AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127100 MtrunA17_Chr1g0185561 91.579 95 8 0 12 106 1 95 2.09e-55 179
Msa0127100 MtrunA17_Chr1g0205881 58.947 95 36 1 7 101 2 93 3.76e-31 114
Msa0127100 MtrunA17_Chr3g0134391 42.667 75 40 2 28 101 36 108 8.27e-15 66.2
Msa0127100 MtrunA17_Chr1g0152901 31.765 85 56 1 17 101 17 99 8.25e-12 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127100 AT3G63130.1 68.889 90 28 0 12 101 1 90 2.84e-41 142
Msa0127100 AT3G63130.2 68.889 90 28 0 12 101 1 90 2.84e-41 142
Msa0127100 AT5G19320.1 60.256 78 31 0 24 101 12 89 2.52e-27 104
Msa0127100 AT5G19320.2 60.256 78 31 0 24 101 12 89 2.52e-27 104
Msa0127100 AT5G43070.1 36.709 79 48 1 23 101 39 115 7.85e-13 61.2
Msa0127100 AT1G47200.1 35.897 78 48 1 24 101 56 131 1.52e-12 60.8

Find 127 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACCGTCACTGGAAATTT+TGG 0.158218 1_3:+56316887 Msa0127100:three_prime_UTR
GCAACTTAAATCCAGGTTTC+TGG 0.190819 1_3:-56317136 None:intergenic
GTTTCTAGGTTCTGTTGATA+TGG 0.260007 1_3:+56315728 Msa0127100:intron
CCTCAGTTATTTGAACTTAG+AGG 0.267220 1_3:+56316824 Msa0127100:three_prime_UTR
CGTCTCCAGTCATGTTATTA+TGG 0.271627 1_3:-56316575 None:intergenic
ACCTGACATGCTGGGTCCTT+TGG 0.274094 1_3:+56317225 Msa0127100:three_prime_UTR
CATATCTTTGTAAAAGAGTT+TGG 0.287321 1_3:-56316195 None:intergenic
GGTCGCAGAGCTTTCATTAA+TGG 0.293994 1_3:+56316136 Msa0127100:three_prime_UTR
ATGTCTATTGCAAACATAAT+TGG 0.305651 1_3:-56317397 None:intergenic
CAAGAGGGAAGGAGGAGAAT+GGG 0.312236 1_3:+56316056 Msa0127100:three_prime_UTR
TTGCTCTTGCTGAAGCGCTT+GGG 0.313724 1_3:+56316691 Msa0127100:three_prime_UTR
TGTTTCAGTAATAGAAGTTT+TGG 0.325309 1_3:+56316216 Msa0127100:three_prime_UTR
TTCATCTTTCAATTCATTCT+CGG 0.330579 1_3:-56317000 None:intergenic
ACTTCAATAGCTTCTGCTTC+TGG 0.333568 1_3:-56316330 None:intergenic
ATATATGTTCTTAATATATC+TGG 0.334642 1_3:+56317506 Msa0127100:three_prime_UTR
GTTGCTCTTGCTGAAGCGCT+TGG 0.338191 1_3:+56316690 Msa0127100:three_prime_UTR
CCATTCTCCTCCTTCCCTCT+TGG 0.345911 1_3:-56316055 None:intergenic
GTCGCAGAGCTTTCATTAAT+GGG 0.352818 1_3:+56316137 Msa0127100:three_prime_UTR
TCATCAACGTCCTCTCCTTC+AGG 0.355513 1_3:-56317259 None:intergenic
ATATCTGGCAAGACAAGAAA+TGG 0.359192 1_3:+56317521 Msa0127100:three_prime_UTR
TGAGATTTAAGAAGATTCAT+AGG 0.375062 1_3:+56317336 Msa0127100:three_prime_UTR
TGTGAAACGTTCCCCAGCTT+TGG 0.391512 1_3:+56316623 Msa0127100:three_prime_UTR
AGCCCTTGCTAATGCTTTGA+AGG 0.393810 1_3:+56316860 Msa0127100:three_prime_UTR
CCCTTCCACTGAGAAGCTTA+AGG 0.398979 1_3:+56316542 Msa0127100:three_prime_UTR
CCAAGAGGGAAGGAGGAGAA+TGG 0.407320 1_3:+56316055 Msa0127100:three_prime_UTR
AGAGCTTCTAAAACCATTGA+TGG 0.410753 1_3:+56316170 Msa0127100:three_prime_UTR
ACATAAGCTTACTCGATTCC+TGG 0.413331 1_3:-56316012 None:intergenic
GAAGGAATCTGCACCGTCAC+TGG 0.422448 1_3:+56316878 Msa0127100:three_prime_UTR
AAAGAGTTTGGTCCCATCAA+TGG 0.422926 1_3:-56316183 None:intergenic
CACCCATGGCATTATTTGAC+AGG 0.423148 1_3:-56316404 None:intergenic
TCCAAAGGACCCAGCATGTC+AGG 0.424980 1_3:-56317226 None:intergenic
TGCTACTTCAGATTATTTGT+AGG 0.427365 1_3:+56317374 Msa0127100:three_prime_UTR
GAGCTTTATTTGATGAATGA+TGG 0.428296 1_3:+56316480 Msa0127100:three_prime_UTR
ACAAATTTGATCACATGGTC+TGG 0.437019 1_3:+56317086 Msa0127100:three_prime_UTR
TGGGGAGTTGATATCTGAAA+AGG 0.439605 1_3:+56316075 Msa0127100:three_prime_UTR
AAATAATGCCATGGGTGAAA+AGG 0.442002 1_3:+56316410 Msa0127100:three_prime_UTR
GCCAACTTCATTTCTGATGA+AGG 0.446090 1_3:+56317170 Msa0127100:three_prime_UTR
CACCGAAAATCTTCCAAAGC+TGG 0.450378 1_3:-56316636 None:intergenic
AATAATGCCATGGGTGAAAA+GGG 0.461364 1_3:+56316411 Msa0127100:three_prime_UTR
