.779927 2_3:+48618936 Msa0295840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAACATAAAGTAA+AGG - chr2_3:48619466-48619485 None:intergenic 10.0%
!! TTAAAAATAAAAACAAAAAC+AGG - chr2_3:48621750-48621769 None:intergenic 10.0%
!! GATAGAAAATATTATTATAA+TGG + chr2_3:48621813-48621832 Msa0295840:CDS 10.0%
!! AATTCATTGAAAATATTGAT+TGG - chr2_3:48620674-48620693 None:intergenic 15.0%
!!! GTTAAAAAGCATTTATATTA+TGG + chr2_3:48621722-48621741 Msa0295840:intron 15.0%
!!! AATCTTTTCATATATTTATC+AGG + chr2_3:48621769-48621788 Msa0295840:intron 15.0%
!!! TTACTATTGATAGTGATTAT+TGG + chr2_3:48619250-48619269 Msa0295840:CDS 20.0%
!!! AATTTGCAATTTTATAGACT+AGG + chr2_3:48619381-48619400 Msa0295840:intron 20.0%
!!! CAATATTTTCAATGAATTGA+AGG + chr2_3:48620676-48620695 Msa0295840:CDS 20.0%
!!! TTCCTTAAATTTTCTTATAC+AGG + chr2_3:48620831-48620850 Msa0295840:intron 20.0%
!! ATGATAAACACTTATCTATA+TGG + chr2_3:48621102-48621121 Msa0295840:intron 20.0%
!! TAACATACATGAATTTCTTA+GGG - chr2_3:48621937-48621956 None:intergenic 20.0%
!!! ATTTTGGTTTGGAAATTGAA+GGG - chr2_3:48618837-48618856 None:intergenic 25.0%
!!! AATGGATTTTGATTTTGGTT+TGG - chr2_3:48618848-48618867 None:intergenic 25.0%
!!! TTGGAAATGGATTTTGATTT+TGG - chr2_3:48618853-48618872 None:intergenic 25.0%
! GACTTGGAAATGATTAAATT+TGG + chr2_3:48619333-48619352 Msa0295840:intron 25.0%
! GTAAACTTCTCATCAAAATT+AGG + chr2_3:48619711-48619730 Msa0295840:intron 25.0%
!! AAATATTTTTCCATACGCAT+TGG - chr2_3:48619797-48619816 None:intergenic 25.0%
! CGTATGGAAAAATATTTGTT+TGG + chr2_3:48619800-48619819 Msa0295840:intron 25.0%
!! CACGTTTAAATTAGCTTATT+TGG - chr2_3:48619979-48619998 None:intergenic 25.0%
! TCAAGATAATCAAATTTGAC+TGG - chr2_3:48620027-48620046 None:intergenic 25.0%
!! ATTACCATTTATTTGTTGCA+TGG + chr2_3:48620741-48620760 Msa0295840:intron 25.0%
! TGCCTGTATAAGAAAATTTA+AGG - chr2_3:48620836-48620855 None:intergenic 25.0%
!! TTAAATTTTCTTATACAGGC+AGG + chr2_3:48620835-48620854 Msa0295840:intron 25.0%
! TAAGTTATTAGATGAGCAAA+TGG - chr2_3:48620874-48620893 None:intergenic 25.0%
! TTTGCTCATCTAATAACTTA+CGG + chr2_3:48620874-48620893 Msa0295840:CDS 25.0%
! TAGATATGATAGAGCTTATT+TGG + chr2_3:48620929-48620948 Msa0295840:CDS 25.0%
! AGATATGATAGAGCTTATTT+GGG + chr2_3:48620930-48620949 Msa0295840:CDS 25.0%
! ATAAACTTACGTTGAAAGTA+TGG - chr2_3:48620959-48620978 None:intergenic 25.0%
! AACACTTAATCAATTAGTGT+AGG - chr2_3:48621079-48621098 None:intergenic 25.0%
!! TTATAATGGAATGAAGTTCA+CGG + chr2_3:48621827-48621846 Msa0295840:CDS 25.0%
