AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0654870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0654870 MtrunA17_Chr4g0065831 100.000 130 0 0 1 130 1 130 8.31e-94 266
Msa0654870 MtrunA17_Chr4g0051921 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0654870 MtrunA17_Chr1g0205971 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0654870 MtrunA17_Chr8g0389371 52.000 125 60 0 6 130 5 129 1.43e-45 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0654870 AT5G59850.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0654870 AT1G07770.2 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0654870 AT1G07770.3 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0654870 AT1G07770.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0654870 AT3G46040.1 97.692 130 3 0 1 130 1 130 4.20e-92 262
Msa0654870 AT2G39590.1 91.538 130 11 0 1 130 1 130 4.49e-87 249
Msa0654870 AT4G29430.1 54.400 125 57 0 6 130 5 129 3.10e-47 149
Msa0654870 AT2G19720.1 53.600 125 58 0 6 130 5 129 3.24e-45 144

Find 45 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTCTCAACGCAGAATT+AGG 0.186540 4_3:+63234296 None:intergenic
GAAATTTGTAACAGCAAATA+TGG 0.239649 4_3:-63234159 Msa0654870:intron
AACTTCTCAAAATCTGAAAT+TGG 0.267676 4_3:+63232475 None:intergenic
GGATTAACGAAAGAATAATT+TGG 0.282896 4_3:+63232274 None:intergenic
TGGGTAAACTATTGTGCTCT+TGG 0.338767 4_3:-63232341 Msa0654870:three_prime_UTR
ATTACATGGATATTGTAATC+TGG 0.380843 4_3:-63232424 Msa0654870:three_prime_UTR
GGGTTACGGAAGCCTCAAAA+TGG 0.386846 4_3:+63234317 None:intergenic
GACTACCTCTGCTGGTATCA+TGG 0.414748 4_3:-63232573 Msa0654870:CDS
TATTGTAATCTGGATTACTT+AGG 0.431592 4_3:-63232414 Msa0654870:three_prime_UTR
AATCCATTTGTCATGATGAA+TGG 0.432930 4_3:-63232256 Msa0654870:three_prime_UTR
ATTAGTCCTCGTTTCGATGT+TGG 0.460967 4_3:-63233824 Msa0654870:CDS
TTTCAGCTGACCTGTCTTGA+GGG 0.461353 4_3:+63233764 None:intergenic
GCACAAGCACACAATTTCTC+TGG 0.472256 4_3:-63234262 Msa0654870:intron
AGGCCATTCATCATGACAAA+TGG 0.479914 4_3:+63232253 None:intergenic
TACGTTGATGATCACAGGTC+TGG 0.486815 4_3:-63233893 Msa0654870:CDS
AATGTTGGTGGTAAAGTGTT+GGG 0.506719 4_3:-63232527 Msa0654870:CDS
AGGATGGCCTAATCATAACT+TGG 0.529437 4_3:+63234072 None:intergenic
GGAAGCGCCAAGTTATGATT+AGG 0.530843 4_3:-63234079 Msa0654870:CDS
ATTGTCTTGACTACCTCTGC+TGG 0.534592 4_3:-63232581 Msa0654870:CDS
GAATGTTGGTGGTAAAGTGT+TGG 0.537027 4_3:-63232528 Msa0654870:CDS
TCGAATACGTTGATGATCAC+AGG 0.543527 4_3:-63233898 Msa0654870:CDS
TCAACGCAGAATTAGGGTTA+CGG 0.543710 4_3:+63234303 None:intergenic
ACTGTCTCAACGCAGAATTA+GGG 0.547220 4_3:+63234297 None:intergenic
AGATTGAAGGATGGACCGCT+AGG 0.554548 4_3:-63233793 Msa0654870:CDS
TATGTTGCAGAACTCATACT+TGG 0.559822 4_3:+63232217 None:intergenic
AAAATTGTCGTGGAATTGAA+TGG 0.560179 4_3:-63233869 Msa0654870:CDS
TAGGCTTCTTCCCTCAAGAC+AGG 0.565892 4_3:-63233774 Msa0654870:intron
GCTAGGAGAAAGAATGTTGG+TGG 0.567141 4_3:-63232539 Msa0654870:CDS
TTGTAACAGCAAATATGGTG+AGG 0.575157 4_3:-63234154 Msa0654870:intron
TGTAACAGCAAATATGGTGA+GGG 0.583163 4_3:-63234153 Msa0654870:intron
GAGGCTAGGAGAAAGAATGT+TGG 0.584494 4_3:-63232542 Msa0654870:CDS
TCATGGATCATGAAGAGGCT+AGG 0.585008 4_3:-63232556 Msa0654870:CDS
CAGGTCTGGCAAAATTGTCG+TGG 0.615939 4_3:-63233879 Msa0654870:CDS
ATGTACAATGCTGAGAAACG+TGG 0.619087 4_3:-63234101 Msa0654870:CDS
GTTGGTGTCAAAGAGATTGA+AGG 0.620427 4_3:-63233806 Msa0654870:CDS
CTTATCGTCATGCAAAAGCA+TGG 0.625917 4_3:-63234029 Msa0654870:intron
AATGGAAGATTGAATAAGTG+TGG 0.630140 4_3:-63233851 Msa0654870:CDS
AGAGAAATTGTGTGCTTGTG+CGG 0.632079 4_3:+63234264 None:intergenic
TGGTATCATGGATCATGAAG+AGG 0.639197 4_3:-63232561 Msa0654870:CDS
