AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0275160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275160 MtrunA17_Chr2g0287061 97.766 761 14 1 12 769 1 761 0.0 1555
Msa0275160 MtrunA17_Chr5g0448761 37.043 629 342 13 189 765 58 684 3.59e-131 408
Msa0275160 MtrunA17_Chr5g0448511 43.213 442 240 6 334 765 16 456 7.66e-123 379
Msa0275160 MtrunA17_Chr1g0202341 35.191 628 349 13 189 765 49 669 3.48e-122 382
Msa0275160 MtrunA17_Chr5g0440451 36.597 623 345 11 190 765 42 661 7.28e-121 385
Msa0275160 MtrunA17_Chr5g0440451 37.778 90 56 0 39 128 42 131 4.14e-12 70.1
Msa0275160 MtrunA17_Chr6g0458391 31.275 745 429 16 7 708 60 764 2.87e-110 353
Msa0275160 MtrunA17_Chr6g0458391 29.480 173 96 4 130 279 22 191 1.17e-15 81.3
Msa0275160 MtrunA17_Chr3g0118611 40.899 445 253 7 329 766 118 559 5.05e-102 331
Msa0275160 MtrunA17_Chr1g0207551 34.392 567 329 8 183 709 26 589 3.07e-100 327
Msa0275160 MtrunA17_Chr2g0329031 33.608 607 366 11 190 764 13 614 6.26e-97 317
Msa0275160 MtrunA17_Chr2g0291581 32.125 607 374 12 191 761 71 675 9.22e-97 315
Msa0275160 MtrunA17_Chr2g0291581 32.759 116 68 2 22 128 54 168 4.61e-11 66.2
Msa0275160 MtrunA17_Chr3g0080351 30.372 619 370 13 189 763 74 675 4.81e-89 298
Msa0275160 MtrunA17_Chr5g0441581 31.598 557 344 10 186 707 27 581 2.07e-88 293
Msa0275160 MtrunA17_Chr8g0363841 31.690 568 338 13 192 713 18 581 1.14e-83 280
Msa0275160 MtrunA17_Chr1g0203721 29.660 617 381 11 193 760 65 677 9.35e-82 279
Msa0275160 MtrunA17_Chr1g0203721 38.776 98 47 1 42 126 65 162 1.27e-11 68.6
Msa0275160 MtrunA17_Chr2g0324011 29.597 571 352 14 190 715 9 574 1.73e-79 266
Msa0275160 MtrunA17_Chr2g0324011 36.036 111 53 4 35 130 5 112 7.92e-11 65.5
Msa0275160 MtrunA17_Chr2g0296781 31.504 565 320 15 197 707 3 554 1.08e-77 265
Msa0275160 MtrunA17_Chr2g0291591 30.970 536 316 11 134 627 16 539 2.17e-76 257
Msa0275160 MtrunA17_Chr1g0203051 28.870 575 351 15 165 696 62 621 3.16e-75 256
Msa0275160 MtrunA17_Chr6g0477261 36.387 393 223 8 334 707 59 443 1.91e-74 254
Msa0275160 MtrunA17_Chr1g0196541 29.550 555 342 14 197 706 3 553 4.26e-71 247
Msa0275160 MtrunA17_Chr3g0082121 28.896 616 384 18 191 763 43 647 1.26e-70 245
Msa0275160 MtrunA17_Chr2g0287651 28.325 579 324 14 196 709 80 632 5.50e-68 241
Msa0275160 MtrunA17_Chr2g0276841 26.270 571 352 14 191 706 70 626 1.34e-57 209
Msa0275160 MtrunA17_Chr1g0198761 28.697 568 342 15 192 704 48 607 2.91e-57 209
Msa0275160 MtrunA17_Chr2g0294841 26.003 573 365 13 184 704 38 603 4.20e-51 191
Msa0275160 MtrunA17_Chr2g0290391 26.943 579 345 16 189 706 49 610 1.20e-49 186
Msa0275160 MtrunA17_Chr5g0431001 27.314 443 248 13 173 552 40 471 1.01e-39 154
Msa0275160 MtrunA17_Chr1g0164591 32.231 242 155 5 312 547 72 310 1.10e-39 149
Msa0275160 MtrunA17_Chr7g0258861 31.058 293 162 8 190 443 9 300 8.06e-31 123
Msa0275160 MtrunA17_Chr7g0258861 34.286 105 54 2 40 130 10 113 3.33e-11 65.1
Msa0275160 MtrunA17_Chr2g0308841 27.232 224 156 4 490 708 5 226 3.52e-23 100
Msa0275160 MtrunA17_Chr4g0033611 43.119 109 50 1 190 286 75 183 6.01e-23 99.0
Msa0275160 MtrunA17_Chr4g0033611 33.333 150 70 3 39 161 75 221 2.92e-16 79.3
Msa0275160 MtrunA17_Chr2g0329421 41.284 109 52 1 190 286 26 134 2.78e-22 95.9
Msa0275160 MtrunA17_Chr2g0329421 41.176 102 48 1 39 128 26 127 4.41e-18 83.6
Msa0275160 MtrunA17_Chr2g0329361 36.735 147 67 3 37 163 58 198 3.80e-19 87.8
Msa0275160 MtrunA17_Chr2g0329361 33.019 106 56 1 189 279 59 164 2.34e-13 70.9
Msa0275160 MtrunA17_Chr7g0233911 40.541 111 52 1 39 135 33 143 6.61e-19 86.3
Msa0275160 MtrunA17_Chr7g0233911 44.231 104 44 2 190 279 33 136 7.60e-18 83.2
Msa0275160 MtrunA17_Chr3g0078041 35.659 129 69 1 190 304 49 177 4.40e-18 84.3
Msa0275160 MtrunA17_Chr3g0078041 39.423 104 49 1 39 128 49 152 4.70e-18 84.0
Msa0275160 MtrunA17_Chr1g0149131 26.957 115 81 1 434 545 1 115 1.84e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0275160 AT3G06250.2 59.792 771 290 9 12 769 1 764 0.0 929
Msa0275160 AT3G06250.1 59.792 771 290 9 12 769 1 764 0.0 929
Msa0275160 AT3G06250.3 59.792 771 290 9 12 769 1 764 0.0 929
Msa0275160 AT5G18960.2 56.599 788 313 10 5 769 7 788 0.0 890
Msa0275160 AT5G18960.1 56.599 788 313 10 5 769 7 788 0.0 890
Msa0275160 AT4G38180.1 36.320 625 348 11 189 765 71 693 2.74e-129 404
Msa0275160 AT4G38180.1 33.974 156 78 4 31 169 63 210 3.40e-14 77.0
Msa0275160 AT2G27110.2 37.420 628 363 12 160 765 16 635 5.11e-122 387
Msa0275160 AT2G27110.1 37.420 628 363 12 160 765 16 635 5.11e-122 387
Msa0275160 AT2G27110.3 40.870 460 257 6 319 765 33 490 4.90e-108 346
Msa0275160 AT4G15090.1 32.899 614 366 10 189 760 49 658 3.05e-106 344
Msa0275160 AT4G15090.5 32.899 614 366 10 189 760 49 658 3.05e-106 344
Msa0275160 AT4G15090.3 32.899 614 366 10 189 760 49 658 3.05e-106 344
Msa0275160 AT4G15090.2 32.899 614 366 10 189 760 49 658 3.05e-106 344