! CTAACATACATGAATTTCTT+AGG - chr2_3:48621938-48621957 None:intergenic 25.0%
! CTAAGAAATTCATGTATGTT+AGG + chr2_3:48621936-48621955 Msa0295840:CDS 25.0%
! TGAACAATTACATTGTGTAA+TGG - chr2_3:48621985-48622004 None:intergenic 25.0%
! AGGTCAAAATTGTGTATATA+TGG + chr2_3:48622092-48622111 Msa0295840:three_prime_UTR 25.0%
! CAAAATTGTGTATATATGGA+TGG + chr2_3:48622096-48622115 Msa0295840:three_prime_UTR 25.0%
! AATGATGAGAATTTCTCAAT+TGG + chr2_3:48622164-48622183 Msa0295840:three_prime_UTR 25.0%
!!! GATTTTGGTTTGGAAATTGA+AGG - chr2_3:48618838-48618857 None:intergenic 30.0%
!! TTTTGTGAAATTCGGATTAG+TGG - chr2_3:48618905-48618924 None:intergenic 30.0%
TAATGAGAATGAAGAGAATG+TGG + chr2_3:48619146-48619165 Msa0295840:CDS 30.0%
GATTAAATTTGGTTGTACTG+TGG + chr2_3:48619344-48619363 Msa0295840:intron 30.0%
AAAATAAGTCAATCCAAACC+CGG - chr2_3:48619407-48619426 None:intergenic 30.0%
! TTTTATTCATAAGCTTGTCG+AGG - chr2_3:48619575-48619594 None:intergenic 30.0%
AAAAACTAAGCCAATCCAAA+CGG + chr2_3:48619642-48619661 Msa0295840:intron 30.0%
!!! CGAAGAACTATACTTTTTCT+TGG - chr2_3:48619903-48619922 None:intergenic 30.0%
TAGACCAACTTTAAATTAGC+AGG - chr2_3:48619941-48619960 None:intergenic 30.0%
AGCTAATCTAAATTAGCAAC+TGG - chr2_3:48620004-48620023 None:intergenic 30.0%
! TGAATTTTTCCTTATCTGCT+AGG + chr2_3:48620044-48620063 Msa0295840:intron 30.0%
!! TTACTATTACCAGTTTTGTG+AGG + chr2_3:48620428-48620447 Msa0295840:CDS 30.0%
GGAAAAGAACATTGTTCATA+TGG - chr2_3:48620458-48620477 None:intergenic 30.0%
ATTCAAGAACAATGCAAGAA+AGG - chr2_3:48620479-48620498 None:intergenic 30.0%
TTCTTGAATTGTCTGACTTA+TGG + chr2_3:48620490-48620509 Msa0295840:intron 30.0%
AGCATTTACTATACAGTTGT+GGG + chr2_3:48620629-48620648 Msa0295840:CDS 30.0%
AATAAATGGTAATAGCCAGA+AGG - chr2_3:48620734-48620753 None:intergenic 30.0%
GTTTCCATGCAACAAATAAA+TGG - chr2_3:48620748-48620767 None:intergenic 30.0%
!! ATTATTTTTCTGAGAACCAG+TGG + chr2_3:48620772-48620791 Msa0295840:intron 30.0%
ACTTTCAACGTAAGTTTATC+TGG + chr2_3:48620960-48620979 Msa0295840:intron 30.0%
ACTATACAATTTCTCCTAGA+TGG - chr2_3:48621014-48621033 None:intergenic 30.0%
ATGTGTGAAAATGCATAGTA+TGG + chr2_3:48621047-48621066 Msa0295840:intron 30.0%
! ACTTGTGTTTTGTGATTGTT+TGG - chr2_3:48621270-48621289 None:intergenic 30.0%
! AAAGGAGCATACAGTTTATT+TGG - chr2_3:48621541-48621560 None:intergenic 30.0%
! CAATGGATATTTGCTAAGTT+TGG + chr2_3:48621700-48621719 Msa0295840:intron 30.0%
