AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1203860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203860 MtrunA17_Chr8g0375081 98.944 663 7 0 1 663 1 663 0.0 1363
Msa1203860 MtrunA17_Chr5g0402211 71.471 680 160 5 1 663 1 663 0.0 988
Msa1203860 MtrunA17_Chr4g0010391 55.819 421 175 3 77 494 51 463 6.88e-151 445
Msa1203860 MtrunA17_Chr5g0399671 27.660 376 240 15 83 447 46 400 1.23e-26 113
Msa1203860 MtrunA17_Chr5g0399661 27.100 369 234 14 75 431 34 379 3.39e-23 102
Msa1203860 MtrunA17_Chr1g0211181 26.440 382 236 11 83 444 12 368 1.61e-16 82.4
Msa1203860 MtrunA17_Chr1g0197161 25.000 364 241 12 83 430 9 356 3.50e-13 72.0
Msa1203860 MtrunA17_Chr1g0211141 25.479 365 236 11 83 431 5 349 3.93e-13 71.6
Msa1203860 MtrunA17_Chr1g0211171 25.882 340 214 9 83 404 9 328 2.90e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203860 AT5G67030.1 67.580 657 207 4 5 658 6 659 0.0 910
Msa1203860 AT5G67030.2 69.125 583 175 3 5 585 6 585 0.0 817
Msa1203860 AT2G35660.1 28.463 397 231 17 51 427 17 380 2.16e-21 97.8
Msa1203860 AT2G29720.1 29.057 265 165 8 188 440 138 391 2.78e-20 94.4
Msa1203860 AT2G35660.2 31.061 264 149 10 179 430 27 269 1.41e-19 90.9
Msa1203860 AT2G35660.3 31.061 264 149 10 179 430 27 269 1.41e-19 90.9
Msa1203860 AT5G05320.1 26.287 369 228 14 83 430 9 354 3.49e-18 87.8
Msa1203860 AT4G38540.1 26.685 371 226 15 83 430 9 356 1.22e-15 80.1
Msa1203860 AT4G15760.1 23.641 368 222 14 91 431 39 374 5.33e-11 65.9

Find 201 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCATCCTTTGGATATT+TGG 0.045763 8_1:-59066246 Msa1203860:three_prime_UTR
GGTCTTGTTGATGGAGTTTC+TGG 0.107276 8_1:-59071629 Msa1203860:CDS
AGGGCTGAATCAACCTTAAT+TGG 0.126115 8_1:+59068567 None:intergenic
ACAGAATACCGACATTTAAA+TGG 0.190529 8_1:-59069289 Msa1203860:CDS
TTCTCATCCTTTGGATATTT+GGG 0.197955 8_1:-59066245 Msa1203860:three_prime_UTR
CTTGTGTTTGTGTTTGTTCT+TGG 0.199979 8_1:-59072160 Msa1203860:five_prime_UTR
ATTATTGTAAAATAAATTAA+AGG 0.207708 8_1:+59072338 None:intergenic
TTTAATTGTGATTTACAAAA+TGG 0.216266 8_1:-59066320 Msa1203860:three_prime_UTR
TTGATGGAGTTTCTGGTTCT+TGG 0.216760 8_1:-59071622 Msa1203860:intron
CATCCTCCTTGGCCCATATT+TGG 0.224325 8_1:+59069218 None:intergenic
CCATGCCATGCAGCCAAATA+TGG 0.234270 8_1:-59069231 Msa1203860:CDS
TGGACACGAGCAGGGTAATT+TGG 0.259273 8_1:+59066801 None:intergenic
TCAACTTCTTTCTCATCCTT+TGG 0.267666 8_1:-59066254 Msa1203860:three_prime_UTR
ATTACTGGTGATAGAATTAA+TGG 0.268199 8_1:-59071650 Msa1203860:CDS
TCCGAGAGCCTGCAACTTAT+TGG 0.279007 8_1:+59067739 None:intergenic
AGGGAAACTATTATTATTAG+AGG 0.287356 8_1:+59072358 None:intergenic
TAAATCAGGGAACCCAATTA+AGG 0.287563 8_1:-59068580 Msa1203860:CDS
ATGACCATTTGATAGATCTT+AGG 0.287721 8_1:-59066160 Msa1203860:three_prime_UTR
ATAAGGTATGTTACCTCCTT+AGG 0.292414 8_1:+59068547 None:intergenic
AAGGTTGCTCAAGATATTTA+AGG 0.302601 8_1:-59069384 Msa1203860:CDS
CCATATGATGTTCTTCAGTT+TGG 0.302837 8_1:-59066777 Msa1203860:CDS
TAGGTCAGGACACAGTTATT+TGG 0.308606 8_1:-59069838 Msa1203860:CDS
ATGAGAGTTGGTTGTATTAC+TGG 0.312017 8_1:-59071665 Msa1203860:CDS
AACCTCCCTCCAACTCTTCC+AGG 0.317004 8_1:+59067923 None:intergenic
GTCTATGTTGAGCTGGATCT+TGG 0.324946 8_1:-59067879 Msa1203860:CDS
GAGATGAAACCCTGCATAAT+CGG 0.328359 8_1:-59067351 Msa1203860:CDS
AGGTGTTGGTCTTGGTCCTT+TGG 0.330707 8_1:-59068080 Msa1203860:CDS
GGGAAGGTACCGAGTATTCT+TGG 0.333711 8_1:-59069622 Msa1203860:intron
CTTGTAGCGGGTGGTGGAAT+TGG 0.338321 8_1:-59071857 Msa1203860:CDS
AAGGTGAGAAGAAGAATCTT+AGG 0.348933 8_1:-59071883 Msa1203860:CDS
GAGTAATGCTTTGGCTGCTT+TGG 0.349359 8_1:-59071720 Msa1203860:CDS
TCATCCTTCTTCGCGATGCT+TGG 0.364245 8_1:+59066600 None:intergenic
CTAGAACCATTCATTAATAA+TGG 0.366611 8_1:+59066211 None:intergenic
GCTGGATCTTGGGTGGAAAT+AGG 0.369630 8_1:-59067868 Msa1203860:intron
GCAGGTTTCATTTCGAGTTA+AGG 0.373966 8_1:-59066637 Msa1203860:intron
TGGGAACAAAGTATTAAATC+AGG 0.382091 8_1:-59068594 Msa1203860:CDS
CAATGAAAAGTCTTTGTTTG+TGG 0.384730 8_1:+59072033 None:intergenic
CAGAATACCGACATTTAAAT+GGG 0.387171 8_1:-59069288 Msa1203860:CDS
CCAAACTGAAGAACATCATA+TGG 0.388753 8_1:+59066777 None:intergenic
TGCGAAATTAACGACATTAC+TGG 0.391898 8_1:+59070538 None:intergenic
AGAATTAATGGTCTTGTTGA+TGG 0.394310 8_1:-59071638 Msa1203860:CDS
TGCAGTGGAACGTGGTCTTC+CGG 0.396487 8_1:-59070636 Msa1203860:CDS
CATTATATTTGCAGTATTGA+AGG 0.397762 8_1:-59066843 Msa1203860:intron
TTATTGTAAAATAAATTAAA+GGG 0.398911 8_1:+59072339 None:intergenic
AAGGTAGACCAATAAGTTGC+AGG 0.399484 8_1:-59067747 Msa1203860:CDS
CCATGATATTTACTTGAGTA+AGG 0.401078 8_1:-59066137 Msa1203860:three_prime_UTR
CTTGAGAAAGATGCTGTAGA+TGG 0.401131 8_1:+59072073 None:intergenic
CAATGGCCATGCATCCTCCT+TGG 0.403273 8_1:+59069207 None:intergenic
ACATGAATGGGAGTGCTTGT+AGG 0.415467 8_1:+59066427 None:intergenic
AATGAAAAGTCTTTGTTTGT+GGG 0.415804 8_1:+59072034 None:intergenic
CATCCTTTGGATATTTGGGC+TGG 0.420832 8_1:-59066241 Msa1203860:three_prime_UTR
GCACTTGAGCGTGCTATTAA+CGG 0.420952 8_1:-59067541 Msa1203860:CDS
GGGCTGAATCAACCTTAATT+GGG 0.424670 8_1:+59068568 None:intergenic
TTATTTATTACGCAGGCAAA+TGG 0.426397 8_1:-59067595 Msa1203860:intron
GCATTACTCTGTATCTGAAT+AGG 0.430156 8_1:+59071734 None:intergenic
AAGGGTCGTGTTACTTTGCT+TGG 0.430187 8_1:-59069263 Msa1203860:CDS
ACTATTATTATTAGAGGTTG+AGG 0.437368 8_1:+59072364 None:intergenic
TGGTTGGAGCAGATGGTATA+TGG 0.438327 8_1:-59070320 Msa1203860:CDS
TCAGATACAGAGTAATGCTT+TGG 0.442106 8_1:-59071729 Msa1203860:CDS
TTACCATGTGGAGAGGAAAC+AGG 0.444036 8_1:-59067405 Msa1203860:CDS
CTGCTGACATTGAATCTGTT+GGG 0.448523 8_1:-59069756 Msa1203860:intron
GGAAGGTACCGAGTATTCTT+GGG 0.449532 8_1:-59069621 Msa1203860:intron
GCATATCTAGGTGTTGGTCT+TGG 0.449896 8_1:-59068088 Msa1203860:CDS
TACTTTGTATCTTCAGATGT+TGG 0.454646 8_1:-59069588 Msa1203860:CDS
TTAGCACCATTATTAATGAA+TGG 0.456923 8_1:-59066217 Msa1203860:three_prime_UTR
AAAATATGAAGGAGACCTAT+TGG 0.457453 8_1:-59070340 Msa1203860:CDS
GCTTTGGCTGCAAAGAGAAA+AGG 0.457691 8_1:-59071821 Msa1203860:CDS
TGTTTGTGGGAATTGAGAAA+AGG 0.460698 8_1:+59072047 None:intergenic
GACCTATTGGTTGGAGCAGA+TGG 0.462758 8_1:-59070327 Msa1203860:CDS
TTTCGCAGACGATGGAAGTA+AGG 0.463415 8_1:-59070522 Msa1203860:intron
AGGTTGCTCAAGATATTTAA+GGG 0.464153 8_1:-59069383 Msa1203860:CDS
TCCACTTACAAGGCATATCT+AGG 0.464186 8_1:-59068100 Msa1203860:CDS
GTTTGTGGGAATTGAGAAAA+GGG 0.464297 8_1:+59072048 None:intergenic
ACCAATAAGTTGCAGGCTCT+CGG 0.466964 8_1:-59067740 Msa1203860:CDS
CGCTCCAAGCATCGCGAAGA+AGG 0.469084 8_1:-59066604 Msa1203860:CDS
TGCTCAAGATATTTAAGGGC+TGG 0.472538 8_1:-59069379 Msa1203860:CDS
TGTTGGTCTTGGTCCTTTGG+AGG 0.476404 8_1:-59068077 Msa1203860:intron
TCTATGTTGAGCTGGATCTT+GGG 0.477932 8_1:-59067878 Msa1203860:CDS
