Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171330 | XP_013468910.1 | 93.596 | 406 | 8 | 2 | 1 | 403 | 1 | 391 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171330 | A0A072VMB2 | 93.596 | 406 | 8 | 2 | 1 | 403 | 1 | 391 | 0.0 | 783 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009640 | Msa0171330 | 0.813584 | 2.377380e-51 | -8.615850e-47 |
| Msa0051960 | Msa0171330 | 0.807841 | 4.151201e-50 | -8.615850e-47 |
| Msa0052580 | Msa0171330 | 0.800682 | 1.285131e-48 | -8.615850e-47 |
| Msa0078700 | Msa0171330 | 0.848053 | 7.831894e-60 | -8.615850e-47 |
| Msa0090090 | Msa0171330 | 0.807455 | 5.013184e-50 | -8.615850e-47 |
| Msa0090380 | Msa0171330 | 0.813500 | 2.480151e-51 | -8.615850e-47 |
| Msa0094710 | Msa0171330 | 0.808027 | 3.788184e-50 | -8.615850e-47 |
| Msa0095940 | Msa0171330 | 0.833489 | 5.178795e-56 | -8.615850e-47 |
| Msa0101960 | Msa0171330 | 0.817446 | 3.283638e-52 | -8.615850e-47 |
| Msa0129770 | Msa0171330 | 0.805125 | 1.552493e-49 | -8.615850e-47 |
| Msa0137560 | Msa0171330 | 0.809247 | 2.079811e-50 | -8.615850e-47 |
| Msa0137860 | Msa0171330 | 0.800813 | 1.208435e-48 | -8.615850e-47 |
| Msa0139680 | Msa0171330 | 0.852434 | 4.628735e-61 | -8.615850e-47 |
| Msa0150620 | Msa0171330 | 0.807572 | 4.734875e-50 | -8.615850e-47 |
| Msa0171330 | Msa0295420 | 0.812360 | 4.408740e-51 | -8.615850e-47 |
| Msa0171330 | Msa0296900 | 0.816664 | 4.922505e-52 | -8.615850e-47 |
| Msa0171330 | Msa0335080 | 0.830253 | 3.258706e-55 | -8.615850e-47 |
| Msa0171330 | Msa0383900 | 0.804173 | 2.453208e-49 | -8.615850e-47 |
| Msa0171330 | Msa0415100 | 0.803102 | 4.092081e-49 | -8.615850e-47 |
| Msa0171330 | Msa0434400 | 0.801790 | 7.624005e-49 | -8.615850e-47 |
| Msa0171330 | Msa0517270 | 0.808977 | 2.375424e-50 | -8.615850e-47 |
| Msa0171330 | Msa0523980 | 0.801901 | 7.235645e-49 | -8.615850e-47 |
| Msa0171330 | Msa0523990 | 0.808460 | 3.063714e-50 | -8.615850e-47 |
| Msa0171330 | Msa0577490 | 0.819387 | 1.192933e-52 | -8.615850e-47 |
| Msa0171330 | Msa0588710 | 0.801549 | 8.543827e-49 | -8.615850e-47 |
| Msa0171330 | Msa0590810 | 0.811170 | 8.003187e-51 | -8.615850e-47 |
| Msa0171330 | Msa0592650 | 0.807854 | 4.123284e-50 | -8.615850e-47 |
| Msa0171330 | Msa0600590 | 0.806907 | 6.549548e-50 | -8.615850e-47 |
| Msa0171330 | Msa0631130 | 0.800685 | 1.283444e-48 | -8.615850e-47 |
| Msa0171330 | Msa0641130 | 0.801090 | 1.060705e-48 | -8.615850e-47 |
| Msa0171330 | Msa0658190 | 0.837869 | 4.029452e-57 | -8.615850e-47 |
| Msa0171330 | Msa0684130 | 0.809388 | 1.939113e-50 | -8.615850e-47 |