TCTATGTCCAAACCAAATTA+AGG - chr2_3:48621862-48621881 None:intergenic 30.0%
TAGGATTCATTCTGTTAAAC+AGG + chr2_3:48622072-48622091 Msa0295840:three_prime_UTR 30.0%
GAGAAATTCTCATCATTTGT+GGG - chr2_3:48622161-48622180 None:intergenic 30.0%
TGAGAAATTCTCATCATTTG+TGG - chr2_3:48622162-48622181 None:intergenic 30.0%
!! AAAGTTTTGTGGCTTGGAAA+TGG - chr2_3:48618866-48618885 None:intergenic 35.0%
! CTTGATACTGGAAAGTTTTG+TGG - chr2_3:48618877-48618896 None:intergenic 35.0%
TTAGTGGAGAATCTTGATAC+TGG - chr2_3:48618889-48618908 None:intergenic 35.0%
AATATTACAGACCAGCAAGA+AGG + chr2_3:48618988-48619007 Msa0295840:CDS 35.0%
!! GAATGAAGGTTTGTTATCGT+TGG + chr2_3:48619092-48619111 Msa0295840:CDS 35.0%
! TGCAATTTTATAGACTAGGC+CGG + chr2_3:48619385-48619404 Msa0295840:intron 35.0%
AATCACTATACCGTTTGGAT+TGG - chr2_3:48619655-48619674 None:intergenic 35.0%
GTCATAATCACTATACCGTT+TGG - chr2_3:48619660-48619679 None:intergenic 35.0%
TTAGGTCATAGTTACCAACT+TGG + chr2_3:48619729-48619748 Msa0295840:intron 35.0%
TAGTCTATACATTTGCATGC+AGG + chr2_3:48619867-48619886 Msa0295840:intron 35.0%
AGTCTATACATTTGCATGCA+GGG + chr2_3:48619868-48619887 Msa0295840:intron 35.0%
! GAGTCCTGCTAATTTAAAGT+TGG + chr2_3:48619934-48619953 Msa0295840:intron 35.0%
AACACAAATCCTAGCAGATA+AGG - chr2_3:48620056-48620075 None:intergenic 35.0%
! CAATCTTTTATCATGCACTG+TGG + chr2_3:48620289-48620308 Msa0295840:intron 35.0%
ATGGAGATATGCTAATCAAG+TGG + chr2_3:48620509-48620528 Msa0295840:intron 35.0%
! AGCTATTTCCTTACAAAGGA+TGG + chr2_3:48620549-48620568 Msa0295840:CDS 35.0%
TATTTCCTTACAAAGGATGG+TGG + chr2_3:48620552-48620571 Msa0295840:CDS 35.0%
ATTTCCTTACAAAGGATGGT+GGG + chr2_3:48620553-48620572 Msa0295840:CDS 35.0%
CAGCATTTACTATACAGTTG+TGG + chr2_3:48620628-48620647 Msa0295840:CDS 35.0%
GCATTTACTATACAGTTGTG+GGG + chr2_3:48620630-48620649 Msa0295840:CDS 35.0%
! ATTTTCTTATACAGGCAGGA+TGG + chr2_3:48620839-48620858 Msa0295840:intron 35.0%
AGTTGAGCAAAGACTTCTTT+GGG + chr2_3:48620906-48620925 Msa0295840:CDS 35.0%
! CTGCATAGAATTTTCCATCT+AGG + chr2_3:48620997-48621016 Msa0295840:intron 35.0%
TCATACTCAAAGATAGAACG+TGG + chr2_3:48621130-48621149 Msa0295840:intron 35.0%
AGCACTTGATCAATTAGTGT+AGG - chr2_3:48621313-48621332 None:intergenic 35.0%
TTACATTGTGTAATGGCTAC+AGG - chr2_3:48621978-48621997 None:intergenic 35.0%
TATTACAATGCAGTCGAGAT+AGG + chr2_3:48622053-48622072 Msa0295840:three_prime_UTR 35.0%
AACTCACCAACTCACTTCAA+TGG + chr2_3:48618774-48618793 Msa0295840:exon 40.0%
AAATTGAAGGGAGGAAAGTG+TGG - chr2_3:48618825-48618844 None:intergenic 40.0%