AGAAAATAGACGGAGTCGTC+AGG 0.468919 1_3:-56315851 None:intergenic
GGAAATGAATTGCCAGCAAA+AGG 0.470098 1_3:-56317584 None:intergenic
CGGTGTTCATCTACCAGAGT+AGG 0.471423 1_3:+56316654 Msa0127100:three_prime_UTR
AGGTGCAGGTTTAATTAGTA+AGG 0.472052 1_3:+56317022 Msa0127100:three_prime_UTR
ATCTTTAATTGATATTAGCA+TGG 0.476224 1_3:-56316265 None:intergenic
CCTTAAATCACAAAATGACT+TGG 0.476235 1_3:+56316455 Msa0127100:three_prime_UTR
GGCCTCCAAGTCAGAGTACT+AGG 0.483558 1_3:+56315799 Msa0127100:CDS
AAATGGGCAAATGGTATGAA+TGG 0.483563 1_3:+56317538 Msa0127100:three_prime_UTR
ATCGAGTAAGCTTATGTTGG+AGG 0.487701 1_3:+56316018 Msa0127100:CDS
ACCGAAAATCTTCCAAAGCT+GGG 0.488948 1_3:-56316635 None:intergenic
GAAGCTGTTGTCCAGAAACC+TGG 0.491319 1_3:+56317125 Msa0127100:three_prime_UTR
CGGATAAATTTAACTTGGTG+AGG 0.494899 1_3:-56316980 None:intergenic
TGCTCTTGCTGAAGCGCTTG+GGG 0.498032 1_3:+56316692 Msa0127100:three_prime_UTR
TAAATCACAAAATGACTTGG+AGG 0.498668 1_3:+56316458 Msa0127100:three_prime_UTR
CAAGACAAGAAATGGGCAAA+TGG 0.499438 1_3:+56317529 Msa0127100:three_prime_UTR
GAGAATGAATTGAAAGATGA+AGG 0.503082 1_3:+56317002 Msa0127100:three_prime_UTR
CATTTCCATAATAACATGAC+TGG 0.503127 1_3:+56316570 Msa0127100:three_prime_UTR
AACATGTTTGGTGTGGAAGC+TGG 0.506518 1_3:+56316750 Msa0127100:three_prime_UTR
CCAACTTCATTTCTGATGAA+GGG 0.507173 1_3:+56317171 Msa0127100:three_prime_UTR
GATTTGCGTGACAACATGTT+TGG 0.507634 1_3:+56316738 Msa0127100:three_prime_UTR
AATTAAAGATCAACTGAAAG+AGG 0.511896 1_3:+56316278 Msa0127100:three_prime_UTR
TCTGTAAGATCAGCAAATAC+AGG 0.513065 1_3:-56316795 None:intergenic
ATATTCAGCAACTTAAATCC+AGG 0.517009 1_3:-56317143 None:intergenic
GCAGAACTCCCATCACCATC+AGG 0.519389 1_3:-56315975 None:intergenic
TGCGACCCAACACTTTGAAA+AGG 0.522092 1_3:+56315950 Msa0127100:CDS
ACCTTAAGCTTCTCAGTGGA+AGG 0.523910 1_3:-56316543 None:intergenic
GGGGAGTTGATATCTGAAAA+GGG 0.524553 1_3:+56316076 Msa0127100:three_prime_UTR
TATATTATTGCATAGGATTG+TGG 0.526265 1_3:+56315127 Msa0127100:intron
TCTTTAATTGATATTAGCAT+GGG 0.527745 1_3:-56316264 None:intergenic
CTGCTGTGCAAATTTATGCC+AGG 0.528761 1_3:+56315994 Msa0127100:CDS
AACCTAGTACTCTGACTTGG+AGG 0.528886 1_3:-56315801 None:intergenic
ATGAATCTTCTTAAATCTCA+AGG 0.529266 1_3:-56317333 None:intergenic
GAAAAGGAGCCTGATGGTGA+TGG 0.530765 1_3:+56315966 Msa0127100:CDS
TAACAAAGATGAGGCTGAGA+AGG 0.532357 1_3:+56315893 Msa0127100:CDS
AACAGCTTCTGCCAACAGCT+TGG 0.534878 1_3:-56317111 None:intergenic
TGTTAGTTGAACGAATGGTC+AGG 0.535510 1_3:+56315826 Msa0127100:CDS
TAACCTGTCAAATAATGCCA+TGG 0.536436 1_3:+56316401 Msa0127100:three_prime_UTR
ATTCTCGGATAAATTTAACT+TGG 0.537197 1_3:-56316985 None:intergenic
CCCTTCATCAGAAATGAAGT+TGG 0.537535 1_3:-56317171 None:intergenic
TATCTGGCAAGACAAGAAAT+GGG 0.538330 1_3:+56317522 Msa0127100:three_prime_UTR
TTTGTGATTTAAGGAGTGCC+CGG 0.539029 1_3:-56316446 None:intergenic
AGGTTTAATTAGTAAGGCGC+TGG 0.544570 1_3:+56317028 Msa0127100:three_prime_UTR
AAGAGGGAAGGAGGAGAATG+GGG 0.549859 1_3:+56316057 Msa0127100:three_prime_UTR
GTTGATGTTAGTTGAACGAA+TGG 0.555548 1_3:+56315821 Msa0127100:CDS
TCTACCAGAGTAGGCTCTGA+AGG 0.560072 1_3:+56316663 Msa0127100:three_prime_UTR
GAAGGATGCAAAGGAAATTG+AGG 0.561870 1_3:+56315911 Msa0127100:CDS
AAGAGGACCAAGAGGGAAGG+AGG 0.565309 1_3:+56316048 Msa0127100:three_prime_UTR
ATCAACCTAGTACTCTGACT+TGG 0.566163 1_3:-56315804 None:intergenic
ATTCCTTCAAAGCATTAGCA+AGG 0.570197 1_3:-56316863 None:intergenic
AGGAGAGGACGTTGATGAAG+AGG 0.572691 1_3:+56317264 Msa0127100:three_prime_UTR
AGTAAGGCGCTGGAAGGTCG+TGG 0.574225 1_3:+56317038 Msa0127100:three_prime_UTR
TTCCTTCAAAGCATTAGCAA+GGG 0.575261 1_3:-56316862 None:intergenic
GAGCTTCTAAAACCATTGAT+GGG 0.582760 1_3:+56316171 Msa0127100:three_prime_UTR
