AlfalfaGEDB | Msa0283590

M. sativa cultivar zhongmu-4 / Msa0283590

KEGG: K07442
GO: GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0031515 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061953 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234
PFAM: PF08704.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283590	XP_013452184.2	98.058	309	5	1	1	308	1	309	0.0	625

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283590	sp\|Q6AY46\|TRM61_RAT	44.518	301	143	6	10	305	4	285	1.61e-79	246

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283590	A0A072UAU6	98.058	309	5	1	1	308	1	309	0.0	625

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007850	Msa0283590	0.808187	3.502815e-50	-8.615850e-47
Msa0035130	Msa0283590	0.812083	5.068246e-51	-8.615850e-47
Msa0262480	Msa0283590	0.813204	2.881672e-51	-8.615850e-47
Msa0283590	Msa0654870	0.807483	4.944137e-50	-8.615850e-47
Msa0283590	Msa0666230	0.813354	2.671359e-51	-8.615850e-47
Msa0283590	Msa0751010	0.801930	7.135790e-49	-8.615850e-47
Msa0283590	Msa0794050	0.818699	1.710699e-52	-8.615850e-47
Msa0283590	Msa0818770	0.826152	3.173018e-54	-8.615850e-47
Msa0283590	Msa0928120	0.820891	5.396348e-53	-8.615850e-47
Msa0283590	Msa0960830	0.803016	4.262806e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283590	MtrunA17_Chr6g0468581	98.058	309	5	1	1	308	1	309	0.0	625
Msa0283590	MtrunA17_Chr2g0282851	77.056	231	53	0	1	231	52	282	3.85e-136	387

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0283590	AT5G14600.1	73.651	315	76	2	1	308	1	315	3.01e-175	487

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Find 104 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAAGTCCACAATTC+AGG	0.328439	2_3:-20890271	None:intergenic
AAAGTATTCAGCAATAAGGG+CGG	0.684692	2_3:+20890223	Msa0283590:CDS
AAAGTCCACAATTCAGGAGT+AGG	0.594923	2_3:-20890265	None:intergenic
AAATATTTGAGGGATAACCT+TGG	0.550886	2_3:+20892801	Msa0283590:intron
AACAAAGATCTGGATCAGCT+AGG	0.636973	2_3:+20890467	Msa0283590:CDS
AACAATTAGTAACGGTGATT+TGG	0.271982	2_3:+20890081	Msa0283590:CDS
AACAGAAGAAGAATTAGGAT+AGG	0.630818	2_3:-20892344	None:intergenic
AACGGTGATGACGGCTCTAA+TGG	0.392261	2_3:+20892271	Msa0283590:CDS
AACGTATAAACATGTCCTGT+AGG	0.611682	2_3:-20890433	None:intergenic
AAGACCCTTAAAATATTTGA+GGG	0.458557	2_3:+20892791	Msa0283590:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATGTCAAAGTGTATCTTT+AGG	+	chr2_3:20888634-20888653	Msa0283590:intron	30.0%
TATTTGCTTGTAAAAGTGAC+CGG	-	chr2_3:20889101-20889120	None:intergenic	30.0%
TTGCTTATAATAATGATCGG+AGG	+	chr2_3:20889207-20889226	Msa0283590:intron	30.0%
TGCTTATAATAATGATCGGA+GGG	+	chr2_3:20889208-20889227	Msa0283590:intron	30.0%
TCTATGCATGTTTGAATTGA+CGG	+	chr2_3:20889365-20889384	Msa0283590:intron	30.0%
GACACTATTAGGAAAAAAAC+TGG	+	chr2_3:20889423-20889442	Msa0283590:intron	30.0%
CTATTAGGAAAAAAACTGGT+TGG	+	chr2_3:20889427-20889446	Msa0283590:intron	30.0%
AATAAGTTGCTTATCCAAAC+AGG	+	chr2_3:20889769-20889788	Msa0283590:intron	30.0%
ATAAGTTGCTTATCCAAACA+GGG	+	chr2_3:20889770-20889789	Msa0283590:intron	30.0%
TAGTTATTACACAGGTTTCA+TGG	+	chr2_3:20889807-20889826	Msa0283590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	20888093	20892828	20888093	ID=Msa0283590;Name=Msa0283590
chr2_3	mRNA	20888093	20892828	20888093	ID=Msa0283590-mRNA-1;Parent=Msa0283590;Name=Msa0283590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=202\|1\|1\|1\|0.5\|0.4\|5\|204\|308
chr2_3	exon	20888093	20888277	20888093	ID=Msa0283590-mRNA-1:exon:8271;Parent=Msa0283590-mRNA-1
chr2_3	exon	20890023	20890488	20890023	ID=Msa0283590-mRNA-1:exon:8272;Parent=Msa0283590-mRNA-1
chr2_3	exon	20891821	20892065	20891821	ID=Msa0283590-mRNA-1:exon:8273;Parent=Msa0283590-mRNA-1
chr2_3	exon	20892200	20892610	20892200	ID=Msa0283590-mRNA-1:exon:8274;Parent=Msa0283590-mRNA-1
chr2_3	exon	20892803	20892828	20892803	ID=Msa0283590-mRNA-1:exon:8275;Parent=Msa0283590-mRNA-1
chr2_3	five_prime_UTR	20888093	20888277	20888093	ID=Msa0283590-mRNA-1:five_prime_utr;Parent=Msa0283590-mRNA-1
chr2_3	five_prime_UTR	20890023	20890039	20890023	ID=Msa0283590-mRNA-1:five_prime_utr;Parent=Msa0283590-mRNA-1
chr2_3	CDS	20890040	20890488	20890040	ID=Msa0283590-mRNA-1:cds;Parent=Msa0283590-mRNA-1
chr2_3	CDS	20891821	20892065	20891821	ID=Msa0283590-mRNA-1:cds;Parent=Msa0283590-mRNA-1
chr2_3	CDS	20892200	20892432	20892200	ID=Msa0283590-mRNA-1:cds;Parent=Msa0283590-mRNA-1
chr2_3	three_prime_UTR	20892433	20892610	20892433	ID=Msa0283590-mRNA-1:three_prime_utr;Parent=Msa0283590-mRNA-1
chr2_3	three_prime_UTR	20892803	20892828	20892803	ID=Msa0283590-mRNA-1:three_prime_utr;Parent=Msa0283590-mRNA-1

