Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283590 | XP_013452184.2 | 98.058 | 309 | 5 | 1 | 1 | 308 | 1 | 309 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283590 | sp|Q6AY46|TRM61_RAT | 44.518 | 301 | 143 | 6 | 10 | 305 | 4 | 285 | 1.61e-79 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283590 | A0A072UAU6 | 98.058 | 309 | 5 | 1 | 1 | 308 | 1 | 309 | 0.0 | 625 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0283590 | 0.808187 | 3.502815e-50 | -8.615850e-47 |
| Msa0035130 | Msa0283590 | 0.812083 | 5.068246e-51 | -8.615850e-47 |
| Msa0262480 | Msa0283590 | 0.813204 | 2.881672e-51 | -8.615850e-47 |
| Msa0283590 | Msa0654870 | 0.807483 | 4.944137e-50 | -8.615850e-47 |
| Msa0283590 | Msa0666230 | 0.813354 | 2.671359e-51 | -8.615850e-47 |
| Msa0283590 | Msa0751010 | 0.801930 | 7.135790e-49 | -8.615850e-47 |
| Msa0283590 | Msa0794050 | 0.818699 | 1.710699e-52 | -8.615850e-47 |
| Msa0283590 | Msa0818770 | 0.826152 | 3.173018e-54 | -8.615850e-47 |
| Msa0283590 | Msa0928120 | 0.820891 | 5.396348e-53 | -8.615850e-47 |
| Msa0283590 | Msa0960830 | 0.803016 | 4.262806e-49 | -8.615850e-47 |
| Msa0283590 | Msa1019240 | 0.800593 | 1.340288e-48 | -8.615850e-47 |
| Msa0283590 | Msa1070390 | 0.809063 | 2.277461e-50 | -8.615850e-47 |
| Msa0283590 | Msa1131560 | 0.822986 | 1.766185e-53 | -8.615850e-47 |
| Msa0283590 | Msa1145240 | 0.805448 | 1.328511e-49 | -8.615850e-47 |
| Msa0283590 | Msa1166870 | 0.805819 | 1.110284e-49 | -8.615850e-47 |
| Msa0283590 | Msa1262890 | 0.811571 | 6.548975e-51 | -8.615850e-47 |
| Msa0283590 | Msa1299700 | 0.809842 | 1.549225e-50 | -8.615850e-47 |
| Msa0283590 | Msa1331250 | 0.800318 | 1.524510e-48 | -8.615850e-47 |
| Msa0283590 | Msa1433600 | 0.802793 | 4.739720e-49 | -8.615850e-47 |
| Msa0283590 | Msa1447180 | 0.817841 | 2.675037e-52 | -8.615850e-47 |
| Msa0283590 | Msa1459960 | 0.800257 | 1.569134e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283590 | MtrunA17_Chr6g0468581 | 98.058 | 309 | 5 | 1 | 1 | 308 | 1 | 309 | 0.0 | 625 |
| Msa0283590 | MtrunA17_Chr2g0282851 | 77.056 | 231 | 53 | 0 | 1 | 231 | 52 | 282 | 3.85e-136 | 387 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283590 | AT5G14600.1 | 73.651 | 315 | 76 | 2 | 1 | 308 | 1 | 315 | 3.01e-175 | 487 |
Find 104 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTTGTTGTTATGTATT+TGG | 0.132518 | 2_3:+20890330 | Msa0283590:CDS |
| ACATTCATGTGGAAGGTTTC+TGG | 0.180697 | 2_3:+20892519 | Msa0283590:three_prime_UTR |
| TGTCATTACTTACAACAATT+AGG | 0.207893 | 2_3:-20888268 | None:intergenic |
| TCCTAATTCTTCTTCTGTTA+TGG | 0.259735 | 2_3:+20892348 | Msa0283590:CDS |
| AACAATTAGTAACGGTGATT+TGG | 0.271982 | 2_3:+20890081 | Msa0283590:CDS |
| GATCCCTCGGATACCGTTAC+TGG | 0.281289 | 2_3:-20890136 | None:intergenic |
| TCCTGAAGAATTTGCTGGCT+TGG | 0.291582 | 2_3:+20891893 | Msa0283590:CDS |
| GTCATTACTTACAACAATTA+GGG | 0.296038 | 2_3:-20888267 | None:intergenic |
| CGAAGTTCGAGAAGGGAAAA+TGG | 0.297664 | 2_3:+20892234 | Msa0283590:CDS |
| CCAAACATGAATTTCCTATA+TGG | 0.311905 | 2_3:-20892554 | None:intergenic |
| TTGTTTATGTGAAAGATATA+AGG | 0.312566 | 2_3:+20892185 | Msa0283590:intron |
| GGTTGTGTCGTTCTTGAATC+TGG | 0.320717 | 2_3:+20890364 | Msa0283590:CDS |
| AAAACTAAAGTCCACAATTC+AGG | 0.328439 | 2_3:-20890271 | None:intergenic |
| GATTGGATAGGAAAGTCATT+TGG | 0.331486 | 2_3:+20890196 | Msa0283590:CDS |
| GTCTAAAGTATTCAGCAATA+AGG | 0.337791 | 2_3:+20890219 | Msa0283590:CDS |
| AGGAGAGTGGCCGGCGGCGG+TGG | 0.351227 | 2_3:-20888167 | None:intergenic |
| GCCAAGCCAGCAAATTCTTC+AGG | 0.357310 | 2_3:-20891894 | None:intergenic |
| GCCATAACAGAAGAAGAATT+AGG | 0.368158 | 2_3:-20892349 | None:intergenic |
| GGGTTTCCTGAAGAATTTGC+TGG | 0.381718 | 2_3:+20891888 | Msa0283590:CDS |
| ATGTATTTGGAGATTGTTCC+TGG | 0.385811 | 2_3:+20890343 | Msa0283590:CDS |
| AGGGATGACTTTGAGAAGAT+TGG | 0.392112 | 2_3:+20891819 | Msa0283590:intron |
| AACGGTGATGACGGCTCTAA+TGG | 0.392261 | 2_3:+20892271 | Msa0283590:CDS |
| CTTGAATCTGGTACTGGAAG+TGG | 0.400748 | 2_3:+20890376 | Msa0283590:CDS |
| CTTACAACAATTAGGGTTTG+TGG | 0.410748 | 2_3:-20888260 | None:intergenic |
| GGTAATTGTAATCTCCATAT+AGG | 0.412202 | 2_3:+20892540 | Msa0283590:three_prime_UTR |
| CCATATAGGAAATTCATGTT+TGG | 0.417762 | 2_3:+20892554 | Msa0283590:three_prime_UTR |
| ATTGGATAGGAAAGTCATTT+GGG | 0.422230 | 2_3:+20890197 | Msa0283590:CDS |
| CAAGACCCTTAAAATATTTG+AGG | 0.444586 | 2_3:+20892790 | Msa0283590:intron |
| TGGAGAAGGAGGAGAGTGGC+CGG | 0.445025 | 2_3:-20888176 | None:intergenic |
| AGGAGGAGAGTGGCCGGCGG+CGG | 0.452679 | 2_3:-20888170 | None:intergenic |
| ATGGAAAGCTTAGAGATTAA+CGG | 0.454257 | 2_3:+20892253 | Msa0283590:CDS |
| TACTCGTTTATTGAAAATGT+TGG | 0.456056 | 2_3:+20890024 | Msa0283590:exon |
| TTAGGGTTTGTGGAGAGAGA+TGG | 0.456557 | 2_3:-20888250 | None:intergenic |
| AGTGGCCGGCGGCGGTGGTG+TGG | 0.458026 | 2_3:-20888162 | None:intergenic |
| AAGACCCTTAAAATATTTGA+GGG | 0.458557 | 2_3:+20892791 | Msa0283590:intron |
| TCTAAAGTATTCAGCAATAA+GGG | 0.459899 | 2_3:+20890220 | Msa0283590:CDS |
| TTGCAAGAGGAGGCAACGTT+CGG | 0.460487 | 2_3:+20892303 | Msa0283590:CDS |
| GTGTGGTGTGGTGGAGCGAT+TGG | 0.467920 | 2_3:-20888145 | None:intergenic |