| Msa0171330 | Msa0703030 | 0.828379 | 9.289411e-55 | -8.615850e-47 |
| Msa0171330 | Msa0709140 | 0.853255 | 2.696155e-61 | -8.615850e-47 |
| Msa0171330 | Msa0744640 | 0.818794 | 1.627586e-52 | -8.615850e-47 |
| Msa0171330 | Msa0765140 | 0.800500 | 1.399638e-48 | -8.615850e-47 |
| Msa0171330 | Msa0804870 | 0.822435 | 2.372902e-53 | -8.615850e-47 |
| Msa0171330 | Msa0833270 | 0.829585 | 4.740963e-55 | -8.615850e-47 |
| Msa0171330 | Msa0841730 | 0.819750 | 9.857724e-53 | -8.615850e-47 |
| Msa0171330 | Msa0966580 | 0.804278 | 2.332604e-49 | -8.615850e-47 |
| Msa0171330 | Msa1008370 | 0.802029 | 6.809047e-49 | -8.615850e-47 |
| Msa0171330 | Msa1011250 | 0.810181 | 1.309296e-50 | -8.615850e-47 |
| Msa0171330 | Msa1069890 | 0.804812 | 1.804645e-49 | -8.615850e-47 |
| Msa0171330 | Msa1092310 | 0.810176 | 1.313008e-50 | -8.615850e-47 |
| Msa0171330 | Msa1102210 | 0.809506 | 1.829851e-50 | -8.615850e-47 |
| Msa0171330 | Msa1114670 | 0.812103 | 5.016461e-51 | -8.615850e-47 |
| Msa0171330 | Msa1116840 | 0.811483 | 6.845757e-51 | -8.615850e-47 |
| Msa0171330 | Msa1119920 | 0.820889 | 5.403323e-53 | -8.615850e-47 |
| Msa0171330 | Msa1120580 | 0.802525 | 5.384399e-49 | -8.615850e-47 |
| Msa0171330 | Msa1133700 | 0.803709 | 3.062307e-49 | -8.615850e-47 |
| Msa0171330 | Msa1136760 | 0.820693 | 5.995305e-53 | -8.615850e-47 |
| Msa0171330 | Msa1157110 | 0.811227 | 7.780806e-51 | -8.615850e-47 |
| Msa0171330 | Msa1159170 | 0.844913 | 5.631907e-59 | -8.615850e-47 |
| Msa0171330 | Msa1173800 | 0.840095 | 1.068976e-57 | -8.615850e-47 |
| Msa0171330 | Msa1187480 | 0.812212 | 4.749721e-51 | -8.615850e-47 |
| Msa0171330 | Msa1208990 | 0.809305 | 2.020855e-50 | -8.615850e-47 |
| Msa0171330 | Msa1238600 | 0.806168 | 9.375923e-50 | -8.615850e-47 |
| Msa0171330 | Msa1256060 | 0.841308 | 5.141896e-58 | -8.615850e-47 |
| Msa0171330 | Msa1296240 | 0.833492 | 5.170757e-56 | -8.615850e-47 |
| Msa0171330 | Msa1306830 | 0.835376 | 1.739214e-56 | -8.615850e-47 |
| Msa0171330 | Msa1307530 | 0.853868 | 1.797168e-61 | -8.615850e-47 |
| Msa0171330 | Msa1315480 | 0.802034 | 6.794424e-49 | -8.615850e-47 |
| Msa0171330 | Msa1362850 | 0.809905 | 1.502015e-50 | -8.615850e-47 |
| Msa0171330 | Msa1367790 | 0.806336 | 8.644949e-50 | -8.615850e-47 |
| Msa0171330 | Msa1395110 | 0.825378 | 4.842398e-54 | -8.615850e-47 |
| Msa0171330 | Msa1395250 | 0.812010 | 5.255811e-51 | -8.615850e-47 |
| Msa0171330 | Msa1398140 | 0.816008 | 6.899235e-52 | -8.615850e-47 |
| Msa0171330 | Msa1404050 | 0.830405 | 2.991725e-55 | -8.615850e-47 |
| Msa0171330 | Msa1433410 | 0.814823 | 1.265788e-51 | -8.615850e-47 |