Msa0275160 AT4G15090.4 32.899 614 366 10 189 760 49 658 3.05e-106 344
Msa0275160 AT4G38170.1 40.136 441 252 7 334 766 21 457 3.11e-104 331
Msa0275160 AT1G52520.1 32.846 615 369 14 191 765 85 695 3.92e-100 325
Msa0275160 AT1G52520.1 29.530 149 90 3 40 176 85 230 7.66e-11 66.2
Msa0275160 AT3G22170.2 31.240 605 367 10 189 755 68 661 8.13e-100 327
Msa0275160 AT3G22170.1 31.240 605 367 10 189 755 68 661 8.13e-100 327
Msa0275160 AT1G76320.3 33.759 548 326 10 196 710 2 545 9.58e-90 296
Msa0275160 AT1G76320.1 33.759 548 326 10 196 710 2 545 7.23e-89 295
Msa0275160 AT1G76320.4 33.759 548 326 10 196 710 2 545 7.23e-89 295
Msa0275160 AT1G76320.2 33.759 548 326 10 196 710 2 545 7.60e-89 295
Msa0275160 AT2G32250.5 31.852 540 322 8 194 710 41 557 7.31e-86 288
Msa0275160 AT2G32250.2 31.852 540 322 8 194 710 41 557 2.13e-85 288
Msa0275160 AT2G32250.4 31.852 540 322 8 194 710 41 557 2.13e-85 288
Msa0275160 AT2G32250.6 31.852 540 322 8 194 710 41 557 2.26e-85 288
Msa0275160 AT2G32250.1 31.852 540 322 8 194 710 41 557 2.26e-85 288
Msa0275160 AT2G32250.3 31.852 540 322 8 194 710 41 557 2.26e-85 288
Msa0275160 AT2G32250.7 31.784 538 321 8 196 710 2 516 5.25e-85 286
Msa0275160 AT2G32250.8 31.784 538 321 8 196 710 2 516 6.58e-85 286
Msa0275160 AT1G80010.1 28.708 627 391 12 191 765 95 717 1.75e-84 283
Msa0275160 AT1G80010.1 31.579 114 69 1 27 131 82 195 2.11e-11 68.2
Msa0275160 AT4G19990.3 29.244 595 361 11 179 734 15 588 6.17e-76 261
Msa0275160 AT4G19990.4 29.244 595 361 11 179 734 15 588 6.17e-76 261
Msa0275160 AT4G19990.7 29.244 595 361 11 179 734 29 602 6.55e-76 261
Msa0275160 AT4G19990.5 29.244 595 361 11 179 734 15 588 6.57e-76 261
Msa0275160 AT4G19990.6 29.244 595 361 11 179 734 15 588 1.50e-75 260
Msa0275160 AT4G19990.2 29.244 595 361 11 179 734 15 588 1.50e-75 260
Msa0275160 AT4G19990.1 30.200 500 321 8 248 734 47 531 4.25e-68 238
Msa0275160 AT5G28530.1 28.970 573 337 14 191 704 55 616 5.08e-59 213
Msa0275160 AT5G28530.3 28.621 573 335 14 191 704 55 612 5.17e-59 213
Msa0275160 AT5G28530.2 28.621 573 335 14 191 704 55 612 5.17e-59 213
Msa0275160 AT1G10240.2 27.634 579 350 15 183 706 40 604 5.14e-58 210
Msa0275160 AT1G10240.1 27.634 579 350 15 183 706 40 604 5.14e-58 210
Msa0275160 AT5G28530.4 25.741 540 334 13 191 704 55 553 2.05e-45 173
Msa0275160 AT5G28530.5 25.370 540 332 13 191 704 55 549 2.51e-45 172
Msa0275160 AT3G59470.3 46.789 109 46 1 190 286 69 177 6.50e-24 102
Msa0275160 AT3G59470.3 34.161 161 73 3 25 159 62 215 4.69e-19 87.8
Msa0275160 AT3G59470.1 46.789 109 46 1 190 286 69 177 6.50e-24 102
Msa0275160 AT3G59470.1 34.161 161 73 3 25 159 62 215 4.69e-19 87.8
Msa0275160 AT3G59470.2 46.789 109 46 1 190 286 81 189 7.73e-24 102
Msa0275160 AT3G59470.2 34.161 161 73 3 25 159 74 227 5.82e-19 87.8
Msa0275160 AT3G07500.1 38.532 109 54 1 184 279 26 134 3.81e-19 87.4
Msa0275160 AT3G07500.1 39.806 103 49 1 39 128 32 134 3.51e-16 78.6
Msa0275160 AT4G12850.4 42.574 101 48 1 39 129 10 110 1.99e-18 82.8
Msa0275160 AT4G12850.4 42.982 114 52 2 190 290 10 123 6.22e-18 81.6
Msa0275160 AT4G12850.2 40.909 110 52 2 30 129 4 110 2.57e-18 82.4
Msa0275160 AT4G12850.2 44.000 100 46 1 190 279 10 109 1.36e-17 80.5
Msa0275160 AT4G12850.1 42.574 101 48 1 39 129 10 110 2.64e-18 84.0
Msa0275160 AT4G12850.1 38.028 142 62 3 190 311 10 145 5.33e-18 83.2
Msa0275160 AT2G43280.1 39.815 108 51 1 35 128 17 124 5.16e-18 84.0
Msa0275160 AT2G43280.1 36.364 132 70 2 189 306 20 151 3.94e-16 78.2
Msa0275160 AT2G43280.2 33.835 133 74 1 55 173 2 134 2.49e-14 72.0
Msa0275160 AT2G43280.2 36.522 115 59 2 206 306 2 116 1.94e-13 69.7

Find 165 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATTGCATGAGCATATTT+TGG 0.147366 2_3:+7175317 Msa0275160:CDS
CTGGGTTCCGTTCTATTTAA+AGG 0.153193 2_3:+7175837 Msa0275160:CDS
TTCTTTGGTGGAAGTTTAAA+TGG 0.183946 2_3:+7175904 Msa0275160:CDS
TGGTGAATGGCGACATATTT+AGG 0.203007 2_3:+7175158 Msa0275160:CDS
AGGGTTCAGTTAAATGATTC+TGG 0.241282 2_3:+7174563 Msa0275160:CDS
CATGCAGCATACTTGGGTTT+TGG 0.249061 2_3:+7174875 Msa0275160:CDS
CACAAGCAACCTGTGCTTCT+TGG 0.254421 2_3:+7175457 Msa0275160:CDS
GGCAATAGCAAAAGTCTTTC+CGG 0.278519 2_3:+7175603 Msa0275160:CDS
TTGCAGTGCTTTAGTTATCT+TGG 0.278930 2_3:+7176114 Msa0275160:CDS
TGAGAGAGAAATAGTGGAAT+TGG 0.284495 2_3:-7173877 None:intergenic
AAAAGGAAGGTAGTAGGATT+TGG 0.292832 2_3:+7174254 Msa0275160:intron
CCATGCTCATGCAGCATACT+TGG 0.293439 2_3:+7174868 Msa0275160:CDS
CTTTATCGATCGAGAACTAA+TGG 0.295969 2_3:+7174461 Msa0275160:CDS
GATTCCATGCTTTCTTTCAT+AGG 0.296754 2_3:-7175880 None:intergenic
GTAGAAGACTCGATAGCTTT+TGG 0.308596 2_3:-7174668 None:intergenic
ATAACACCAAAGGGAGAAAT+AGG 0.311248 2_3:-7174743 None:intergenic
GAAAGCATGGAATCATTCTT+TGG 0.319532 2_3:+7175889 Msa0275160:CDS
GGTGAACCTATTTCTCCCTT+TGG 0.320761 2_3:+7174737 Msa0275160:CDS