GTATTGAAGGAAAGCGATAC+CGG 0.478385 8_1:-59066830 Msa1203860:CDS
GGCTAGAATGGCAGCTCTGA+TGG 0.480784 8_1:-59068125 Msa1203860:CDS
GACACAGTTATTTGGACAAA+CGG 0.482863 8_1:-59069830 Msa1203860:CDS
AGATGAAACCCTGCATAATC+GGG 0.484055 8_1:-59067350 Msa1203860:intron
GGATCCCTTGCAAAGTCATT+CGG 0.484452 8_1:+59070597 None:intergenic
CCTGCTGACATTGAATCTGT+TGG 0.485317 8_1:-59069757 Msa1203860:CDS
CATGCCATGCAGCCAAATAT+GGG 0.485965 8_1:-59069230 Msa1203860:CDS
GGGATCCTTGCTCGTGCAGT+TGG 0.490259 8_1:-59070581 Msa1203860:CDS
AGGGTGCTTGTAGCGGGTGG+TGG 0.492697 8_1:-59071863 Msa1203860:CDS
TCATATGGGTGGACACGAGC+AGG 0.492859 8_1:+59066792 None:intergenic
TACCATCTGCTCCAACCAAT+AGG 0.492982 8_1:+59070325 None:intergenic
TAAGGTATGTTACCTCCTTA+GGG 0.493151 8_1:+59068548 None:intergenic
GGGTGGTGGAATTGGTGGAT+TGG 0.495418 8_1:-59071849 Msa1203860:CDS
ACCTAGATATGCCTTGTAAG+TGG 0.501034 8_1:+59068099 None:intergenic
CCCTTTCCCCATTTAAATGT+CGG 0.502490 8_1:+59069281 None:intergenic
AATCTTAGGGTGCTTGTAGC+GGG 0.503268 8_1:-59071869 Msa1203860:CDS
TTGAGTGCTGTGAGAGGAGA+GGG 0.503382 8_1:-59071770 Msa1203860:CDS
GAGAAAAGGATTTGAAGTGA+TGG 0.503804 8_1:-59071807 Msa1203860:CDS
AGAGGAGAGGGACAGTATAG+AGG 0.505969 8_1:-59071758 Msa1203860:CDS
TTGGCCCATATTTGGCTGCA+TGG 0.506205 8_1:+59069226 None:intergenic
CCTCATCCTGGAAGAGTTGG+AGG 0.506956 8_1:-59067929 Msa1203860:CDS
CTGCGAGTTGCAGTTATTCA+CGG 0.507455 8_1:-59068151 Msa1203860:CDS
ATTCGGTTCATCAGCACCAC+CGG 0.508435 8_1:+59069524 None:intergenic
TATTCACGGGATGGCTAGAA+TGG 0.508646 8_1:-59068137 Msa1203860:CDS
CATCATCATCTTCAAACCAT+TGG 0.509688 8_1:+59067563 None:intergenic
CAAAGGAGTTGGACAATGCA+TGG 0.510736 8_1:-59068614 Msa1203860:CDS
CCATATTTGGCTGCATGGCA+TGG 0.514534 8_1:+59069231 None:intergenic
GTAGCGGGTGGTGGAATTGG+TGG 0.516236 8_1:-59071854 Msa1203860:CDS
ATTCAATGAGTTGTAACATA+AGG 0.518245 8_1:+59072096 None:intergenic
TTTGTATCTTCAGATGTTGG+AGG 0.518609 8_1:-59069585 Msa1203860:CDS
GCCGGCTATACTTGTTATAC+CGG 0.520952 8_1:-59069796 Msa1203860:CDS
ATTAGCCGAATGACTTTGCA+AGG 0.522092 8_1:-59070602 Msa1203860:CDS
TTATCAACTTGCAAAGGAGT+TGG 0.523536 8_1:-59068625 Msa1203860:CDS
TTGAATGGAGTGACCATGGA+AGG 0.526563 8_1:-59066375 Msa1203860:three_prime_UTR
ATGGCCTAAGATCTATCAAA+TGG 0.527474 8_1:+59066156 None:intergenic
TGCAGGAGTGCAGTGCAAGA+GGG 0.528321 8_1:-59067165 Msa1203860:intron
CCGCATATCAGTTACGAAGA+AGG 0.528473 8_1:+59066970 None:intergenic
GCTGATGAAGTTATGAGAGT+TGG 0.529848 8_1:-59071677 Msa1203860:CDS
TATGAAGGAGACCTATTGGT+TGG 0.530003 8_1:-59070336 Msa1203860:CDS
AAGAGAAATATATACCTCAA+TGG 0.531706 8_1:+59069190 None:intergenic
TGCGGAGTGAACATGGCACT+TGG 0.532423 8_1:-59066952 Msa1203860:CDS
TGATGCCGTCTATGTTGAGC+TGG 0.533051 8_1:-59067886 Msa1203860:CDS
ATGATATTTACTTGAGTAAG+GGG 0.533570 8_1:-59066135 Msa1203860:three_prime_UTR
GGAAGACCACGTTCCACTGC+AGG 0.534367 8_1:+59070638 None:intergenic
AGGCACAAAATCTGCAATAC+CGG 0.535155 8_1:+59069777 None:intergenic
TGCGAGTTGCAGTTATTCAC+GGG 0.536880 8_1:-59068150 Msa1203860:CDS
TCTGATGGCTTCCACTTACA+AGG 0.538355 8_1:-59068110 Msa1203860:CDS
ACCGACATTTAAATGGGGAA+AGG 0.538718 8_1:-59069282 Msa1203860:CDS
CCGACATTTAAATGGGGAAA+GGG 0.542332 8_1:-59069281 Msa1203860:CDS
TCTTCAGTTTGGTTCTGAGA+AGG 0.544271 8_1:-59066766 Msa1203860:intron
CCTTACTCAAGTAAATATCA+TGG 0.545018 8_1:+59066137 None:intergenic
GTAGGCATACCCGATTATGC+AGG 0.545437 8_1:+59067341 None:intergenic
ATTTAAGTTCCTACCTCCAA+AGG 0.549688 8_1:+59068064 None:intergenic
AGGTGAGAAGAAGAATCTTA+GGG 0.549882 8_1:-59071882 Msa1203860:CDS
AGGATGAGGTATGCGAAAGT+TGG 0.550467 8_1:+59067943 None:intergenic
TAGTAAATTCGAGCATGCGT+TGG 0.552353 8_1:+59067004 None:intergenic
CATGATATTTACTTGAGTAA+GGG 0.556833 8_1:-59066136 Msa1203860:three_prime_UTR
AACTTTCGCATACCTCATCC+TGG 0.558624 8_1:-59067941 Msa1203860:CDS
CCTCCAACTCTTCCAGGATG+AGG 0.559187 8_1:+59067929 None:intergenic
TACAAGGCATATCTAGGTGT+TGG 0.563217 8_1:-59068094 Msa1203860:CDS
AGGAGGATGCATGGCCATTG+AGG 0.567803 8_1:-59069204 Msa1203860:intron
ATACCTCATCCTGGAAGAGT+TGG 0.569338 8_1:-59067932 Msa1203860:CDS
GTTTGTGTCCCAAGAATACT+CGG 0.569437 8_1:+59069613 None:intergenic
CATACTTGCCACAGATGAAG+AGG 0.571170 8_1:-59069336 Msa1203860:CDS
CAAACTGAAGAACATCATAT+GGG 0.572944 8_1:+59066778 None:intergenic
CTTCTTCGCGATGCTTGGAG+CGG 0.573401 8_1:+59066605 None:intergenic
GTATCTTCAGATGTTGGAGG+CGG 0.575088 8_1:-59069582 Msa1203860:CDS
ACTGATATGCGGAGTGAACA+TGG 0.575499 8_1:-59066959 Msa1203860:CDS
GCTACATACACTGCCTTCCA+TGG 0.575918 8_1:+59066362 None:intergenic
ACACGAGCAGGGTAATTTGG+AGG 0.579622 8_1:+59066804 None:intergenic
GCAGGAGTGCAGTGCAAGAG+GGG 0.580034 8_1:-59067164 Msa1203860:intron
GTAACATAAGGTAGCAGCCA+TGG 0.580088 8_1:+59072108 None:intergenic
CGGCTAATAACTCTTGTGAC+CGG 0.582389 8_1:+59070617 None:intergenic
TTGCAGGAGTGCAGTGCAAG+AGG 0.583757 8_1:-59067166 Msa1203860:intron
ACCGGTATAACAAGTATAGC+CGG 0.584037 8_1:+59069795 None:intergenic
CAGGGTAATTTGGAGGAACC+CGG 0.584488 8_1:+59066811 None:intergenic
GTAATTGTAATTGAGCTACC+TGG 0.585247 8_1:+59067138 None:intergenic
GCTCGAATTTACTACAAGGA+TGG 0.587794 8_1:-59066995 Msa1203860:CDS
GTAACAGTAGAGCTCGAGAA+TGG 0.588608 8_1:-59070366 Msa1203860:CDS
TTAAGGTTGATTCAGCCCTA+AGG 0.588701 8_1:-59068563 Msa1203860:CDS
CTTCTCCAACTGCACGAGCA+AGG 0.592599 8_1:+59070576 None:intergenic
ATGCAGCCAAATATGGGCCA+AGG 0.593328 8_1:-59069224 Msa1203860:CDS
TGATACATTCACTCCTGCAG+TGG 0.593617 8_1:-59070651 Msa1203860:CDS
CCAACAGATTCAATGTCAGC+AGG 0.596818 8_1:+59069757 None:intergenic
AGTTGCAGTTATTCACGGGA+TGG 0.600750 8_1:-59068146 Msa1203860:CDS
TTCACTCCTGCAGTGGAACG+TGG 0.600761 8_1:-59070644 Msa1203860:CDS
GCGTTTCACAAAGAAGCTCC+CGG 0.600868 8_1:-59069543 Msa1203860:CDS
GGGAACAAAGTATTAAATCA+GGG 0.601894 8_1:-59068593 Msa1203860:CDS
GTGTCTTTATGTCTGATCAA+AGG 0.605084 8_1:+59072198 None:intergenic
TTCGGTTCATCAGCACCACC+GGG 0.607713 8_1:+59069525 None:intergenic
TATGGGCCAAGGAGGATGCA+TGG 0.608374 8_1:-59069213 Msa1203860:CDS
TATTGAAGGAAAGCGATACC+GGG 0.610556 8_1:-59066829 Msa1203860:CDS
CAGAATGGCCTCTTCATCTG+TGG 0.611295 8_1:+59069328 None:intergenic
GAATCTTAGGGTGCTTGTAG+CGG 0.615665 8_1:-59071870 Msa1203860:CDS
AAAGATTTGAGTGCTGTGAG+AGG 0.616999 8_1:-59071776 Msa1203860:CDS
AAGATCCAGCTCAACATAGA+CGG 0.617857 8_1:+59067881 None:intergenic
AATTACAATTACTTCACCCA+AGG 0.618949 8_1:-59067127 Msa1203860:intron
AAAGGAGTTGGACAATGCAT+GGG 0.620153 8_1:-59068613 Msa1203860:CDS
CTTAGGGTGCTTGTAGCGGG+TGG 0.621055 8_1:-59071866 Msa1203860:CDS
CAAATGGACAACTACGCCAA+TGG 0.621482 8_1:-59067579 Msa1203860:CDS
TAGGCATACCCGATTATGCA+GGG 0.621885 8_1:+59067342 None:intergenic
AGCAGATGGTATATGGTCCA+AGG 0.623032 8_1:-59070313 Msa1203860:intron
TTTGAGTGCTGTGAGAGGAG+AGG 0.624147 8_1:-59071771 Msa1203860:CDS