| Msa0171330 | Msa1443620 | 0.801028 | 1.092187e-48 | -8.615850e-47 |
| Msa0171330 | Msa1447870 | 0.828332 | 9.533572e-55 | -8.615850e-47 |
| Msa0171330 | Msa1455200 | 0.807146 | 5.828690e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171330 | MtrunA17_Chr1g0189401 | 93.596 | 406 | 8 | 2 | 1 | 403 | 1 | 391 | 0.0 | 783 |
| Msa0171330 | MtrunA17_Chr2g0276851 | 55.337 | 356 | 151 | 3 | 51 | 403 | 34 | 384 | 1.35e-147 | 424 |
| Msa0171330 | MtrunA17_Chr2g0281421 | 46.667 | 405 | 190 | 5 | 12 | 403 | 1 | 392 | 4.35e-130 | 380 |
| Msa0171330 | MtrunA17_Chr4g0047961 | 57.235 | 311 | 126 | 3 | 94 | 403 | 60 | 364 | 1.73e-128 | 374 |
| Msa0171330 | MtrunA17_Chr7g0227041 | 42.897 | 359 | 181 | 9 | 41 | 394 | 51 | 390 | 3.78e-87 | 270 |
| Msa0171330 | MtrunA17_Chr3g0123571 | 46.026 | 302 | 144 | 7 | 90 | 391 | 98 | 380 | 2.21e-83 | 260 |
| Msa0171330 | MtrunA17_Chr8g0381611 | 48.148 | 270 | 127 | 6 | 90 | 359 | 89 | 345 | 2.16e-81 | 254 |
| Msa0171330 | MtrunA17_Chr8g0381601 | 44.371 | 302 | 149 | 7 | 90 | 391 | 97 | 379 | 8.47e-81 | 253 |
| Msa0171330 | MtrunA17_Chr4g0028891 | 48.106 | 264 | 122 | 7 | 90 | 352 | 118 | 367 | 7.04e-79 | 249 |
| Msa0171330 | MtrunA17_Chr2g0326801 | 40.597 | 335 | 180 | 8 | 60 | 394 | 64 | 379 | 1.34e-77 | 245 |
| Msa0171330 | MtrunA17_Chr3g0095271 | 59.494 | 79 | 8 | 2 | 232 | 309 | 6 | 61 | 1.02e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171330 | AT4G18530.1 | 56.298 | 389 | 142 | 5 | 35 | 402 | 8 | 389 | 1.41e-154 | 442 |
| Msa0171330 | AT4G18530.3 | 56.298 | 389 | 142 | 5 | 35 | 402 | 3 | 384 | 1.52e-154 | 441 |
| Msa0171330 | AT4G12840.2 | 54.897 | 388 | 150 | 5 | 32 | 403 | 16 | 394 | 8.82e-154 | 440 |
| Msa0171330 | AT4G12840.1 | 54.897 | 388 | 150 | 5 | 32 | 403 | 16 | 394 | 1.54e-153 | 439 |
| Msa0171330 | AT4G12840.3 | 60.194 | 309 | 100 | 4 | 109 | 403 | 1 | 300 | 1.16e-134 | 388 |
| Msa0171330 | AT1G11170.1 | 54.574 | 317 | 130 | 6 | 94 | 401 | 83 | 394 | 2.24e-121 | 359 |
| Msa0171330 | AT1G11170.6 | 54.574 | 317 | 130 | 6 | 94 | 401 | 83 | 394 | 2.24e-121 | 359 |
| Msa0171330 | AT1G11170.5 | 54.574 | 317 | 130 | 6 | 94 | 401 | 83 | 394 | 2.24e-121 | 359 |
| Msa0171330 | AT1G11170.7 | 54.574 | 317 | 130 | 6 | 94 | 401 | 83 | 394 | 2.24e-121 | 359 |
| Msa0171330 | AT4G18530.2 | 55.305 | 311 | 122 | 4 | 28 | 328 | 1 | 304 | 4.39e-121 | 353 |
| Msa0171330 | AT1G61240.8 | 54.114 | 316 | 132 | 4 | 94 | 400 | 13 | 324 | 7.96e-120 | 352 |
| Msa0171330 | AT1G61240.4 | 54.114 | 316 | 132 | 4 | 94 | 400 | 80 | 391 | 5.56e-119 | 352 |