GAACACTTTCAATCAAGTTG+TGG 0.586485 1_3:+56315778 Msa0127100:CDS
AACCTGTCAAATAATGCCAT+GGG 0.587490 1_3:+56316402 Msa0127100:three_prime_UTR
TCAGGATCATTCTCATCCAA+AGG 0.589310 1_3:-56317241 None:intergenic
GGAATCGAGTAAGCTTATGT+TGG 0.591102 1_3:+56316015 Msa0127100:CDS
GACTTGGAGTCAAAACTGAA+AGG 0.592400 1_3:+56317310 Msa0127100:three_prime_UTR
ACCACCTTCAGAGCCTACTC+TGG 0.593405 1_3:-56316667 None:intergenic
ATGGTCTGGAGCCAAGCTGT+TGG 0.593553 1_3:+56317100 Msa0127100:three_prime_UTR
TGATTCTGATAATGATGACT+TGG 0.594422 1_3:+56317294 Msa0127100:three_prime_UTR
TTAATTAGTAAGGCGCTGGA+AGG 0.600794 1_3:+56317032 Msa0127100:three_prime_UTR
GAATTGAAAGATGAAGGTGC+AGG 0.601464 1_3:+56317008 Msa0127100:three_prime_UTR
TAATGCCATGGGTGAAAAGG+GGG 0.611795 1_3:+56316413 Msa0127100:three_prime_UTR
AAGCACGACTCAGCAATCAA+AGG 0.617202 1_3:-56317605 None:intergenic
AAAAGGAGCCTGATGGTGAT+GGG 0.618474 1_3:+56315967 Msa0127100:CDS
TACTTTCTAGAGAAAATAGA+CGG 0.618656 1_3:-56315861 None:intergenic
GATGAATGATGGTATATCAG+AGG 0.619244 1_3:+56316491 Msa0127100:three_prime_UTR
TGAGGCTGAGAAGGATGCAA+AGG 0.619486 1_3:+56315902 Msa0127100:CDS
ATATCCAAAATTTCCAGTGA+CGG 0.620331 1_3:-56316891 None:intergenic
GAAAAGAGGACCAAGAGGGA+AGG 0.620402 1_3:+56316045 Msa0127100:exon
CACTTTGAAAAGGAGCCTGA+TGG 0.620964 1_3:+56315960 Msa0127100:CDS
CCTTAAGCTTCTCAGTGGAA+GGG 0.628373 1_3:-56316542 None:intergenic
TGAGTACAAATTTGATCACA+TGG 0.630339 1_3:+56317081 Msa0127100:three_prime_UTR
CCGAAAATCTTCCAAAGCTG+GGG 0.630768 1_3:-56316634 None:intergenic
TTGGATGAGAATGATCCTGA+AGG 0.631234 1_3:+56317244 Msa0127100:three_prime_UTR
ATAATGCCATGGGTGAAAAG+GGG 0.631439 1_3:+56316412 Msa0127100:three_prime_UTR
TGAGAATGATCCTGAAGGAG+AGG 0.636079 1_3:+56317249 Msa0127100:three_prime_UTR
TGATTGAAAGTGTTCGATGT+TGG 0.637029 1_3:-56315770 None:intergenic
AATAACATGACTGGAGACGA+AGG 0.637173 1_3:+56316579 Msa0127100:three_prime_UTR
TGGACTTCTTAACAAAGATG+AGG 0.646938 1_3:+56315884 Msa0127100:CDS
AAGAACCTTAAGCTTCTCAG+TGG 0.653888 1_3:-56316547 None:intergenic
CCTCTAAGTTCAAATAACTG+AGG 0.660358 1_3:-56316824 None:intergenic
GCAGAGCTTTCATTAATGGG+AGG 0.660597 1_3:+56316140 Msa0127100:three_prime_UTR
GCGTGACAACATGTTTGGTG+TGG 0.661175 1_3:+56316743 Msa0127100:three_prime_UTR
TATTTGAACTTAGAGGACGA+TGG 0.662229 1_3:+56316831 Msa0127100:three_prime_UTR
ACCAGAGTAGGCTCTGAAGG+TGG 0.671940 1_3:+56316666 Msa0127100:three_prime_UTR
AGTGTTCGATGTTGGTACGA+CGG 0.709109 1_3:-56315762 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTAATAAAGATATATT+TGG - chr1_3:56314691-56314710 None:intergenic 10.0%
!! TGATGATTAAAAAAATTAGT+TGG - chr1_3:56314774-56314793 None:intergenic 15.0%
!!! TTTTTCATATGGTATAATTA+TGG + chr1_3:56315327-56315346 Msa0127100:intron 15.0%
!!! CATTTTAATTTTTGAAAACT+TGG + chr1_3:56315415-56315434 Msa0127100:intron 15.0%
!!! GATATATTTTAACAACAATA+GGG - chr1_3:56315544-56315563 None:intergenic 15.0%
!!! TTGATTTTGATTTTATACTA+TGG + chr1_3:56315588-56315607 Msa0127100:intron 15.0%
!!! ATTAATGAATTTTTAAGAGT+AGG + chr1_3:56315630-56315649 Msa0127100:intron 15.0%
!! ATATATGTTCTTAATATATC+TGG + chr1_3:56317506-56317525 Msa0127100:three_prime_UTR 15.0%
!! TTGAAAATGAAAAAATGTGA+TGG - chr1_3:56314637-56314656 None:intergenic 20.0%
!! CTTATACTATATTATTGCAT+AGG + chr1_3:56315120-56315139 Msa0127100:intron 20.0%
!!! CGATATATTTTAACAACAAT+AGG - chr1_3:56315545-56315564 None:intergenic 20.0%
!!! TTATTGTTATACTTGTTTCT+AGG + chr1_3:56315714-56315733 Msa0127100:intron 20.0%
!! TCTTTAATTGATATTAGCAT+GGG - chr1_3:56316267-56316286 None:intergenic 20.0%
!! ATCTTTAATTGATATTAGCA+TGG - chr1_3:56316268-56316287 None:intergenic 20.0%
!!! AGATTTTTGATTTCATAACT+TGG + chr1_3:56317464-56317483 Msa0127100:three_prime_UTR 20.0%