ATGTTGAGCTGGATCTTGGG+TGG 0.625265 8_1:-59067875 Msa1203860:CDS
GGACAGTTATCAACTTGCAA+AGG 0.630008 8_1:-59068631 Msa1203860:CDS
GTAGATGTCTCGTCGCAGAA+TGG 0.634257 8_1:+59069313 None:intergenic
AGGTTGATTCAGCCCTAAGG+AGG 0.635267 8_1:-59068560 Msa1203860:intron
TTGGAGGCGGAAAGATGCAA+TGG 0.637314 8_1:-59069569 Msa1203860:CDS
CAGGAGTGCAGTGCAAGAGG+GGG 0.641480 8_1:-59067163 Msa1203860:CDS
ATCCTGGAAGAGTTGGAGGG+AGG 0.647436 8_1:-59067925 Msa1203860:CDS
CATATGGGTGGACACGAGCA+GGG 0.647782 8_1:+59066793 None:intergenic
AAGCCAGCCCAAATATCCAA+AGG 0.649772 8_1:+59066238 None:intergenic
CAGCCAAATATGGGCCAAGG+AGG 0.650204 8_1:-59069221 Msa1203860:CDS
GCACCACCTTCTTCAAAACA+AGG 0.651636 8_1:-59071902 Msa1203860:CDS
TTAGCCGAATGACTTTGCAA+GGG 0.653020 8_1:-59070601 Msa1203860:CDS
CTCATCCTGGAAGAGTTGGA+GGG 0.658752 8_1:-59067928 Msa1203860:CDS
ACTGAAGAACATCATATGGG+TGG 0.662504 8_1:+59066781 None:intergenic
GCATGCTCGAATTTACTACA+AGG 0.669580 8_1:-59066999 Msa1203860:CDS
CCTTCTTCGTAACTGATATG+CGG 0.673143 8_1:-59066970 Msa1203860:CDS
AGACCTGTTTCCTCTCCACA+TGG 0.688935 8_1:+59067402 None:intergenic
AGAATACCGACATTTAAATG+GGG 0.702793 8_1:-59069287 Msa1203860:CDS
CAAACGGAAGCTGTTTACGC+CGG 0.712858 8_1:-59069814 Msa1203860:CDS
TTTCACAAAGAAGCTCCCGG+TGG 0.766189 8_1:-59069540 Msa1203860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTGTACTAATTT+TGG - chr8_1:59066850-59066869 Msa1203860:intron 10.0%
!! ATTATTTATAGGTTTATTAA+AGG - chr8_1:59067018-59067037 Msa1203860:intron 10.0%
!! AAAAAAATAAAAATTATAGG+AGG - chr8_1:59067198-59067217 Msa1203860:intron 10.0%
!!! AAATTTTACAAATATATTAG+AGG - chr8_1:59070370-59070389 Msa1203860:intron 10.0%
!!! AATTTTACAAATATATTAGA+GGG - chr8_1:59070371-59070390 Msa1203860:intron 10.0%
!!! TTATTTTTTTTGTGTAAACA+GGG + chr8_1:59067188-59067207 None:intergenic 15.0%
!!! TTTATTTTTTTTGTGTAAAC+AGG + chr8_1:59067189-59067208 None:intergenic 15.0%
!! ACAATGATTGAAAAAATTAA+AGG + chr8_1:59069421-59069440 None:intergenic 15.0%
!! AATAATGATAGTTTAACTAT+TGG + chr8_1:59070141-59070160 None:intergenic 15.0%
!! AATAAATTTCTATTAGCATT+CGG + chr8_1:59070801-59070820 None:intergenic 15.0%
!! AATTTATTTATTTATTACGC+AGG - chr8_1:59070813-59070832 Msa1203860:intron 15.0%
!! TTTAATTGTGATTTACAAAA+TGG - chr8_1:59072095-59072114 Msa1203860:CDS 15.0%
!!! TCTTTAATATTTTTTTGATC+TGG + chr8_1:59072349-59072368 None:intergenic 15.0%
!! TTGGTTTATTTGATGTTATT+TGG - chr8_1:59066869-59066888 Msa1203860:intron 20.0%
!! TATTTGGTATTTCAGTTTAT+TGG - chr8_1:59066885-59066904 Msa1203860:intron 20.0%
!! TTAGAACAAATATTTAAGAG+TGG + chr8_1:59067229-59067248 None:intergenic 20.0%
!! AACACAAGATAAAATAAAGT+CGG + chr8_1:59068462-59068481 None:intergenic 20.0%
!! ATTAATCTGTTTATCAAAAC+AGG - chr8_1:59068525-59068544 Msa1203860:intron 20.0%
!! AAAAGAATACAGTAACATTA+AGG + chr8_1:59068552-59068571 None:intergenic 20.0%
!! GAATTAAGAGATTAATATGA+TGG + chr8_1:59068987-59069006 None:intergenic 20.0%
!!! TTTTTCAATCATTGTTTTCT+TGG - chr8_1:59069426-59069445 Msa1203860:intron 20.0%
!!! AACTTTGTTTCTCTAAAAAA+AGG - chr8_1:59069468-59069487 Msa1203860:intron 20.0%
!!! ACTTTGTTTCTCTAAAAAAA+GGG - chr8_1:59069469-59069488 Msa1203860:intron 20.0%
!!! TATCATATTTGAAAAGCATA+AGG + chr8_1:59069888-59069907 None:intergenic 20.0%
!!! AACTATCATTATTTTCGAAT+AGG - chr8_1:59070148-59070167 Msa1203860:intron 20.0%
!!! CACAATTTTACATTTCATTA+TGG + chr8_1:59070593-59070612 None:intergenic 20.0%
!!! TGAACAATGATTTTACTTTT+TGG - chr8_1:59071123-59071142 Msa1203860:intron 20.0%
!! GATATTGAAAAAATTAAGCA+GGG + chr8_1:59071350-59071369 None:intergenic 20.0%
!! TGATATTGAAAAAATTAAGC+AGG + chr8_1:59071351-59071370 None:intergenic 20.0%
!!! TTCCATTTATTTTACTTACT+CGG + chr8_1:59071493-59071512 None:intergenic 20.0%
!! AGACATAGTAGTAATTTATA+TGG - chr8_1:59071723-59071742 Msa1203860:CDS 20.0%
!!! TCAGGATATTTTACAATATT+GGG - chr8_1:59071953-59071972 Msa1203860:CDS 20.0%
!!! AAGTCATATTTTACATGAAT+GGG + chr8_1:59072003-59072022 None:intergenic 20.0%
!!! TAAGTCATATTTTACATGAA+TGG + chr8_1:59072004-59072023 None:intergenic 20.0%
!!! ATAAACTTTCACATTTTGAA+TGG - chr8_1:59072025-59072044 Msa1203860:CDS 20.0%
! AGGGAAACTATTATTATTAG+AGG + chr8_1:59066060-59066079 None:intergenic 25.0%
! GAAGAGATAAAAGAGAAAAA+TGG + chr8_1:59066141-59066160 None:intergenic 25.0%
! ATTCAATGAGTTGTAACATA+AGG + chr8_1:59066322-59066341 None:intergenic 25.0%
!! AATGAAAAGTCTTTGTTTGT+GGG + chr8_1:59066384-59066403 None:intergenic 25.0%
! ATTACTGGTGATAGAATTAA+TGG - chr8_1:59066765-59066784 Msa1203860:intron 25.0%
!!! GTTAGAGGAGTATTATTTAT+AGG - chr8_1:59067007-59067026 Msa1203860:CDS 25.0%
! AACAAATATTTAAGAGTGGA+GGG + chr8_1:59067225-59067244 None:intergenic 25.0%
!! ATAGTTGATATTATCCTCTT+TGG - chr8_1:59067534-59067553 Msa1203860:intron 25.0%
! ACATGCTAAAATTGTAAACA+TGG + chr8_1:59067578-59067597 None:intergenic 25.0%
! GTGTTAATACAACTTTAACT+AGG + chr8_1:59067614-59067633 None:intergenic 25.0%
! AGGAAATTTCTGATAAAGAA+AGG + chr8_1:59067680-59067699 None:intergenic 25.0%
! GCAAATTAGATATCAATTCA+TGG + chr8_1:59067726-59067745 None:intergenic 25.0%
!!! TTGATATCTAATTTGCTATC+AGG - chr8_1:59067730-59067749 Msa1203860:intron 25.0%
!!! TGAAATCAAAAAGCATTATG+AGG + chr8_1:59068028-59068047 None:intergenic 25.0%
!!! TCATAATGCTTTTTGATTTC+AGG - chr8_1:59068027-59068046 Msa1203860:intron 25.0%
!! TTTTATGTCATTCTGTTTGT+AGG - chr8_1:59068234-59068253 Msa1203860:intron 25.0%
!! TACTGTATTCTTTTGTGAAT+AGG - chr8_1:59068558-59068577 Msa1203860:intron 25.0%
! AAATACGGATACAAAACTAA+TGG + chr8_1:59068693-59068712 None:intergenic 25.0%
! CCAAAGAAAATGGATAAATA+CGG + chr8_1:59068708-59068727 None:intergenic 25.0%
! TAAATATACGCCAAAGAAAA+TGG + chr8_1:59068718-59068737 None:intergenic 25.0%
!! AGCTTACTTAAACTTTTCTT+TGG - chr8_1:59068772-59068791 Msa1203860:intron 25.0%
!! GCTTACTTAAACTTTTCTTT+GGG - chr8_1:59068773-59068792 Msa1203860:intron 25.0%
! CACTAAAAATGCATACTATT+CGG + chr8_1:59068911-59068930 None:intergenic 25.0%
! TTTATGCATTGCAGAAAAAA+AGG - chr8_1:59069007-59069026 Msa1203860:intron 25.0%
! AAGAGAAATATATACCTCAA+TGG + chr8_1:59069228-59069247 None:intergenic 25.0%
! ACAAACTTGATATGTACATT+AGG + chr8_1:59069343-59069362 None:intergenic 25.0%
!! CTTTGTTTCTCTAAAAAAAG+GGG - chr8_1:59069470-59069489 Msa1203860:intron 25.0%
!! TTTGTTTCTCTAAAAAAAGG+GGG - chr8_1:59069471-59069490 Msa1203860:intron 25.0%
! ATTAATTAAAGTGGCACTAA+TGG - chr8_1:59069509-59069528 Msa1203860:intron 25.0%
! AAAGAAGCTTAAGTTAGAAA+GGG + chr8_1:59069748-59069767 None:intergenic 25.0%
! AAAAGAAGCTTAAGTTAGAA+AGG + chr8_1:59069749-59069768 None:intergenic 25.0%
!!! TCTTTTTTTTTCATCGTTAC+AGG - chr8_1:59069763-59069782 Msa1203860:CDS 25.0%
! ATGATTAATGTGATCTATGA+AGG + chr8_1:59070117-59070136 None:intergenic 25.0%