| GTCGTTCTTGAATCTGGTAC+TGG | 0.478619 | 2_3:+20890370 | Msa0283590:CDS |
| GCGGCGGTGGTGTGGTGTGG+TGG | 0.491503 | 2_3:-20888154 | None:intergenic |
| CCACACCACACCACCGCCGC+CGG | 0.499352 | 2_3:+20888157 | Msa0283590:five_prime_UTR |
| ACGGGAAGTACCGGTGAAGT+TGG | 0.505380 | 2_3:-20892054 | None:intergenic |
| CTTTAACTACTTCACTTGCA+AGG | 0.505822 | 2_3:+20890401 | Msa0283590:CDS |
| ATAGCTCTCAAAACTGAAGT+AGG | 0.506670 | 2_3:-20888225 | None:intergenic |
| GCAAGGGCAGTTGCTCCTAC+AGG | 0.518867 | 2_3:+20890418 | Msa0283590:CDS |
| CCGGCGGCGGTGGTGTGGTG+TGG | 0.529273 | 2_3:-20888157 | None:intergenic |
| TTGAATCTGGTACTGGAAGT+GGG | 0.536848 | 2_3:+20890377 | Msa0283590:CDS |
| CGTTGTACTTGTTCAATACA+CGG | 0.539892 | 2_3:-20892011 | None:intergenic |
| GTAATCCGCCACTGGATGGA+TGG | 0.541967 | 2_3:-20888196 | None:intergenic |
| ATTTGGCAATTGTTTATGCA+AGG | 0.545176 | 2_3:+20890098 | Msa0283590:CDS |
| ATAAGCAGCTTAGTCACTGC+GGG | 0.545723 | 2_3:+20891843 | Msa0283590:CDS |
| ATTCACAACATTCATGTGGA+AGG | 0.547599 | 2_3:+20892512 | Msa0283590:three_prime_UTR |
| AAATATTTGAGGGATAACCT+TGG | 0.550886 | 2_3:+20892801 | Msa0283590:intron |
| GCGGGAGTGAGGGACATTCA+AGG | 0.551907 | 2_3:+20891861 | Msa0283590:CDS |
| GCTTAGTCACTGCGGGAGTG+AGG | 0.551945 | 2_3:+20891850 | Msa0283590:CDS |
| TTCAAACATTCAGATTGGAT+AGG | 0.552647 | 2_3:+20890184 | Msa0283590:CDS |
| GAGAGTAATCCGCCACTGGA+TGG | 0.553739 | 2_3:-20888200 | None:intergenic |
| CACTGGATGGATGGAGAAGG+AGG | 0.564541 | 2_3:-20888187 | None:intergenic |
| GAACGTTGCCTCCTCTTGCA+AGG | 0.566361 | 2_3:-20892301 | None:intergenic |
| CTTAGTCACTGCGGGAGTGA+GGG | 0.567587 | 2_3:+20891851 | Msa0283590:CDS |
| GGAATAGCTAGCCAAGGTTG+AGG | 0.572196 | 2_3:-20891939 | None:intergenic |
| TAGCACCTACTCCTGAATTG+TGG | 0.573848 | 2_3:+20890260 | Msa0283590:CDS |
| CAACTTTACCGGTTGCGCCA+AGG | 0.574577 | 2_3:-20892818 | None:intergenic |
| ATGGTTCTCTTCCTTGCAAG+AGG | 0.575002 | 2_3:+20892290 | Msa0283590:CDS |
| TTTAACTACTTCACTTGCAA+GGG | 0.578833 | 2_3:+20890402 | Msa0283590:CDS |
| GTGAGGGACATTCAAGGTGA+GGG | 0.582946 | 2_3:+20891867 | Msa0283590:CDS |
| ACAATGCAATCCAACTTCAC+CGG | 0.584109 | 2_3:+20892044 | Msa0283590:CDS |
| GTTCTCTTCCTTGCAAGAGG+AGG | 0.584259 | 2_3:+20892293 | Msa0283590:CDS |
| GTTGTACTTGTTCAATACAC+GGG | 0.584848 | 2_3:-20892010 | None:intergenic |
| GATTCAAGAACGACACAACC+AGG | 0.585429 | 2_3:-20890361 | None:intergenic |
| GGATGAGAGTAATCCGCCAC+TGG | 0.586022 | 2_3:-20888204 | None:intergenic |
| CTCCTTCTCCATCCATCCAG+TGG | 0.588499 | 2_3:+20888188 | Msa0283590:five_prime_UTR |
| TTAGAGATTAACGGTGATGA+CGG | 0.592052 | 2_3:+20892262 | Msa0283590:CDS |
| CTTAATTCACAACATTCATG+TGG | 0.594752 | 2_3:+20892508 | Msa0283590:three_prime_UTR |
| AAAGTCCACAATTCAGGAGT+AGG | 0.594923 | 2_3:-20890265 | None:intergenic |
| TTTAATAGAACAATTAGTAA+CGG | 0.596180 | 2_3:+20890073 | Msa0283590:CDS |
| CGCCACTGGATGGATGGAGA+AGG | 0.603338 | 2_3:-20888190 | None:intergenic |
| AGTAACGGTATCCGAGGGAT+CGG | 0.604563 | 2_3:+20890138 | Msa0283590:CDS |
| GAAGCCAGTAACGGTATCCG+AGG | 0.607395 | 2_3:+20890132 | Msa0283590:CDS |
| CTTCTCCATCCATCCAGTGG+CGG | 0.609755 | 2_3:+20888191 | Msa0283590:five_prime_UTR |
| AACGTATAAACATGTCCTGT+AGG | 0.611682 | 2_3:-20890433 | None:intergenic |
| CGGACATACGAAGTTCGAGA+AGG | 0.611846 | 2_3:+20892226 | Msa0283590:CDS |
| CTCGAACTTCGTATGTCCGT+AGG | 0.612530 | 2_3:-20892222 | None:intergenic |
| TGACCTCTAGCTTCACCACA+TGG | 0.618356 | 2_3:-20892376 | None:intergenic |
| AAGAGGAGGCAACGTTCGGA+TGG | 0.621142 | 2_3:+20892307 | Msa0283590:CDS |
| GGACATACGAAGTTCGAGAA+GGG | 0.625372 | 2_3:+20892227 | Msa0283590:CDS |
| TGAGGGACATTCAAGGTGAG+GGG | 0.627956 | 2_3:+20891868 | Msa0283590:CDS |
| TCTGTTATGGCTAGACCATG+TGG | 0.628693 | 2_3:+20892361 | Msa0283590:CDS |
| ATTCTGTAAAACCGATCCCT+CGG | 0.629430 | 2_3:-20890149 | None:intergenic |
| AACAGAAGAAGAATTAGGAT+AGG | 0.630818 | 2_3:-20892344 | None:intergenic |
| ACGTTCGGATGGAGCTAGTG+TGG | 0.632897 | 2_3:+20892318 | Msa0283590:CDS |
| AACAAAGATCTGGATCAGCT+AGG | 0.636973 | 2_3:+20890467 | Msa0283590:CDS |
| AGACCATGTGGTGAAGCTAG+AGG | 0.638065 | 2_3:+20892373 | Msa0283590:CDS |
| AGTGAGGGACATTCAAGGTG+AGG | 0.642071 | 2_3:+20891866 | Msa0283590:CDS |
| GCTGAAGGAATAGCTAGCCA+AGG | 0.647664 | 2_3:-20891945 | None:intergenic |
| CATATAGAATCTGTGTCCTG+TGG | 0.649958 | 2_3:-20890297 | None:intergenic |
| TGGATGGAGAAGGAGGAGAG+TGG | 0.654741 | 2_3:-20888180 | None:intergenic |
| AGAAGGAGGAGAGTGGCCGG+CGG | 0.666844 | 2_3:-20888173 | None:intergenic |
| TGACAACATGAAGCCAGTAA+CGG | 0.669534 | 2_3:+20890123 | Msa0283590:CDS |
| AAGCCAGTAACGGTATCCGA+GGG | 0.679107 | 2_3:+20890133 | Msa0283590:CDS |
| GGTGAAGCTAGAGGTCACAC+TGG | 0.683965 | 2_3:+20892382 | Msa0283590:CDS |
| AAAGTATTCAGCAATAAGGG+CGG | 0.684692 | 2_3:+20890223 | Msa0283590:CDS |
| CATAAGCAGCTTAGTCACTG+CGG | 0.689323 | 2_3:+20891842 | Msa0283590:CDS |
| TTGTACTTGTTCAATACACG+GGG | 0.704021 | 2_3:-20892009 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATTTAATTAAACAAT+AGG | + | chr2_3:20888545-20888564 | Msa0283590:intron | 10.0% |
| !!! | TATATTTTAGTTTATTTTGA+TGG | + | chr2_3:20888736-20888755 | Msa0283590:intron | 10.0% |
| !! | ATTATAAAACAAACAAAAAT+AGG | - | chr2_3:20892587-20892606 | None:intergenic | 10.0% |