TTCATCAATGCTTCAATTCC+AGG 0.329107 2_3:+7173917 Msa0275160:exon
GAGAGAGAAATAGTGGAATT+GGG 0.339020 2_3:-7173876 None:intergenic
TATGCCATGGAAGTTGATAA+TGG 0.354230 2_3:+7175295 Msa0275160:CDS
TGGGTTCCGTTCTATTTAAA+GGG 0.358637 2_3:+7175838 Msa0275160:CDS
GAATTGAAGCATTGATGAAT+TGG 0.360557 2_3:-7173913 None:intergenic
CTGCATGAGCATGGTAAAAT+TGG 0.364754 2_3:-7174859 None:intergenic
TAAAATTGGTAGGCTTCATT+AGG 0.371960 2_3:-7174845 None:intergenic
ATCGAATGGGATTTAAAGTT+CGG 0.379216 2_3:+7174429 Msa0275160:CDS
TAGTGGAATTGGGGACAAAT+AGG 0.380206 2_3:-7173866 None:intergenic
AAAGGAAGGTAGTAGGATTT+GGG 0.381236 2_3:+7174255 Msa0275160:intron
AAAAGATCATAATCATGATC+TGG 0.383971 2_3:+7175063 Msa0275160:CDS
ATATAGAAAGAGTGTTTATA+TGG 0.389131 2_3:+7175402 Msa0275160:CDS
CTGGTTGTCCAGCATTCATA+AGG 0.391197 2_3:+7174543 Msa0275160:CDS
AGTGCTGTACTCGTCAAATA+TGG 0.393973 2_3:+7175766 Msa0275160:CDS
CGCTTTGTGTGCTCAAAAGA+AGG 0.394545 2_3:+7174953 Msa0275160:CDS
AGGGTCCCTCAGCAGATATT+TGG 0.395130 2_3:+7176155 Msa0275160:CDS
CATAATCATGATCTGGGCCT+TGG 0.409497 2_3:+7175070 Msa0275160:CDS
CCACAACGAAAAGCGATGAT+TGG 0.412913 2_3:-7175629 None:intergenic
TCGCCGGTCTGATGGGTAAT+GGG 0.413317 2_3:+7175677 Msa0275160:CDS
GCCTTACAGCCAACTCTTGA+AGG 0.417533 2_3:-7174986 None:intergenic
CGTCAAATTCATCGACTGTC+TGG 0.424860 2_3:-7175735 None:intergenic
CTTCTGCACTGTTCTTCTAC+TGG 0.426641 2_3:-7176048 None:intergenic
CGAGGAGGTAAACACTGAAT+TGG 0.426954 2_3:+7175138 Msa0275160:CDS
TGGTAATGAGTAATGCAATT+GGG 0.428684 2_3:+7174315 Msa0275160:CDS
CCCTTCAAGAGTTGGCTGTA+AGG 0.428884 2_3:+7174985 Msa0275160:CDS
AGATACTCATGTAGTCAGTT+TGG 0.430685 2_3:+7175355 Msa0275160:CDS
ATTGATGAATTGGATTGAAA+TGG 0.432866 2_3:-7173903 None:intergenic
CTCGCCGGTCTGATGGGTAA+TGG 0.438659 2_3:+7175676 Msa0275160:CDS
AACTGAACCCTTATGAATGC+TGG 0.443026 2_3:-7174551 None:intergenic
TTCATTCCGCGTTATGAAAG+AGG 0.443774 2_3:+7175946 Msa0275160:CDS
TGTCTAGCTCCTCTTAGGAC+AGG 0.444148 2_3:-7175193 None:intergenic
GCTACAACTAATGTCAAGAT+TGG 0.453950 2_3:-7176232 None:intergenic
TGGAATTGAGAGAGAAATAG+TGG 0.454215 2_3:-7173883 None:intergenic
TTGTCTTACGTTCCGTTCCA+AGG 0.458529 2_3:-7175087 None:intergenic
CTGGTAATGAGTAATGCAAT+TGG 0.460733 2_3:+7174314 Msa0275160:CDS
ATATCTTATGGTAATCGAAT+GGG 0.462953 2_3:+7174416 Msa0275160:CDS
GAAAAGCGATGATTGGTTAC+CGG 0.465829 2_3:-7175622 None:intergenic
TTCTTTGTAGACACGTGTTG+AGG 0.466046 2_3:+7176280 Msa0275160:CDS
TAAGTGTGGAAATGATGATA+TGG 0.473912 2_3:+7176182 Msa0275160:CDS
AAAAGAAGAACTTGAAGTAC+AGG 0.474189 2_3:+7174784 Msa0275160:CDS
AGGATCATGGAGTAGCTCTC+AGG 0.475535 2_3:+7176395 Msa0275160:CDS
TCAAGGCAAGCAGAAGATAC+AGG 0.476103 2_3:+7175265 Msa0275160:CDS
GGATTTAAAATCTATGAAGA+AGG 0.480432 2_3:+7176135 Msa0275160:CDS
GAGTAATGCAATTGGGGAGG+AGG 0.480640 2_3:+7174322 Msa0275160:CDS
GCATCCTGTTGGTACTGAAC+TGG 0.481228 2_3:+7174295 Msa0275160:CDS
TTTATCGATCGAGAACTAAT+GGG 0.481588 2_3:+7174462 Msa0275160:CDS
AAAATCACATTAGAAGTGAT+TGG 0.484311 2_3:+7175215 Msa0275160:CDS
AGCCAACTCTTGAAGGGTGC+TGG 0.486059 2_3:-7174979 None:intergenic
AGGATTAAGAATCAACCATC+AGG 0.487093 2_3:+7175016 Msa0275160:CDS
TCACTTGGTTGTTTCAGACA+TGG 0.489216 2_3:+7175515 Msa0275160:CDS
ACCAACATATGGTTCGATCC+TGG 0.490539 2_3:-7174807 None:intergenic
CTGAACTCTTGACCAACATA+TGG 0.491150 2_3:-7174818 None:intergenic
GTTAAATGATTCTGGAAAGT+GGG 0.491161 2_3:+7174571 Msa0275160:CDS
ATTCATCGACTGTCTGGCTC+TGG 0.491387 2_3:-7175729 None:intergenic
CATCAGCTCAGTTCAAGAAC+TGG 0.495226 2_3:+7174524 Msa0275160:CDS
AGGAAGAAAATGCTTGAAGT+AGG 0.495697 2_3:+7174710 Msa0275160:CDS
CAAGAGCTCGCCGGTCTGAT+GGG 0.495940 2_3:+7175670 Msa0275160:CDS
TGAACTCTGTGAGAGGTGTT+TGG 0.496070 2_3:-7175927 None:intergenic
AGAATCAACCATCAGGAAAG+TGG 0.496214 2_3:+7175023 Msa0275160:CDS
GCCCTCTCGCAAAATCTCAT+AGG 0.498508 2_3:-7176508 None:intergenic
CAATTCAGTGTTTACCTCCT+CGG 0.500177 2_3:-7175137 None:intergenic
ATGGATTGAAGGACAATGCT+TGG 0.502036 2_3:+7175785 Msa0275160:CDS
CACTTGGTTGTTTCAGACAT+GGG 0.502099 2_3:+7175516 Msa0275160:CDS
AAAGATCATAATCATGATCT+GGG 0.502626 2_3:+7175064 Msa0275160:CDS
TTCCAGCACCCTTCAAGAGT+TGG 0.503277 2_3:+7174977 Msa0275160:CDS
AGTTAAATGATTCTGGAAAG+TGG 0.505016 2_3:+7174570 Msa0275160:CDS
ATTCCAACAAAAGTAGCAAA+TGG 0.506439 2_3:-7175427 None:intergenic
ACTCGTCAAATATGGATTGA+AGG 0.507225 2_3:+7175774 Msa0275160:CDS
CTACTCCATGATCCTATGTC+AGG 0.507285 2_3:-7176387 None:intergenic
ACAAGAGCTCGCCGGTCTGA+TGG 0.507295 2_3:+7175669 Msa0275160:CDS
TATATCTTATGGTAATCGAA+TGG 0.509718 2_3:+7174415 Msa0275160:CDS
ATTACCAGTTCAGTACCAAC+AGG 0.512740 2_3:-7174299 None:intergenic
ATCAAGATGTTTCAATCCAG+AGG 0.519473 2_3:+7175581 Msa0275160:CDS
GATAACTACCCTGTCCTAAG+AGG 0.520837 2_3:+7175184 Msa0275160:CDS
CATGCTCATGCAGCATACTT+GGG 0.521303 2_3:+7174869 Msa0275160:CDS
GTATGAGAAGCGTGCATCCT+GGG 0.521503 2_3:+7175819 Msa0275160:CDS