Gene Sequence

>Msa0283590

ATGTTGGCTATCGATTCTACAAGAAAGATGTCATTTAATAGAACAATTAGTAACGGTGATTTGGCAATTGTTTATGCAAGGCATGACAACATGAAGCCAGTAACGGTATCCGAGGGATCGGTTTTACAGAATCGATTCGGTGTTTTCAAACATTCAGATTGGATAGGAAAGTCATTTGGGTCTAAAGTATTCAGCAATAAGGGCGGTTTTGTTTACTTATTAGCACCTACTCCTGAATTGTGGACTTTAGTTTTAAGCCACAGGACACAGATTCTATATGTTGCAGATATCAGCTTTGTTGTTATGTATTTGGAGATTGTTCCTGGTTGTGTCGTTCTTGAATCTGGTACTGGAAGTGGGTCTTTAACTACTTCACTTGCAAGGGCAGTTGCTCCTACAGGACATGTTTATACGTTTGATTTTCACGAACAAAGATCTGGATCAGCTAGGGATGACTTTGAGAAGATTGGCATAAGCAGCTTAGTCACTGCGGGAGTGAGGGACATTCAAGGTGAGGGGTTTCCTGAAGAATTTGCTGGCTTGGCTGATGCAGTTTTTTTGGATCTACCTCAACCTTGGCTAGCTATTCCTTCAGCTGCAAAAATGTTACGACATGACGGCACTTTATGTTCTTTCTCCCCGTGTATTGAACAAGTACAACGATCATGTGAAACAATGCAATCCAACTTCACCGATATAAGGACTTTTGAGGTACTCCTACGGACATACGAAGTTCGAGAAGGGAAAATGGAAAGCTTAGAGATTAACGGTGATGACGGCTCTAATGGTTCTCTTCCTTGCAAGAGGAGGCAACGTTCGGATGGAGCTAGTGTGGTTACCTATCCTAATTCTTCTTCTGTTATGGCTAGACCATGTGGTGAAGCTAGAGGTCACACTGGTTATTTGACATTTGCAAGACTTAATTAA

Protein sequence

>Msa0283590

MLAIDSTRKMSFNRTISNGDLAIVYARHDNMKPVTVSEGSVLQNRFGVFKHSDWIGKSFGSKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYVADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRSGSARDDFEKIGISSLVTAGVRDIQGEGFPEEFAGLADAVFLDLPQPWLAIPSAAKMLRHDGTLCSFSPCIEQVQRSCETMQSNFTDIRTFEVLLRTYEVREGKMESLEINGDDGSNGSLPCKRRQRSDGASVVTYPNSSSVMARPCGEARGHTGYLTFARLN*