| !!! | TAGTTTAAATTTTGAATGAA+CGG | + | chr2_3:20888683-20888702 | Msa0283590:intron | 15.0% |
| !! | TAATAACTAGAAATTGATTA+TGG | - | chr2_3:20889796-20889815 | None:intergenic | 15.0% |
| !! | TTTAATAGAACAATTAGTAA+CGG | + | chr2_3:20890073-20890092 | Msa0283590:CDS | 15.0% |
| !! | ATAGCTTATATATTGTATTA+CGG | - | chr2_3:20891451-20891470 | None:intergenic | 15.0% |
| !! | AGTCAATTATATATAAAACA+AGG | - | chr2_3:20891513-20891532 | None:intergenic | 15.0% |
| !! | ACATATAAAAGAAGAAAAAA+CGG | - | chr2_3:20892076-20892095 | None:intergenic | 15.0% |
| !!! | TTTATTTTCAAAAGAACACA+TGG | - | chr2_3:20888366-20888385 | None:intergenic | 20.0% |
| !!! | ATTTTAGTTTATTTTGATGG+CGG | + | chr2_3:20888739-20888758 | Msa0283590:intron | 20.0% |
| !!! | TGATGTATTTGATTTATAAC+CGG | + | chr2_3:20889153-20889172 | Msa0283590:intron | 20.0% |
| !! | ATCTTGCTTATAATAATGAT+CGG | + | chr2_3:20889204-20889223 | Msa0283590:intron | 20.0% |
| !!! | TGGTTTATATTAGAACATTT+TGG | + | chr2_3:20889528-20889547 | Msa0283590:intron | 20.0% |
| !!! | TAAGCTATTTCTATAAAACA+CGG | - | chr2_3:20889719-20889738 | None:intergenic | 20.0% |
| !!! | TTCATGGTTTTTTCAATTTT+TGG | + | chr2_3:20889823-20889842 | Msa0283590:intron | 20.0% |
| !!! | TCATGGTTTTTTCAATTTTT+GGG | + | chr2_3:20889824-20889843 | Msa0283590:intron | 20.0% |
| !!! | TTTATTGTTTTCTCTGTTTT+CGG | + | chr2_3:20889993-20890012 | Msa0283590:intron | 20.0% |
| !!! | TTTTTACAATGGAAAAACTT+AGG | + | chr2_3:20891398-20891417 | Msa0283590:intron | 20.0% |
| !! | ATAATATTACTTGCAATTAC+TGG | - | chr2_3:20891663-20891682 | None:intergenic | 20.0% |
| !! | GTAATTGCAAGTAATATTAT+TGG | + | chr2_3:20891663-20891682 | Msa0283590:intron | 20.0% |
| !!! | AATATTGTTTTTCTTCTTGT+AGG | + | chr2_3:20891799-20891818 | Msa0283590:intron | 20.0% |
| !!! | ATATTGTTTTTCTTCTTGTA+GGG | + | chr2_3:20891800-20891819 | Msa0283590:intron | 20.0% |
| !! | CATATAAAAGAAGAAAAAAC+GGG | - | chr2_3:20892075-20892094 | None:intergenic | 20.0% |
| !! | ATAAACAAACGTATACAAAA+AGG | - | chr2_3:20892173-20892192 | None:intergenic | 20.0% |
| !! | TTGTTTATGTGAAAGATATA+AGG | + | chr2_3:20892185-20892204 | Msa0283590:intron | 20.0% |
| !! | TAAAAATAAACTGTTGTATG+AGG | - | chr2_3:20892487-20892506 | None:intergenic | 20.0% |
| !!! | TTATCCCTCAAATATTTTAA+GGG | - | chr2_3:20892798-20892817 | None:intergenic | 20.0% |
| ! | GTCATTACTTACAACAATTA+GGG | - | chr2_3:20888270-20888289 | None:intergenic | 25.0% |
| ! | TGTCATTACTTACAACAATT+AGG | - | chr2_3:20888271-20888290 | None:intergenic | 25.0% |
| ! | TAACAGGTTTAACAACAATT+AGG | - | chr2_3:20888479-20888498 | None:intergenic | 25.0% |
| ! | TAAAGATACACTTTGACATA+CGG | - | chr2_3:20888635-20888654 | None:intergenic | 25.0% |
| !! | AATTTTGAATGAACGGTTTT+TGG | + | chr2_3:20888690-20888709 | Msa0283590:intron | 25.0% |
| !!! | TTTTAGTTTATTTTGATGGC+GGG | + | chr2_3:20888740-20888759 | Msa0283590:intron | 25.0% |
| ! | ACTATTTACGAGTATACTTA+CGG | - | chr2_3:20889002-20889021 | None:intergenic | 25.0% |
| ! | CTTCAAATCAATTGAATAAC+CGG | - | chr2_3:20889175-20889194 | None:intergenic | 25.0% |
| ! | TTAGGAAAACTACTTATGAT+TGG | + | chr2_3:20889508-20889527 | Msa0283590:intron | 25.0% |
| !!! | TCAATTTCTAGTTATTACAC+AGG | + | chr2_3:20889799-20889818 | Msa0283590:intron | 25.0% |
| !! | TTATTGTTTTCTCTGTTTTC+GGG | + | chr2_3:20889994-20890013 | Msa0283590:intron | 25.0% |
| ! | TACTCGTTTATTGAAAATGT+TGG | + | chr2_3:20890024-20890043 | Msa0283590:exon | 25.0% |
| !! | TCTAAAGTATTCAGCAATAA+GGG | + | chr2_3:20890220-20890239 | Msa0283590:CDS | 25.0% |
| ! | ATATACATGTGCTTATCTTT+AGG | + | chr2_3:20890524-20890543 | Msa0283590:intron | 25.0% |
| !! | TTTCTAGTGTTGTCAAATAT+TGG | + | chr2_3:20890565-20890584 | Msa0283590:intron | 25.0% |
| ! | CTACCAAAAAACTAGAATAA+CGG | - | chr2_3:20890653-20890672 | None:intergenic | 25.0% |
| !!! | TCACCAAAAATACGTTTTTT+AGG | - | chr2_3:20890770-20890789 | None:intergenic | 25.0% |
| !! | TTGTCAAATTGATTCAATAG+CGG | + | chr2_3:20891181-20891200 | Msa0283590:intron | 25.0% |
| ! | CATACAAATAAAAAAGGGAA+TGG | - | chr2_3:20891483-20891502 | None:intergenic | 25.0% |
| !!! | TCCCTTTTTTATTTGTATGT+AGG | + | chr2_3:20891484-20891503 | Msa0283590:intron | 25.0% |
| ! | CCCTACATACAAATAAAAAA+GGG | - | chr2_3:20891488-20891507 | None:intergenic | 25.0% |
| !!! | CCCTTTTTTATTTGTATGTA+GGG | + | chr2_3:20891485-20891504 | Msa0283590:intron | 25.0% |
| ! | ACCCTACATACAAATAAAAA+AGG | - | chr2_3:20891489-20891508 | None:intergenic | 25.0% |
| ! | TTATTTAACTGTACTCAATG+CGG | + | chr2_3:20891732-20891751 | Msa0283590:intron | 25.0% |
| ! | AAGACCCTTAAAATATTTGA+GGG | + | chr2_3:20892791-20892810 | Msa0283590:intron | 25.0% |
| !! | GTTATCCCTCAAATATTTTA+AGG | - | chr2_3:20892799-20892818 | None:intergenic | 25.0% |
| ! | TGAAAGTATGGATTTCACAT+TGG | - | chr2_3:20888433-20888452 | None:intergenic | 30.0% |
| GTATGTCAAAGTGTATCTTT+AGG | + | chr2_3:20888634-20888653 | Msa0283590:intron | 30.0% | |
| TATTTGCTTGTAAAAGTGAC+CGG | - | chr2_3:20889101-20889120 | None:intergenic | 30.0% | |
| TTGCTTATAATAATGATCGG+AGG | + | chr2_3:20889207-20889226 | Msa0283590:intron | 30.0% | |
| TGCTTATAATAATGATCGGA+GGG | + | chr2_3:20889208-20889227 | Msa0283590:intron | 30.0% | |