ATGATCCATGATACCAGCAG+AGG 0.644078 4_3:+63232568 None:intergenic
GTGTCAAAGAGATTGAAGGA+TGG 0.661917 4_3:-63233802 Msa0654870:CDS
TGTACAATGCTGAGAAACGT+GGG 0.665211 4_3:-63234100 Msa0654870:CDS
TACTTGGTATGCTCTAGCAG+AGG 0.680139 4_3:+63232233 None:intergenic
TTGACACCAACATCGAAACG+AGG 0.688564 4_3:+63233818 None:intergenic
TCTTGAGGGAAGAAGCCTAG+CGG 0.735612 4_3:+63233778 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAATATTAAAAGAT+GGG + chr4_3:63233627-63233646 None:intergenic 10.0%
!! TAAATGAAAATATTAAAAGA+TGG + chr4_3:63233628-63233647 None:intergenic 10.0%
!! AAATGAAAATATTAAAAGAT+GGG + chr4_3:63233627-63233646 None:intergenic 10.0%
!! TAAATGAAAATATTAAAAGA+TGG + chr4_3:63233628-63233647 None:intergenic 10.0%
!! AATTATAAAAAACAGCTTAT+AGG - chr4_3:63233042-63233061 Msa0654870:intron 15.0%
!! TTATAAGACAAACTTAATTA+GGG + chr4_3:63233204-63233223 None:intergenic 15.0%
!!! AATTTCTTATTATGCTTTTA+TGG - chr4_3:63233437-63233456 Msa0654870:intron 15.0%
!!! ATTTCTTATTATGCTTTTAT+GGG - chr4_3:63233438-63233457 Msa0654870:intron 15.0%
!!! CTAATTATGCTTTTATTTAT+TGG - chr4_3:63233536-63233555 Msa0654870:intron 15.0%
!! TAAACATTACAATTGAATAA+TGG + chr4_3:63233680-63233699 None:intergenic 15.0%
!! TACATTTAAAGAAAAACTAA+TGG - chr4_3:63233750-63233769 Msa0654870:intron 15.0%
!! AATTATAAAAAACAGCTTAT+AGG - chr4_3:63233042-63233061 Msa0654870:intron 15.0%
!! TTATAAGACAAACTTAATTA+GGG + chr4_3:63233204-63233223 None:intergenic 15.0%
!!! AATTTCTTATTATGCTTTTA+TGG - chr4_3:63233437-63233456 Msa0654870:intron 15.0%
!!! ATTTCTTATTATGCTTTTAT+GGG - chr4_3:63233438-63233457 Msa0654870:intron 15.0%
!!! CTAATTATGCTTTTATTTAT+TGG - chr4_3:63233536-63233555 Msa0654870:intron 15.0%
!! TAAACATTACAATTGAATAA+TGG + chr4_3:63233680-63233699 None:intergenic 15.0%
!! TACATTTAAAGAAAAACTAA+TGG - chr4_3:63233750-63233769 Msa0654870:intron 15.0%
!!! ATCAAATAAAAACCATTTTG+AGG - chr4_3:63232226-63232245 Msa0654870:three_prime_UTR 20.0%
!!! GATGATATTGTATACTTTTT+TGG - chr4_3:63232613-63232632 Msa0654870:intron 20.0%
!! CTTATAAGACAAACTTAATT+AGG + chr4_3:63233205-63233224 None:intergenic 20.0%
!! TAAATTCAAACCGTTATTAA+TGG - chr4_3:63233404-63233423 Msa0654870:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG - chr4_3:63233439-63233458 Msa0654870:intron 20.0%
!! AAAATATTAAAAGATGGGAT+GGG + chr4_3:63233622-63233641 None:intergenic 20.0%
!! AAAGAAAAACTAATGGTTAA+AGG - chr4_3:63233757-63233776 Msa0654870:intron 20.0%
!! AAGAAAAACTAATGGTTAAA+GGG - chr4_3:63233758-63233777 Msa0654870:intron 20.0%
!!! TTTTGTGCTAAATTGAATTT+TGG - chr4_3:63234194-63234213 Msa0654870:intron 20.0%
!!! TTTGTGCTAAATTGAATTTT+GGG - chr4_3:63234195-63234214 Msa0654870:intron 20.0%
!!! ATCAAATAAAAACCATTTTG+AGG - chr4_3:63232226-63232245 Msa0654870:three_prime_UTR 20.0%
!!! GATGATATTGTATACTTTTT+TGG - chr4_3:63232613-63232632 Msa0654870:intron 20.0%
!! CTTATAAGACAAACTTAATT+AGG + chr4_3:63233205-63233224 None:intergenic 20.0%
!! TAAATTCAAACCGTTATTAA+TGG - chr4_3:63233404-63233423 Msa0654870:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG - chr4_3:63233439-63233458 Msa0654870:intron 20.0%
!! AAAATATTAAAAGATGGGAT+GGG + chr4_3:63233622-63233641 None:intergenic 20.0%
!! AAAGAAAAACTAATGGTTAA+AGG - chr4_3:63233757-63233776 Msa0654870:intron 20.0%
!! AAGAAAAACTAATGGTTAAA+GGG - chr4_3:63233758-63233777 Msa0654870:intron 20.0%
!!! TTTTGTGCTAAATTGAATTT+TGG - chr4_3:63234194-63234213 Msa0654870:intron 20.0%
!!! TTTGTGCTAAATTGAATTTT+GGG - chr4_3:63234195-63234214 Msa0654870:intron 20.0%
! GAAATTTGTAACAGCAAATA+TGG - chr4_3:63232396-63232415 Msa0654870:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG + chr4_3:63232506-63232525 None:intergenic 25.0%