!!! TATTTTCGAATAGGTTGATT+TGG - chr8_1:59070157-59070176 Msa1203860:intron 25.0%
! AAAAACTGAAGAGAAAGAAA+AGG + chr8_1:59070450-59070469 None:intergenic 25.0%
! TGATGATACTTGAACATATT+TGG + chr8_1:59070915-59070934 None:intergenic 25.0%
! GAAAGATGGACATAAAAATT+AGG + chr8_1:59070968-59070987 None:intergenic 25.0%
! TCCATCTTTCATTGAATTAT+AGG - chr8_1:59070978-59070997 Msa1203860:intron 25.0%
! ACCTATAATTCAATGAAAGA+TGG + chr8_1:59070982-59071001 None:intergenic 25.0%
! ATCTTTCATTGAATTATAGG+TGG - chr8_1:59070981-59071000 Msa1203860:intron 25.0%
!! TCATTTTGTGTTAAACGTAT+CGG + chr8_1:59071046-59071065 None:intergenic 25.0%
! ATCATTGTTCATGTTTCAAA+AGG + chr8_1:59071114-59071133 None:intergenic 25.0%
! TGATATATTTGTGTAATTGC+AGG - chr8_1:59071233-59071252 Msa1203860:intron 25.0%
!!! AACAATCTCTCTCTTTTTTA+AGG - chr8_1:59071383-59071402 Msa1203860:intron 25.0%
! GAGTAAGTAAAATAAATGGA+AGG - chr8_1:59071492-59071511 Msa1203860:intron 25.0%
!! CATTATATTTGCAGTATTGA+AGG - chr8_1:59071572-59071591 Msa1203860:intron 25.0%
!! GTCAGGATATTTTACAATAT+TGG - chr8_1:59071952-59071971 Msa1203860:CDS 25.0%
! TTAGCACCATTATTAATGAA+TGG - chr8_1:59072198-59072217 Msa1203860:five_prime_UTR 25.0%
! CTAGAACCATTCATTAATAA+TGG + chr8_1:59072207-59072226 None:intergenic 25.0%
! CATGATATTTACTTGAGTAA+GGG - chr8_1:59072279-59072298 Msa1203860:five_prime_UTR 25.0%
! ATGATATTTACTTGAGTAAG+GGG - chr8_1:59072280-59072299 Msa1203860:five_prime_UTR 25.0%
!! GTGTTTGTTCTTGGTTTTTA+AGG - chr8_1:59066264-59066283 Msa1203860:three_prime_UTR 30.0%
! CAATGAAAAGTCTTTGTTTG+TGG + chr8_1:59066385-59066404 None:intergenic 30.0%
! CACAAACAAAGACTTTTCAT+TGG - chr8_1:59066383-59066402 Msa1203860:three_prime_UTR 30.0%
! ACTTCATCTTTTCATAGCTA+TGG - chr8_1:59066411-59066430 Msa1203860:three_prime_UTR 30.0%
AAAACAGAGCAAAAAAACAG+AGG - chr8_1:59066436-59066455 Msa1203860:three_prime_UTR 30.0%
!! AGAATTAATGGTCTTGTTGA+TGG - chr8_1:59066777-59066796 Msa1203860:CDS 30.0%
CTTCTAAATGTTTACACTTG+AGG + chr8_1:59066924-59066943 None:intergenic 30.0%
AAGTATCTAAGTCTTTGAGT+TGG - chr8_1:59066971-59066990 Msa1203860:CDS 30.0%
GAACAAATATTTAAGAGTGG+AGG + chr8_1:59067226-59067245 None:intergenic 30.0%
AGTTGAAACTAAGTTCTCAA+TGG + chr8_1:59067260-59067279 None:intergenic 30.0%
GAGGATAATATCAACTATGA+AGG + chr8_1:59067532-59067551 None:intergenic 30.0%
TTGATATTATCCTCTTTGGT+CGG - chr8_1:59067538-59067557 Msa1203860:CDS 30.0%
TAACCAATCCGATTAGAAAA+GGG + chr8_1:59067638-59067657 None:intergenic 30.0%
ATAACCAATCCGATTAGAAA+AGG + chr8_1:59067639-59067658 None:intergenic 30.0%
CAAATACTAACATCGAGTAA+AGG + chr8_1:59067700-59067719 None:intergenic 30.0%
CTTTACTCGATGTTAGTATT+TGG - chr8_1:59067698-59067717 Msa1203860:intron 30.0%
CATTCTTCTTGAATATGCAT+TGG - chr8_1:59067956-59067975 Msa1203860:intron 30.0%
GAGAATGGTCAAAAATATGA+AGG - chr8_1:59068064-59068083 Msa1203860:intron 30.0%
AAAATATGAAGGAGACCTAT+TGG - chr8_1:59068075-59068094 Msa1203860:intron 30.0%
AAGAAAAGTTAACAAGACCT+TGG + chr8_1:59068122-59068141 None:intergenic 30.0%
CATTGCAAAATACGTTACAA+TGG - chr8_1:59068171-59068190 Msa1203860:CDS 30.0%
ATAAATTCTGCACTTAGAGT+CGG - chr8_1:59068271-59068290 Msa1203860:intron 30.0%
! TATTCTTTTGTGAATAGGTC+AGG - chr8_1:59068563-59068582 Msa1203860:CDS 30.0%
! CCGTATTTATCCATTTTCTT+TGG - chr8_1:59068705-59068724 Msa1203860:intron 30.0%
!! ACTTAAACTTTTCTTTGGGA+AGG - chr8_1:59068777-59068796 Msa1203860:intron 30.0%
TACTTTGTATCTTCAGATGT+TGG - chr8_1:59068827-59068846 Msa1203860:intron 30.0%
AAGGTTGCTCAAGATATTTA+AGG - chr8_1:59069031-59069050 Msa1203860:intron 30.0%
AGGTTGCTCAAGATATTTAA+GGG - chr8_1:59069032-59069051 Msa1203860:intron 30.0%
ACAGAATACCGACATTTAAA+TGG - chr8_1:59069126-59069145 Msa1203860:intron 30.0%
CAGAATACCGACATTTAAAT+GGG - chr8_1:59069127-59069146 Msa1203860:intron 30.0%
AGAATACCGACATTTAAATG+GGG - chr8_1:59069128-59069147 Msa1203860:intron 30.0%
ACATTAGGTCTGAAAAATGT+AGG + chr8_1:59069328-59069347 None:intergenic 30.0%
!!! TTTTAACTTTGCAACCTTGA+GGG + chr8_1:59069573-59069592 None:intergenic 30.0%
!!! ATTTTAACTTTGCAACCTTG+AGG + chr8_1:59069574-59069593 None:intergenic 30.0%
! TTTTCTGCATTAAGAGAAGA+TGG - chr8_1:59069667-59069686 Msa1203860:intron 30.0%
! TGGGAACAAAGTATTAAATC+AGG - chr8_1:59069821-59069840 Msa1203860:CDS 30.0%
! GGGAACAAAGTATTAAATCA+GGG - chr8_1:59069822-59069841 Msa1203860:CDS 30.0%
TTTCAAATTATTACCGGTGT+CGG - chr8_1:59070052-59070071 Msa1203860:intron 30.0%
ATTTGGTATTCTCTTTGATG+AGG - chr8_1:59070174-59070193 Msa1203860:intron 30.0%
! TTTTCTTTCACTTTCATAGC+TGG + chr8_1:59070244-59070263 None:intergenic 30.0%
GAAAGAAAAGGTGGATATTT+CGG + chr8_1:59070438-59070457 None:intergenic 30.0%
TTATTTATTACGCAGGCAAA+TGG - chr8_1:59070820-59070839 Msa1203860:intron 30.0%
AATTACAATTACTTCACCCA+AGG - chr8_1:59071288-59071307 Msa1203860:intron 30.0%
GTGATAAATTGTTCTACCTT+GGG + chr8_1:59071307-59071326 None:intergenic 30.0%
TGTGATAAATTGTTCTACCT+TGG + chr8_1:59071308-59071327 None:intergenic 30.0%
ATCACAACCTGAATTAAACT+CGG - chr8_1:59071322-59071341 Msa1203860:intron 30.0%
CAAACTGAAGAACATCATAT+GGG + chr8_1:59071640-59071659 None:intergenic 30.0%
AATGAAACCTGCAAATAACT+CGG + chr8_1:59071770-59071789 None:intergenic 30.0%
AGCATTATCTGCAATCTTAT+AGG - chr8_1:59071929-59071948 Msa1203860:CDS 30.0%
GCATTATCTGCAATCTTATA+GGG - chr8_1:59071930-59071949 Msa1203860:CDS 30.0%
TTTCTCATCCTTTGGATATT+TGG - chr8_1:59072169-59072188 Msa1203860:five_prime_UTR 30.0%
TTCTCATCCTTTGGATATTT+GGG - chr8_1:59072170-59072189 Msa1203860:five_prime_UTR 30.0%
ATGACCATTTGATAGATCTT+AGG - chr8_1:59072255-59072274 Msa1203860:five_prime_UTR 30.0%
CCTTACTCAAGTAAATATCA+TGG + chr8_1:59072281-59072300 None:intergenic 30.0%
CCATGATATTTACTTGAGTA+AGG - chr8_1:59072278-59072297 Msa1203860:five_prime_UTR 30.0%
GTGTCTTTATGTCTGATCAA+AGG + chr8_1:59066220-59066239 None:intergenic 35.0%
CTTGTGTTTGTGTTTGTTCT+TGG - chr8_1:59066255-59066274 Msa1203860:three_prime_UTR 35.0%
!!! GTGTTTTTTCAACTCAACCA+TGG - chr8_1:59066290-59066309 Msa1203860:three_prime_UTR 35.0%
GTTTGTGGGAATTGAGAAAA+GGG + chr8_1:59066370-59066389 None:intergenic 35.0%
TGTTTGTGGGAATTGAGAAA+AGG + chr8_1:59066371-59066390 None:intergenic 35.0%
!!! TTCTCACCTTGTTTTGAAGA+AGG + chr8_1:59066522-59066541 None:intergenic 35.0%
AAGGTGAGAAGAAGAATCTT+AGG - chr8_1:59066532-59066551 Msa1203860:three_prime_UTR 35.0%
AGGTGAGAAGAAGAATCTTA+GGG - chr8_1:59066533-59066552 Msa1203860:three_prime_UTR 35.0%
! GAGAAAAGGATTTGAAGTGA+TGG - chr8_1:59066608-59066627 Msa1203860:CDS 35.0%
GCATTACTCTGTATCTGAAT+AGG + chr8_1:59066684-59066703 None:intergenic 35.0%
TCAGATACAGAGTAATGCTT+TGG - chr8_1:59066686-59066705 Msa1203860:intron 35.0%
! ATGAGAGTTGGTTGTATTAC+TGG - chr8_1:59066750-59066769 Msa1203860:intron 35.0%