| TCTATGCATGTTTGAATTGA+CGG | + | chr2_3:20889365-20889384 | Msa0283590:intron | 30.0% | |
| GACACTATTAGGAAAAAAAC+TGG | + | chr2_3:20889423-20889442 | Msa0283590:intron | 30.0% | |
| CTATTAGGAAAAAAACTGGT+TGG | + | chr2_3:20889427-20889446 | Msa0283590:intron | 30.0% | |
| AATAAGTTGCTTATCCAAAC+AGG | + | chr2_3:20889769-20889788 | Msa0283590:intron | 30.0% | |
| ATAAGTTGCTTATCCAAACA+GGG | + | chr2_3:20889770-20889789 | Msa0283590:intron | 30.0% | |
| TAGTTATTACACAGGTTTCA+TGG | + | chr2_3:20889807-20889826 | Msa0283590:intron | 30.0% | |
| AACAATTAGTAACGGTGATT+TGG | + | chr2_3:20890081-20890100 | Msa0283590:CDS | 30.0% | |
| ATTTGGCAATTGTTTATGCA+AGG | + | chr2_3:20890098-20890117 | Msa0283590:CDS | 30.0% | |
| ! | GTGTTTTCAAACATTCAGAT+TGG | + | chr2_3:20890179-20890198 | Msa0283590:CDS | 30.0% |
| TTCAAACATTCAGATTGGAT+AGG | + | chr2_3:20890184-20890203 | Msa0283590:CDS | 30.0% | |
| ATTGGATAGGAAAGTCATTT+GGG | + | chr2_3:20890197-20890216 | Msa0283590:CDS | 30.0% | |
| ! | GTCTAAAGTATTCAGCAATA+AGG | + | chr2_3:20890219-20890238 | Msa0283590:CDS | 30.0% |
| AAAACTAAAGTCCACAATTC+AGG | - | chr2_3:20890274-20890293 | None:intergenic | 30.0% | |
| !! | CAGCTTTGTTGTTATGTATT+TGG | + | chr2_3:20890330-20890349 | Msa0283590:CDS | 30.0% |
| TTTAACTACTTCACTTGCAA+GGG | + | chr2_3:20890402-20890421 | Msa0283590:CDS | 30.0% | |
| !!! | TAGTGTTGCAGTTTTTTTAG+CGG | - | chr2_3:20890619-20890638 | None:intergenic | 30.0% |
| !!! | TTGCCGTTATTCTAGTTTTT+TGG | + | chr2_3:20890647-20890666 | Msa0283590:intron | 30.0% |
| ! | AGCAGAAAAAAGAGACTTTT+AGG | + | chr2_3:20890689-20890708 | Msa0283590:intron | 30.0% |
| !!! | CCAAAAATACGTTTTTTAGG+CGG | - | chr2_3:20890767-20890786 | None:intergenic | 30.0% |
| !!! | AAACGTATTTTTGGTGAAAC+TGG | + | chr2_3:20890773-20890792 | Msa0283590:intron | 30.0% |
| !!! | AACGTATTTTTGGTGAAACT+GGG | + | chr2_3:20890774-20890793 | Msa0283590:intron | 30.0% |
| !! | ATCTTGCAATTCATTGATTC+AGG | - | chr2_3:20890842-20890861 | None:intergenic | 30.0% |
| AAAATCACGATCAAACTCAT+GGG | - | chr2_3:20890937-20890956 | None:intergenic | 30.0% | |
| ! | ATTTGATTTCCATGAGCATA+GGG | + | chr2_3:20891067-20891086 | Msa0283590:intron | 30.0% |
| TTGTAAAAATAAGCCACGTT+GGG | - | chr2_3:20891387-20891406 | None:intergenic | 30.0% | |
| ATTGTAAAAATAAGCCACGT+TGG | - | chr2_3:20891388-20891407 | None:intergenic | 30.0% | |
| !!! | AACGTGGCTTATTTTTACAA+TGG | + | chr2_3:20891387-20891406 | Msa0283590:intron | 30.0% |
| TATTGTATTACGGTGAATAC+AGG | - | chr2_3:20891441-20891460 | None:intergenic | 30.0% | |
| ACAAATAAAAAAGGGAATGG+AGG | - | chr2_3:20891480-20891499 | None:intergenic | 30.0% | |
| GACTTATTTCAACTGTTATG+CGG | + | chr2_3:20891529-20891548 | Msa0283590:intron | 30.0% | |
| TGAAATAGAAGATAGTAACG+CGG | - | chr2_3:20891569-20891588 | None:intergenic | 30.0% | |
| TTTCCGTAATATGCTATTGA+TGG | + | chr2_3:20891598-20891617 | Msa0283590:intron | 30.0% | |
| ! | GAAAGATATAAGGACTTTTG+AGG | + | chr2_3:20892195-20892214 | Msa0283590:intron | 30.0% |
| ATGGAAAGCTTAGAGATTAA+CGG | + | chr2_3:20892253-20892272 | Msa0283590:CDS | 30.0% | |
| AACAGAAGAAGAATTAGGAT+AGG | - | chr2_3:20892347-20892366 | None:intergenic | 30.0% | |
| TCCTAATTCTTCTTCTGTTA+TGG | + | chr2_3:20892348-20892367 | Msa0283590:CDS | 30.0% | |
| CTTAATTCACAACATTCATG+TGG | + | chr2_3:20892508-20892527 | Msa0283590:three_prime_UTR | 30.0% | |
| GGTAATTGTAATCTCCATAT+AGG | + | chr2_3:20892540-20892559 | Msa0283590:three_prime_UTR | 30.0% | |
| CCAAACATGAATTTCCTATA+TGG | - | chr2_3:20892557-20892576 | None:intergenic | 30.0% | |
| CCATATAGGAAATTCATGTT+TGG | + | chr2_3:20892554-20892573 | Msa0283590:three_prime_UTR | 30.0% | |
| AATTTCTTAGCATATCCCTT+GGG | - | chr2_3:20892637-20892656 | None:intergenic | 30.0% | |
| AAATTTCTTAGCATATCCCT+TGG | - | chr2_3:20892638-20892657 | None:intergenic | 30.0% | |
| CAAGACCCTTAAAATATTTG+AGG | + | chr2_3:20892790-20892809 | Msa0283590:intron | 30.0% | |
| AAATATTTGAGGGATAACCT+TGG | + | chr2_3:20892801-20892820 | Msa0283590:intron | 30.0% | |
| ATAGCTCTCAAAACTGAAGT+AGG | - | chr2_3:20888228-20888247 | None:intergenic | 35.0% | |
| CTTACAACAATTAGGGTTTG+TGG | - | chr2_3:20888263-20888282 | None:intergenic | 35.0% | |
| ACGTGAAGAAACTGAAAGTA+TGG | - | chr2_3:20888445-20888464 | None:intergenic | 35.0% | |
| ATTGAACCACAACAAAGCAA+AGG | - | chr2_3:20888518-20888537 | None:intergenic | 35.0% | |
| !!! | TCTTTTAGAATTGCAACCAG+CGG | - | chr2_3:20888801-20888820 | None:intergenic | 35.0% |
| TCTGTGCATGTTTGAATTGA+CGG | + | chr2_3:20888943-20888962 | Msa0283590:intron | 35.0% | |
| TAAACACTTGTGACACTGAT+TGG | + | chr2_3:20889479-20889498 | Msa0283590:intron | 35.0% | |
| ! | AAACACTTGTGACACTGATT+GGG | + | chr2_3:20889480-20889499 | Msa0283590:intron | 35.0% |
| !! | GTCATTTTCATGAGCTATCT+TGG | - | chr2_3:20889662-20889681 | None:intergenic | 35.0% |
| AAATTGATTATGGCCCTGTT+TGG | - | chr2_3:20889786-20889805 | None:intergenic | 35.0% | |
| ACTAACTGATAACCTTCAAG+AGG | + | chr2_3:20889867-20889886 | Msa0283590:intron | 35.0% | |
| !! | TGTTTCTAGAATCCTCTTGA+AGG | - | chr2_3:20889882-20889901 | None:intergenic | 35.0% |
| ! | TCGGTTTTACAGAATCGATT+CGG | + | chr2_3:20890157-20890176 | Msa0283590:CDS | 35.0% |