! AAAACATTATCCCACAAAAT+GGG + chr4_3:63232583-63232602 None:intergenic 25.0%
! AAAAACATTATCCCACAAAA+TGG + chr4_3:63232584-63232603 None:intergenic 25.0%
!!! TTGTATACTTTTTTGGTTGT+AGG - chr4_3:63232620-63232639 Msa0654870:intron 25.0%
!!! TTTTTGGTTGTAGGATATAT+TGG - chr4_3:63232629-63232648 Msa0654870:intron 25.0%
! GAGATTTATAAGACAAAACT+GGG + chr4_3:63232819-63232838 None:intergenic 25.0%
! TCAAACTACTATGATCTTTA+TGG + chr4_3:63232852-63232871 None:intergenic 25.0%
! TCAAATAAGTCATTCAAAAC+AGG + chr4_3:63232923-63232942 None:intergenic 25.0%
! AAGTTTGTCTTATAAGTTCT+TGG - chr4_3:63233209-63233228 Msa0654870:intron 25.0%
! AGTTTGTCTTATAAGTTCTT+GGG - chr4_3:63233210-63233229 Msa0654870:intron 25.0%
! TCATGAATCATTTCTAATGA+CGG - chr4_3:63233375-63233394 Msa0654870:intron 25.0%
!! AAATAAAAGCATAATTAGCG+AGG + chr4_3:63233534-63233553 None:intergenic 25.0%
! GAAAATATTAAAAGATGGGA+TGG + chr4_3:63233623-63233642 None:intergenic 25.0%
! AATTGAATAATGGTTGGAAA+AGG + chr4_3:63233670-63233689 None:intergenic 25.0%
! CATTACAATTGAATAATGGT+TGG + chr4_3:63233676-63233695 None:intergenic 25.0%
! AGAAAAACTAATGGTTAAAG+GGG - chr4_3:63233759-63233778 Msa0654870:intron 25.0%
! GCAAAGTATATAATGATTGT+CGG + chr4_3:63233796-63233815 None:intergenic 25.0%
!! GTATCATATGATTTTTCTTC+TGG - chr4_3:63233911-63233930 Msa0654870:CDS 25.0%
!! AACTTCTCAAAATCTGAAAT+TGG + chr4_3:63234083-63234102 None:intergenic 25.0%
!!! TTTTGAGAAGTTTTAGTGTT+TGG - chr4_3:63234091-63234110 Msa0654870:CDS 25.0%
!!! TTTGAGAAGTTTTAGTGTTT+GGG - chr4_3:63234092-63234111 Msa0654870:CDS 25.0%
!! CGAATTCAGTTTTTATTACA+TGG - chr4_3:63234117-63234136 Msa0654870:CDS 25.0%
! ATTACATGGATATTGTAATC+TGG - chr4_3:63234131-63234150 Msa0654870:CDS 25.0%
! TATTGTAATCTGGATTACTT+AGG - chr4_3:63234141-63234160 Msa0654870:CDS 25.0%
!!! TAAGCTTTTAATTTGCACTT+TGG - chr4_3:63234168-63234187 Msa0654870:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG + chr4_3:63234284-63234303 None:intergenic 25.0%
! GAAATTTGTAACAGCAAATA+TGG - chr4_3:63232396-63232415 Msa0654870:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG + chr4_3:63232506-63232525 None:intergenic 25.0%
! AAAACATTATCCCACAAAAT+GGG + chr4_3:63232583-63232602 None:intergenic 25.0%
! AAAAACATTATCCCACAAAA+TGG + chr4_3:63232584-63232603 None:intergenic 25.0%
!!! TTGTATACTTTTTTGGTTGT+AGG - chr4_3:63232620-63232639 Msa0654870:intron 25.0%
!!! TTTTTGGTTGTAGGATATAT+TGG - chr4_3:63232629-63232648 Msa0654870:intron 25.0%
! GAGATTTATAAGACAAAACT+GGG + chr4_3:63232819-63232838 None:intergenic 25.0%
! TCAAACTACTATGATCTTTA+TGG + chr4_3:63232852-63232871 None:intergenic 25.0%
! TCAAATAAGTCATTCAAAAC+AGG + chr4_3:63232923-63232942 None:intergenic 25.0%
! AAGTTTGTCTTATAAGTTCT+TGG - chr4_3:63233209-63233228 Msa0654870:intron 25.0%
! AGTTTGTCTTATAAGTTCTT+GGG - chr4_3:63233210-63233229 Msa0654870:intron 25.0%
! TCATGAATCATTTCTAATGA+CGG - chr4_3:63233375-63233394 Msa0654870:intron 25.0%
!! AAATAAAAGCATAATTAGCG+AGG + chr4_3:63233534-63233553 None:intergenic 25.0%
! GAAAATATTAAAAGATGGGA+TGG + chr4_3:63233623-63233642 None:intergenic 25.0%
! AATTGAATAATGGTTGGAAA+AGG + chr4_3:63233670-63233689 None:intergenic 25.0%
! CATTACAATTGAATAATGGT+TGG + chr4_3:63233676-63233695 None:intergenic 25.0%
! AGAAAAACTAATGGTTAAAG+GGG - chr4_3:63233759-63233778 Msa0654870:intron 25.0%
! GCAAAGTATATAATGATTGT+CGG + chr4_3:63233796-63233815 None:intergenic 25.0%
!! GTATCATATGATTTTTCTTC+TGG - chr4_3:63233911-63233930 Msa0654870:CDS 25.0%
!! AACTTCTCAAAATCTGAAAT+TGG + chr4_3:63234083-63234102 None:intergenic 25.0%
!!! TTTTGAGAAGTTTTAGTGTT+TGG - chr4_3:63234091-63234110 Msa0654870:CDS 25.0%
!!! TTTGAGAAGTTTTAGTGTTT+GGG - chr4_3:63234092-63234111 Msa0654870:CDS 25.0%