!!! TATGAATGGTAGAAATTTTT+GGG + chr1_3:56317552-56317571 Msa0127100:three_prime_UTR 20.0%
!! AAATGAAAAAATGTGATGGA+TGG - chr1_3:56314633-56314652 None:intergenic 25.0%
!!! TTCAGTTCTGTTTCATTTTT+AGG + chr1_3:56314976-56314995 Msa0127100:intron 25.0%
!!! TCAGTTCTGTTTCATTTTTA+GGG + chr1_3:56314977-56314996 Msa0127100:intron 25.0%
! TTACTTCTACAAAGTAACTA+TGG - chr1_3:56315025-56315044 None:intergenic 25.0%
! TATATTATTGCATAGGATTG+TGG + chr1_3:56315127-56315146 Msa0127100:intron 25.0%
!!! TGTTGTTTGATTTGAAATAC+CGG + chr1_3:56315217-56315236 Msa0127100:intron 25.0%
!! TGCTTGATATGTTTTTCATA+TGG + chr1_3:56315316-56315335 Msa0127100:intron 25.0%
!!! TGCGCAAATTAATCTTTTTT+AGG + chr1_3:56315372-56315391 Msa0127100:intron 25.0%
!!! GCGCAAATTAATCTTTTTTA+GGG + chr1_3:56315373-56315392 Msa0127100:intron 25.0%
!! TACTTTCTAGAGAAAATAGA+CGG - chr1_3:56315864-56315883 None:intergenic 25.0%
!!! TCTATTTTCTCTAGAAAGTA+TGG + chr1_3:56315864-56315883 Msa0127100:CDS 25.0%
!!! AAACTGTTTTTGACATTTCT+GGG + chr1_3:56316113-56316132 Msa0127100:three_prime_UTR 25.0%
! CATATCTTTGTAAAAGAGTT+TGG - chr1_3:56316198-56316217 None:intergenic 25.0%
!! TGTTTCAGTAATAGAAGTTT+TGG + chr1_3:56316216-56316235 Msa0127100:three_prime_UTR 25.0%
! AATTAAAGATCAACTGAAAG+AGG + chr1_3:56316278-56316297 Msa0127100:three_prime_UTR 25.0%
!! ATATTTTCTTCTGCATTAGA+AGG + chr1_3:56316360-56316379 Msa0127100:three_prime_UTR 25.0%
! ATTCTCGGATAAATTTAACT+TGG - chr1_3:56316988-56317007 None:intergenic 25.0%
! TTCATCTTTCAATTCATTCT+CGG - chr1_3:56317003-56317022 None:intergenic 25.0%
! ATGAATCTTCTTAAATCTCA+AGG - chr1_3:56317336-56317355 None:intergenic 25.0%
! TGAGATTTAAGAAGATTCAT+AGG + chr1_3:56317336-56317355 Msa0127100:three_prime_UTR 25.0%
! ATGTCTATTGCAAACATAAT+TGG - chr1_3:56317400-56317419 None:intergenic 25.0%
!! GTATGAATGGTAGAAATTTT+TGG + chr1_3:56317551-56317570 Msa0127100:three_prime_UTR 25.0%
! ACTGCACTTTATCTTTTTCT+AGG + chr1_3:56314831-56314850 Msa0127100:intron 30.0%
! CTGCACTTTATCTTTTTCTA+GGG + chr1_3:56314832-56314851 Msa0127100:intron 30.0%
GTGACTATAAATTACAGATC+CGG - chr1_3:56315239-56315258 None:intergenic 30.0%
ATCGCTATATATGCATATTG+TGG + chr1_3:56315561-56315580 Msa0127100:intron 30.0%
!!! GAAACTGTTTTTGACATTTC+TGG + chr1_3:56316112-56316131 Msa0127100:three_prime_UTR 30.0%
!!! AACTGTTTTTGACATTTCTG+GGG + chr1_3:56316114-56316133 Msa0127100:three_prime_UTR 30.0%
!!! CAGTAATAGAAGTTTTGGTT+TGG + chr1_3:56316221-56316240 Msa0127100:three_prime_UTR 30.0%
! ATCTGTCAGATTTTATTGCT+GGG + chr1_3:56316304-56316323 Msa0127100:three_prime_UTR 30.0%
!! CCAAGTCATTTTGTGATTTA+AGG - chr1_3:56316458-56316477 None:intergenic 30.0%
CCTTAAATCACAAAATGACT+TGG + chr1_3:56316455-56316474 Msa0127100:three_prime_UTR 30.0%
! TAAATCACAAAATGACTTGG+AGG + chr1_3:56316458-56316477 Msa0127100:three_prime_UTR 30.0%
!! GAGCTTTATTTGATGAATGA+TGG + chr1_3:56316480-56316499 Msa0127100:three_prime_UTR 30.0%
CATTTCCATAATAACATGAC+TGG + chr1_3:56316570-56316589 Msa0127100:three_prime_UTR 30.0%
ATATCCAAAATTTCCAGTGA+CGG - chr1_3:56316894-56316913 None:intergenic 30.0%
GAGAATGAATTGAAAGATGA+AGG + chr1_3:56317002-56317021 Msa0127100:three_prime_UTR 30.0%
TGAGTACAAATTTGATCACA+TGG + chr1_3:56317081-56317100 Msa0127100:three_prime_UTR 30.0%
ATATTCAGCAACTTAAATCC+AGG - chr1_3:56317146-56317165 None:intergenic 30.0%
! TGATTCTGATAATGATGACT+TGG + chr1_3:56317294-56317313 Msa0127100:three_prime_UTR 30.0%
! TGCTACTTCAGATTATTTGT+AGG + chr1_3:56317374-56317393 Msa0127100:three_prime_UTR 30.0%
AGAGAAGAGAAAGAAAAGAG+GGG - chr1_3:56314921-56314940 None:intergenic 35.0%
CAGAGAAGAGAAAGAAAAGA+GGG - chr1_3:56314922-56314941 None:intergenic 35.0%