| GATTGGATAGGAAAGTCATT+TGG | + | chr2_3:20890196-20890215 | Msa0283590:CDS | 35.0% | |
| ! | AAAGTATTCAGCAATAAGGG+CGG | + | chr2_3:20890223-20890242 | Msa0283590:CDS | 35.0% |
| ATGTATTTGGAGATTGTTCC+TGG | + | chr2_3:20890343-20890362 | Msa0283590:CDS | 35.0% | |
| CTTTAACTACTTCACTTGCA+AGG | + | chr2_3:20890401-20890420 | Msa0283590:CDS | 35.0% | |
| AACGTATAAACATGTCCTGT+AGG | - | chr2_3:20890436-20890455 | None:intergenic | 35.0% | |
| ! | GATTTTCACGAACAAAGATC+TGG | + | chr2_3:20890457-20890476 | Msa0283590:CDS | 35.0% |
| !!! | ATACGTTTTTTAGGCGGTAA+TGG | - | chr2_3:20890761-20890780 | None:intergenic | 35.0% |
| ! | CCGCCTAAAAAACGTATTTT+TGG | + | chr2_3:20890764-20890783 | Msa0283590:intron | 35.0% |
| GTTATCTTCCTTGAAATTCC+AGG | - | chr2_3:20890820-20890839 | None:intergenic | 35.0% | |
| CAAAATCACGATCAAACTCA+TGG | - | chr2_3:20890938-20890957 | None:intergenic | 35.0% | |
| ATCCCTTCATAAATTGGCTA+TGG | + | chr2_3:20890979-20890998 | Msa0283590:intron | 35.0% | |
| ATAAACATGCCCTTCACAAA+TGG | - | chr2_3:20891045-20891064 | None:intergenic | 35.0% | |
| ! | CATTTGATTTCCATGAGCAT+AGG | + | chr2_3:20891066-20891085 | Msa0283590:intron | 35.0% |
| ACACATGTATCAAACATCAG+AGG | - | chr2_3:20891122-20891141 | None:intergenic | 35.0% | |
| CAATGGAAAAACTTAGGAGT+CGG | + | chr2_3:20891404-20891423 | Msa0283590:intron | 35.0% | |
| GAAATAGAAGATAGTAACGC+GGG | - | chr2_3:20891568-20891587 | None:intergenic | 35.0% | |
| CTATCTTCTATTTCACGTAG+CGG | + | chr2_3:20891574-20891593 | Msa0283590:intron | 35.0% | |
| GTGCCATCAATAGCATATTA+CGG | - | chr2_3:20891604-20891623 | None:intergenic | 35.0% | |
| ! | CGTTGACATTTTGAACAGTA+GGG | - | chr2_3:20891699-20891718 | None:intergenic | 35.0% |
| ACTTGAGATGTTCAGTGTAA+AGG | + | chr2_3:20891761-20891780 | Msa0283590:intron | 35.0% | |
| GCAAAAATGTTACGACATGA+CGG | + | chr2_3:20891969-20891988 | Msa0283590:CDS | 35.0% | |
| TTGTACTTGTTCAATACACG+GGG | - | chr2_3:20892012-20892031 | None:intergenic | 35.0% | |
| GTTGTACTTGTTCAATACAC+GGG | - | chr2_3:20892013-20892032 | None:intergenic | 35.0% | |
| CGTTGTACTTGTTCAATACA+CGG | - | chr2_3:20892014-20892033 | None:intergenic | 35.0% | |
| CGTAGTAGTTATGCAACTAA+TGG | + | chr2_3:20892120-20892139 | Msa0283590:intron | 35.0% | |
| TTAGAGATTAACGGTGATGA+CGG | + | chr2_3:20892262-20892281 | Msa0283590:CDS | 35.0% | |
| GCCATAACAGAAGAAGAATT+AGG | - | chr2_3:20892352-20892371 | None:intergenic | 35.0% | |
| ATTCACAACATTCATGTGGA+AGG | + | chr2_3:20892512-20892531 | Msa0283590:three_prime_UTR | 35.0% | |
| ATTTCTTAGCATATCCCTTG+GGG | - | chr2_3:20892636-20892655 | None:intergenic | 35.0% | |
| !! | ATTCCTTAATTTGTGCCCTA+AGG | + | chr2_3:20892756-20892775 | Msa0283590:intron | 35.0% |
| !! | TTCCTTAATTTGTGCCCTAA+GGG | + | chr2_3:20892757-20892776 | Msa0283590:intron | 35.0% |
| ACATGACAGGTTTCTCACAT+TGG | - | chr2_3:20888405-20888424 | None:intergenic | 40.0% | |
| CAAAGACGCATGAACATAAC+AGG | - | chr2_3:20888495-20888514 | None:intergenic | 40.0% | |
| ! | TCTTTGCCTTTGCTTTGTTG+TGG | + | chr2_3:20888509-20888528 | Msa0283590:intron | 40.0% |
| !!! | TTATTTTGATGGCGGGATGA+CGG | + | chr2_3:20888747-20888766 | Msa0283590:intron | 40.0% |
| GAGCCAGACAAAAAAGTTTG+GGG | - | chr2_3:20888776-20888795 | None:intergenic | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | - | chr2_3:20888777-20888796 | None:intergenic | 40.0% | |
| TGCATGTTTGAATTGACGGT+GGG | + | chr2_3:20888947-20888966 | Msa0283590:intron | 40.0% | |
| ATCAACAAGCGATATAGGAG+GGG | - | chr2_3:20889340-20889359 | None:intergenic | 40.0% | |
| CATCAACAAGCGATATAGGA+GGG | - | chr2_3:20889341-20889360 | None:intergenic | 40.0% | |
| ATCGCATCAACAAGCGATAT+AGG | - | chr2_3:20889345-20889364 | None:intergenic | 40.0% | |
| ATGCATGTTTGAATTGACGG+TGG | + | chr2_3:20889368-20889387 | Msa0283590:intron | 40.0% | |
| TGCATGTTTGAATTGACGGT+GGG | + | chr2_3:20888947-20888966 | Msa0283590:intron | 40.0% | |
| ACAGAATCACAGTGCAAGAT+GGG | + | chr2_3:20889396-20889415 | Msa0283590:intron | 40.0% | |
| ! | GACACTGATTGGGAAAACTT+AGG | + | chr2_3:20889490-20889509 | Msa0283590:intron | 40.0% |
| TCTGATCCATGTAGTATAGC+CGG | + | chr2_3:20889556-20889575 | Msa0283590:intron | 40.0% | |
| CTCCACTTTGTGAGATAAGA+CGG | + | chr2_3:20889579-20889598 | Msa0283590:intron | 40.0% | |
| AACCGTCTTATCTCACAAAG+TGG | - | chr2_3:20889584-20889603 | None:intergenic | 40.0% | |
| GAGCTATCTTGGAGAGTTTA+TGG | - | chr2_3:20889651-20889670 | None:intergenic | 40.0% | |
| TGACAACATGAAGCCAGTAA+CGG | + | chr2_3:20890123-20890142 | Msa0283590:CDS | 40.0% | |
| ATTCTGTAAAACCGATCCCT+CGG | - | chr2_3:20890152-20890171 | None:intergenic | 40.0% | |
| AAAGTCCACAATTCAGGAGT+AGG | - | chr2_3:20890268-20890287 | None:intergenic | 40.0% | |
| !!! | GGACTTTAGTTTTAAGCCAC+AGG | + | chr2_3:20890281-20890300 | Msa0283590:CDS | 40.0% |
| CATATAGAATCTGTGTCCTG+TGG | - | chr2_3:20890300-20890319 | None:intergenic | 40.0% | |
| ! | TTGAATCTGGTACTGGAAGT+GGG | + | chr2_3:20890377-20890396 | Msa0283590:CDS | 40.0% |
| AACAAAGATCTGGATCAGCT+AGG | + | chr2_3:20890467-20890486 | Msa0283590:CDS | 40.0% | |
| ATATTGGCGCTATAGCATAG+CGG | + | chr2_3:20890581-20890600 | Msa0283590:intron | 40.0% | |
| TTAGGCAGTGTTGTCAATTG+TGG | + | chr2_3:20890707-20890726 | Msa0283590:intron | 40.0% | |