!! CGAATTCAGTTTTTATTACA+TGG - chr4_3:63234117-63234136 Msa0654870:CDS 25.0%
! ATTACATGGATATTGTAATC+TGG - chr4_3:63234131-63234150 Msa0654870:CDS 25.0%
! TATTGTAATCTGGATTACTT+AGG - chr4_3:63234141-63234160 Msa0654870:CDS 25.0%
!!! TAAGCTTTTAATTTGCACTT+TGG - chr4_3:63234168-63234187 Msa0654870:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG + chr4_3:63234284-63234303 None:intergenic 25.0%
!! TTGATAATCACTTTTGAGGA+TGG + chr4_3:63232502-63232521 None:intergenic 30.0%
AAACATTATCCCACAAAATG+GGG + chr4_3:63232582-63232601 None:intergenic 30.0%
! TGGGATAATGTTTTTCTATG+TGG - chr4_3:63232589-63232608 Msa0654870:CDS 30.0%
AAAATTGTCGTGGAATTGAA+TGG - chr4_3:63232686-63232705 Msa0654870:intron 30.0%
AATGGAAGATTGAATAAGTG+TGG - chr4_3:63232704-63232723 Msa0654870:intron 30.0%
CGAGATTTATAAGACAAAAC+TGG + chr4_3:63232820-63232839 None:intergenic 30.0%
! TCCATTGACATAAGTTTTCT+AGG - chr4_3:63232948-63232967 Msa0654870:intron 30.0%
TCCTAGAAAACTTATGTCAA+TGG + chr4_3:63232952-63232971 None:intergenic 30.0%
GAACTTATGAAATCTGCTTA+TGG - chr4_3:63232981-63233000 Msa0654870:intron 30.0%
AAATAAGCCAATACAAGCTT+GGG + chr4_3:63233014-63233033 None:intergenic 30.0%
AAAATAAGCCAATACAAGCT+TGG + chr4_3:63233015-63233034 None:intergenic 30.0%
AAACTTAATTAGGGACTGTT+TGG + chr4_3:63233195-63233214 None:intergenic 30.0%
TTGACTTATGCTTCATACAT+TGG - chr4_3:63233279-63233298 Msa0654870:intron 30.0%
TCAAACCGTTATTAATGGTT+AGG - chr4_3:63233409-63233428 Msa0654870:intron 30.0%
ATACGCCTAACCATTAATAA+CGG + chr4_3:63233417-63233436 None:intergenic 30.0%
! TTATTATGCTTTTATGGGGT+GGG - chr4_3:63233443-63233462 Msa0654870:intron 30.0%
TAAAATCTGTATTCCCCATA+TGG + chr4_3:63233732-63233751 None:intergenic 30.0%
GAAAAACTAATGGTTAAAGG+GGG - chr4_3:63233760-63233779 Msa0654870:intron 30.0%
TATACTTTGCAGTAAATCGA+TGG - chr4_3:63233806-63233825 Msa0654870:CDS 30.0%
ATTTGAGCAACCAATAGTTA+GGG + chr4_3:63233938-63233957 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG - chr4_3:63234042-63234061 Msa0654870:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG - chr4_3:63234043-63234062 Msa0654870:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG + chr4_3:63234241-63234260 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG + chr4_3:63234242-63234261 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG - chr4_3:63234299-63234318 Msa0654870:five_prime_UTR 30.0%
!! TTGATAATCACTTTTGAGGA+TGG + chr4_3:63232502-63232521 None:intergenic 30.0%
AAACATTATCCCACAAAATG+GGG + chr4_3:63232582-63232601 None:intergenic 30.0%
! TGGGATAATGTTTTTCTATG+TGG - chr4_3:63232589-63232608 Msa0654870:CDS 30.0%
AAAATTGTCGTGGAATTGAA+TGG - chr4_3:63232686-63232705 Msa0654870:intron 30.0%
AATGGAAGATTGAATAAGTG+TGG - chr4_3:63232704-63232723 Msa0654870:intron 30.0%
CGAGATTTATAAGACAAAAC+TGG + chr4_3:63232820-63232839 None:intergenic 30.0%
! TCCATTGACATAAGTTTTCT+AGG - chr4_3:63232948-63232967 Msa0654870:intron 30.0%
TCCTAGAAAACTTATGTCAA+TGG + chr4_3:63232952-63232971 None:intergenic 30.0%
GAACTTATGAAATCTGCTTA+TGG - chr4_3:63232981-63233000 Msa0654870:intron 30.0%
AAATAAGCCAATACAAGCTT+GGG + chr4_3:63233014-63233033 None:intergenic 30.0%
AAAATAAGCCAATACAAGCT+TGG + chr4_3:63233015-63233034 None:intergenic 30.0%
AAACTTAATTAGGGACTGTT+TGG + chr4_3:63233195-63233214 None:intergenic 30.0%
TTGACTTATGCTTCATACAT+TGG - chr4_3:63233279-63233298 Msa0654870:intron 30.0%
TCAAACCGTTATTAATGGTT+AGG - chr4_3:63233409-63233428 Msa0654870:intron 30.0%
ATACGCCTAACCATTAATAA+CGG + chr4_3:63233417-63233436 None:intergenic 30.0%
! TTATTATGCTTTTATGGGGT+GGG - chr4_3:63233443-63233462 Msa0654870:intron 30.0%
TAAAATCTGTATTCCCCATA+TGG + chr4_3:63233732-63233751 None:intergenic 30.0%