CATAGGATTGTGGTCAAATA+GGG + chr1_3:56315137-56315156 Msa0127100:intron 35.0%
! CCAGATTTTCGATATCAAAG+CGG - chr1_3:56315171-56315190 None:intergenic 35.0%
AGAGACCTTGTTCAAATCAA+GGG - chr1_3:56315292-56315311 None:intergenic 35.0%
!!! TGAGTCTTCTGCTGTTTTTT+AGG + chr1_3:56315655-56315674 Msa0127100:intron 35.0%
! GTTTCTAGGTTCTGTTGATA+TGG + chr1_3:56315728-56315747 Msa0127100:intron 35.0%
!! TGATTGAAAGTGTTCGATGT+TGG - chr1_3:56315773-56315792 None:intergenic 35.0%
! GAACACTTTCAATCAAGTTG+TGG + chr1_3:56315778-56315797 Msa0127100:CDS 35.0%
GTTGATGTTAGTTGAACGAA+TGG + chr1_3:56315821-56315840 Msa0127100:CDS 35.0%
TGGACTTCTTAACAAAGATG+AGG + chr1_3:56315884-56315903 Msa0127100:CDS 35.0%
!!! ATGTTGGAGGTTTTGAAAAG+AGG + chr1_3:56316031-56316050 Msa0127100:exon 35.0%
!! TTTTGAAAAGAGGACCAAGA+GGG + chr1_3:56316041-56316060 Msa0127100:exon 35.0%
!!! ACTGTTTTTGACATTTCTGG+GGG + chr1_3:56316115-56316134 Msa0127100:three_prime_UTR 35.0%
!! AGAGCTTCTAAAACCATTGA+TGG + chr1_3:56316170-56316189 Msa0127100:three_prime_UTR 35.0%
!! GAGCTTCTAAAACCATTGAT+GGG + chr1_3:56316171-56316190 Msa0127100:three_prime_UTR 35.0%
! GATCTGTCAGATTTTATTGC+TGG + chr1_3:56316303-56316322 Msa0127100:three_prime_UTR 35.0%
TAACCTGTCAAATAATGCCA+TGG + chr1_3:56316401-56316420 Msa0127100:three_prime_UTR 35.0%
AACCTGTCAAATAATGCCAT+GGG + chr1_3:56316402-56316421 Msa0127100:three_prime_UTR 35.0%
AAATAATGCCATGGGTGAAA+AGG + chr1_3:56316410-56316429 Msa0127100:three_prime_UTR 35.0%
AATAATGCCATGGGTGAAAA+GGG + chr1_3:56316411-56316430 Msa0127100:three_prime_UTR 35.0%
GATGAATGATGGTATATCAG+AGG + chr1_3:56316491-56316510 Msa0127100:three_prime_UTR 35.0%
TCTGTAAGATCAGCAAATAC+AGG - chr1_3:56316798-56316817 None:intergenic 35.0%
CCTCTAAGTTCAAATAACTG+AGG - chr1_3:56316827-56316846 None:intergenic 35.0%
CCTCAGTTATTTGAACTTAG+AGG + chr1_3:56316824-56316843 Msa0127100:three_prime_UTR 35.0%
TATTTGAACTTAGAGGACGA+TGG + chr1_3:56316831-56316850 Msa0127100:three_prime_UTR 35.0%
! TTCCTTCAAAGCATTAGCAA+GGG - chr1_3:56316865-56316884 None:intergenic 35.0%
! ATTCCTTCAAAGCATTAGCA+AGG - chr1_3:56316866-56316885 None:intergenic 35.0%
! GTCACTGGAAATTTTGGATA+TGG + chr1_3:56316893-56316912 Msa0127100:three_prime_UTR 35.0%
! TGGAAATTTTGGATATGGCT+GGG + chr1_3:56316898-56316917 Msa0127100:three_prime_UTR 35.0%
!! CGGATAAATTTAACTTGGTG+AGG - chr1_3:56316983-56317002 None:intergenic 35.0%
AGGTGCAGGTTTAATTAGTA+AGG + chr1_3:56317022-56317041 Msa0127100:three_prime_UTR 35.0%
ACAAATTTGATCACATGGTC+TGG + chr1_3:56317086-56317105 Msa0127100:three_prime_UTR 35.0%
CCAACTTCATTTCTGATGAA+GGG + chr1_3:56317171-56317190 Msa0127100:three_prime_UTR 35.0%
ATATCTGGCAAGACAAGAAA+TGG + chr1_3:56317521-56317540 Msa0127100:three_prime_UTR 35.0%
TATCTGGCAAGACAAGAAAT+GGG + chr1_3:56317522-56317541 Msa0127100:three_prime_UTR 35.0%
AAATGGGCAAATGGTATGAA+TGG + chr1_3:56317538-56317557 Msa0127100:three_prime_UTR 35.0%
! TGGTGGCGTTTAAAAAAAGC+TGG + chr1_3:56314582-56314601 Msa0127100:intron 40.0%
! TAGTTGGAGCCTTTTTATGC+TGG - chr1_3:56314758-56314777 None:intergenic 40.0%
AGAGAAAGAAAAGAGGGGAA+TGG - chr1_3:56314916-56314935 None:intergenic 40.0%
GCAGAGAAGAGAAAGAAAAG+AGG - chr1_3:56314923-56314942 None:intergenic 40.0%
CAAAGTAACTATGGCGCTAT+GGG - chr1_3:56315016-56315035 None:intergenic 40.0%
ACAAAGTAACTATGGCGCTA+TGG - chr1_3:56315017-56315036 None:intergenic 40.0%
GCATAGGATTGTGGTCAAAT+AGG + chr1_3:56315136-56315155 Msa0127100:intron 40.0%
CCGCTTTGATATCGAAAATC+TGG + chr1_3:56315168-56315187 Msa0127100:intron 40.0%
GAGACCTTGTTCAAATCAAG+GGG - chr1_3:56315291-56315310 None:intergenic 40.0%
CAGAGACCTTGTTCAAATCA+AGG - chr1_3:56315293-56315312 None:intergenic 40.0%
! CTTGATTTGAACAAGGTCTC+TGG + chr1_3:56315291-56315310 Msa0127100:intron 40.0%