| ! | ATCAGAATTTGGTGGGTGTA+CGG | - | chr2_3:20890869-20890888 | None:intergenic | 40.0% |
| GTATGGTCGGAATCAGAATT+TGG | - | chr2_3:20890880-20890899 | None:intergenic | 40.0% | |
| !!! | GATCGTGATTTTGACTTCCT+TGG | + | chr2_3:20890945-20890964 | Msa0283590:intron | 40.0% |
| CGCCATAGCCAATTTATGAA+GGG | - | chr2_3:20890984-20891003 | None:intergenic | 40.0% | |
| CCTTCATAAATTGGCTATGG+CGG | + | chr2_3:20890982-20891001 | Msa0283590:intron | 40.0% | |
| CTTCATAAATTGGCTATGGC+GGG | + | chr2_3:20890983-20891002 | Msa0283590:intron | 40.0% | |
| ATCAAACATCAGAGGAAGTC+TGG | - | chr2_3:20891114-20891133 | None:intergenic | 40.0% | |
| ACTATTGTGCTATCACATGG+TGG | + | chr2_3:20891205-20891224 | Msa0283590:intron | 40.0% | |
| ! | TGCTATTGATGGCACTTTCA+TGG | + | chr2_3:20891609-20891628 | Msa0283590:intron | 40.0% |
| !! | GCGTTGACATTTTGAACAGT+AGG | - | chr2_3:20891700-20891719 | None:intergenic | 40.0% |
| ! | AGGGATGACTTTGAGAAGAT+TGG | + | chr2_3:20891819-20891838 | Msa0283590:intron | 40.0% |
| !!! | CTTGGCTGATGCAGTTTTTT+TGG | + | chr2_3:20891911-20891930 | Msa0283590:CDS | 40.0% |
| ! | TTTTGGATCTACCTCAACCT+TGG | + | chr2_3:20891928-20891947 | Msa0283590:CDS | 40.0% |
| ! | CGTAACATTTTTGCAGCTGA+AGG | - | chr2_3:20891963-20891982 | None:intergenic | 40.0% |
| ACAATGCAATCCAACTTCAC+CGG | + | chr2_3:20892044-20892063 | Msa0283590:CDS | 40.0% | |
| ! | GAAGAAAAAACGGGAAGTAC+CGG | - | chr2_3:20892066-20892085 | None:intergenic | 40.0% |
| ACATTCATGTGGAAGGTTTC+TGG | + | chr2_3:20892519-20892538 | Msa0283590:three_prime_UTR | 40.0% | |
| AAATGATAACATGTGCCCCA+AGG | + | chr2_3:20892618-20892637 | Msa0283590:intron | 40.0% | |
| AATGATAACATGTGCCCCAA+GGG | + | chr2_3:20892619-20892638 | Msa0283590:intron | 40.0% | |
| ! | CTTGTTATCTTGTGCCCTTA+GGG | - | chr2_3:20892774-20892793 | None:intergenic | 40.0% |
| ! | TCTTGTTATCTTGTGCCCTT+AGG | - | chr2_3:20892775-20892794 | None:intergenic | 40.0% |
| TTAGGGTTTGTGGAGAGAGA+TGG | - | chr2_3:20888253-20888272 | None:intergenic | 45.0% | |
| CACATTGGCATGAACATGAC+AGG | - | chr2_3:20888418-20888437 | None:intergenic | 45.0% | |
| CCAGACAAAAAAGTTTGGGG+TGG | - | chr2_3:20888773-20888792 | None:intergenic | 45.0% | |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | + | chr2_3:20888770-20888789 | Msa0283590:intron | 45.0% |
| CGGAGCCAGACAAAAAAGTT+TGG | - | chr2_3:20888778-20888797 | None:intergenic | 45.0% | |
| ! | TTTAGAATTGCAACCAGCGG+CGG | - | chr2_3:20888798-20888817 | None:intergenic | 45.0% |
| TCGACGAGCGATATAGAAGA+GGG | - | chr2_3:20888917-20888936 | None:intergenic | 45.0% | |
| ATCGACGAGCGATATAGAAG+AGG | - | chr2_3:20888918-20888937 | None:intergenic | 45.0% | |
| GTGCATGTTTGAATTGACGG+TGG | + | chr2_3:20888946-20888965 | Msa0283590:intron | 45.0% | |
| CTCCTTTAGTATACTCGCTC+CGG | + | chr2_3:20889079-20889098 | Msa0283590:intron | 45.0% | |
| TCAACAAGCGATATAGGAGG+GGG | - | chr2_3:20889339-20889358 | None:intergenic | 45.0% | |
| GCATCAACAAGCGATATAGG+AGG | - | chr2_3:20889342-20889361 | None:intergenic | 45.0% | |
| GACAGAATCACAGTGCAAGA+TGG | + | chr2_3:20889395-20889414 | Msa0283590:intron | 45.0% | |
| CTTATCTCACAAAGTGGAGC+CGG | - | chr2_3:20889578-20889597 | None:intergenic | 45.0% | |
| !!! | TTTCTCTGTTTTCGGGTTGC+AGG | + | chr2_3:20890001-20890020 | Msa0283590:intron | 45.0% |
| TAGCACCTACTCCTGAATTG+TGG | + | chr2_3:20890260-20890279 | Msa0283590:CDS | 45.0% | |
| GATTCAAGAACGACACAACC+AGG | - | chr2_3:20890364-20890383 | None:intergenic | 45.0% | |
| ! | GGTTGTGTCGTTCTTGAATC+TGG | + | chr2_3:20890364-20890383 | Msa0283590:CDS | 45.0% |
| GTCGTTCTTGAATCTGGTAC+TGG | + | chr2_3:20890370-20890389 | Msa0283590:CDS | 45.0% | |
| ! | CTTGAATCTGGTACTGGAAG+TGG | + | chr2_3:20890376-20890395 | Msa0283590:CDS | 45.0% |
| GCAGTGTTGTCAATTGTGGA+AGG | + | chr2_3:20890711-20890730 | Msa0283590:intron | 45.0% | |
| !! | TTTTTGGTGAAACTGGGTCC+TGG | + | chr2_3:20890780-20890799 | Msa0283590:intron | 45.0% |
| TCCTTGAAATTCCAGGTTCG+CGG | - | chr2_3:20890813-20890832 | None:intergenic | 45.0% | |
| GGTCGGAATCAGAATTTGGT+GGG | - | chr2_3:20890876-20890895 | None:intergenic | 45.0% | |
| TGGTCGGAATCAGAATTTGG+TGG | - | chr2_3:20890877-20890896 | None:intergenic | 45.0% | |
| ! | CGTATGATTTTGCTACCCCT+TGG | - | chr2_3:20890912-20890931 | None:intergenic | 45.0% |
| !!! | GATTTTGACTTCCTTGGCCA+TGG | + | chr2_3:20890951-20890970 | Msa0283590:intron | 45.0% |
| CCGCCATAGCCAATTTATGA+AGG | - | chr2_3:20890985-20891004 | None:intergenic | 45.0% | |
| AACATGCCCTTCACAAATGG+TGG | - | chr2_3:20891042-20891061 | None:intergenic | 45.0% | |
| GGCACTATTGTGCTATCACA+TGG | + | chr2_3:20891202-20891221 | Msa0283590:intron | 45.0% | |
| ATGATCCCCTATGAAAACCG+TGG | + | chr2_3:20891234-20891253 | Msa0283590:intron | 45.0% | |
| ! | ATAGCGCCACGGTTTTCATA+GGG | - | chr2_3:20891243-20891262 | None:intergenic | 45.0% |
| CTATCCCAGTTTCGCTATCA+GGG | + | chr2_3:20891259-20891278 | Msa0283590:intron | 45.0% | |
| ! | ATTGCCCTGATAGCGAAACT+GGG | - | chr2_3:20891266-20891285 | None:intergenic | 45.0% |
| ! | TATTGCCCTGATAGCGAAAC+TGG | - | chr2_3:20891267-20891286 | None:intergenic | 45.0% |
| TTTCGCTATCAGGGCAATAG+CGG | + | chr2_3:20891268-20891287 | Msa0283590:intron | 45.0% | |
| CATAAGCAGCTTAGTCACTG+CGG | + | chr2_3:20891842-20891861 | Msa0283590:CDS | 45.0% | |