GAAAAACTAATGGTTAAAGG+GGG - chr4_3:63233760-63233779 Msa0654870:intron 30.0%
TATACTTTGCAGTAAATCGA+TGG - chr4_3:63233806-63233825 Msa0654870:CDS 30.0%
ATTTGAGCAACCAATAGTTA+GGG + chr4_3:63233938-63233957 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG - chr4_3:63234042-63234061 Msa0654870:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG - chr4_3:63234043-63234062 Msa0654870:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG + chr4_3:63234241-63234260 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG + chr4_3:63234242-63234261 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG - chr4_3:63234299-63234318 Msa0654870:five_prime_UTR 30.0%
CAATTTCTCTGGTAAGATCT+AGG - chr4_3:63232304-63232323 Msa0654870:three_prime_UTR 35.0%
AGATCTAGGTTTCTTCGATT+TGG - chr4_3:63232318-63232337 Msa0654870:three_prime_UTR 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG - chr4_3:63232323-63232342 Msa0654870:three_prime_UTR 35.0%
TTGTAACAGCAAATATGGTG+AGG - chr4_3:63232401-63232420 Msa0654870:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG - chr4_3:63232402-63232421 Msa0654870:intron 35.0%
TACTGCACAATATGCAACTT+AGG - chr4_3:63232896-63232915 Msa0654870:intron 35.0%
ACTGCACAATATGCAACTTA+GGG - chr4_3:63232897-63232916 Msa0654870:intron 35.0%
CAATATTCCCAAGCTTGTAT+TGG - chr4_3:63233004-63233023 Msa0654870:intron 35.0%
TTAATTAGGGACTGTTTGGA+TGG + chr4_3:63233191-63233210 None:intergenic 35.0%
TGTCTTATAAGTTCTTGGGT+TGG - chr4_3:63233214-63233233 Msa0654870:intron 35.0%
! CTTATTATGCTTTTATGGGG+TGG - chr4_3:63233442-63233461 Msa0654870:intron 35.0%
TAGACGATATCTACAAGCAT+AGG + chr4_3:63233498-63233517 None:intergenic 35.0%
ACAAGCAACATAACATTCGA+TGG + chr4_3:63233889-63233908 None:intergenic 35.0%
GATTTGAGCAACCAATAGTT+AGG + chr4_3:63233939-63233958 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG - chr4_3:63233948-63233967 Msa0654870:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG - chr4_3:63234028-63234047 Msa0654870:intron 35.0%
CAATTTCTCTGGTAAGATCT+AGG - chr4_3:63232304-63232323 Msa0654870:three_prime_UTR 35.0%
AGATCTAGGTTTCTTCGATT+TGG - chr4_3:63232318-63232337 Msa0654870:three_prime_UTR 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG - chr4_3:63232323-63232342 Msa0654870:three_prime_UTR 35.0%
TTGTAACAGCAAATATGGTG+AGG - chr4_3:63232401-63232420 Msa0654870:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG - chr4_3:63232402-63232421 Msa0654870:intron 35.0%
TACTGCACAATATGCAACTT+AGG - chr4_3:63232896-63232915 Msa0654870:intron 35.0%
ACTGCACAATATGCAACTTA+GGG - chr4_3:63232897-63232916 Msa0654870:intron 35.0%
CAATATTCCCAAGCTTGTAT+TGG - chr4_3:63233004-63233023 Msa0654870:intron 35.0%
TTAATTAGGGACTGTTTGGA+TGG + chr4_3:63233191-63233210 None:intergenic 35.0%
TGTCTTATAAGTTCTTGGGT+TGG - chr4_3:63233214-63233233 Msa0654870:intron 35.0%
! CTTATTATGCTTTTATGGGG+TGG - chr4_3:63233442-63233461 Msa0654870:intron 35.0%
TAGACGATATCTACAAGCAT+AGG + chr4_3:63233498-63233517 None:intergenic 35.0%
ACAAGCAACATAACATTCGA+TGG + chr4_3:63233889-63233908 None:intergenic 35.0%
GATTTGAGCAACCAATAGTT+AGG + chr4_3:63233939-63233958 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG - chr4_3:63233948-63233967 Msa0654870:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG - chr4_3:63234028-63234047 Msa0654870:intron 35.0%
TCAACGCAGAATTAGGGTTA+CGG + chr4_3:63232255-63232274 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG + chr4_3:63232261-63232280 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG + chr4_3:63232294-63232313 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG - chr4_3:63232454-63232473 Msa0654870:three_prime_UTR 40.0%
TGTACAATGCTGAGAAACGT+GGG - chr4_3:63232455-63232474 Msa0654870:three_prime_UTR 40.0%