CCTCAGATTAATCAGTCCTT+GGG - chr1_3:56315449-56315468 None:intergenic 40.0%
CCAAGGACTGATTAATCTGA+GGG + chr1_3:56315447-56315466 Msa0127100:intron 40.0%
CAAGGACTGATTAATCTGAG+GGG + chr1_3:56315448-56315467 Msa0127100:intron 40.0%
!!! TTCTGCTGTTTTTTAGGCAC+TGG + chr1_3:56315661-56315680 Msa0127100:intron 40.0%
ATCAACCTAGTACTCTGACT+TGG - chr1_3:56315807-56315826 None:intergenic 40.0%
TGTTAGTTGAACGAATGGTC+AGG + chr1_3:56315826-56315845 Msa0127100:CDS 40.0%
TAACAAAGATGAGGCTGAGA+AGG + chr1_3:56315893-56315912 Msa0127100:CDS 40.0%
GAAGGATGCAAAGGAAATTG+AGG + chr1_3:56315911-56315930 Msa0127100:CDS 40.0%
!! AGGCTCCTTTTCAAAGTGTT+GGG - chr1_3:56315958-56315977 None:intergenic 40.0%
ACATAAGCTTACTCGATTCC+TGG - chr1_3:56316015-56316034 None:intergenic 40.0%
GGAATCGAGTAAGCTTATGT+TGG + chr1_3:56316015-56316034 Msa0127100:CDS 40.0%
ATCGAGTAAGCTTATGTTGG+AGG + chr1_3:56316018-56316037 Msa0127100:CDS 40.0%
!!! GTTTTGAAAAGAGGACCAAG+AGG + chr1_3:56316040-56316059 Msa0127100:exon 40.0%
!! TGGGGAGTTGATATCTGAAA+AGG + chr1_3:56316075-56316094 Msa0127100:three_prime_UTR 40.0%
!! GGGGAGTTGATATCTGAAAA+GGG + chr1_3:56316076-56316095 Msa0127100:three_prime_UTR 40.0%
GTCGCAGAGCTTTCATTAAT+GGG + chr1_3:56316137-56316156 Msa0127100:three_prime_UTR 40.0%
AAAGAGTTTGGTCCCATCAA+TGG - chr1_3:56316186-56316205 None:intergenic 40.0%
ACTTCAATAGCTTCTGCTTC+TGG - chr1_3:56316333-56316352 None:intergenic 40.0%
ATAATGCCATGGGTGAAAAG+GGG + chr1_3:56316412-56316431 Msa0127100:three_prime_UTR 40.0%
!! TTTGTGATTTAAGGAGTGCC+CGG - chr1_3:56316449-56316468 None:intergenic 40.0%
AAGAACCTTAAGCTTCTCAG+TGG - chr1_3:56316550-56316569 None:intergenic 40.0%
CGTCTCCAGTCATGTTATTA+TGG - chr1_3:56316578-56316597 None:intergenic 40.0%
AATAACATGACTGGAGACGA+AGG + chr1_3:56316579-56316598 Msa0127100:three_prime_UTR 40.0%
ACCGAAAATCTTCCAAAGCT+GGG - chr1_3:56316638-56316657 None:intergenic 40.0%
GATTTGCGTGACAACATGTT+TGG + chr1_3:56316738-56316757 Msa0127100:three_prime_UTR 40.0%
! CTGGAAATTTTGGATATGGC+TGG + chr1_3:56316897-56316916 Msa0127100:three_prime_UTR 40.0%
! GAATTGAAAGATGAAGGTGC+AGG + chr1_3:56317008-56317027 Msa0127100:three_prime_UTR 40.0%
AGGTTTAATTAGTAAGGCGC+TGG + chr1_3:56317028-56317047 Msa0127100:three_prime_UTR 40.0%
!! TTAATTAGTAAGGCGCTGGA+AGG + chr1_3:56317032-56317051 Msa0127100:three_prime_UTR 40.0%
GCAACTTAAATCCAGGTTTC+TGG - chr1_3:56317139-56317158 None:intergenic 40.0%
GCCAACTTCATTTCTGATGA+AGG + chr1_3:56317170-56317189 Msa0127100:three_prime_UTR 40.0%
CCCTTCATCAGAAATGAAGT+TGG - chr1_3:56317174-56317193 None:intergenic 40.0%
TAAAAACTCACCTGACATGC+TGG + chr1_3:56317216-56317235 Msa0127100:three_prime_UTR 40.0%
AAAAACTCACCTGACATGCT+GGG + chr1_3:56317217-56317236 Msa0127100:three_prime_UTR 40.0%
TCAGGATCATTCTCATCCAA+AGG - chr1_3:56317244-56317263 None:intergenic 40.0%
TTGGATGAGAATGATCCTGA+AGG + chr1_3:56317244-56317263 Msa0127100:three_prime_UTR 40.0%
GACTTGGAGTCAAAACTGAA+AGG + chr1_3:56317310-56317329 Msa0127100:three_prime_UTR 40.0%
CAAGACAAGAAATGGGCAAA+TGG + chr1_3:56317529-56317548 Msa0127100:three_prime_UTR 40.0%
GGAAATGAATTGCCAGCAAA+AGG - chr1_3:56317587-56317606 None:intergenic 40.0%
! GATATATTTGGAAGCGTGCG+TGG - chr1_3:56314679-56314698 None:intergenic 45.0%
TTTCCCGCTCCAGCATAAAA+AGG + chr1_3:56314746-56314765 Msa0127100:intron 45.0%
TGCGTTCTCATTTCTCACTC+AGG + chr1_3:56314882-56314901 Msa0127100:intron 45.0%
CCTTGTTCAAATCAAGGGGA+CGG - chr1_3:56315287-56315306 None:intergenic 45.0%
AAACTTGGTATCCAGTCCCA+AGG + chr1_3:56315430-56315449 Msa0127100:intron 45.0%
GATTAATCAGTCCTTGGGAC+TGG - chr1_3:56315444-56315463 None:intergenic 45.0%
CCCAAGGACTGATTAATCTG+AGG + chr1_3:56315446-56315465 Msa0127100:intron 45.0%