ATGGGATTTAAAGTTCGGAT+TGG 0.522097 2_3:+7174434 Msa0275160:CDS
GTTGTGGCAAATTAATGCAA+AGG 0.522725 2_3:+7175645 Msa0275160:CDS
CCTCAGCATTTCTTGTCCAT+CGG 0.524241 2_3:-7176353 None:intergenic
TACCTCCTCGGTCAAAATGT+TGG 0.526158 2_3:-7175125 None:intergenic
TTGGCTGTAAGGCTTATTTG+AGG 0.528311 2_3:+7174996 Msa0275160:CDS
AGATTTGTGTGTTCGAAGGA+GGG 0.530744 2_3:+7174500 Msa0275160:CDS
ATTACCATTATCAACTTCCA+TGG 0.531538 2_3:-7175299 None:intergenic
TCTTTGTAGACACGTGTTGA+GGG 0.535253 2_3:+7176281 Msa0275160:CDS
TTGAAATTAATAACACCAAA+GGG 0.535464 2_3:-7174752 None:intergenic
TTTCTTGTGATCCATACATA+GGG 0.536566 2_3:+7174354 Msa0275160:CDS
TGTATGAGAAGCGTGCATCC+TGG 0.538953 2_3:+7175818 Msa0275160:CDS
ATTTGGGATAATGATTGTAA+AGG 0.539019 2_3:+7174271 Msa0275160:CDS
GGAGAAAACTGTGTTGGCAC+AGG 0.543231 2_3:+7176532 Msa0275160:CDS
TCGGTCAAAATGTTGGAAGC+AGG 0.543963 2_3:-7175118 None:intergenic
TAGAAGATTTGTGTGTTCGA+AGG 0.548021 2_3:+7174496 Msa0275160:CDS
TCGTGAAGAAGAAAGAAAAG+AGG 0.548083 2_3:+7175981 Msa0275160:CDS
AGAGAGAAATAGTGGAATTG+GGG 0.548230 2_3:-7173875 None:intergenic
AAGATTTGTGTGTTCGAAGG+AGG 0.548897 2_3:+7174499 Msa0275160:CDS
GGAAGAAAATGCTTGAAGTA+GGG 0.553026 2_3:+7174711 Msa0275160:CDS
GCATCTAAATACATAGATGC+TGG 0.554139 2_3:+7176456 Msa0275160:CDS
TCGACTACCCACTTTCCTGA+TGG 0.556567 2_3:-7175031 None:intergenic
TGGTTGTCCAGCATTCATAA+GGG 0.557324 2_3:+7174544 Msa0275160:CDS
GTAAACACTGAATTGGTGAA+TGG 0.557824 2_3:+7175145 Msa0275160:CDS
GAAGCACAGGTTGCTTGTGG+TGG 0.561382 2_3:-7175453 None:intergenic
GTCTAGCTCCTCTTAGGACA+GGG 0.562105 2_3:-7175192 None:intergenic
TCATGATCTGGGCCTTGGAA+CGG 0.573122 2_3:+7175075 Msa0275160:CDS
GATTTAAAATCTATGAAGAA+GGG 0.574074 2_3:+7176136 Msa0275160:CDS
CCAAGTATGCTGCATGAGCA+TGG 0.574108 2_3:-7174868 None:intergenic
AATTCCTATGAAAGAAAGCA+TGG 0.575352 2_3:+7175876 Msa0275160:CDS
GGGTAAGAGCAATGTCAGGC+CGG 0.576033 2_3:+7175536 Msa0275160:CDS
AGATATTTGGTGCGTAAGTG+TGG 0.576360 2_3:+7176168 Msa0275160:CDS
AATCTGAAGAATCTTTCACT+TGG 0.577117 2_3:+7175500 Msa0275160:CDS
ACATGGGTAAGAGCAATGTC+AGG 0.578816 2_3:+7175532 Msa0275160:CDS
GAATCAACCATCAGGAAAGT+GGG 0.580534 2_3:+7175024 Msa0275160:CDS
AGAGCACATCCAAGAAGCAC+AGG 0.580657 2_3:-7175466 None:intergenic
TCGATGAATTTGACGCCTCG+TGG 0.582578 2_3:+7175743 Msa0275160:CDS
AAGAACTTGAAGTACAGGCC+AGG 0.583073 2_3:+7174789 Msa0275160:CDS
TGTCAGATGTTTGAATATGA+AGG 0.583906 2_3:+7176255 Msa0275160:CDS
CCTTACAGCCAACTCTTGAA+GGG 0.585947 2_3:-7174985 None:intergenic
GCTTTGTGTGCTCAAAAGAA+GGG 0.587200 2_3:+7174954 Msa0275160:CDS
CTCGCTACATCTTACACCGA+TGG 0.590796 2_3:+7176337 Msa0275160:CDS
CAAGAAGCACAGGTTGCTTG+TGG 0.592747 2_3:-7175456 None:intergenic
ATTGTAAAGGAGCATCCTGT+TGG 0.597584 2_3:+7174284 Msa0275160:CDS
AGGGCGGGAGAAAACTGTGT+TGG 0.601217 2_3:+7176526 Msa0275160:CDS
GCCAGGATCGAACCATATGT+TGG 0.601674 2_3:+7174806 Msa0275160:CDS
AATGTGCCCTTTAAATAGAA+CGG 0.602152 2_3:-7175844 None:intergenic
CTTTAAATAGAACGGAACCC+AGG 0.602743 2_3:-7175836 None:intergenic
CTGAAGTCACTCGCAAGCCA+AGG 0.602865 2_3:+7174690 Msa0275160:CDS
GGTAATGAGTAATGCAATTG+GGG 0.604332 2_3:+7174316 Msa0275160:CDS
ATGAGCATGGTAAAATTGGT+AGG 0.604922 2_3:-7174855 None:intergenic
AGCATGGAATCATTCTTTGG+TGG 0.604989 2_3:+7175892 Msa0275160:CDS
GCAAAGGAACAAGAGCTCGC+CGG 0.611525 2_3:+7175661 Msa0275160:CDS
AAAATGCTTGAAGTAGGGAA+TGG 0.612218 2_3:+7174716 Msa0275160:CDS
CTTGAAATTAATAACACCAA+AGG 0.620334 2_3:-7174753 None:intergenic
TACGCACCAAATATCTGCTG+AGG 0.623181 2_3:-7176161 None:intergenic
CTATTACTGACAAAGGCTGC+CGG 0.623252 2_3:-7175555 None:intergenic
CGCGGAATGAACTCTGTGAG+AGG 0.627384 2_3:-7175934 None:intergenic
TGATCAGCTATTACTGACAA+AGG 0.628429 2_3:-7175562 None:intergenic
GAACCCATTACCCATCAGAC+CGG 0.633308 2_3:-7175680 None:intergenic
CGGTGTAAGATGTAGCGAGA+AGG 0.633470 2_3:-7176333 None:intergenic
ACGCACCAAATATCTGCTGA+GGG 0.642827 2_3:-7176160 None:intergenic
TCAAGATGTTTCAATCCAGA+GGG 0.646236 2_3:+7175582 Msa0275160:CDS
AATAGGAGAGGTGTAAAGCA+CGG 0.650425 2_3:-7173849 None:intergenic
AATGAGTAATGCAATTGGGG+AGG 0.656176 2_3:+7174319 Msa0275160:CDS
TGGACAAGAAATGCTGAGGA+TGG 0.668666 2_3:+7176357 Msa0275160:CDS
CCGATGGACAAGAAATGCTG+AGG 0.681471 2_3:+7176353 Msa0275160:CDS
GAATTGGGGACAAATAGGAG+AGG 0.707152 2_3:-7173861 None:intergenic
TCGAGACCTCTTTCATAACG+CGG 0.715495 2_3:-7175952 None:intergenic
GACGAGTACAGCACTCCACG+AGG 0.756116 2_3:-7175758 None:intergenic
AGGAGAGGTGTAAAGCACGG+AGG 0.776774 2_3:-7173846 None:intergenic
TATATGATGTATCTACAACG+AGG 0.828520 2_3:-7175384 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAAGTTTTATATATCTTA+TGG + chr2_3:7174404-7174423 Msa0275160:CDS 15.0%
!! TAAGAAATGAAAAATTTACC+TGG - chr2_3:7173938-7173957 None:intergenic 20.0%
!! ACTAAGAAATCGAAATAATT+GGG - chr2_3:7174013-7174032 None:intergenic 20.0%
!! AACTAAGAAATCGAAATAAT+TGG - chr2_3:7174014-7174033 None:intergenic 20.0%