AGGATGGCCTAATCATAACT+TGG + chr4_3:63232486-63232505 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG + chr4_3:63232528-63232547 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG - chr4_3:63232526-63232545 Msa0654870:CDS 40.0%
! ATGTAGTTGACCCCATTTTG+TGG - chr4_3:63232569-63232588 Msa0654870:CDS 40.0%
! TGTAGTTGACCCCATTTTGT+GGG - chr4_3:63232570-63232589 Msa0654870:CDS 40.0%
!! TCGAATACGTTGATGATCAC+AGG - chr4_3:63232657-63232676 Msa0654870:intron 40.0%
ATTAGTCCTCGTTTCGATGT+TGG - chr4_3:63232731-63232750 Msa0654870:intron 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG - chr4_3:63232749-63232768 Msa0654870:intron 40.0%
GTGTCAAAGAGATTGAAGGA+TGG - chr4_3:63232753-63232772 Msa0654870:intron 40.0%
!! TTCTTGGGTTGGAATTGTAG+AGG - chr4_3:63233225-63233244 Msa0654870:intron 40.0%
!! TCTTGGGTTGGAATTGTAGA+GGG - chr4_3:63233226-63233245 Msa0654870:intron 40.0%
TAAGTCAAGACAAACACTGG+CGG + chr4_3:63233267-63233286 None:intergenic 40.0%
GCATAAGTCAAGACAAACAC+TGG + chr4_3:63233270-63233289 None:intergenic 40.0%
CGTAAGTGAGTGAGACATTT+GGG + chr4_3:63233327-63233346 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+CGG - chr4_3:63233325-63233344 Msa0654870:intron 40.0%
CAAATGTCTCACTCACTTAC+GGG - chr4_3:63233326-63233345 Msa0654870:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG - chr4_3:63233460-63233479 Msa0654870:intron 40.0%
TCTACAAGCATAGGTAGAGT+GGG + chr4_3:63233489-63233508 None:intergenic 40.0%
ATCTACAAGCATAGGTAGAG+TGG + chr4_3:63233490-63233509 None:intergenic 40.0%
AGACAGAAACCTGTTCCATA+TGG - chr4_3:63233714-63233733 Msa0654870:intron 40.0%
GACAGAAACCTGTTCCATAT+GGG - chr4_3:63233715-63233734 Msa0654870:intron 40.0%
ACAGAAACCTGTTCCATATG+GGG - chr4_3:63233716-63233735 Msa0654870:intron 40.0%
CTGAAGTTGCTATCATCATC+TGG - chr4_3:63233859-63233878 Msa0654870:CDS 40.0%
TTCTTCTGGTCCCTAACTAT+TGG - chr4_3:63233925-63233944 Msa0654870:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG - chr4_3:63233947-63233966 Msa0654870:intron 40.0%
TGGTATCATGGATCATGAAG+AGG - chr4_3:63233994-63234013 Msa0654870:intron 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG - chr4_3:63234027-63234046 Msa0654870:intron 40.0%
TGGGTAAACTATTGTGCTCT+TGG - chr4_3:63234214-63234233 Msa0654870:intron 40.0%
AGGCCATTCATCATGACAAA+TGG + chr4_3:63234305-63234324 None:intergenic 40.0%
TCAACGCAGAATTAGGGTTA+CGG + chr4_3:63232255-63232274 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG + chr4_3:63232261-63232280 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG + chr4_3:63232294-63232313 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG - chr4_3:63232454-63232473 Msa0654870:three_prime_UTR 40.0%
TGTACAATGCTGAGAAACGT+GGG - chr4_3:63232455-63232474 Msa0654870:three_prime_UTR 40.0%
AGGATGGCCTAATCATAACT+TGG + chr4_3:63232486-63232505 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG + chr4_3:63232528-63232547 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG - chr4_3:63232526-63232545 Msa0654870:CDS 40.0%
! ATGTAGTTGACCCCATTTTG+TGG - chr4_3:63232569-63232588 Msa0654870:CDS 40.0%
! TGTAGTTGACCCCATTTTGT+GGG - chr4_3:63232570-63232589 Msa0654870:CDS 40.0%
!! TCGAATACGTTGATGATCAC+AGG - chr4_3:63232657-63232676 Msa0654870:intron 40.0%
ATTAGTCCTCGTTTCGATGT+TGG - chr4_3:63232731-63232750 Msa0654870:intron 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG - chr4_3:63232749-63232768 Msa0654870:intron 40.0%
GTGTCAAAGAGATTGAAGGA+TGG - chr4_3:63232753-63232772 Msa0654870:intron 40.0%
!! TTCTTGGGTTGGAATTGTAG+AGG - chr4_3:63233225-63233244 Msa0654870:intron 40.0%
!! TCTTGGGTTGGAATTGTAGA+GGG - chr4_3:63233226-63233245 Msa0654870:intron 40.0%