CCCTCAGATTAATCAGTCCT+TGG - chr1_3:56315450-56315469 None:intergenic 45.0%
TCAAATGGGACAACCACAAG+TGG - chr1_3:56315488-56315507 None:intergenic 45.0%
! CTCTTGCTCTGGCTTCAAAT+GGG - chr1_3:56315502-56315521 None:intergenic 45.0%
AGCAAGAGCAAAGCTCTGTA+TGG + chr1_3:56315514-56315533 Msa0127100:intron 45.0%
!!! CTGTTTTTTAGGCACTGGTG+AGG + chr1_3:56315666-56315685 Msa0127100:intron 45.0%
AGTGTTCGATGTTGGTACGA+CGG - chr1_3:56315765-56315784 None:intergenic 45.0%
!! AACCTAGTACTCTGACTTGG+AGG - chr1_3:56315804-56315823 None:intergenic 45.0%
AGAAAATAGACGGAGTCGTC+AGG - chr1_3:56315854-56315873 None:intergenic 45.0%
! TGCGACCCAACACTTTGAAA+AGG + chr1_3:56315950-56315969 Msa0127100:CDS 45.0%
! CAGGCTCCTTTTCAAAGTGT+TGG - chr1_3:56315959-56315978 None:intergenic 45.0%
! CACTTTGAAAAGGAGCCTGA+TGG + chr1_3:56315960-56315979 Msa0127100:CDS 45.0%
! AAAAGGAGCCTGATGGTGAT+GGG + chr1_3:56315967-56315986 Msa0127100:CDS 45.0%
CTGCTGTGCAAATTTATGCC+AGG + chr1_3:56315994-56316013 Msa0127100:CDS 45.0%
GGTCGCAGAGCTTTCATTAA+TGG + chr1_3:56316136-56316155 Msa0127100:three_prime_UTR 45.0%
GCAGAGCTTTCATTAATGGG+AGG + chr1_3:56316140-56316159 Msa0127100:three_prime_UTR 45.0%
CACCCATGGCATTATTTGAC+AGG - chr1_3:56316407-56316426 None:intergenic 45.0%
TAATGCCATGGGTGAAAAGG+GGG + chr1_3:56316413-56316432 Msa0127100:three_prime_UTR 45.0%
! AAAAGGGGGTTAGAGCATTC+CGG + chr1_3:56316427-56316446 Msa0127100:three_prime_UTR 45.0%
CCTTAAGCTTCTCAGTGGAA+GGG - chr1_3:56316545-56316564 None:intergenic 45.0%
ACCTTAAGCTTCTCAGTGGA+AGG - chr1_3:56316546-56316565 None:intergenic 45.0%
CCGAAAATCTTCCAAAGCTG+GGG - chr1_3:56316637-56316656 None:intergenic 45.0%
!!! CCCCAGCTTTGGAAGATTTT+CGG + chr1_3:56316634-56316653 Msa0127100:three_prime_UTR 45.0%
CACCGAAAATCTTCCAAAGC+TGG - chr1_3:56316639-56316658 None:intergenic 45.0%
!! AACATGTTTGGTGTGGAAGC+TGG + chr1_3:56316750-56316769 Msa0127100:three_prime_UTR 45.0%
AGCCCTTGCTAATGCTTTGA+AGG + chr1_3:56316860-56316879 Msa0127100:three_prime_UTR 45.0%
! TGCACCGTCACTGGAAATTT+TGG + chr1_3:56316887-56316906 Msa0127100:three_prime_UTR 45.0%
TGAGAATGATCCTGAAGGAG+AGG + chr1_3:56317249-56317268 Msa0127100:three_prime_UTR 45.0%
! GAGCCTTTTTATGCTGGAGC+GGG - chr1_3:56314752-56314771 None:intergenic 50.0%
! GGAGCCTTTTTATGCTGGAG+CGG - chr1_3:56314753-56314772 None:intergenic 50.0%
! CCGTCCCCTTGATTTGAACA+AGG + chr1_3:56315284-56315303 Msa0127100:intron 50.0%
GACAACCACAAGTGGACAGT+GGG - chr1_3:56315480-56315499 None:intergenic 50.0%
! GCTCTTGCTCTGGCTTCAAA+TGG - chr1_3:56315503-56315522 None:intergenic 50.0%
ACAGAGCTTTGCTCTTGCTC+TGG - chr1_3:56315513-56315532 None:intergenic 50.0%
TGAGGCTGAGAAGGATGCAA+AGG + chr1_3:56315902-56315921 Msa0127100:CDS 50.0%
! GAAAAGGAGCCTGATGGTGA+TGG + chr1_3:56315966-56315985 Msa0127100:CDS 50.0%
GAAAAGAGGACCAAGAGGGA+AGG + chr1_3:56316045-56316064 Msa0127100:exon 50.0%
CAAGAGGGAAGGAGGAGAAT+GGG + chr1_3:56316056-56316075 Msa0127100:three_prime_UTR 50.0%
AAGAGGGAAGGAGGAGAATG+GGG + chr1_3:56316057-56316076 Msa0127100:three_prime_UTR 50.0%
! TCTAACCCCCTTTTCACCCA+TGG - chr1_3:56316421-56316440 None:intergenic 50.0%
! AAAGGGGGTTAGAGCATTCC+GGG + chr1_3:56316428-56316447 Msa0127100:three_prime_UTR 50.0%
CCCTTCCACTGAGAAGCTTA+AGG + chr1_3:56316542-56316561 Msa0127100:three_prime_UTR 50.0%
TGTGAAACGTTCCCCAGCTT+TGG + chr1_3:56316623-56316642 Msa0127100:three_prime_UTR 50.0%
CGGTGTTCATCTACCAGAGT+AGG + chr1_3:56316654-56316673 Msa0127100:three_prime_UTR 50.0%
! TCTACCAGAGTAGGCTCTGA+AGG + chr1_3:56316663-56316682 Msa0127100:three_prime_UTR 50.0%
! TTGCTCTTGCTGAAGCGCTT+GGG + chr1_3:56316691-56316710 Msa0127100:three_prime_UTR 50.0%
! GCGTGACAACATGTTTGGTG+TGG + chr1_3:56316743-56316762 Msa0127100:three_prime_UTR 50.0%