| ATAAGCAGCTTAGTCACTGC+GGG | + | chr2_3:20891843-20891862 | Msa0283590:CDS | 45.0% | |
| GGGTTTCCTGAAGAATTTGC+TGG | + | chr2_3:20891888-20891907 | Msa0283590:CDS | 45.0% | |
| !! | TCCTGAAGAATTTGCTGGCT+TGG | + | chr2_3:20891893-20891912 | Msa0283590:CDS | 45.0% |
| !!! | GGACTTTTGAGGTACTCCTA+CGG | + | chr2_3:20892206-20892225 | Msa0283590:CDS | 45.0% |
| GGACATACGAAGTTCGAGAA+GGG | + | chr2_3:20892227-20892246 | Msa0283590:CDS | 45.0% | |
| CGAAGTTCGAGAAGGGAAAA+TGG | + | chr2_3:20892234-20892253 | Msa0283590:CDS | 45.0% | |
| ATGGTTCTCTTCCTTGCAAG+AGG | + | chr2_3:20892290-20892309 | Msa0283590:CDS | 45.0% | |
| TCTGTTATGGCTAGACCATG+TGG | + | chr2_3:20892361-20892380 | Msa0283590:CDS | 45.0% | |
| TGCCCTTAGGGCACAAATTA+AGG | - | chr2_3:20892762-20892781 | None:intergenic | 45.0% | |
| !!! | TTTGTTTTATAATTAAAATA+TGG | + | chr2_3:20892594-20892613 | Msa0283590:intron | 5.0% |
| GATATAGAAGAGGGGGGGAA+GGG | - | chr2_3:20888908-20888927 | None:intergenic | 50.0% | |
| ACGAGCGATATAGAAGAGGG+GGG | - | chr2_3:20888914-20888933 | None:intergenic | 50.0% | |
| GACGAGCGATATAGAAGAGG+GGG | - | chr2_3:20888915-20888934 | None:intergenic | 50.0% | |
| CGACGAGCGATATAGAAGAG+GGG | - | chr2_3:20888916-20888935 | None:intergenic | 50.0% | |
| GACCGGAGCGAGTATACTAA+AGG | - | chr2_3:20889084-20889103 | None:intergenic | 50.0% | |
| CAACAAGCGATATAGGAGGG+GGG | - | chr2_3:20889338-20889357 | None:intergenic | 50.0% | |
| AGATGGGTCGCGACACTATT+AGG | + | chr2_3:20889412-20889431 | Msa0283590:intron | 50.0% | |
| AAGCCAGTAACGGTATCCGA+GGG | + | chr2_3:20890133-20890152 | Msa0283590:CDS | 50.0% | |
| AGTAACGGTATCCGAGGGAT+CGG | + | chr2_3:20890138-20890157 | Msa0283590:CDS | 50.0% | |
| AAATTCCAGGTTCGCGGGTT+GGG | - | chr2_3:20890807-20890826 | None:intergenic | 50.0% | |
| CCTTGAAATTCCAGGTTCGC+GGG | - | chr2_3:20890812-20890831 | None:intergenic | 50.0% | |
| ! | AGAATTTGGTGGGTGTACGG+CGG | - | chr2_3:20890866-20890885 | None:intergenic | 50.0% |
| TTGGCATGCTGGAGTATGGT+CGG | - | chr2_3:20890893-20890912 | None:intergenic | 50.0% | |
| ACCATACTCCAGCATGCCAA+GGG | + | chr2_3:20890893-20890912 | Msa0283590:intron | 50.0% | |
| ! | TTTGACTTCCTTGGCCATGG+CGG | + | chr2_3:20890954-20890973 | Msa0283590:intron | 50.0% |
| GCGGGCATCCCTTCATAAAT+TGG | + | chr2_3:20890973-20890992 | Msa0283590:intron | 50.0% | |
| GATTTCCATGAGCATAGGGC+TGG | + | chr2_3:20891071-20891090 | Msa0283590:intron | 50.0% | |
| ! | TAGCGCCACGGTTTTCATAG+GGG | - | chr2_3:20891242-20891261 | None:intergenic | 50.0% |
| ! | GATAGCGCCACGGTTTTCAT+AGG | - | chr2_3:20891244-20891263 | None:intergenic | 50.0% |
| GCTATCCCAGTTTCGCTATC+AGG | + | chr2_3:20891258-20891277 | Msa0283590:intron | 50.0% | |
| AGTGAGGGACATTCAAGGTG+AGG | + | chr2_3:20891866-20891885 | Msa0283590:CDS | 50.0% | |
| GTGAGGGACATTCAAGGTGA+GGG | + | chr2_3:20891867-20891886 | Msa0283590:CDS | 50.0% | |
| TGAGGGACATTCAAGGTGAG+GGG | + | chr2_3:20891868-20891887 | Msa0283590:CDS | 50.0% | |
| GCCAAGCCAGCAAATTCTTC+AGG | - | chr2_3:20891897-20891916 | None:intergenic | 50.0% | |
| GGAATAGCTAGCCAAGGTTG+AGG | - | chr2_3:20891942-20891961 | None:intergenic | 50.0% | |
| GCTGAAGGAATAGCTAGCCA+AGG | - | chr2_3:20891948-20891967 | None:intergenic | 50.0% | |
| CTCGAACTTCGTATGTCCGT+AGG | - | chr2_3:20892225-20892244 | None:intergenic | 50.0% | |
| CGGACATACGAAGTTCGAGA+AGG | + | chr2_3:20892226-20892245 | Msa0283590:CDS | 50.0% | |
| !! | AACGGTGATGACGGCTCTAA+TGG | + | chr2_3:20892271-20892290 | Msa0283590:CDS | 50.0% |
| GTTCTCTTCCTTGCAAGAGG+AGG | + | chr2_3:20892293-20892312 | Msa0283590:CDS | 50.0% | |
| TTGCAAGAGGAGGCAACGTT+CGG | + | chr2_3:20892303-20892322 | Msa0283590:CDS | 50.0% | |
| AGACCATGTGGTGAAGCTAG+AGG | + | chr2_3:20892373-20892392 | Msa0283590:CDS | 50.0% | |
| ! | TGACCTCTAGCTTCACCACA+TGG | - | chr2_3:20892379-20892398 | None:intergenic | 50.0% |
| TGGATGGAGAAGGAGGAGAG+TGG | - | chr2_3:20888183-20888202 | None:intergenic | 55.0% | |
| CACTGGATGGATGGAGAAGG+AGG | - | chr2_3:20888190-20888209 | None:intergenic | 55.0% | |
| CTCCTTCTCCATCCATCCAG+TGG | + | chr2_3:20888188-20888207 | Msa0283590:five_prime_UTR | 55.0% | |
| CTTCTCCATCCATCCAGTGG+CGG | + | chr2_3:20888191-20888210 | Msa0283590:five_prime_UTR | 55.0% | |
| GTAATCCGCCACTGGATGGA+TGG | - | chr2_3:20888199-20888218 | None:intergenic | 55.0% | |
| GAGAGTAATCCGCCACTGGA+TGG | - | chr2_3:20888203-20888222 | None:intergenic | 55.0% | |
| GGATGAGAGTAATCCGCCAC+TGG | - | chr2_3:20888207-20888226 | None:intergenic | 55.0% | |
| CGATATAGAAGAGGGGGGGA+AGG | - | chr2_3:20888909-20888928 | None:intergenic | 55.0% | |
| CGAGCGATATAGAAGAGGGG+GGG | - | chr2_3:20888913-20888932 | None:intergenic | 55.0% | |
| AGCGATATAGGAGGGGGGAA+GGG | - | chr2_3:20889333-20889352 | None:intergenic | 55.0% | |
| AAGCGATATAGGAGGGGGGA+AGG | - | chr2_3:20889334-20889353 | None:intergenic | 55.0% | |
| GTGGAGCCGGCTATACTACA+TGG | - | chr2_3:20889565-20889584 | None:intergenic | 55.0% | |
| GAAGCCAGTAACGGTATCCG+AGG | + | chr2_3:20890132-20890151 | Msa0283590:CDS | 55.0% | |
| GATCCCTCGGATACCGTTAC+TGG | - | chr2_3:20890139-20890158 | None:intergenic | 55.0% | |
| GAAATTCCAGGTTCGCGGGT+TGG | - | chr2_3:20890808-20890827 | None:intergenic | 55.0% | |