TAAGTCAAGACAAACACTGG+CGG + chr4_3:63233267-63233286 None:intergenic 40.0%
GCATAAGTCAAGACAAACAC+TGG + chr4_3:63233270-63233289 None:intergenic 40.0%
CGTAAGTGAGTGAGACATTT+GGG + chr4_3:63233327-63233346 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+CGG - chr4_3:63233325-63233344 Msa0654870:intron 40.0%
CAAATGTCTCACTCACTTAC+GGG - chr4_3:63233326-63233345 Msa0654870:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG - chr4_3:63233460-63233479 Msa0654870:intron 40.0%
TCTACAAGCATAGGTAGAGT+GGG + chr4_3:63233489-63233508 None:intergenic 40.0%
ATCTACAAGCATAGGTAGAG+TGG + chr4_3:63233490-63233509 None:intergenic 40.0%
AGACAGAAACCTGTTCCATA+TGG - chr4_3:63233714-63233733 Msa0654870:intron 40.0%
GACAGAAACCTGTTCCATAT+GGG - chr4_3:63233715-63233734 Msa0654870:intron 40.0%
ACAGAAACCTGTTCCATATG+GGG - chr4_3:63233716-63233735 Msa0654870:intron 40.0%
CTGAAGTTGCTATCATCATC+TGG - chr4_3:63233859-63233878 Msa0654870:CDS 40.0%
TTCTTCTGGTCCCTAACTAT+TGG - chr4_3:63233925-63233944 Msa0654870:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG - chr4_3:63233947-63233966 Msa0654870:intron 40.0%
TGGTATCATGGATCATGAAG+AGG - chr4_3:63233994-63234013 Msa0654870:intron 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG - chr4_3:63234027-63234046 Msa0654870:intron 40.0%
TGGGTAAACTATTGTGCTCT+TGG - chr4_3:63234214-63234233 Msa0654870:intron 40.0%
AGGCCATTCATCATGACAAA+TGG + chr4_3:63234305-63234324 None:intergenic 40.0%
CACTGTCTCAACGCAGAATT+AGG + chr4_3:63232262-63232281 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG - chr4_3:63232293-63232312 Msa0654870:three_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG - chr4_3:63232476-63232495 Msa0654870:three_prime_UTR 45.0%
!! TACGTTGATGATCACAGGTC+TGG - chr4_3:63232662-63232681 Msa0654870:intron 45.0%
TTGACACCAACATCGAAACG+AGG + chr4_3:63232740-63232759 None:intergenic 45.0%
TTTCAGCTGACCTGTCTTGA+GGG + chr4_3:63232794-63232813 None:intergenic 45.0%
! TTTTCAGCTGACCTGTCTTG+AGG + chr4_3:63232795-63232814 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG - chr4_3:63233227-63233246 Msa0654870:intron 45.0%
CCGTAAGTGAGTGAGACATT+TGG + chr4_3:63233328-63233347 None:intergenic 45.0%
CACTCACTTACGGGACTATT+TGG - chr4_3:63233335-63233354 Msa0654870:intron 45.0%
CTGTATTCCCCATATGGAAC+AGG + chr4_3:63233726-63233745 None:intergenic 45.0%
ATTGTCTTGACTACCTCTGC+TGG - chr4_3:63233974-63233993 Msa0654870:intron 45.0%
ATGATCCATGATACCAGCAG+AGG + chr4_3:63233990-63234009 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG - chr4_3:63233999-63234018 Msa0654870:intron 45.0%
GAGGCTAGGAGAAAGAATGT+TGG - chr4_3:63234013-63234032 Msa0654870:intron 45.0%
GCTAGGAGAAAGAATGTTGG+TGG - chr4_3:63234016-63234035 Msa0654870:intron 45.0%
TACTTGGTATGCTCTAGCAG+AGG + chr4_3:63234325-63234344 None:intergenic 45.0%
CACTGTCTCAACGCAGAATT+AGG + chr4_3:63232262-63232281 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG - chr4_3:63232293-63232312 Msa0654870:three_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG - chr4_3:63232476-63232495 Msa0654870:three_prime_UTR 45.0%
!! TACGTTGATGATCACAGGTC+TGG - chr4_3:63232662-63232681 Msa0654870:intron 45.0%
TTGACACCAACATCGAAACG+AGG + chr4_3:63232740-63232759 None:intergenic 45.0%
TTTCAGCTGACCTGTCTTGA+GGG + chr4_3:63232794-63232813 None:intergenic 45.0%
! TTTTCAGCTGACCTGTCTTG+AGG + chr4_3:63232795-63232814 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG - chr4_3:63233227-63233246 Msa0654870:intron 45.0%
CCGTAAGTGAGTGAGACATT+TGG + chr4_3:63233328-63233347 None:intergenic 45.0%
CACTCACTTACGGGACTATT+TGG - chr4_3:63233335-63233354 Msa0654870:intron 45.0%
CTGTATTCCCCATATGGAAC+AGG + chr4_3:63233726-63233745 None:intergenic 45.0%