!! TTGGTTTGGAAATTGAAGGG+AGG - chr2_3:48618834-48618853 None:intergenic 40.0%
!! TACTGGAAAGTTTTGTGGCT+TGG - chr2_3:48618872-48618891 None:intergenic 40.0%
! GCTGCACGTTTTGTGAAATT+CGG - chr2_3:48618913-48618932 None:intergenic 40.0%
GAATTTCACAAAACGTGCAG+CGG + chr2_3:48618912-48618931 Msa0295840:CDS 40.0%
!! GGTAGTGACGAAAGTATCAA+CGG + chr2_3:48618933-48618952 Msa0295840:CDS 40.0%
TCACTATCAAACCTTCTTGC+TGG - chr2_3:48619002-48619021 None:intergenic 40.0%
AGGTGAAGATGGTGAATTAG+CGG + chr2_3:48619038-48619057 Msa0295840:CDS 40.0%
! AATGGATTTGGAGCGAATGA+AGG + chr2_3:48619078-48619097 Msa0295840:CDS 40.0%
!! GAAGGTTTGTTATCGTTGGA+AGG + chr2_3:48619096-48619115 Msa0295840:CDS 40.0%
GCTAGTATTGTTCTTGTTGC+TGG + chr2_3:48619204-48619223 Msa0295840:CDS 40.0%
ATCGTGTGTCTGTGATTCTT+TGG + chr2_3:48619311-48619330 Msa0295840:intron 40.0%
TGTCTGTGATTCTTTGGACT+TGG + chr2_3:48619317-48619336 Msa0295840:intron 40.0%
! GCAATTTTATAGACTAGGCC+GGG + chr2_3:48619386-48619405 Msa0295840:intron 40.0%
!!! AGTTTTTAGCGTATGCGAAC+TGG - chr2_3:48619629-48619648 None:intergenic 40.0%
GCTAGAAATCGACACAAACT+TGG - chr2_3:48619682-48619701 None:intergenic 40.0%
!! GTTTGTGTCGATTTCTAGCT+TGG + chr2_3:48619683-48619702 Msa0295840:intron 40.0%
!! ACTTGAGTTGATCGATCCAT+TGG + chr2_3:48619771-48619790 Msa0295840:intron 40.0%
TATACATTTGCATGCAGGGA+GGG + chr2_3:48619872-48619891 Msa0295840:intron 40.0%
CTGCTAGGATTTGTGTTTCT+TGG + chr2_3:48620059-48620078 Msa0295840:intron 40.0%
!! TGTGTTTCTTGGTGCTATGT+AGG + chr2_3:48620070-48620089 Msa0295840:intron 40.0%
!! GTGTTTCTTGGTGCTATGTA+GGG + chr2_3:48620071-48620090 Msa0295840:intron 40.0%
TAAGCTAACCAGTTGTGTAG+AGG - chr2_3:48620128-48620147 None:intergenic 40.0%
!! ACACAACTGGTTAGCTTATG+AGG + chr2_3:48620130-48620149 Msa0295840:CDS 40.0%
GGAAGCTCTTAAGACAAATC+CGG + chr2_3:48620151-48620170 Msa0295840:CDS 40.0%
! AAATCCGGTTTTTGCCAAGA+TGG + chr2_3:48620166-48620185 Msa0295840:CDS 40.0%
ATCACCATCTTGGCAAAAAC+CGG - chr2_3:48620173-48620192 None:intergenic 40.0%
TTTGCCAAGATGGTGATTAG+TGG + chr2_3:48620176-48620195 Msa0295840:CDS 40.0%
TTGCCAAGATGGTGATTAGT+GGG + chr2_3:48620177-48620196 Msa0295840:CDS 40.0%
TTGTTTATTCCGTAGGAGAC+TGG + chr2_3:48620201-48620220 Msa0295840:CDS 40.0%
TTTCATACACAGCTGAGTCT+CGG + chr2_3:48620253-48620272 Msa0295840:intron 40.0%
!! TTCGAAGCACTGCAATAATC+AGG - chr2_3:48620325-48620344 None:intergenic 40.0%
TGATTATTGCAGTGCTTCGA+AGG + chr2_3:48620324-48620343 Msa0295840:intron 40.0%