| Msa0171330 | AT1G61240.5 | 54.114 | 316 | 132 | 4 | 94 | 400 | 80 | 391 | 5.56e-119 | 352 |
| Msa0171330 | AT1G61240.6 | 54.114 | 316 | 132 | 4 | 94 | 400 | 80 | 391 | 5.56e-119 | 352 |
| Msa0171330 | AT1G61240.2 | 54.114 | 316 | 132 | 4 | 94 | 400 | 80 | 391 | 5.56e-119 | 352 |
| Msa0171330 | AT1G61240.1 | 54.114 | 316 | 132 | 4 | 94 | 400 | 80 | 391 | 5.56e-119 | 352 |
| Msa0171330 | AT1G61240.3 | 54.114 | 316 | 132 | 4 | 94 | 400 | 80 | 391 | 5.56e-119 | 352 |
| Msa0171330 | AT1G61240.7 | 53.952 | 291 | 124 | 3 | 94 | 384 | 80 | 360 | 2.32e-109 | 326 |
| Msa0171330 | AT1G11170.4 | 58.077 | 260 | 103 | 4 | 94 | 352 | 83 | 337 | 3.50e-109 | 325 |
| Msa0171330 | AT1G11170.8 | 58.077 | 260 | 103 | 4 | 94 | 352 | 83 | 337 | 3.50e-109 | 325 |
| Msa0171330 | AT1G11170.3 | 56.618 | 272 | 110 | 5 | 94 | 362 | 83 | 349 | 4.45e-109 | 325 |
| Msa0171330 | AT1G11170.2 | 56.780 | 236 | 96 | 4 | 94 | 328 | 83 | 313 | 5.89e-95 | 288 |
| Msa0171330 | AT1G67850.4 | 45.902 | 305 | 146 | 7 | 90 | 394 | 85 | 370 | 1.16e-82 | 258 |
| Msa0171330 | AT1G67850.6 | 45.902 | 305 | 146 | 7 | 90 | 394 | 101 | 386 | 2.13e-82 | 258 |
| Msa0171330 | AT1G67850.7 | 45.902 | 305 | 146 | 7 | 90 | 394 | 101 | 386 | 2.13e-82 | 258 |
| Msa0171330 | AT1G67850.1 | 45.902 | 305 | 146 | 7 | 90 | 394 | 101 | 386 | 2.13e-82 | 258 |
| Msa0171330 | AT1G67850.3 | 45.902 | 305 | 146 | 7 | 90 | 394 | 101 | 386 | 2.13e-82 | 258 |
| Msa0171330 | AT1G67850.2 | 45.902 | 305 | 146 | 7 | 90 | 394 | 101 | 386 | 2.13e-82 | 258 |
| Msa0171330 | AT1G67850.5 | 45.902 | 305 | 146 | 7 | 90 | 394 | 101 | 386 | 2.13e-82 | 258 |
| Msa0171330 | AT3G26440.4 | 41.144 | 367 | 186 | 11 | 31 | 391 | 12 | 354 | 9.72e-82 | 255 |
| Msa0171330 | AT3G26440.1 | 42.330 | 352 | 177 | 11 | 42 | 391 | 51 | 378 | 3.67e-81 | 254 |
| Msa0171330 | AT3G26440.2 | 42.330 | 352 | 177 | 11 | 42 | 391 | 51 | 378 | 3.67e-81 | 254 |
| Msa0171330 | AT3G26440.6 | 42.330 | 352 | 177 | 11 | 42 | 391 | 74 | 401 | 6.30e-81 | 255 |
| Msa0171330 | AT3G26440.5 | 42.330 | 352 | 177 | 11 | 42 | 391 | 74 | 401 | 6.58e-81 | 254 |
| Msa0171330 | AT3G27470.2 | 39.776 | 357 | 185 | 9 | 42 | 387 | 38 | 375 | 1.89e-80 | 253 |
| Msa0171330 | AT3G27470.1 | 39.776 | 357 | 185 | 9 | 42 | 387 | 38 | 375 | 1.89e-80 | 253 |
| Msa0171330 | AT3G27470.4 | 39.776 | 357 | 185 | 9 | 42 | 387 | 38 | 375 | 1.89e-80 | 253 |
| Msa0171330 | AT3G27470.3 | 39.776 | 357 | 185 | 9 | 42 | 387 | 38 | 375 | 1.89e-80 | 253 |
| Msa0171330 | AT1G24570.2 | 48.302 | 265 | 124 | 6 | 90 | 353 | 84 | 336 | 2.08e-80 | 253 |