ATTGTCTTGACTACCTCTGC+TGG - chr4_3:63233974-63233993 Msa0654870:intron 45.0%
ATGATCCATGATACCAGCAG+AGG + chr4_3:63233990-63234009 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG - chr4_3:63233999-63234018 Msa0654870:intron 45.0%
GAGGCTAGGAGAAAGAATGT+TGG - chr4_3:63234013-63234032 Msa0654870:intron 45.0%
GCTAGGAGAAAGAATGTTGG+TGG - chr4_3:63234016-63234035 Msa0654870:intron 45.0%
TACTTGGTATGCTCTAGCAG+AGG + chr4_3:63234325-63234344 None:intergenic 45.0%
GGGTTACGGAAGCCTCAAAA+TGG + chr4_3:63232241-63232260 None:intergenic 50.0%
CAGGTCTGGCAAAATTGTCG+TGG - chr4_3:63232676-63232695 Msa0654870:intron 50.0%
AGATTGAAGGATGGACCGCT+AGG - chr4_3:63232762-63232781 Msa0654870:intron 50.0%
TCTTGAGGGAAGAAGCCTAG+CGG + chr4_3:63232780-63232799 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG - chr4_3:63232781-63232800 Msa0654870:intron 50.0%
!! CAAACACTGGCGGATTGTTC+TGG + chr4_3:63233257-63233276 None:intergenic 50.0%
ACAAGCATAGGTAGAGTGGG+AGG + chr4_3:63233486-63233505 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG - chr4_3:63233982-63234001 Msa0654870:intron 50.0%
GGGTTACGGAAGCCTCAAAA+TGG + chr4_3:63232241-63232260 None:intergenic 50.0%
CAGGTCTGGCAAAATTGTCG+TGG - chr4_3:63232676-63232695 Msa0654870:intron 50.0%
AGATTGAAGGATGGACCGCT+AGG - chr4_3:63232762-63232781 Msa0654870:intron 50.0%
TCTTGAGGGAAGAAGCCTAG+CGG + chr4_3:63232780-63232799 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG - chr4_3:63232781-63232800 Msa0654870:intron 50.0%
!! CAAACACTGGCGGATTGTTC+TGG + chr4_3:63233257-63233276 None:intergenic 50.0%
ACAAGCATAGGTAGAGTGGG+AGG + chr4_3:63233486-63233505 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG - chr4_3:63233982-63234001 Msa0654870:intron 50.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 63232221 63234356 63232221 ID=Msa0654870;Name=Msa0654870
chr4_3 mRNA 63232221 63234356 63232221 ID=Msa0654870-mRNA-1;Parent=Msa0654870;Name=Msa0654870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=99|1|1|1|0.5|0.2|5|264|130
chr4_3 exon 63232221 63232376 63232221 ID=Msa0654870-mRNA-1:exon:17752;Parent=Msa0654870-mRNA-1
chr4_3 exon 63232406 63232612 63232406 ID=Msa0654870-mRNA-1:exon:17751;Parent=Msa0654870-mRNA-1
chr4_3 exon 63233775 63233935 63233775 ID=Msa0654870-mRNA-1:exon:17750;Parent=Msa0654870-mRNA-1
chr4_3 exon 63234030 63234167 63234030 ID=Msa0654870-mRNA-1:exon:17749;Parent=Msa0654870-mRNA-1
chr4_3 exon 63234263 63234356 63234263 ID=Msa0654870-mRNA-1:exon:17748;Parent=Msa0654870-mRNA-1
chr4_3 five_prime_UTR 63234263 63234356 63234263 ID=Msa0654870-mRNA-1:five_prime_utr;Parent=Msa0654870-mRNA-1
chr4_3 five_prime_UTR 63234163 63234167 63234163 ID=Msa0654870-mRNA-1:five_prime_utr;Parent=Msa0654870-mRNA-1
chr4_3 CDS 63234030 63234162 63234030 ID=Msa0654870-mRNA-1:cds;Parent=Msa0654870-mRNA-1
chr4_3 CDS 63233775 63233935 63233775 ID=Msa0654870-mRNA-1:cds;Parent=Msa0654870-mRNA-1
chr4_3 CDS 63232514 63232612 63232514 ID=Msa0654870-mRNA-1:cds;Parent=Msa0654870-mRNA-1
chr4_3 three_prime_UTR 63232406 63232513 63232406 ID=Msa0654870-mRNA-1:three_prime_utr;Parent=Msa0654870-mRNA-1
chr4_3 three_prime_UTR 63232221 63232376 63232221 ID=Msa0654870-mRNA-1:three_prime_utr;Parent=Msa0654870-mRNA-1
Gene Sequence

>Msa0654870

ATGGTGAGGGTTAGTGTTTTGAACGATGCACTGAAGAGCATGTACAATGCTGAGAAACGTGGGAAGCGCCAAGTTATGATTAGGCCATCCTCAAAAGTGATTATCAAATTCCTTATCGTCATGCAAAAGCATGGATATATTGGAGAGTTCGAATACGTTGATGATCACAGGTCTGGCAAAATTGTCGTGGAATTGAATGGAAGATTGAATAAGTGTGGTGTTATTAGTCCTCGTTTCGATGTTGGTGTCAAAGAGATTGAAGGATGGACCGCTAGGCTTCTTCCCTCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTTTTCTATTAG

Protein sequence

>Msa0654870

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*