!! TATCTAAGTCTTTGAGTTGG+AGG - chr8_1:59066974-59066993 Msa1203860:CDS 35.0%
GCAGCAATGTTAAAACTCTT+AGG - chr8_1:59067090-59067109 Msa1203860:intron 35.0%
CAACTAGTGTTGTCAAATAG+TGG - chr8_1:59067275-59067294 Msa1203860:intron 35.0%
TGTTGTCAAATAGTGGCTAT+TGG - chr8_1:59067282-59067301 Msa1203860:intron 35.0%
ATATTCATCACAGCTAACGT+TGG - chr8_1:59067469-59067488 Msa1203860:intron 35.0%
TATTCATCACAGCTAACGTT+GGG - chr8_1:59067470-59067489 Msa1203860:intron 35.0%
!!! GACAGTTGGTTTTGATTAAC+CGG - chr8_1:59067492-59067511 Msa1203860:intron 35.0%
!! TTTTGATTAACCGGATGACA+TGG - chr8_1:59067501-59067520 Msa1203860:intron 35.0%
! TTAACACCCCCTTTTCTAAT+CGG - chr8_1:59067627-59067646 Msa1203860:intron 35.0%
AACCAATCCGATTAGAAAAG+GGG + chr8_1:59067637-59067656 None:intergenic 35.0%
TGCGAAATTAACGACATTAC+TGG + chr8_1:59067880-59067899 None:intergenic 35.0%
!! AAAAAGCATTATGAGGAGAG+TGG + chr8_1:59068021-59068040 None:intergenic 35.0%
GGTTTGGATTGACATATTTG+AGG - chr8_1:59068292-59068311 Msa1203860:intron 35.0%
TAAACACTTGTGGTACTGTT+CGG - chr8_1:59068328-59068347 Msa1203860:intron 35.0%
!! CTTATTTTCATACGCTCTCA+AGG - chr8_1:59068398-59068417 Msa1203860:intron 35.0%
GACACAGTTATTTGGACAAA+CGG - chr8_1:59068585-59068604 Msa1203860:CDS 35.0%
ATTGAATCTGTTGGGTATGT+GGG - chr8_1:59068667-59068686 Msa1203860:intron 35.0%
TTTGTATCTTCAGATGTTGG+AGG - chr8_1:59068830-59068849 Msa1203860:intron 35.0%
!! TCTTTTCATCCTTTGCTATG+TGG - chr8_1:59068949-59068968 Msa1203860:intron 35.0%
!! CTTTTCATCCTTTGCTATGT+GGG - chr8_1:59068950-59068969 Msa1203860:intron 35.0%
! AACTTTTACCCACATAGCAA+AGG + chr8_1:59068961-59068980 None:intergenic 35.0%
GCATTGCAGAAAAAAAGGAA+AGG - chr8_1:59069012-59069031 Msa1203860:intron 35.0%
ATAGTGAAGTCTGTAGAATC+TGG + chr8_1:59069367-59069386 None:intergenic 35.0%
TCTACAGACTTCACTATTTC+AGG - chr8_1:59069370-59069389 Msa1203860:CDS 35.0%
CTACAGACTTCACTATTTCA+GGG - chr8_1:59069371-59069390 Msa1203860:CDS 35.0%
! CAATCATTGTTTTCTTGGCT+AGG - chr8_1:59069431-59069450 Msa1203860:intron 35.0%
! TTCTCTAAAAAAAGGGGGAA+TGG - chr8_1:59069476-59069495 Msa1203860:intron 35.0%
! TCTCTAAAAAAAGGGGGAAT+GGG - chr8_1:59069477-59069496 Msa1203860:intron 35.0%
GGAGGAAATTCAAATACTCT+CGG + chr8_1:59069552-59069571 None:intergenic 35.0%
TATTTGAATTTCCTCCCTCA+AGG - chr8_1:59069556-59069575 Msa1203860:CDS 35.0%
TTATCAACTTGCAAAGGAGT+TGG - chr8_1:59069790-59069809 Msa1203860:CDS 35.0%
TAAATCAGGGAACCCAATTA+AGG - chr8_1:59069835-59069854 Msa1203860:CDS 35.0%
TAAGGTATGTTACCTCCTTA+GGG + chr8_1:59069870-59069889 None:intergenic 35.0%
ATAAGGTATGTTACCTCCTT+AGG + chr8_1:59069871-59069890 None:intergenic 35.0%
! TTGACTTGATTTGAACTGAG+TGG - chr8_1:59069929-59069948 Msa1203860:intron 35.0%
CTTTCACAACCTATGAATCA+AGG - chr8_1:59069954-59069973 Msa1203860:intron 35.0%
TGGAAAAGGGAATAAAAGAG+AGG + chr8_1:59070212-59070231 None:intergenic 35.0%
! ATTTAAGTTCCTACCTCCAA+AGG + chr8_1:59070354-59070373 None:intergenic 35.0%
AACTGAAGAGAAAGAAAAGG+TGG + chr8_1:59070447-59070466 None:intergenic 35.0%
! TTTTGCAGTGACAAACTTGA+AGG - chr8_1:59070649-59070668 Msa1203860:CDS 35.0%
TGCTGAGAAGAAATTACATC+TGG - chr8_1:59070742-59070761 Msa1203860:intron 35.0%
CATCATCATCTTCAAACCAT+TGG + chr8_1:59070855-59070874 None:intergenic 35.0%
! AGGTGGTTTTTATTACCATG+TGG - chr8_1:59070998-59071017 Msa1203860:intron 35.0%
! GTTTTTATTACCATGTGGAG+AGG - chr8_1:59071003-59071022 Msa1203860:intron 35.0%
GTAATTGTAATTGAGCTACC+TGG + chr8_1:59071280-59071299 None:intergenic 35.0%
CGCCGAGTAAGTAAAATAAA+TGG - chr8_1:59071488-59071507 Msa1203860:intron 35.0%
CCAAACTGAAGAACATCATA+TGG + chr8_1:59071641-59071660 None:intergenic 35.0%
CCATATGATGTTCTTCAGTT+TGG - chr8_1:59071638-59071657 Msa1203860:CDS 35.0%
TCAACTTCTTTCTCATCCTT+TGG - chr8_1:59072161-59072180 Msa1203860:five_prime_UTR 35.0%
ATGGCCTAAGATCTATCAAA+TGG + chr8_1:59072262-59072281 None:intergenic 35.0%
CTTGAGAAAGATGCTGTAGA+TGG + chr8_1:59066345-59066364 None:intergenic 40.0%
!!! TCACCTTGTTTTGAAGAAGG+TGG + chr8_1:59066519-59066538 None:intergenic 40.0%
!!! TGGTGGATTGGTTTTTGCTT+TGG - chr8_1:59066578-59066597 Msa1203860:CDS 40.0%
! AAAGATTTGAGTGCTGTGAG+AGG - chr8_1:59066639-59066658 Msa1203860:intron 40.0%
GCTGATGAAGTTATGAGAGT+TGG - chr8_1:59066738-59066757 Msa1203860:intron 40.0%
!! TTGATGGAGTTTCTGGTTCT+TGG - chr8_1:59066793-59066812 Msa1203860:CDS 40.0%
!! GGAGGAGCATTTAAAGTTAG+AGG - chr8_1:59066992-59067011 Msa1203860:CDS 40.0%
TTAACATTGCTGCATGCTCA+AGG + chr8_1:59067083-59067102 None:intergenic 40.0%
ACCAATCCGATTAGAAAAGG+GGG + chr8_1:59067636-59067655 None:intergenic 40.0%
ATTAGCCGAATGACTTTGCA+AGG - chr8_1:59067813-59067832 Msa1203860:intron 40.0%
TTAGCCGAATGACTTTGCAA+GGG - chr8_1:59067814-59067833 Msa1203860:intron 40.0%
GTAAGGTAGGTAGAGAAGAA+TGG - chr8_1:59067910-59067929 Msa1203860:CDS 40.0%
TATGCATTGGAAGACTAACG+AGG - chr8_1:59067969-59067988 Msa1203860:intron 40.0%
CTAACGAGGTTTAGCATCAT+CGG - chr8_1:59067983-59068002 Msa1203860:intron 40.0%
TAACGAGGTTTAGCATCATC+GGG - chr8_1:59067984-59068003 Msa1203860:intron 40.0%
TATGAAGGAGACCTATTGGT+TGG - chr8_1:59068079-59068098 Msa1203860:CDS 40.0%
CCACAAGTGTTTATGTCAGT+AGG + chr8_1:59068321-59068340 None:intergenic 40.0%
CCTACTGACATAAACACTTG+TGG - chr8_1:59068318-59068337 Msa1203860:intron 40.0%
TAGGTCAGGACACAGTTATT+TGG - chr8_1:59068577-59068596 Msa1203860:CDS 40.0%
ACCGGTATAACAAGTATAGC+CGG + chr8_1:59068623-59068642 None:intergenic 40.0%
AGGCACAAAATCTGCAATAC+CGG + chr8_1:59068641-59068660 None:intergenic 40.0%
CTGCTGACATTGAATCTGTT+GGG - chr8_1:59068659-59068678 Msa1203860:intron 40.0%
CATTGAATCTGTTGGGTATG+TGG - chr8_1:59068666-59068685 Msa1203860:intron 40.0%
GTTTGTGTCCCAAGAATACT+CGG + chr8_1:59068805-59068824 None:intergenic 40.0%
TGCTCAAGATATTTAAGGGC+TGG - chr8_1:59069036-59069055 Msa1203860:intron 40.0%
ACCGACATTTAAATGGGGAA+AGG - chr8_1:59069133-59069152 Msa1203860:intron 40.0%
CCCTTTCCCCATTTAAATGT+CGG + chr8_1:59069137-59069156 None:intergenic 40.0%
CCGACATTTAAATGGGGAAA+GGG - chr8_1:59069134-59069153 Msa1203860:intron 40.0%
ACCAATGAGCTTACACCTAA+CGG - chr8_1:59069597-59069616 Msa1203860:CDS 40.0%
GGACAGTTATCAACTTGCAA+AGG - chr8_1:59069784-59069803 Msa1203860:CDS 40.0%
AAAGGAGTTGGACAATGCAT+GGG - chr8_1:59069802-59069821 Msa1203860:CDS 40.0%
GGGCTGAATCAACCTTAATT+GGG + chr8_1:59069850-59069869 None:intergenic 40.0%
AGGGCTGAATCAACCTTAAT+TGG + chr8_1:59069851-59069870 None:intergenic 40.0%
! TTAAGGTTGATTCAGCCCTA+AGG - chr8_1:59069852-59069871 Msa1203860:intron 40.0%
! GTGAAGTGTCCTTGATTCAT+AGG + chr8_1:59069966-59069985 None:intergenic 40.0%
ATTGACAGAGACGTGAACAA+TGG + chr8_1:59070094-59070113 None:intergenic 40.0%
CTCTTTGATGAGGTGACTAA+TGG - chr8_1:59070184-59070203 Msa1203860:intron 40.0%