!! ATAAAATTATCATCATCTGA+AGG - chr2_3:7174095-7174114 None:intergenic 20.0%
!! TTGAAATTAATAACACCAAA+GGG - chr2_3:7174755-7174774 None:intergenic 20.0%
!!! ATATAGAAAGAGTGTTTATA+TGG + chr2_3:7175402-7175421 Msa0275160:CDS 20.0%
!! TTGCAAAAAAGTTTGAAAAT+TGG - chr2_3:7176019-7176038 None:intergenic 20.0%
!!! GATTTAAAATCTATGAAGAA+GGG + chr2_3:7176136-7176155 Msa0275160:CDS 20.0%
! ATTGATGAATTGGATTGAAA+TGG - chr2_3:7173906-7173925 None:intergenic 25.0%
! AGGAGGTAAATTAATTACTA+CGG - chr2_3:7174075-7174094 None:intergenic 25.0%
!! ATTTGGGATAATGATTGTAA+AGG + chr2_3:7174271-7174290 Msa0275160:CDS 25.0%
! TATATCTTATGGTAATCGAA+TGG + chr2_3:7174415-7174434 Msa0275160:CDS 25.0%
! ATATCTTATGGTAATCGAAT+GGG + chr2_3:7174416-7174435 Msa0275160:CDS 25.0%
! CTTGAAATTAATAACACCAA+AGG - chr2_3:7174756-7174775 None:intergenic 25.0%
!!! TTGTTTCGTTCTAAAAATGA+CGG + chr2_3:7174914-7174933 Msa0275160:CDS 25.0%
!!! GATTATGATCTTTTTCAAGA+CGG - chr2_3:7175057-7175076 None:intergenic 25.0%
! AAAAGATCATAATCATGATC+TGG + chr2_3:7175063-7175082 Msa0275160:CDS 25.0%
! AAAGATCATAATCATGATCT+GGG + chr2_3:7175064-7175083 Msa0275160:CDS 25.0%
! AAAATCACATTAGAAGTGAT+TGG + chr2_3:7175215-7175234 Msa0275160:CDS 25.0%
!!! TTTTAGAGTATTTTCAGTCA+AGG + chr2_3:7175248-7175267 Msa0275160:CDS 25.0%
!! TAATTGCATGAGCATATTTT+GGG + chr2_3:7175318-7175337 Msa0275160:CDS 25.0%
!! GGATTTAAAATCTATGAAGA+AGG + chr2_3:7176135-7176154 Msa0275160:CDS 25.0%
! AGTTAAAAAGTTTGATGCTA+TGG + chr2_3:7176418-7176437 Msa0275160:CDS 25.0%
!! GAATTGAAGCATTGATGAAT+TGG - chr2_3:7173916-7173935 None:intergenic 30.0%
GGAATGGATCGAAATAATTA+GGG - chr2_3:7173963-7173982 None:intergenic 30.0%
AAATTATCATCATCTGAAGG+AGG - chr2_3:7174092-7174111 None:intergenic 30.0%
!!! GCTTTTGTTTGCTTTGAAAA+AGG + chr2_3:7174237-7174256 Msa0275160:intron 30.0%
!! TTGTTTGCTTTGAAAAAGGA+AGG + chr2_3:7174241-7174260 Msa0275160:intron 30.0%
! TGGTAATGAGTAATGCAATT+GGG + chr2_3:7174315-7174334 Msa0275160:CDS 30.0%
! TTTTCTTGTGATCCATACAT+AGG + chr2_3:7174353-7174372 Msa0275160:CDS 30.0%
TTTCTTGTGATCCATACATA+GGG + chr2_3:7174354-7174373 Msa0275160:CDS 30.0%
AAAAACTCTAACCCTATGTA+TGG - chr2_3:7174368-7174387 None:intergenic 30.0%
!!! AGGGTTAGAGTTTTTTAATG+CGG + chr2_3:7174373-7174392 Msa0275160:CDS 30.0%
! ATCGAATGGGATTTAAAGTT+CGG + chr2_3:7174429-7174448 Msa0275160:CDS 30.0%
TTTATCGATCGAGAACTAAT+GGG + chr2_3:7174462-7174481 Msa0275160:CDS 30.0%
! AGTTAAATGATTCTGGAAAG+TGG + chr2_3:7174570-7174589 Msa0275160:CDS 30.0%
! GTTAAATGATTCTGGAAAGT+GGG + chr2_3:7174571-7174590 Msa0275160:CDS 30.0%
! GGTTGTTGATCATTTTCATA+AGG + chr2_3:7174592-7174611 Msa0275160:CDS 30.0%
AAAAGAAGAACTTGAAGTAC+AGG + chr2_3:7174784-7174803 Msa0275160:CDS 30.0%
TAAAATTGGTAGGCTTCATT+AGG - chr2_3:7174848-7174867 None:intergenic 30.0%
ATTACCATTATCAACTTCCA+TGG - chr2_3:7175302-7175321 None:intergenic 30.0%
! GTAATTGCATGAGCATATTT+TGG + chr2_3:7175317-7175336 Msa0275160:CDS 30.0%
TATATGATGTATCTACAACG+AGG - chr2_3:7175387-7175406 None:intergenic 30.0%
ATTCCAACAAAAGTAGCAAA+TGG - chr2_3:7175430-7175449 None:intergenic 30.0%
AATCTGAAGAATCTTTCACT+TGG + chr2_3:7175500-7175519 Msa0275160:CDS 30.0%
AATGTGCCCTTTAAATAGAA+CGG - chr2_3:7175847-7175866 None:intergenic 30.0%
AATTCCTATGAAAGAAAGCA+TGG + chr2_3:7175876-7175895 Msa0275160:CDS 30.0%
TTCTTTGGTGGAAGTTTAAA+TGG + chr2_3:7175904-7175923 Msa0275160:CDS 30.0%
TAAGTGTGGAAATGATGATA+TGG + chr2_3:7176182-7176201 Msa0275160:CDS 30.0%
TGTCAGATGTTTGAATATGA+AGG + chr2_3:7176255-7176274 Msa0275160:CDS 30.0%
!! GTTGAGGGTTTTTCAAATAT+TGG + chr2_3:7176296-7176315 Msa0275160:CDS 30.0%
! AGAGAGAAATAGTGGAATTG+GGG - chr2_3:7173878-7173897 None:intergenic 35.0%
! GAGAGAGAAATAGTGGAATT+GGG - chr2_3:7173879-7173898 None:intergenic 35.0%
! TGAGAGAGAAATAGTGGAAT+TGG - chr2_3:7173880-7173899 None:intergenic 35.0%
TGGAATTGAGAGAGAAATAG+TGG - chr2_3:7173886-7173905 None:intergenic 35.0%
TTCATCAATGCTTCAATTCC+AGG + chr2_3:7173917-7173936 Msa0275160:exon 35.0%
GGGAATGGATCGAAATAATT+AGG - chr2_3:7173964-7173983 None:intergenic 35.0%
CAATAAAAAGTCAAAGCAGC+GGG - chr2_3:7173984-7174003 None:intergenic 35.0%
GCAATAAAAAGTCAAAGCAG+CGG - chr2_3:7173985-7174004 None:intergenic 35.0%
! AGTGCTTTTCTCTTAATGTG+TGG + chr2_3:7174209-7174228 Msa0275160:intron 35.0%
! CTTTGAAAAAGGAAGGTAGT+AGG + chr2_3:7174248-7174267 Msa0275160:intron 35.0%
AAAAGGAAGGTAGTAGGATT+TGG + chr2_3:7174254-7174273 Msa0275160:intron 35.0%
AAAGGAAGGTAGTAGGATTT+GGG + chr2_3:7174255-7174274 Msa0275160:intron 35.0%
! CTGGTAATGAGTAATGCAAT+TGG + chr2_3:7174314-7174333 Msa0275160:CDS 35.0%
GGTAATGAGTAATGCAATTG+GGG + chr2_3:7174316-7174335 Msa0275160:CDS 35.0%
! ATGGGATTTAAAGTTCGGAT+TGG + chr2_3:7174434-7174453 Msa0275160:CDS 35.0%
CTTTATCGATCGAGAACTAA+TGG + chr2_3:7174461-7174480 Msa0275160:CDS 35.0%
TAGAAGATTTGTGTGTTCGA+AGG + chr2_3:7174496-7174515 Msa0275160:CDS 35.0%