!!! TTTTCGAGTTTGATCGTGCA+CGG + chr2_3:48620355-48620374 Msa0295840:CDS 40.0%
! CTTGTTGGATTTGCTCTACA+TGG + chr2_3:48620393-48620412 Msa0295840:CDS 40.0%
TATGGTCTACCTCACAAAAC+TGG - chr2_3:48620440-48620459 None:intergenic 40.0%
AAGTGGTCTCTCATTTATCC+AGG + chr2_3:48620526-48620545 Msa0295840:intron 40.0%
CTTTGTAAGGAAATAGCTCC+TGG - chr2_3:48620547-48620566 None:intergenic 40.0%
! CAGGAGCTATTTCCTTACAA+AGG + chr2_3:48620545-48620564 Msa0295840:intron 40.0%
TGATTGGAGAATCAAAACGC+AGG - chr2_3:48620658-48620677 None:intergenic 40.0%
GTTCTCTTACAGTCAACATG+GGG - chr2_3:48620712-48620731 None:intergenic 40.0%
GGTTCTCTTACAGTCAACAT+GGG - chr2_3:48620713-48620732 None:intergenic 40.0%
AGGTTCTCTTACAGTCAACA+TGG - chr2_3:48620714-48620733 None:intergenic 40.0%
TTGACTGTAAGAGAACCTTC+TGG + chr2_3:48620716-48620735 Msa0295840:intron 40.0%
!! ATTTTTCTGAGAACCAGTGG+TGG + chr2_3:48620775-48620794 Msa0295840:intron 40.0%
CAAGATAATGTTACCACCAC+TGG - chr2_3:48620791-48620810 None:intergenic 40.0%
CAAAGAAGTCTTTGCTCAAC+TGG - chr2_3:48620907-48620926 None:intergenic 40.0%
CAGTTGAGCAAAGACTTCTT+TGG + chr2_3:48620905-48620924 Msa0295840:CDS 40.0%
ACTTGTGTCGTGTAACTGTT+TGG - chr2_3:48621504-48621523 None:intergenic 40.0%
TCCTTTGTATATCTCTGCAG+TGG + chr2_3:48621555-48621574 Msa0295840:intron 40.0%
ACCACTGCAGAGATATACAA+AGG - chr2_3:48621559-48621578 None:intergenic 40.0%
!!! GCTTCTGGTTTTGTGATCAA+TGG + chr2_3:48621683-48621702 Msa0295840:intron 40.0%
GTATGAACCACCATCTAACT+CGG - chr2_3:48622134-48622153 None:intergenic 40.0%
GAATTTCTCAATTGGCTGCT+TGG + chr2_3:48622172-48622191 Msa0295840:three_prime_UTR 40.0%
GGAGCCACACAAAAAGTCAT+AGG + chr2_3:48618663-48618682 Msa0295840:five_prime_UTR 45.0%
! GCGTCCTATGACTTTTTGTG+TGG - chr2_3:48618670-48618689 None:intergenic 45.0%
GAGCTTACATAGAAACGCGT+TGG - chr2_3:48618726-48618745 None:intergenic 45.0%
!! AGTGACGAAAGTATCAACGG+AGG + chr2_3:48618936-48618955 Msa0295840:CDS 45.0%
! ACGACGCAAGTGAATGGATT+TGG + chr2_3:48619066-48619085 Msa0295840:CDS 45.0%
!!! GGAAGGTTTTTCGAGTGCTT+CGG + chr2_3:48619113-48619132 Msa0295840:CDS 45.0%
!!! GAAGGTTTTTCGAGTGCTTC+GGG + chr2_3:48619114-48619133 Msa0295840:CDS 45.0%
!!! TTTTTCGAGTGCTTCGGGTT+TGG + chr2_3:48619119-48619138 Msa0295840:CDS 45.0%
TGAAGAGAATGTGGAGAGTG+TGG + chr2_3:48619155-48619174 Msa0295840:CDS 45.0%
TTTATAGACTAGGCCGGGTT+TGG + chr2_3:48619391-48619410 Msa0295840:intron 45.0%
! TTTCCATACGCATTGGCCAA+TGG - chr2_3:48619790-48619809 None:intergenic 45.0%