!! CTGGAAGCATTCATGGAAAA+GGG + chr8_1:59070225-59070244 None:intergenic 40.0%
!! TTCATAGCTGGAAGCATTCA+TGG + chr8_1:59070232-59070251 None:intergenic 40.0%
TCCACTTACAAGGCATATCT+AGG - chr8_1:59070315-59070334 Msa1203860:CDS 40.0%
ACCTAGATATGCCTTGTAAG+TGG + chr8_1:59070319-59070338 None:intergenic 40.0%
TACAAGGCATATCTAGGTGT+TGG - chr8_1:59070321-59070340 Msa1203860:CDS 40.0%
AAGATCCAGCTCAACATAGA+CGG + chr8_1:59070537-59070556 None:intergenic 40.0%
TCTATGTTGAGCTGGATCTT+GGG - chr8_1:59070537-59070556 Msa1203860:CDS 40.0%
ATCTTGGGTGGAAATAGGTA+AGG - chr8_1:59070552-59070571 Msa1203860:CDS 40.0%
AAGGTAGACCAATAAGTTGC+AGG - chr8_1:59070668-59070687 Msa1203860:intron 40.0%
GAGATGAAACCCTGCATAAT+CGG - chr8_1:59071064-59071083 Msa1203860:intron 40.0%
AGATGAAACCCTGCATAATC+GGG - chr8_1:59071065-59071084 Msa1203860:intron 40.0%
AAGGCACAACTGTAATCAGT+AGG + chr8_1:59071095-59071114 None:intergenic 40.0%
AGGGAACAATGCACACTAAA+TGG + chr8_1:59071152-59071171 None:intergenic 40.0%
TGCATTGTTCCCTTCTCAAT+TGG - chr8_1:59071159-59071178 Msa1203860:intron 40.0%
TAGTAAATTCGAGCATGCGT+TGG + chr8_1:59071414-59071433 None:intergenic 40.0%
GCATGCTCGAATTTACTACA+AGG - chr8_1:59071416-59071435 Msa1203860:intron 40.0%
GCTCGAATTTACTACAAGGA+TGG - chr8_1:59071420-59071439 Msa1203860:intron 40.0%
CCTTCTTCGTAACTGATATG+CGG - chr8_1:59071445-59071464 Msa1203860:intron 40.0%
GTATTGAAGGAAAGCGATAC+CGG - chr8_1:59071585-59071604 Msa1203860:intron 40.0%
TATTGAAGGAAAGCGATACC+GGG - chr8_1:59071586-59071605 Msa1203860:intron 40.0%
ACTGAAGAACATCATATGGG+TGG + chr8_1:59071637-59071656 None:intergenic 40.0%
!! TCTTCAGTTTGGTTCTGAGA+AGG - chr8_1:59071649-59071668 Msa1203860:CDS 40.0%
!! GCAGGTTTCATTTCGAGTTA+AGG - chr8_1:59071778-59071797 Msa1203860:CDS 40.0%
ATCTGCAATCTTATAGGGTC+AGG - chr8_1:59071935-59071954 Msa1203860:CDS 40.0%
! CATTTTGAATGGAGTGACCA+TGG - chr8_1:59072036-59072055 Msa1203860:CDS 40.0%
GTAACATAAGGTAGCAGCCA+TGG + chr8_1:59066310-59066329 None:intergenic 45.0%
GCACCACCTTCTTCAAAACA+AGG - chr8_1:59066513-59066532 Msa1203860:intron 45.0%
! GAATCTTAGGGTGCTTGTAG+CGG - chr8_1:59066545-59066564 Msa1203860:three_prime_UTR 45.0%
! AATCTTAGGGTGCTTGTAGC+GGG - chr8_1:59066546-59066565 Msa1203860:three_prime_UTR 45.0%
GCTTTGGCTGCAAAGAGAAA+AGG - chr8_1:59066594-59066613 Msa1203860:CDS 45.0%
GAGTAATGCTTTGGCTGCTT+TGG - chr8_1:59066695-59066714 Msa1203860:intron 45.0%
!! GGTCTTGTTGATGGAGTTTC+TGG - chr8_1:59066786-59066805 Msa1203860:CDS 45.0%
AAGGACCTTGGCTAAGCTAA+GGG + chr8_1:59067048-59067067 None:intergenic 45.0%
! ACTAATCTCTCGAGCCTTGT+GGG + chr8_1:59067139-59067158 None:intergenic 45.0%
TCGCAGATCACGGAAAATAG+TGG + chr8_1:59067421-59067440 None:intergenic 45.0%
GTGTTGTCAATCGCAGATCA+CGG + chr8_1:59067431-59067450 None:intergenic 45.0%
TGATCTGCGATTGACAACAC+TGG - chr8_1:59067431-59067450 Msa1203860:intron 45.0%
TATTATCCTCTTTGGTCGGC+TGG - chr8_1:59067542-59067561 Msa1203860:CDS 45.0%
! ACCCCCTTTTCTAATCGGAT+TGG - chr8_1:59067632-59067651 Msa1203860:intron 45.0%
TGATACATTCACTCCTGCAG+TGG - chr8_1:59067764-59067783 Msa1203860:intron 45.0%
CGGCTAATAACTCTTGTGAC+CGG + chr8_1:59067801-59067820 None:intergenic 45.0%
GGATCCCTTGCAAAGTCATT+CGG + chr8_1:59067821-59067840 None:intergenic 45.0%
GTCGTTAATTTCGCAGACGA+TGG - chr8_1:59067885-59067904 Msa1203860:CDS 45.0%
TTTCGCAGACGATGGAAGTA+AGG - chr8_1:59067893-59067912 Msa1203860:CDS 45.0%
GTAACAGTAGAGCTCGAGAA+TGG - chr8_1:59068049-59068068 Msa1203860:intron 45.0%
TACCATCTGCTCCAACCAAT+AGG + chr8_1:59068093-59068112 None:intergenic 45.0%
TGGTTGGAGCAGATGGTATA+TGG - chr8_1:59068095-59068114 Msa1203860:CDS 45.0%
AGCAGATGGTATATGGTCCA+AGG - chr8_1:59068102-59068121 Msa1203860:CDS 45.0%
TTCTGCACTTAGAGTCGGTT+TGG - chr8_1:59068276-59068295 Msa1203860:intron 45.0%
!! GCCGGCTATACTTGTTATAC+CGG - chr8_1:59068619-59068638 Msa1203860:CDS 45.0%
CCAACAGATTCAATGTCAGC+AGG + chr8_1:59068661-59068680 None:intergenic 45.0%
CCTGCTGACATTGAATCTGT+TGG - chr8_1:59068658-59068677 Msa1203860:intron 45.0%
!! GGAAGGTACCGAGTATTCTT+GGG - chr8_1:59068794-59068813 Msa1203860:intron 45.0%
GTATCTTCAGATGTTGGAGG+CGG - chr8_1:59068833-59068852 Msa1203860:intron 45.0%
CATACTTGCCACAGATGAAG+AGG - chr8_1:59069079-59069098 Msa1203860:intron 45.0%
!! AAGGGTCGTGTTACTTTGCT+TGG - chr8_1:59069152-59069171 Msa1203860:intron 45.0%
CATGCCATGCAGCCAAATAT+GGG - chr8_1:59069185-59069204 Msa1203860:intron 45.0%
TAACTTTGCAACCTTGAGGG+AGG + chr8_1:59069570-59069589 None:intergenic 45.0%
TCCGTTAGGTGTAAGCTCAT+TGG + chr8_1:59069601-59069620 None:intergenic 45.0%
TGAGCTTACACCTAACGGAA+TGG - chr8_1:59069602-59069621 Msa1203860:CDS 45.0%
TCTGAATCCACCATTCCGTT+AGG + chr8_1:59069615-59069634 None:intergenic 45.0%
CAAAGGAGTTGGACAATGCA+TGG - chr8_1:59069801-59069820 Msa1203860:CDS 45.0%
AGAGACGTGAACAATGGACA+AGG + chr8_1:59070088-59070107 None:intergenic 45.0%
!! GCTGGAAGCATTCATGGAAA+AGG + chr8_1:59070226-59070245 None:intergenic 45.0%
CTGCGAGTTGCAGTTATTCA+CGG - chr8_1:59070264-59070283 Msa1203860:intron 45.0%
TGCGAGTTGCAGTTATTCAC+GGG - chr8_1:59070265-59070284 Msa1203860:intron 45.0%
AGTTGCAGTTATTCACGGGA+TGG - chr8_1:59070269-59070288 Msa1203860:intron 45.0%
TATTCACGGGATGGCTAGAA+TGG - chr8_1:59070278-59070297 Msa1203860:intron 45.0%
TCTGATGGCTTCCACTTACA+AGG - chr8_1:59070305-59070324 Msa1203860:intron 45.0%
!! GCATATCTAGGTGTTGGTCT+TGG - chr8_1:59070327-59070346 Msa1203860:CDS 45.0%
AGGATGAGGTATGCGAAAGT+TGG + chr8_1:59070475-59070494 None:intergenic 45.0%
AACTTTCGCATACCTCATCC+TGG - chr8_1:59070474-59070493 Msa1203860:intron 45.0%
ATACCTCATCCTGGAAGAGT+TGG - chr8_1:59070483-59070502 Msa1203860:intron 45.0%
GTCTATGTTGAGCTGGATCT+TGG - chr8_1:59070536-59070555 Msa1203860:CDS 45.0%
ACCAATAAGTTGCAGGCTCT+CGG - chr8_1:59070675-59070694 Msa1203860:intron 45.0%
CAAATGGACAACTACGCCAA+TGG - chr8_1:59070836-59070855 Msa1203860:intron 45.0%
! GCACTTGAGCGTGCTATTAA+CGG - chr8_1:59070874-59070893 Msa1203860:intron 45.0%
TTACCATGTGGAGAGGAAAC+AGG - chr8_1:59071010-59071029 Msa1203860:intron 45.0%
TAGGCATACCCGATTATGCA+GGG + chr8_1:59071076-59071095 None:intergenic 45.0%
CAGGGAACCGAGTTTAATTC+AGG + chr8_1:59071332-59071351 None:intergenic 45.0%
CCGCATATCAGTTACGAAGA+AGG + chr8_1:59071448-59071467 None:intergenic 45.0%
ACTGATATGCGGAGTGAACA+TGG - chr8_1:59071456-59071475 Msa1203860:intron 45.0%
GTAGCATCCGAGTTATTTGC+AGG - chr8_1:59071760-59071779 Msa1203860:CDS 45.0%
!! ACATGAATGGGAGTGCTTGT+AGG + chr8_1:59071991-59072010 None:intergenic 45.0%
TTGAATGGAGTGACCATGGA+AGG - chr8_1:59072040-59072059 Msa1203860:CDS 45.0%
CATCCTTTGGATATTTGGGC+TGG - chr8_1:59072174-59072193 Msa1203860:five_prime_UTR 45.0%
AAGCCAGCCCAAATATCCAA+AGG + chr8_1:59072180-59072199 None:intergenic 45.0%