AGGGTTCAGTTAAATGATTC+TGG + chr2_3:7174563-7174582 Msa0275160:CDS 35.0%
!! CACTTTCATTTTCAAGAGTG+TGG - chr2_3:7174625-7174644 None:intergenic 35.0%
! ACTTCAAGCATTTTCTTCCT+TGG - chr2_3:7174710-7174729 None:intergenic 35.0%
AGGAAGAAAATGCTTGAAGT+AGG + chr2_3:7174710-7174729 Msa0275160:CDS 35.0%
GGAAGAAAATGCTTGAAGTA+GGG + chr2_3:7174711-7174730 Msa0275160:CDS 35.0%
AAAATGCTTGAAGTAGGGAA+TGG + chr2_3:7174716-7174735 Msa0275160:CDS 35.0%
ATAACACCAAAGGGAGAAAT+AGG - chr2_3:7174746-7174765 None:intergenic 35.0%
ATGAGCATGGTAAAATTGGT+AGG - chr2_3:7174858-7174877 None:intergenic 35.0%
AGGATTAAGAATCAACCATC+AGG + chr2_3:7175016-7175035 Msa0275160:CDS 35.0%
GTAAACACTGAATTGGTGAA+TGG + chr2_3:7175145-7175164 Msa0275160:CDS 35.0%
! TACAGGATTCTTTTATGCCA+TGG + chr2_3:7175282-7175301 Msa0275160:CDS 35.0%
!! TATGCCATGGAAGTTGATAA+TGG + chr2_3:7175295-7175314 Msa0275160:CDS 35.0%
AGATACTCATGTAGTCAGTT+TGG + chr2_3:7175355-7175374 Msa0275160:CDS 35.0%
!!! GTACCATTTGCTACTTTTGT+TGG + chr2_3:7175424-7175443 Msa0275160:CDS 35.0%
TGATCAGCTATTACTGACAA+AGG - chr2_3:7175565-7175584 None:intergenic 35.0%
ATCAAGATGTTTCAATCCAG+AGG + chr2_3:7175581-7175600 Msa0275160:CDS 35.0%
TCAAGATGTTTCAATCCAGA+GGG + chr2_3:7175582-7175601 Msa0275160:CDS 35.0%
GTTGTGGCAAATTAATGCAA+AGG + chr2_3:7175645-7175664 Msa0275160:CDS 35.0%
! ACTCGTCAAATATGGATTGA+AGG + chr2_3:7175774-7175793 Msa0275160:CDS 35.0%
TGGGTTCCGTTCTATTTAAA+GGG + chr2_3:7175838-7175857 Msa0275160:CDS 35.0%
GATTCCATGCTTTCTTTCAT+AGG - chr2_3:7175883-7175902 None:intergenic 35.0%
! GAAAGCATGGAATCATTCTT+TGG + chr2_3:7175889-7175908 Msa0275160:CDS 35.0%
TCGTGAAGAAGAAAGAAAAG+AGG + chr2_3:7175981-7176000 Msa0275160:CDS 35.0%
TTGCAGTGCTTTAGTTATCT+TGG + chr2_3:7176114-7176133 Msa0275160:CDS 35.0%
GCTACAACTAATGTCAAGAT+TGG - chr2_3:7176235-7176254 None:intergenic 35.0%
! TTTTTCCTGACATAGGATCA+TGG + chr2_3:7176382-7176401 Msa0275160:CDS 35.0%
GCATCTAAATACATAGATGC+TGG + chr2_3:7176456-7176475 Msa0275160:CDS 35.0%
! AATAGGAGAGGTGTAAAGCA+CGG - chr2_3:7173852-7173871 None:intergenic 40.0%
TAGTGGAATTGGGGACAAAT+AGG - chr2_3:7173869-7173888 None:intergenic 40.0%
TTCCTCATAACTTTCCATGC+AGG + chr2_3:7174182-7174201 Msa0275160:intron 40.0%
TTCCTGCATGGAAAGTTATG+AGG - chr2_3:7174187-7174206 None:intergenic 40.0%
!! GAAAAGCACTTATTCCTGCA+TGG - chr2_3:7174199-7174218 None:intergenic 40.0%
!! ATTGTAAAGGAGCATCCTGT+TGG + chr2_3:7174284-7174303 Msa0275160:CDS 40.0%
ATTACCAGTTCAGTACCAAC+AGG - chr2_3:7174302-7174321 None:intergenic 40.0%
AATGAGTAATGCAATTGGGG+AGG + chr2_3:7174319-7174338 Msa0275160:CDS 40.0%
AAGATTTGTGTGTTCGAAGG+AGG + chr2_3:7174499-7174518 Msa0275160:CDS 40.0%
AGATTTGTGTGTTCGAAGGA+GGG + chr2_3:7174500-7174519 Msa0275160:CDS 40.0%
TGGTTGTCCAGCATTCATAA+GGG + chr2_3:7174544-7174563 Msa0275160:CDS 40.0%
AACTGAACCCTTATGAATGC+TGG - chr2_3:7174554-7174573 None:intergenic 40.0%
!! ATAGCTTTTGGCTGCAATGT+TGG - chr2_3:7174659-7174678 None:intergenic 40.0%
! GTAGAAGACTCGATAGCTTT+TGG - chr2_3:7174671-7174690 None:intergenic 40.0%
CTGAACTCTTGACCAACATA+TGG - chr2_3:7174821-7174840 None:intergenic 40.0%
CTGCATGAGCATGGTAAAAT+TGG - chr2_3:7174862-7174881 None:intergenic 40.0%
!!! TTGGGTTTTGGAATTCGAGT+CGG + chr2_3:7174887-7174906 Msa0275160:CDS 40.0%
GCTTTGTGTGCTCAAAAGAA+GGG + chr2_3:7174954-7174973 Msa0275160:CDS 40.0%
TTGGCTGTAAGGCTTATTTG+AGG + chr2_3:7174996-7175015 Msa0275160:CDS 40.0%
AGAATCAACCATCAGGAAAG+TGG + chr2_3:7175023-7175042 Msa0275160:CDS 40.0%
GAATCAACCATCAGGAAAGT+GGG + chr2_3:7175024-7175043 Msa0275160:CDS 40.0%
CAATTCAGTGTTTACCTCCT+CGG - chr2_3:7175140-7175159 None:intergenic 40.0%
TGGTGAATGGCGACATATTT+AGG + chr2_3:7175158-7175177 Msa0275160:CDS 40.0%
!! GATTTTGTCTAGCTCCTCTT+AGG - chr2_3:7175201-7175220 None:intergenic 40.0%
!! ATGAGCATATTTTGGGCTGA+CGG + chr2_3:7175325-7175344 Msa0275160:CDS 40.0%
! TCACTTGGTTGTTTCAGACA+TGG + chr2_3:7175515-7175534 Msa0275160:CDS 40.0%
! CACTTGGTTGTTTCAGACAT+GGG + chr2_3:7175516-7175535 Msa0275160:CDS 40.0%
GGCAATAGCAAAAGTCTTTC+CGG + chr2_3:7175603-7175622 Msa0275160:CDS 40.0%
! GAAAAGCGATGATTGGTTAC+CGG - chr2_3:7175625-7175644 None:intergenic 40.0%
AGTGCTGTACTCGTCAAATA+TGG + chr2_3:7175766-7175785 Msa0275160:CDS 40.0%
! ATGGATTGAAGGACAATGCT+TGG + chr2_3:7175785-7175804 Msa0275160:CDS 40.0%
CTTTAAATAGAACGGAACCC+AGG - chr2_3:7175839-7175858 None:intergenic 40.0%
CTGGGTTCCGTTCTATTTAA+AGG + chr2_3:7175837-7175856 Msa0275160:CDS 40.0%
!! TTAAAGGGCACATTTTCTGC+TGG + chr2_3:7175853-7175872 Msa0275160:CDS 40.0%
AGCATGGAATCATTCTTTGG+TGG + chr2_3:7175892-7175911 Msa0275160:CDS 40.0%
TTCATTCCGCGTTATGAAAG+AGG + chr2_3:7175946-7175965 Msa0275160:CDS 40.0%
!! AGATATTTGGTGCGTAAGTG+TGG + chr2_3:7176168-7176187 Msa0275160:CDS 40.0%
TTCTTTGTAGACACGTGTTG+AGG + chr2_3:7176280-7176299 Msa0275160:CDS 40.0%