CTATACATTTGCATGCAGGG+AGG + chr2_3:48619871-48619890 Msa0295840:intron 45.0%
!! TTCTTGGTGCTATGTAGGGA+TGG + chr2_3:48620075-48620094 Msa0295840:intron 45.0%
GATATGCACCTCTACACAAC+TGG + chr2_3:48620117-48620136 Msa0295840:CDS 45.0%
TGCCAAGATGGTGATTAGTG+GGG + chr2_3:48620178-48620197 Msa0295840:CDS 45.0%
AACCCCACTAATCACCATCT+TGG - chr2_3:48620183-48620202 None:intergenic 45.0%
AGTGGGGTTGTTTATTCCGT+AGG + chr2_3:48620194-48620213 Msa0295840:CDS 45.0%
! CTGAGTCTCGGTTAGTTGAA+TGG + chr2_3:48620265-48620284 Msa0295840:intron 45.0%
GCACGATCAAACTCGAAAAG+AGG - chr2_3:48620354-48620373 None:intergenic 45.0%
ATGTTCAGATCAGGGCTTGT+TGG + chr2_3:48620378-48620397 Msa0295840:CDS 45.0%
ACTACCCACCATCCTTTGTA+AGG - chr2_3:48620560-48620579 None:intergenic 45.0%
TGATCGAAGGCAACTTTGAC+AGG - chr2_3:48620584-48620603 None:intergenic 45.0%
TTGCCTTCGATCAAACTGCA+TGG + chr2_3:48620591-48620610 Msa0295840:CDS 45.0%
CTTCGATCAAACTGCATGGT+CGG + chr2_3:48620595-48620614 Msa0295840:CDS 45.0%
!! TCTCTGCAGTGGTTCTAACA+TGG + chr2_3:48621566-48621585 Msa0295840:intron 45.0%
AGCGAAATCCACTACATCTG+AGG + chr2_3:48621654-48621673 Msa0295840:CDS 45.0%
! TCCACTACATCTGAGGTATG+TGG + chr2_3:48621661-48621680 Msa0295840:CDS 45.0%
! CGCTGGACCTTAATTTGGTT+TGG + chr2_3:48621852-48621871 Msa0295840:CDS 45.0%
TCAGAGATGACCGAGTTAGA+TGG + chr2_3:48622121-48622140 Msa0295840:three_prime_UTR 45.0%
!! ACGCGTTGGTTCGTTTACAG+CGG - chr2_3:48618712-48618731 None:intergenic 50.0%
CTCACCCAACTCGAAGAACT+CGG + chr2_3:48618743-48618762 Msa0295840:five_prime_UTR 50.0%
TCACCCAACTCGAAGAACTC+GGG + chr2_3:48618744-48618763 Msa0295840:five_prime_UTR 50.0%
! CTTCCCGAGTTCTTCGAGTT+GGG - chr2_3:48618750-48618769 None:intergenic 50.0%
CGGAAGCCATTGAAGTGAGT+TGG - chr2_3:48618783-48618802 None:intergenic 50.0%
! GAGGAAAGTGTGGTGAGGTA+CGG - chr2_3:48618815-48618834 None:intergenic 50.0%
!! AGGTTTGATAGTGAGCCGTG+TGG + chr2_3:48619008-48619027 Msa0295840:CDS 50.0%
CTTCACCTTCCATCTCCACA+CGG - chr2_3:48619026-48619045 None:intergenic 50.0%
GTGGAGATGGAAGGTGAAGA+TGG + chr2_3:48619027-48619046 Msa0295840:CDS 50.0%
GATCCATTGGCCAATGCGTA+TGG + chr2_3:48619784-48619803 Msa0295840:intron 50.0%
CTGTGCAATCCAGTCTCCTA+CGG - chr2_3:48620213-48620232 None:intergenic 50.0%
GTGCACGGATGTTCAGATCA+GGG + chr2_3:48620370-48620389 Msa0295840:CDS 50.0%
CGACCATGCAGTTTGATCGA+AGG - chr2_3:48620597-48620616 None:intergenic 50.0%
AAACTGCATGGTCGGCAGTT+TGG + chr2_3:48620603-48620622 Msa0295840:CDS 50.0%
TACAGGCAGGATGGAAGTTG+TGG + chr2_3:48620848-48620867 Msa0295840:intron 50.0%