!! TTATTGTAAAATAAATTAAA+GGG + chr8_1:59066079-59066098 None:intergenic 5.0%
!! ATTATTGTAAAATAAATTAA+AGG + chr8_1:59066080-59066099 None:intergenic 5.0%
!! ACAAAAAAAATAAAAATTAT+AGG - chr8_1:59067195-59067214 Msa1203860:intron 5.0%
!! AATATTATTATTAATTAAAG+TGG - chr8_1:59069500-59069519 Msa1203860:intron 5.0%
! TTTGAGTGCTGTGAGAGGAG+AGG - chr8_1:59066644-59066663 Msa1203860:intron 50.0%
! TTGAGTGCTGTGAGAGGAGA+GGG - chr8_1:59066645-59066664 Msa1203860:intron 50.0%
AGAGGAGAGGGACAGTATAG+AGG - chr8_1:59066657-59066676 Msa1203860:intron 50.0%
CAAGGACCTTGGCTAAGCTA+AGG + chr8_1:59067049-59067068 None:intergenic 50.0%
CTTAGCTTAGCCAAGGTCCT+TGG - chr8_1:59067047-59067066 Msa1203860:intron 50.0%
TTGGATCGAACCAAGGACCT+TGG + chr8_1:59067060-59067079 None:intergenic 50.0%
CTCAAGGTTGGATCGAACCA+AGG + chr8_1:59067067-59067086 None:intergenic 50.0%
CATTGCTGCATGCTCAAGGT+TGG + chr8_1:59067079-59067098 None:intergenic 50.0%
GCAGAGTTTGCCGCCTATTT+GGG - chr8_1:59067112-59067131 Msa1203860:intron 50.0%
GACTAATCTCTCGAGCCTTG+TGG + chr8_1:59067140-59067159 None:intergenic 50.0%
ACAGCTAACGTTGGGACAGT+TGG - chr8_1:59067478-59067497 Msa1203860:intron 50.0%
GAAGGCGAAACCATGTCATC+CGG + chr8_1:59067514-59067533 None:intergenic 50.0%
GCAGACGATGGAAGTAAGGT+AGG - chr8_1:59067897-59067916 Msa1203860:CDS 50.0%
! GACCTATTGGTTGGAGCAGA+TGG - chr8_1:59068088-59068107 Msa1203860:CDS 50.0%
CAAACGGAAGCTGTTTACGC+CGG - chr8_1:59068601-59068620 Msa1203860:CDS 50.0%
!! GGGAAGGTACCGAGTATTCT+TGG - chr8_1:59068793-59068812 Msa1203860:intron 50.0%
TTGGAGGCGGAAAGATGCAA+TGG - chr8_1:59068846-59068865 Msa1203860:intron 50.0%
GCGTTTCACAAAGAAGCTCC+CGG - chr8_1:59068872-59068891 Msa1203860:intron 50.0%
TTTCACAAAGAAGCTCCCGG+TGG - chr8_1:59068875-59068894 Msa1203860:intron 50.0%
ATTCGGTTCATCAGCACCAC+CGG + chr8_1:59068894-59068913 None:intergenic 50.0%
CAGAATGGCCTCTTCATCTG+TGG + chr8_1:59069090-59069109 None:intergenic 50.0%
GTAGATGTCTCGTCGCAGAA+TGG + chr8_1:59069105-59069124 None:intergenic 50.0%
CCATATTTGGCTGCATGGCA+TGG + chr8_1:59069187-59069206 None:intergenic 50.0%
CCATGCCATGCAGCCAAATA+TGG - chr8_1:59069184-59069203 Msa1203860:intron 50.0%
TTGGCCCATATTTGGCTGCA+TGG + chr8_1:59069192-59069211 None:intergenic 50.0%
ATGCAGCCAAATATGGGCCA+AGG - chr8_1:59069191-59069210 Msa1203860:intron 50.0%
CATCCTCCTTGGCCCATATT+TGG + chr8_1:59069200-59069219 None:intergenic 50.0%
! ACGAGACATGATGACGACTC+AGG + chr8_1:59069260-59069279 None:intergenic 50.0%
GCTTACACCTAACGGAATGG+TGG - chr8_1:59069605-59069624 Msa1203860:CDS 50.0%
! AGGTTGATTCAGCCCTAAGG+AGG - chr8_1:59069855-59069874 Msa1203860:intron 50.0%
TCTAGTGTCTGACACGACAC+TGG - chr8_1:59069998-59070017 Msa1203860:intron 50.0%
!! AGGTGTTGGTCTTGGTCCTT+TGG - chr8_1:59070335-59070354 Msa1203860:CDS 50.0%
!! TGTTGGTCTTGGTCCTTTGG+AGG - chr8_1:59070338-59070357 Msa1203860:CDS 50.0%
CTCATCCTGGAAGAGTTGGA+GGG - chr8_1:59070487-59070506 Msa1203860:intron 50.0%
TGATGCCGTCTATGTTGAGC+TGG - chr8_1:59070529-59070548 Msa1203860:CDS 50.0%
ATGTTGAGCTGGATCTTGGG+TGG - chr8_1:59070540-59070559 Msa1203860:CDS 50.0%
GCTGGATCTTGGGTGGAAAT+AGG - chr8_1:59070547-59070566 Msa1203860:CDS 50.0%
TCCGAGAGCCTGCAACTTAT+TGG + chr8_1:59070679-59070698 None:intergenic 50.0%
AGACCTGTTTCCTCTCCACA+TGG + chr8_1:59071016-59071035 None:intergenic 50.0%
GTAGGCATACCCGATTATGC+AGG + chr8_1:59071077-59071096 None:intergenic 50.0%
CAGGGTAATTTGGAGGAACC+CGG + chr8_1:59071607-59071626 None:intergenic 50.0%
ACACGAGCAGGGTAATTTGG+AGG + chr8_1:59071614-59071633 None:intergenic 50.0%
TGGACACGAGCAGGGTAATT+TGG + chr8_1:59071617-59071636 None:intergenic 50.0%
TCATCCTTCTTCGCGATGCT+TGG + chr8_1:59071818-59071837 None:intergenic 50.0%
GCTACATACACTGCCTTCCA+TGG + chr8_1:59072056-59072075 None:intergenic 50.0%
!! CTTGTAGCGGGTGGTGGAAT+TGG - chr8_1:59066558-59066577 Msa1203860:exon 55.0%
!! GGGTGGTGGAATTGGTGGAT+TGG - chr8_1:59066566-59066585 Msa1203860:exon 55.0%
GAGTGCCCTTAGCTTAGCCA+AGG - chr8_1:59067040-59067059 Msa1203860:intron 55.0%
GGCAGAGTTTGCCGCCTATT+TGG - chr8_1:59067111-59067130 Msa1203860:intron 55.0%
CCTTGTGGGACCCAAATAGG+CGG + chr8_1:59067125-59067144 None:intergenic 55.0%
! GAGCCTTGTGGGACCCAAAT+AGG + chr8_1:59067128-59067147 None:intergenic 55.0%
TCAAAGCCAGCCGACCAAAG+AGG + chr8_1:59067551-59067570 None:intergenic 55.0%
TTCACTCCTGCAGTGGAACG+TGG - chr8_1:59067771-59067790 Msa1203860:intron 55.0%
TGCAGTGGAACGTGGTCTTC+CGG - chr8_1:59067779-59067798 Msa1203860:intron 55.0%
CTTCTCCAACTGCACGAGCA+AGG + chr8_1:59067842-59067861 None:intergenic 55.0%
TTCGGTTCATCAGCACCACC+GGG + chr8_1:59068893-59068912 None:intergenic 55.0%
CAGCCAAATATGGGCCAAGG+AGG - chr8_1:59069194-59069213 Msa1203860:intron 55.0%
TATGGGCCAAGGAGGATGCA+TGG - chr8_1:59069202-59069221 Msa1203860:intron 55.0%
CAATGGCCATGCATCCTCCT+TGG + chr8_1:59069211-59069230 None:intergenic 55.0%
AGGAGGATGCATGGCCATTG+AGG - chr8_1:59069211-59069230 Msa1203860:CDS 55.0%
! GGCTAGAATGGCAGCTCTGA+TGG - chr8_1:59070290-59070309 Msa1203860:intron 55.0%
! GGTCTTGGTCCTTTGGAGGT+AGG - chr8_1:59070342-59070361 Msa1203860:CDS 55.0%
CCTCCAACTCTTCCAGGATG+AGG + chr8_1:59070489-59070508 None:intergenic 55.0%
CCTCATCCTGGAAGAGTTGG+AGG - chr8_1:59070486-59070505 Msa1203860:intron 55.0%
ATCCTGGAAGAGTTGGAGGG+AGG - chr8_1:59070490-59070509 Msa1203860:intron 55.0%
AACCTCCCTCCAACTCTTCC+AGG + chr8_1:59070495-59070514 None:intergenic 55.0%
! TTGCAGGAGTGCAGTGCAAG+AGG - chr8_1:59071249-59071268 Msa1203860:intron 55.0%
! TGCAGGAGTGCAGTGCAAGA+GGG - chr8_1:59071250-59071269 Msa1203860:intron 55.0%
TGCGGAGTGAACATGGCACT+TGG - chr8_1:59071463-59071482 Msa1203860:intron 55.0%
CATATGGGTGGACACGAGCA+GGG + chr8_1:59071625-59071644 None:intergenic 55.0%
TCATATGGGTGGACACGAGC+AGG + chr8_1:59071626-59071645 None:intergenic 55.0%
CTTCTTCGCGATGCTTGGAG+CGG + chr8_1:59071813-59071832 None:intergenic 55.0%
! CTTAGGGTGCTTGTAGCGGG+TGG - chr8_1:59066549-59066568 Msa1203860:three_prime_UTR 60.0%
!! GTAGCGGGTGGTGGAATTGG+TGG - chr8_1:59066561-59066580 Msa1203860:exon 60.0%
CCGCCTATTTGGGTCCCACA+AGG - chr8_1:59067122-59067141 Msa1203860:intron 60.0%
GGAAGACCACGTTCCACTGC+AGG + chr8_1:59067780-59067799 None:intergenic 60.0%
GGGATCCTTGCTCGTGCAGT+TGG - chr8_1:59067834-59067853 Msa1203860:intron 60.0%
!! AGGCACTGACATGCCGACAC+CGG + chr8_1:59070068-59070087 None:intergenic 60.0%
GCGTGCGCGCCAATTGAGAA+GGG + chr8_1:59071171-59071190 None:intergenic 60.0%
! GCAGGAGTGCAGTGCAAGAG+GGG - chr8_1:59071251-59071270 Msa1203860:intron 60.0%
! CAGGAGTGCAGTGCAAGAGG+GGG - chr8_1:59071252-59071271 Msa1203860:intron 60.0%
! CGCTCCAAGCATCGCGAAGA+AGG - chr8_1:59071811-59071830 Msa1203860:CDS 60.0%
!! AGGGTGCTTGTAGCGGGTGG+TGG - chr8_1:59066552-59066571 Msa1203860:three_prime_UTR 65.0%
CGCGTGCGCGCCAATTGAGA+AGG + chr8_1:59071172-59071191 None:intergenic 65.0%