TCTTTGTAGACACGTGTTGA+GGG + chr2_3:7176281-7176300 Msa0275160:CDS 40.0%
! GATGGTGTTTTTCCTGACAT+AGG + chr2_3:7176375-7176394 Msa0275160:CDS 40.0%
GAATTGGGGACAAATAGGAG+AGG - chr2_3:7173864-7173883 None:intergenic 45.0%
AAAAGTCAAAGCAGCGGGAA+TGG - chr2_3:7173979-7173998 None:intergenic 45.0%
CATCAGCTCAGTTCAAGAAC+TGG + chr2_3:7174524-7174543 Msa0275160:CDS 45.0%
CTGGTTGTCCAGCATTCATA+AGG + chr2_3:7174543-7174562 Msa0275160:CDS 45.0%
! GGTGAACCTATTTCTCCCTT+TGG + chr2_3:7174737-7174756 Msa0275160:CDS 45.0%
AAGAACTTGAAGTACAGGCC+AGG + chr2_3:7174789-7174808 Msa0275160:CDS 45.0%
ACCAACATATGGTTCGATCC+TGG - chr2_3:7174810-7174829 None:intergenic 45.0%
CATGCTCATGCAGCATACTT+GGG + chr2_3:7174869-7174888 Msa0275160:CDS 45.0%
! CATGCAGCATACTTGGGTTT+TGG + chr2_3:7174875-7174894 Msa0275160:CDS 45.0%
CGCTTTGTGTGCTCAAAAGA+AGG + chr2_3:7174953-7174972 Msa0275160:CDS 45.0%
CCTTACAGCCAACTCTTGAA+GGG - chr2_3:7174988-7175007 None:intergenic 45.0%
CATAATCATGATCTGGGCCT+TGG + chr2_3:7175070-7175089 Msa0275160:CDS 45.0%
TTGTCTTACGTTCCGTTCCA+AGG - chr2_3:7175090-7175109 None:intergenic 45.0%
TCGGTCAAAATGTTGGAAGC+AGG - chr2_3:7175121-7175140 None:intergenic 45.0%
!! TGCTTCCAACATTTTGACCG+AGG + chr2_3:7175120-7175139 Msa0275160:CDS 45.0%
!! TTCCAACATTTTGACCGAGG+AGG + chr2_3:7175123-7175142 Msa0275160:CDS 45.0%
TACCTCCTCGGTCAAAATGT+TGG - chr2_3:7175128-7175147 None:intergenic 45.0%
CGAGGAGGTAAACACTGAAT+TGG + chr2_3:7175138-7175157 Msa0275160:CDS 45.0%
GATAACTACCCTGTCCTAAG+AGG + chr2_3:7175184-7175203 Msa0275160:CDS 45.0%
TCAAGGCAAGCAGAAGATAC+AGG + chr2_3:7175265-7175284 Msa0275160:CDS 45.0%
ACATGGGTAAGAGCAATGTC+AGG + chr2_3:7175532-7175551 Msa0275160:CDS 45.0%
CTATTACTGACAAAGGCTGC+CGG - chr2_3:7175558-7175577 None:intergenic 45.0%
!!! AGACTTTTGCTATTGCCCTC+TGG - chr2_3:7175600-7175619 None:intergenic 45.0%
CCACAACGAAAAGCGATGAT+TGG - chr2_3:7175632-7175651 None:intergenic 45.0%
!! CCAATCATCGCTTTTCGTTG+TGG + chr2_3:7175629-7175648 Msa0275160:CDS 45.0%
! CGTCAAATTCATCGACTGTC+TGG - chr2_3:7175738-7175757 None:intergenic 45.0%
!! TGAACTCTGTGAGAGGTGTT+TGG - chr2_3:7175930-7175949 None:intergenic 45.0%
TCGAGACCTCTTTCATAACG+CGG - chr2_3:7175955-7175974 None:intergenic 45.0%
CTTCTGCACTGTTCTTCTAC+TGG - chr2_3:7176051-7176070 None:intergenic 45.0%
ACGCACCAAATATCTGCTGA+GGG - chr2_3:7176163-7176182 None:intergenic 45.0%
TACGCACCAAATATCTGCTG+AGG - chr2_3:7176164-7176183 None:intergenic 45.0%
CCTCAGCATTTCTTGTCCAT+CGG - chr2_3:7176356-7176375 None:intergenic 45.0%
TGGACAAGAAATGCTGAGGA+TGG + chr2_3:7176357-7176376 Msa0275160:CDS 45.0%
CTACTCCATGATCCTATGTC+AGG - chr2_3:7176390-7176409 None:intergenic 45.0%
! TGCCTATGAGATTTTGCGAG+AGG + chr2_3:7176506-7176525 Msa0275160:CDS 45.0%
! GCCTATGAGATTTTGCGAGA+GGG + chr2_3:7176507-7176526 Msa0275160:CDS 45.0%
! TATGAGATTTTGCGAGAGGG+CGG + chr2_3:7176510-7176529 Msa0275160:CDS 45.0%
! GCATCCTGTTGGTACTGAAC+TGG + chr2_3:7174295-7174314 Msa0275160:CDS 50.0%
GAGTAATGCAATTGGGGAGG+AGG + chr2_3:7174322-7174341 Msa0275160:CDS 50.0%
GCCAGGATCGAACCATATGT+TGG + chr2_3:7174806-7174825 Msa0275160:CDS 50.0%
CCAAGTATGCTGCATGAGCA+TGG - chr2_3:7174871-7174890 None:intergenic 50.0%
CCATGCTCATGCAGCATACT+TGG + chr2_3:7174868-7174887 Msa0275160:CDS 50.0%
TTCCAGCACCCTTCAAGAGT+TGG + chr2_3:7174977-7174996 Msa0275160:CDS 50.0%
CCCTTCAAGAGTTGGCTGTA+AGG + chr2_3:7174985-7175004 Msa0275160:CDS 50.0%
GCCTTACAGCCAACTCTTGA+AGG - chr2_3:7174989-7175008 None:intergenic 50.0%
TCGACTACCCACTTTCCTGA+TGG - chr2_3:7175034-7175053 None:intergenic 50.0%
TCATGATCTGGGCCTTGGAA+CGG + chr2_3:7175075-7175094 Msa0275160:CDS 50.0%
! GTCTAGCTCCTCTTAGGACA+GGG - chr2_3:7175195-7175214 None:intergenic 50.0%
! TGTCTAGCTCCTCTTAGGAC+AGG - chr2_3:7175196-7175215 None:intergenic 50.0%
! CAAGAAGCACAGGTTGCTTG+TGG - chr2_3:7175459-7175478 None:intergenic 50.0%
CACAAGCAACCTGTGCTTCT+TGG + chr2_3:7175457-7175476 Msa0275160:CDS 50.0%
! AGAGCACATCCAAGAAGCAC+AGG - chr2_3:7175469-7175488 None:intergenic 50.0%
GAACCCATTACCCATCAGAC+CGG - chr2_3:7175683-7175702 None:intergenic 50.0%
! ATTCATCGACTGTCTGGCTC+TGG - chr2_3:7175732-7175751 None:intergenic 50.0%
TCGATGAATTTGACGCCTCG+TGG + chr2_3:7175743-7175762 Msa0275160:CDS 50.0%
! TGTATGAGAAGCGTGCATCC+TGG + chr2_3:7175818-7175837 Msa0275160:CDS 50.0%
! GTATGAGAAGCGTGCATCCT+GGG + chr2_3:7175819-7175838 Msa0275160:CDS 50.0%
AGGGTCCCTCAGCAGATATT+TGG + chr2_3:7176155-7176174 Msa0275160:CDS 50.0%
CGGTGTAAGATGTAGCGAGA+AGG - chr2_3:7176336-7176355 None:intergenic 50.0%
CTCGCTACATCTTACACCGA+TGG + chr2_3:7176337-7176356 Msa0275160:CDS 50.0%
CCGATGGACAAGAAATGCTG+AGG + chr2_3:7176353-7176372 Msa0275160:CDS 50.0%
AGGATCATGGAGTAGCTCTC+AGG + chr2_3:7176395-7176414 Msa0275160:CDS 50.0%
GCCCTCTCGCAAAATCTCAT+AGG - chr2_3:7176511-7176530 None:intergenic 50.0%
! ATGAGATTTTGCGAGAGGGC+GGG + chr2_3:7176511-7176530 Msa0275160:CDS 50.0%