GCCACATACCTCAGATGTAG+TGG - chr2_3:48621665-48621684 None:intergenic 50.0%
! CATCTGAGGTATGTGGCTTC+TGG + chr2_3:48621668-48621687 Msa0295840:CDS 50.0%
GAGATGACCGAGTTAGATGG+TGG + chr2_3:48622124-48622143 Msa0295840:three_prime_UTR 50.0%
GCTTCCCGAGTTCTTCGAGT+TGG - chr2_3:48618751-48618770 None:intergenic 55.0%
!! GTGAGGTACGGTGCTGTGAA+CGG - chr2_3:48618803-48618822 None:intergenic 55.0%
! GAAGGGAGGAAAGTGTGGTG+AGG - chr2_3:48618820-48618839 None:intergenic 55.0%
GATAGTGAGCCGTGTGGAGA+TGG + chr2_3:48619014-48619033 Msa0295840:CDS 55.0%
! TCGAGTGCTTCGGGTTTGGT+TGG + chr2_3:48619123-48619142 Msa0295840:CDS 55.0%
CGTAGGAGACTGGATTGCAC+AGG + chr2_3:48620211-48620230 Msa0295840:CDS 55.0%
CGTGCACGGATGTTCAGATC+AGG + chr2_3:48620369-48620388 Msa0295840:CDS 55.0%
GAATGAAGTTCACGGTGCGC+TGG + chr2_3:48621835-48621854 Msa0295840:CDS 55.0%
CGGTGCGCTGGACCTTAATT+TGG + chr2_3:48621847-48621866 Msa0295840:CDS 55.0%
GTGAGCCGTGTGGAGATGGA+AGG + chr2_3:48619018-48619037 Msa0295840:CDS 60.0%
GCGACGACGACGCAAGTGAA+TGG + chr2_3:48619060-48619079 Msa0295840:CDS 60.0%
CCACTCGCGTCACACCAAGT+TGG - chr2_3:48619746-48619765 None:intergenic 60.0%
!! CCAACTTGGTGTGACGCGAG+TGG + chr2_3:48619743-48619762 Msa0295840:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 48618650 48622217 48618650 ID=Msa0295840;Name=Msa0295840
chr2_3 mRNA 48618650 48622217 48618650 ID=Msa0295840-mRNA-1;Parent=Msa0295840;Name=Msa0295840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=143|0.83|0.85|1|0.83|0.85|7|210|442
chr2_3 exon 48618650 48619275 48618650 ID=Msa0295840-mRNA-1:exon:15257;Parent=Msa0295840-mRNA-1
chr2_3 exon 48620092 48620232 48620092 ID=Msa0295840-mRNA-1:exon:15258;Parent=Msa0295840-mRNA-1
chr2_3 exon 48620336 48620449 48620336 ID=Msa0295840-mRNA-1:exon:15259;Parent=Msa0295840-mRNA-1
chr2_3 exon 48620548 48620721 48620548 ID=Msa0295840-mRNA-1:exon:15260;Parent=Msa0295840-mRNA-1
chr2_3 exon 48620853 48620968 48620853 ID=Msa0295840-mRNA-1:exon:15261;Parent=Msa0295840-mRNA-1
chr2_3 exon 48621606 48621689 48621606 ID=Msa0295840-mRNA-1:exon:15262;Parent=Msa0295840-mRNA-1
chr2_3 exon 48621791 48622217 48621791 ID=Msa0295840-mRNA-1:exon:15263;Parent=Msa0295840-mRNA-1
chr2_3 five_prime_UTR 48618650 48618792 48618650 ID=Msa0295840-mRNA-1:five_prime_utr;Parent=Msa0295840-mRNA-1
chr2_3 CDS 48618793 48619275 48618793 ID=Msa0295840-mRNA-1:cds;Parent=Msa0295840-mRNA-1
chr2_3 CDS 48620092 48620232 48620092 ID=Msa0295840-mRNA-1:cds;Parent=Msa0295840-mRNA-1