AACAGCTTCTGCCAACAGCT+TGG - chr1_3:56317114-56317133 None:intergenic 50.0%
GAAGCTGTTGTCCAGAAACC+TGG + chr1_3:56317125-56317144 Msa0127100:three_prime_UTR 50.0%
TCATCAACGTCCTCTCCTTC+AGG - chr1_3:56317262-56317281 None:intergenic 50.0%
! AGGAGAGGACGTTGATGAAG+AGG + chr1_3:56317264-56317283 Msa0127100:three_prime_UTR 50.0%
! GGGCTTATTGTGCCTTTTGC+TGG + chr1_3:56317572-56317591 Msa0127100:three_prime_UTR 50.0%
GCGTGCGTGGAAAAACTGGA+GGG - chr1_3:56314666-56314685 None:intergenic 55.0%
AGCGTGCGTGGAAAAACTGG+AGG - chr1_3:56314667-56314686 None:intergenic 55.0%
! GGAAGCGTGCGTGGAAAAAC+TGG - chr1_3:56314670-56314689 None:intergenic 55.0%
CCACAAGTGGACAGTGGGAT+TGG - chr1_3:56315475-56315494 None:intergenic 55.0%
CCAATCCCACTGTCCACTTG+TGG + chr1_3:56315472-56315491 Msa0127100:intron 55.0%
GGACAACCACAAGTGGACAG+TGG - chr1_3:56315481-56315500 None:intergenic 55.0%
! GGCCTCCAAGTCAGAGTACT+AGG + chr1_3:56315799-56315818 Msa0127100:CDS 55.0%
GCAGAACTCCCATCACCATC+AGG - chr1_3:56315978-56315997 None:intergenic 55.0%
AAGAGGACCAAGAGGGAAGG+AGG + chr1_3:56316048-56316067 Msa0127100:three_prime_UTR 55.0%
CCATTCTCCTCCTTCCCTCT+TGG - chr1_3:56316058-56316077 None:intergenic 55.0%
CCAAGAGGGAAGGAGGAGAA+TGG + chr1_3:56316055-56316074 Msa0127100:three_prime_UTR 55.0%
!! ACCAGAGTAGGCTCTGAAGG+TGG + chr1_3:56316666-56316685 Msa0127100:three_prime_UTR 55.0%
ACCACCTTCAGAGCCTACTC+TGG - chr1_3:56316670-56316689 None:intergenic 55.0%
! GTTGCTCTTGCTGAAGCGCT+TGG + chr1_3:56316690-56316709 Msa0127100:three_prime_UTR 55.0%
! TGCTCTTGCTGAAGCGCTTG+GGG + chr1_3:56316692-56316711 Msa0127100:three_prime_UTR 55.0%
GAAGGAATCTGCACCGTCAC+TGG + chr1_3:56316878-56316897 Msa0127100:three_prime_UTR 55.0%
! ATGGTCTGGAGCCAAGCTGT+TGG + chr1_3:56317100-56317119 Msa0127100:three_prime_UTR 55.0%
ACCTGACATGCTGGGTCCTT+TGG + chr1_3:56317225-56317244 Msa0127100:three_prime_UTR 55.0%
TCCAAAGGACCCAGCATGTC+AGG - chr1_3:56317229-56317248 None:intergenic 55.0%
!! AGTAAGGCGCTGGAAGGTCG+TGG + chr1_3:56317038-56317057 Msa0127100:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56314581 56317622 56314581 ID=Msa0127100;Name=Msa0127100
chr1_3 mRNA 56314581 56317622 56314581 ID=Msa0127100-mRNA-1;Parent=Msa0127100;Name=Msa0127100-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.25|0.5|1|1|4|1576|110
chr1_3 exon 56314581 56314588 56314581 ID=Msa0127100-mRNA-1:exon:17715;Parent=Msa0127100-mRNA-1
chr1_3 exon 56315020 56315026 56315020 ID=Msa0127100-mRNA-1:exon:17716;Parent=Msa0127100-mRNA-1
chr1_3 exon 56315142 56315148 56315142 ID=Msa0127100-mRNA-1:exon:17717;Parent=Msa0127100-mRNA-1
chr1_3 exon 56315736 56317622 56315736 ID=Msa0127100-mRNA-1:exon:17718;Parent=Msa0127100-mRNA-1
chr1_3 CDS 56314581 56314588 56314581 ID=Msa0127100-mRNA-1:cds;Parent=Msa0127100-mRNA-1
chr1_3 CDS 56315020 56315026 56315020 ID=Msa0127100-mRNA-1:cds;Parent=Msa0127100-mRNA-1
chr1_3 CDS 56315142 56315148 56315142 ID=Msa0127100-mRNA-1:cds;Parent=Msa0127100-mRNA-1
chr1_3 CDS 56315736 56316046 56315736 ID=Msa0127100-mRNA-1:cds;Parent=Msa0127100-mRNA-1
chr1_3 three_prime_UTR 56316047 56317622 56316047 ID=Msa0127100-mRNA-1:three_prime_utr;Parent=Msa0127100-mRNA-1
Gene Sequence

>Msa0127100

ATGGTGGCCGCCATAGATTGTGGTTCTGTTGATATGGATTCTTCAGTACCGTCGTACCAACATCGAACACTTTCAATCAAGTTGTGGCCTCCAAGTCAGAGTACTAGGTTGATGTTAGTTGAACGAATGGTCAGGAACCTGACGACTCCGTCTATTTTCTCTAGAAAGTATGGACTTCTTAACAAAGATGAGGCTGAGAAGGATGCAAAGGAAATTGAGGATGCAGCTTTTGTGACTGCGACCCAACACTTTGAAAAGGAGCCTGATGGTGATGGGAGTTCTGCTGTGCAAATTTATGCCAGGAATCGAGTAAGCTTATGTTGGAGGTTTTGA

Protein sequence

>Msa0127100

MVAAIDCGSVDMDSSVPSYQHRTLSIKLWPPSQSTRLMLVERMVRNLTTPSIFSRKYGLLNKDEAEKDAKEIEDAAFVTATQHFEKEPDGDGSSAVQIYARNRVSLCWRF*