! GGAGAAAACTGTGTTGGCAC+AGG + chr2_3:7176532-7176551 Msa0275160:CDS 50.0%
CTGAAGTCACTCGCAAGCCA+AGG + chr2_3:7174690-7174709 Msa0275160:CDS 55.0%
! AGCCAACTCTTGAAGGGTGC+TGG - chr2_3:7174982-7175001 None:intergenic 55.0%
GAAGCACAGGTTGCTTGTGG+TGG - chr2_3:7175456-7175475 None:intergenic 55.0%
GGGTAAGAGCAATGTCAGGC+CGG + chr2_3:7175536-7175555 Msa0275160:CDS 55.0%
GCAAAGGAACAAGAGCTCGC+CGG + chr2_3:7175661-7175680 Msa0275160:CDS 55.0%
! TCGCCGGTCTGATGGGTAAT+GGG + chr2_3:7175677-7175696 Msa0275160:CDS 55.0%
CGCGGAATGAACTCTGTGAG+AGG - chr2_3:7175937-7175956 None:intergenic 55.0%
AGGGCGGGAGAAAACTGTGT+TGG + chr2_3:7176526-7176545 Msa0275160:CDS 55.0%
ACAAGAGCTCGCCGGTCTGA+TGG + chr2_3:7175669-7175688 Msa0275160:CDS 60.0%
CAAGAGCTCGCCGGTCTGAT+GGG + chr2_3:7175670-7175689 Msa0275160:CDS 60.0%
! CTCGCCGGTCTGATGGGTAA+TGG + chr2_3:7175676-7175695 Msa0275160:CDS 60.0%
GACGAGTACAGCACTCCACG+AGG - chr2_3:7175761-7175780 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 7173849 7176557 7173849 ID=Msa0275160;Name=Msa0275160
chr2_3 mRNA 7173849 7176557 7173849 ID=Msa0275160-mRNA-1;Parent=Msa0275160;Name=Msa0275160-mRNA-1;_AED=0.08;_eAED=0.90;_QI=75|0|0.5|1|0|0|2|0|769
chr2_3 exon 7173849 7173938 7173849 ID=Msa0275160-mRNA-1:exon:3327;Parent=Msa0275160-mRNA-1
chr2_3 exon 7174263 7176557 7174263 ID=Msa0275160-mRNA-1:exon:3328;Parent=Msa0275160-mRNA-1
chr2_3 five_prime_UTR 7173849 7173923 7173849 ID=Msa0275160-mRNA-1:five_prime_utr;Parent=Msa0275160-mRNA-1
chr2_3 CDS 7173924 7173938 7173924 ID=Msa0275160-mRNA-1:cds;Parent=Msa0275160-mRNA-1
chr2_3 CDS 7174263 7176557 7174263 ID=Msa0275160-mRNA-1:cds;Parent=Msa0275160-mRNA-1
Gene Sequence

>Msa0275160

ATGCTTCAATTCCAGGTAGTAGGATTTGGGATAATGATTGTAAAGGAGCATCCTGTTGGTACTGAACTGGTAATGAGTAATGCAATTGGGGAGGAGGAAATTGATTTTTCTTGTGATCCATACATAGGGTTAGAGTTTTTTAATGCGGATGACGCGCTTAAGTTTTATATATCTTATGGTAATCGAATGGGATTTAAAGTTCGGATTGGTCAACTTTATCGATCGAGAACTAATGGGTCTGTTTCTTCTAGAAGATTTGTGTGTTCGAAGGAGGGACATCAGCTCAGTTCAAGAACTGGTTGTCCAGCATTCATAAGGGTTCAGTTAAATGATTCTGGAAAGTGGGTTGTTGATCATTTTCATAAGGATCATAACCACACTCTTGAAAATGAAAGTGAAAGTTTCGCTCCAACATTGCAGCCAAAAGCTATCGAGTCTTCTACTGAAGTCACTCGCAAGCCAAGGAAGAAAATGCTTGAAGTAGGGAATGGTGAACCTATTTCTCCCTTTGGTGTTATTAATTTCAAGCGTATGAGAAAAGAAGAACTTGAAGTACAGGCCAGGATCGAACCATATGTTGGTCAAGAGTTCAGTACTCCTAATGAAGCCTACCAATTTTACCATGCTCATGCAGCATACTTGGGTTTTGGAATTCGAGTCGGTCAATTGTTTCGTTCTAAAAATGACGGATCAATTACATCTCGACGCTTTGTGTGCTCAAAAGAAGGGTTCCAGCACCCTTCAAGAGTTGGCTGTAAGGCTTATTTGAGGATTAAGAATCAACCATCAGGAAAGTGGGTAGTCGACCGTCTTGAAAAAGATCATAATCATGATCTGGGCCTTGGAACGGAACGTAAGACAAAAAGTCTTCCTGCTTCCAACATTTTGACCGAGGAGGTAAACACTGAATTGGTGAATGGCGACATATTTAGGATAGATAACTACCCTGTCCTAAGAGGAGCTAGACAAAATCACATTAGAAGTGATTGGTACAACATGCTTTTAGAGTATTTTCAGTCAAGGCAAGCAGAAGATACAGGATTCTTTTATGCCATGGAAGTTGATAATGGTAATTGCATGAGCATATTTTGGGCTGACGGAAGATCTAGATACTCATGTAGTCAGTTTGGCGATGTCCTCGTTGTAGATACATCATATAGAAAGAGTGTTTATATGGTACCATTTGCTACTTTTGTTGGAATTAACCACCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGGTAAGAGCAATGTCAGGCCGGCAGCCTTTGTCAGTAATAGCTGATCAAGATGTTTCAATCCAGAGGGCAATAGCAAAAGTCTTTCCGGTAACCAATCATCGCTTTTCGTTGTGGCAAATTAATGCAAAGGAACAAGAGCTCGCCGGTCTGATGGGTAATGGGTTCACTAAAGATTATGAAAAGTGTGTTTACCAGAGCCAGACAGTCGATGAATTTGACGCCTCGTGGAGTGCTGTACTCGTCAAATATGGATTGAAGGACAATGCTTGGCTAAAAGAAATGTATGAGAAGCGTGCATCCTGGGTTCCGTTCTATTTAAAGGGCACATTTTCTGCTGGAATTCCTATGAAAGAAAGCATGGAATCATTCTTTGGTGGAAGTTTAAATGGCCAAACACCTCTCACAGAGTTCATTCCGCGTTATGAAAGAGGTCTCGAGCGACGTCGTGAAGAAGAAAGAAAAGAGGATTTTAATACTTCCAATTTTCAAACTTTTTTGCAAACAAAAGAGCCAGTAGAAGAACAGTGCAGAAGACTTTACACTCTTGCAGTATTCAAAGTATTTCAGAAAGAGCTTTTGCAGTGCTTTAGTTATCTTGGATTTAAAATCTATGAAGAAGGGTCCCTCAGCAGATATTTGGTGCGTAAGTGTGGAAATGATGATATGGTGAAGCATGTAGTTACATTCAATGCATCCAATCTTGACATTAGTTGTAGCTGTCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTTCAAATATTGGAAGTAAGAGAAGTTCCTTCTCGCTACATCTTACACCGATGGACAAGAAATGCTGAGGATGGTGTTTTTCCTGACATAGGATCATGGAGTAGCTCTCAGGAGTTAAAAAGTTTGATGCTATGGAGTCTAAGAGAAACAGCATCTAAATACATAGATGCTGGTGCATCATCAATTGAAAAGTATAAACTTGCCTATGAGATTTTGCGAGAGGGCGGGAGAAAACTGTGTTGGCACAGGTGA
Protein sequence

>Msa0275160

MLQFQVVGFGIMIVKEHPVGTELVMSNAIGEEEIDFSCDPYIGLEFFNADDALKFYISYGNRMGFKVRIGQLYRSRTNGSVSSRRFVCSKEGHQLSSRTGCPAFIRVQLNDSGKWVVDHFHKDHNHTLENESESFAPTLQPKAIESSTEVTRKPRKKMLEVGNGEPISPFGVINFKRMRKEELEVQARIEPYVGQEFSTPNEAYQFYHAHAAYLGFGIRVGQLFRSKNDGSITSRRFVCSKEGFQHPSRVGCKAYLRIKNQPSGKWVVDRLEKDHNHDLGLGTERKTKSLPASNILTEEVNTELVNGDIFRIDNYPVLRGARQNHIRSDWYNMLLEYFQSRQAEDTGFFYAMEVDNGNCMSIFWADGRSRYSCSQFGDVLVVDTSYRKSVYMVPFATFVGINHHKQPVLLGCALIADESEESFTWLFQTWVRAMSGRQPLSVIADQDVSIQRAIAKVFPVTNHRFSLWQINAKEQELAGLMGNGFTKDYEKCVYQSQTVDEFDASWSAVLVKYGLKDNAWLKEMYEKRASWVPFYLKGTFSAGIPMKESMESFFGGSLNGQTPLTEFIPRYERGLERRREEERKEDFNTSNFQTFLQTKEPVEEQCRRLYTLAVFKVFQKELLQCFSYLGFKIYEEGSLSRYLVRKCGNDDMVKHVVTFNASNLDISCSCQMFEYEGVLCRHVLRVFQILEVREVPSRYILHRWTRNAEDGVFPDIGSWSSSQELKSLMLWSLRETASKYIDAGASSIEKYKLAYEILREGGRKLCWHR*