chr2_3 CDS 48620336 48620449 48620336 ID=Msa0295840-mRNA-1:cds;Parent=Msa0295840-mRNA-1
chr2_3 CDS 48620548 48620721 48620548 ID=Msa0295840-mRNA-1:cds;Parent=Msa0295840-mRNA-1
chr2_3 CDS 48620853 48620968 48620853 ID=Msa0295840-mRNA-1:cds;Parent=Msa0295840-mRNA-1
chr2_3 CDS 48621606 48621689 48621606 ID=Msa0295840-mRNA-1:cds;Parent=Msa0295840-mRNA-1
chr2_3 CDS 48621791 48622007 48621791 ID=Msa0295840-mRNA-1:cds;Parent=Msa0295840-mRNA-1
chr2_3 three_prime_UTR 48622008 48622217 48622008 ID=Msa0295840-mRNA-1:three_prime_utr;Parent=Msa0295840-mRNA-1
Gene Sequence

>Msa0295840

ATGGCTTCCGTTCACAGCACCGTACCTCACCACACTTTCCTCCCTTCAATTTCCAAACCAAAATCAAAATCCATTTCCAAGCCACAAAACTTTCCAGTATCAAGATTCTCCACTAATCCGAATTTCACAAAACGTGCAGCGGTAGTGACGAAAGTATCAACGGAGGAGTTCGACGTAATAGCAGTACAGAGCAACAATATTACAGACCAGCAAGAAGGTTTGATAGTGAGCCGTGTGGAGATGGAAGGTGAAGATGGTGAATTAGCGGCGACGACGACGCAAGTGAATGGATTTGGAGCGAATGAAGGTTTGTTATCGTTGGAAGGTTTTTCGAGTGCTTCGGGTTTGGTTGGTAATGAGAATGAAGAGAATGTGGAGAGTGTGGAGAAGCTTCTAGATAGAAGTATTAATGCTAGTATTGTTCTTGTTGCTGGTACTTTTGCTCTTACGAAGCTTCTTACTATTGATAGTGATTATTGGCATGGATGGACAATCTATGAGATAGTAAGATATGCACCTCTACACAACTGGTTAGCTTATGAGGAAGCTCTTAAGACAAATCCGGTTTTTGCCAAGATGGTGATTAGTGGGGTTGTTTATTCCGTAGGAGACTGGATTGCACAGTGCTTCGAAGGAAAGCCTCTTTTCGAGTTTGATCGTGCACGGATGTTCAGATCAGGGCTTGTTGGATTTGCTCTACATGGCTCTCTTTCTCATTACTATTACCAGTTTTGTGAGGAGCTATTTCCTTACAAAGGATGGTGGGTAGTTCCTGTCAAAGTTGCCTTCGATCAAACTGCATGGTCGGCAGTTTGGAACAGCATTTACTATACAGTTGTGGGGATCCTGCGTTTTGATTCTCCAATCAATATTTTCAATGAATTGAAGGCAACATTTTTCCCCATGTTGACTGCAGGATGGAAGTTGTGGCCATTTGCTCATCTAATAACTTACGGTGTAATACCAGTTGAGCAAAGACTTCTTTGGGTAGATATGATAGAGCTTATTTGGGTGACCATACTTTCAACATATTCAAATGAAAAATCAGAAGCAAGAAGCTCTTCAGAGTCTATAGAAGCGAAATCCACTACATCTGAGGTATGTGGCTTCTGGAGTGAAAAAGAAGAGATATGTGATAGAAAATATTATTATAATGGAATGAAGTTCACGGTGCGCTGGACCTTAATTTGGTTTGGACATAGATTTGTAATGCAGAATATTGAAGAAGCTGATTGTATATGTGTATATGTTGTATCCCTAAGAAATTCATGTATGTTAGGCAACATTATCAACTCTCCTGTAGCCATTACACAATGTAATTGTTCATAA

Protein sequence

>Msa0295840

MASVHSTVPHHTFLPSISKPKSKSISKPQNFPVSRFSTNPNFTKRAAVVTKVSTEEFDVIAVQSNNITDQQEGLIVSRVEMEGEDGELAATTTQVNGFGANEGLLSLEGFSSASGLVGNENEENVESVEKLLDRSINASIVLVAGTFALTKLLTIDSDYWHGWTIYEIVRYAPLHNWLAYEEALKTNPVFAKMVISGVVYSVGDWIAQCFEGKPLFEFDRARMFRSGLVGFALHGSLSHYYYQFCEELFPYKGWWVVPVKVAFDQTAWSAVWNSIYYTVVGILRFDSPINIFNELKATFFPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDMIELIWVTILSTYSNEKSEARSSSESIEAKSTTSEVCGFWSEKEEICDRKYYYNGMKFTVRWTLIWFGHRFVMQNIEEADCICVYVVSLRNSCMLGNIINSPVAITQCNCS*