GCAGTGCAAGAGGGGGATCC+AGG - chr8_1:59071259-59071278 Msa1203860:intron 65.0%
AGTCTCTGCCGTTGCGCGCG+CGG - chr8_1:59067156-59067175 Msa1203860:CDS 70.0%
GGTATCCTCCGCGCGCGCAA+CGG + chr8_1:59067167-59067186 None:intergenic 70.0%
! CTCTGCCGTTGCGCGCGCGG+AGG - chr8_1:59067159-59067178 Msa1203860:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 59066052 59072385 59066052 ID=Msa1203860;Name=Msa1203860
chr8_1 mRNA 59066052 59072385 59066052 ID=Msa1203860-mRNA-1;Parent=Msa1203860;Name=Msa1203860-mRNA-1;_AED=0.12;_eAED=0.12;_QI=257|1|1|1|0.93|0.88|17|489|663
chr8_1 exon 59066052 59066480 59066052 ID=Msa1203860-mRNA-1:exon:19098;Parent=Msa1203860-mRNA-1
chr8_1 exon 59066515 59066655 59066515 ID=Msa1203860-mRNA-1:exon:19097;Parent=Msa1203860-mRNA-1
chr8_1 exon 59066767 59066851 59066767 ID=Msa1203860-mRNA-1:exon:19096;Parent=Msa1203860-mRNA-1
chr8_1 exon 59066944 59067032 59066944 ID=Msa1203860-mRNA-1:exon:19095;Parent=Msa1203860-mRNA-1
chr8_1 exon 59067128 59067182 59067128 ID=Msa1203860-mRNA-1:exon:19094;Parent=Msa1203860-mRNA-1
chr8_1 exon 59067351 59067437 59067351 ID=Msa1203860-mRNA-1:exon:19093;Parent=Msa1203860-mRNA-1
chr8_1 exon 59067538 59067602 59067538 ID=Msa1203860-mRNA-1:exon:19092;Parent=Msa1203860-mRNA-1
chr8_1 exon 59067735 59067780 59067735 ID=Msa1203860-mRNA-1:exon:19091;Parent=Msa1203860-mRNA-1
chr8_1 exon 59067869 59067972 59067869 ID=Msa1203860-mRNA-1:exon:19090;Parent=Msa1203860-mRNA-1
chr8_1 exon 59068078 59068192 59068078 ID=Msa1203860-mRNA-1:exon:19089;Parent=Msa1203860-mRNA-1
chr8_1 exon 59068561 59068652 59068561 ID=Msa1203860-mRNA-1:exon:19088;Parent=Msa1203860-mRNA-1
chr8_1 exon 59069205 59069416 59069205 ID=Msa1203860-mRNA-1:exon:19087;Parent=Msa1203860-mRNA-1
chr8_1 exon 59069523 59069638 59069523 ID=Msa1203860-mRNA-1:exon:19086;Parent=Msa1203860-mRNA-1
chr8_1 exon 59069757 59069857 59069757 ID=Msa1203860-mRNA-1:exon:19085;Parent=Msa1203860-mRNA-1
chr8_1 exon 59070314 59070388 59070314 ID=Msa1203860-mRNA-1:exon:19084;Parent=Msa1203860-mRNA-1
chr8_1 exon 59070523 59070685 59070523 ID=Msa1203860-mRNA-1:exon:19083;Parent=Msa1203860-mRNA-1
chr8_1 exon 59071623 59072385 59071623 ID=Msa1203860-mRNA-1:exon:19082;Parent=Msa1203860-mRNA-1
chr8_1 five_prime_UTR 59072129 59072385 59072129 ID=Msa1203860-mRNA-1:five_prime_utr;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59071623 59072128 59071623 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59070523 59070685 59070523 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59070314 59070388 59070314 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59069757 59069857 59069757 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59069523 59069638 59069523 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59069205 59069416 59069205 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59068561 59068652 59068561 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59068078 59068192 59068078 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59067869 59067972 59067869 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59067735 59067780 59067735 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59067538 59067602 59067538 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59067351 59067437 59067351 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59067128 59067182 59067128 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59066944 59067032 59066944 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59066767 59066851 59066767 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 CDS 59066575 59066655 59066575 ID=Msa1203860-mRNA-1:cds;Parent=Msa1203860-mRNA-1
chr8_1 three_prime_UTR 59066515 59066574 59066515 ID=Msa1203860-mRNA-1:three_prime_utr;Parent=Msa1203860-mRNA-1
chr8_1 three_prime_UTR 59066052 59066480 59066052 ID=Msa1203860-mRNA-1:three_prime_utr;Parent=Msa1203860-mRNA-1
Gene Sequence

>Msa1203860

ATGGCTGCTACCTTATGTTACAACTCATTGAATCCATCTACAGCATCTTTCTCAAGAACCCTTTTCTCAATTCCCACAAACAAAGACTTTTCATTGGAAAACACTTCATCTTTTCATAGCTATGGAAAAAACAGAGCAAAAAAACAGAGGAAGAATGTGTTTATGATGCATGTGAAAGTTAAAGCTACTGTAGCTGAAGCTACTGCACCACCTTCTTCAAAACAAGGTGAGAAGAAGAATCTTAGGGTGCTTGTAGCGGGTGGTGGAATTGGTGGATTGGTTTTTGCTTTGGCTGCAAAGAGAAAAGGATTTGAAGTGATGGTGTTTGAGAAAGATTTGAGTGCTGTGAGAGGAGAGGGACAGTATAGAGGTCCTATTCAGATACAGAGTAATGCTTTGGCTGCTTTGGAAGCTATTGATTCAGATGTTGCTGATGAAGTTATGAGAGTTGGTTGTATTACTGGTGATAGAATTAATGGTCTTGTTGATGGAGTTTCTGGTTCTTGGTACGTTAAGTTTGATACATTCACTCCTGCAGTGGAACGTGGTCTTCCGGTCACAAGAGTTATTAGCCGAATGACTTTGCAAGGGATCCTTGCTCGTGCAGTTGGAGAAGATATTGTTCTGAATGCCAGTAATGTCGTTAATTTCGCAGACGATGGAAGTAAGGTAACAGTAGAGCTCGAGAATGGTCAAAAATATGAAGGAGACCTATTGGTTGGAGCAGATGGTATATGGTCCAAGGTCAGGACACAGTTATTTGGACAAACGGAAGCTGTTTACGCCGGCTATACTTGTTATACCGGTATTGCAGATTTTGTGCCTGCTGACATTGAATCTGTTGGGTACCGAGTATTCTTGGGACACAAACAATACTTTGTATCTTCAGATGTTGGAGGCGGAAAGATGCAATGGTATGCGTTTCACAAAGAAGCTCCCGGTGGTGCTGATGAACCGAATAAAAAAAAGGAAAGGTTGCTCAAGATATTTAAGGGCTGGTGTGATAATACGATAGATCTCATACTTGCCACAGATGAAGAGGCCATTCTGCGACGAGACATCTACGACAGAATACCGACATTTAAATGGGGAAAGGGTCGTGTTACTTTGCTTGGTGATTCAGTCCATGCCATGCAGCCAAATATGGGCCAAGGAGGATGCATGGCCATTGAGGACAGTTATCAACTTGCAAAGGAGTTGGACAATGCATGGGAACAAAGTATTAAATCAGGGAACCCAATTAAGGTTGATTCAGCCCTAAGGAGCTATGAAAGTGAAAGAAAACTGCGAGTTGCAGTTATTCACGGGATGGCTAGAATGGCAGCTCTGATGGCTTCCACTTACAAGGCATATCTAGGTGTTGGTCTTGGTCCTTTGGAGTTTTTGACCAACTTTCGCATACCTCATCCTGGAAGAGTTGGAGGGAGGTTTTTTGTCGACATTTTGATGCCGTCTATGTTGAGCTGGATCTTGGGTGGAAATAGTGACAAACTTGAAGGTAGACCAATAAGTTGCAGGCTCTCGGACAAAGCAAATGGACAACTACGCCAATGGTTTGAAGATGATGATGCACTTGAGCGTGCTATTAACGGAGAGTGGTTTTTATTACCATGTGGAGAGGAAACAGGTCTTTCAAAACCGATACGTTTAACACAAAATGAGATGAAACCCTGCATAATCGGGAGTGCAGTGCAAGAGGGGGATCCAGGTAGCTCAATTACAATTACTTCACCCAAGGTTTCTCCAACGCATGCTCGAATTTACTACAAGGATGGAGCCTTCTTCGTAACTGATATGCGGAGTGAACATGGCACTTGGATCGCCGATATTGAAGGAAAGCGATACCGGGTTCCTCCAAATTACCCTGCTCGTGTCCACCCATATGATGTTCTTCAGTTTGGTTCTGAGAAGGTTTCATTTCGAGTTAAGGTGAAAAGTTCCGCTCCAAGCATCGCGAAGAAGGATGAGACACAAGTTTTGCTGCAAGTATGA

Protein sequence

>Msa1203860

MAATLCYNSLNPSTASFSRTLFSIPTNKDFSLENTSSFHSYGKNRAKKQRKNVFMMHVKVKATVAEATAPPSSKQGEKKNLRVLVAGGGIGGLVFALAAKRKGFEVMVFEKDLSAVRGEGQYRGPIQIQSNALAALEAIDSDVADEVMRVGCITGDRINGLVDGVSGSWYVKFDTFTPAVERGLPVTRVISRMTLQGILARAVGEDIVLNASNVVNFADDGSKVTVELENGQKYEGDLLVGADGIWSKVRTQLFGQTEAVYAGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHKEAPGGADEPNKKKERLLKIFKGWCDNTIDLILATDEEAILRRDIYDRIPTFKWGKGRVTLLGDSVHAMQPNMGQGGCMAIEDSYQLAKELDNAWEQSIKSGNPIKVDSALRSYESERKLRVAVIHGMARMAALMASTYKAYLGVGLGPLEFLTNFRIPHPGRVGGRFFVDILMPSMLSWILGGNSDKLEGRPISCRLSDKANGQLRQWFEDDDALERAINGEWFLLPCGEETGLSKPIRLTQNEMKPCIIGSAVQEGDPGSSITITSPKVSPTHARIYYKDGAFFVTDMRSEHGTWIADIEGKRYRVPPNYPARVHPYDVLQFGSEKVSFRVKVKSSAPSIAKKDETQVLLQV*