| CCCGCGAACCTGGAATTTCA+AGG | + | chr2_3:20890809-20890828 | Msa0283590:intron | 55.0% | |
| GACCATACTCCAGCATGCCA+AGG | + | chr2_3:20890892-20890911 | Msa0283590:intron | 55.0% | |
| CCATACTCCAGCATGCCAAG+GGG | + | chr2_3:20890894-20890913 | Msa0283590:intron | 55.0% | |
| TTTGCTACCCCTTGGCATGC+TGG | - | chr2_3:20890904-20890923 | None:intergenic | 55.0% | |
| TTGACTTCCTTGGCCATGGC+GGG | + | chr2_3:20890955-20890974 | Msa0283590:intron | 55.0% | |
| TTATGAAGGGATGCCCGCCA+TGG | - | chr2_3:20890971-20890990 | None:intergenic | 55.0% | |
| TCTGCCTCACAATTCCACCG+TGG | + | chr2_3:20891016-20891035 | Msa0283590:intron | 55.0% | |
| TTCACAAATGGTGGCCACGG+TGG | - | chr2_3:20891033-20891052 | None:intergenic | 55.0% | |
| ACCGTGGCCACCATTTGTGA+AGG | + | chr2_3:20891032-20891051 | Msa0283590:intron | 55.0% | |
| CCCTTCACAAATGGTGGCCA+CGG | - | chr2_3:20891036-20891055 | None:intergenic | 55.0% | |
| CCGTGGCCACCATTTGTGAA+GGG | + | chr2_3:20891033-20891052 | Msa0283590:intron | 55.0% | |
| CTCATCCAGCCCTATGCTCA+TGG | - | chr2_3:20891079-20891098 | None:intergenic | 55.0% | |
| ATCTGCATGTGTGCCCAACG+TGG | + | chr2_3:20891371-20891390 | Msa0283590:intron | 55.0% | |
| CTTAGTCACTGCGGGAGTGA+GGG | + | chr2_3:20891851-20891870 | Msa0283590:CDS | 55.0% | |
| !! | ACGGGAAGTACCGGTGAAGT+TGG | - | chr2_3:20892057-20892076 | None:intergenic | 55.0% |
| GAACGTTGCCTCCTCTTGCA+AGG | - | chr2_3:20892304-20892323 | None:intergenic | 55.0% | |
| AAGAGGAGGCAACGTTCGGA+TGG | + | chr2_3:20892307-20892326 | Msa0283590:CDS | 55.0% | |
| ACGTTCGGATGGAGCTAGTG+TGG | + | chr2_3:20892318-20892337 | Msa0283590:CDS | 55.0% | |
| GGTGAAGCTAGAGGTCACAC+TGG | + | chr2_3:20892382-20892401 | Msa0283590:CDS | 55.0% | |
| ! | GTGTGGTGTGGTGGAGCGAT+TGG | - | chr2_3:20888148-20888167 | None:intergenic | 60.0% |
| TGGAGAAGGAGGAGAGTGGC+CGG | - | chr2_3:20888179-20888198 | None:intergenic | 60.0% | |
| CGCCACTGGATGGATGGAGA+AGG | - | chr2_3:20888193-20888212 | None:intergenic | 60.0% | |
| !! | TTTTTGTCTGGCTCCGCCGC+TGG | + | chr2_3:20888782-20888801 | Msa0283590:intron | 60.0% |
| GCAAGGGCAGTTGCTCCTAC+AGG | + | chr2_3:20890418-20890437 | Msa0283590:CDS | 60.0% | |
| CCCCTTGGCATGCTGGAGTA+TGG | - | chr2_3:20890897-20890916 | None:intergenic | 60.0% | |
| GTGGCCACGGTGGAATTGTG+AGG | - | chr2_3:20891023-20891042 | None:intergenic | 60.0% | |
| GCGAAACTGGGATAGCGCCA+CGG | - | chr2_3:20891254-20891273 | None:intergenic | 60.0% | |
| GCTTAGTCACTGCGGGAGTG+AGG | + | chr2_3:20891850-20891869 | Msa0283590:CDS | 60.0% | |
| GCGGGAGTGAGGGACATTCA+AGG | + | chr2_3:20891861-20891880 | Msa0283590:CDS | 60.0% | |
| AGAAGGAGGAGAGTGGCCGG+CGG | - | chr2_3:20888176-20888195 | None:intergenic | 65.0% | |
| !! | CAGGTTCGCGGGTTGGGTCC+AGG | - | chr2_3:20890801-20890820 | None:intergenic | 70.0% |
| CTGGACCCAACCCGCGAACC+TGG | + | chr2_3:20890799-20890818 | Msa0283590:intron | 70.0% | |
| AGGGATGCCCGCCATGGCCA+AGG | - | chr2_3:20890965-20890984 | None:intergenic | 70.0% | |
| GCGGCGGTGGTGTGGTGTGG+TGG | - | chr2_3:20888157-20888176 | None:intergenic | 75.0% | |
| CCACACCACACCACCGCCGC+CGG | + | chr2_3:20888157-20888176 | Msa0283590:five_prime_UTR | 75.0% | |
| AGGAGGAGAGTGGCCGGCGG+CGG | - | chr2_3:20888173-20888192 | None:intergenic | 75.0% | |
| ! | CCGGCGGCGGTGGTGTGGTG+TGG | - | chr2_3:20888160-20888179 | None:intergenic | 80.0% |
| ! | AGTGGCCGGCGGCGGTGGTG+TGG | - | chr2_3:20888165-20888184 | None:intergenic | 80.0% |
| ! | AGGAGAGTGGCCGGCGGCGG+TGG | - | chr2_3:20888170-20888189 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 20888093 | 20892828 | 20888093 | ID=Msa0283590;Name=Msa0283590 |
| chr2_3 | mRNA | 20888093 | 20892828 | 20888093 | ID=Msa0283590-mRNA-1;Parent=Msa0283590;Name=Msa0283590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=202|1|1|1|0.5|0.4|5|204|308 |
| chr2_3 | exon | 20888093 | 20888277 | 20888093 | ID=Msa0283590-mRNA-1:exon:8271;Parent=Msa0283590-mRNA-1 |
| chr2_3 | exon | 20890023 | 20890488 | 20890023 | ID=Msa0283590-mRNA-1:exon:8272;Parent=Msa0283590-mRNA-1 |
| chr2_3 | exon | 20891821 | 20892065 | 20891821 | ID=Msa0283590-mRNA-1:exon:8273;Parent=Msa0283590-mRNA-1 |
| chr2_3 | exon | 20892200 | 20892610 | 20892200 | ID=Msa0283590-mRNA-1:exon:8274;Parent=Msa0283590-mRNA-1 |
| chr2_3 | exon | 20892803 | 20892828 | 20892803 | ID=Msa0283590-mRNA-1:exon:8275;Parent=Msa0283590-mRNA-1 |
| chr2_3 | five_prime_UTR | 20888093 | 20888277 | 20888093 | ID=Msa0283590-mRNA-1:five_prime_utr;Parent=Msa0283590-mRNA-1 |
| chr2_3 | five_prime_UTR | 20890023 | 20890039 | 20890023 | ID=Msa0283590-mRNA-1:five_prime_utr;Parent=Msa0283590-mRNA-1 |
| chr2_3 | CDS | 20890040 | 20890488 | 20890040 | ID=Msa0283590-mRNA-1:cds;Parent=Msa0283590-mRNA-1 |
| chr2_3 | CDS | 20891821 | 20892065 | 20891821 | ID=Msa0283590-mRNA-1:cds;Parent=Msa0283590-mRNA-1 |
| chr2_3 | CDS | 20892200 | 20892432 | 20892200 | ID=Msa0283590-mRNA-1:cds;Parent=Msa0283590-mRNA-1 |
| chr2_3 | three_prime_UTR | 20892433 | 20892610 | 20892433 | ID=Msa0283590-mRNA-1:three_prime_utr;Parent=Msa0283590-mRNA-1 |
| chr2_3 | three_prime_UTR | 20892803 | 20892828 | 20892803 | ID=Msa0283590-mRNA-1:three_prime_utr;Parent=Msa0283590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