| Msa0171330 | AT1G13000.2 | 44.918 | 305 | 149 | 7 | 90 | 394 | 105 | 390 | 2.25e-80 | 253 |
| Msa0171330 | AT1G13000.5 | 44.918 | 305 | 149 | 7 | 90 | 394 | 105 | 390 | 2.25e-80 | 253 |
| Msa0171330 | AT1G13000.4 | 44.918 | 305 | 149 | 7 | 90 | 394 | 105 | 390 | 2.25e-80 | 253 |
| Msa0171330 | AT1G13000.1 | 44.918 | 305 | 149 | 7 | 90 | 394 | 105 | 390 | 2.25e-80 | 253 |
| Msa0171330 | AT3G27470.5 | 39.776 | 357 | 185 | 9 | 42 | 387 | 38 | 375 | 4.10e-80 | 252 |
| Msa0171330 | AT3G26440.3 | 44.089 | 313 | 155 | 8 | 42 | 352 | 51 | 345 | 4.20e-80 | 251 |
| Msa0171330 | AT1G08040.3 | 43.092 | 304 | 154 | 7 | 90 | 393 | 84 | 368 | 2.97e-79 | 249 |
| Msa0171330 | AT1G08040.2 | 43.092 | 304 | 154 | 7 | 90 | 393 | 88 | 372 | 5.19e-79 | 249 |
| Msa0171330 | AT1G08040.4 | 43.092 | 304 | 154 | 7 | 90 | 393 | 88 | 372 | 5.19e-79 | 249 |
| Msa0171330 | AT1G08040.1 | 43.092 | 304 | 154 | 7 | 90 | 393 | 88 | 372 | 5.19e-79 | 249 |
| Msa0171330 | AT2G28310.2 | 43.934 | 305 | 152 | 7 | 90 | 394 | 81 | 366 | 5.79e-79 | 248 |
| Msa0171330 | AT2G28310.1 | 43.934 | 305 | 152 | 7 | 90 | 394 | 81 | 366 | 5.79e-79 | 248 |
| Msa0171330 | AT2G28310.3 | 43.934 | 305 | 152 | 7 | 90 | 394 | 81 | 366 | 5.79e-79 | 248 |
| Msa0171330 | AT1G24570.1 | 48.092 | 262 | 123 | 6 | 93 | 353 | 80 | 329 | 1.04e-78 | 248 |
| Msa0171330 | AT1G13000.3 | 49.791 | 239 | 108 | 5 | 90 | 328 | 105 | 331 | 1.14e-73 | 233 |
| Msa0171330 | AT1G11170.9 | 56.000 | 175 | 74 | 2 | 94 | 268 | 83 | 254 | 1.79e-64 | 207 |
| Msa0171330 | AT2G25905.1 | 55.833 | 120 | 51 | 2 | 127 | 245 | 109 | 227 | 4.76e-39 | 140 |
Find 92 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGAGCTGAGACCTTTA+TGG | 0.208347 | 1_4:-56028907 | Msa0171330:CDS |
| AAAGATACATTACATAAATA+AGG | 0.289084 | 1_4:-56029732 | Msa0171330:intron |
| TGTTTATATGTAATCTTTCC+AGG | 0.314586 | 1_4:-56029300 | Msa0171330:CDS |
| TTGTGTCTGGTACATGATTC+AGG | 0.381583 | 1_4:-56027247 | Msa0171330:intron |
| GCAGGTGATGACTTGATATC+TGG | 0.391084 | 1_4:+56029537 | None:intergenic |
| ACATTTAAAGCTGTTATTGA+TGG | 0.400949 | 1_4:-56027445 | Msa0171330:CDS |
| AGGTATTGTACATACTTCTC+AGG | 0.405666 | 1_4:+56027800 | None:intergenic |
| TGCACATGTTGCTATTGAAA+TGG | 0.405863 | 1_4:+56025942 | None:intergenic |
| AGTCTCGAGTACTTCGAGTT+TGG | 0.408882 | 1_4:-56028924 | Msa0171330:CDS |
| GCTTCAAAACACAAAATTCA+AGG | 0.409994 | 1_4:+56029358 | None:intergenic |
| AGTCGACAAGATGGTCAAAA+AGG | 0.413897 | 1_4:-56028228 | Msa0171330:intron |
| CACTACAATCGTCCCACTCT+TGG | 0.414064 | 1_4:-56026726 | Msa0171330:CDS |
| ACGTTGGGTCAAGGCGGTTA+AGG | 0.422001 | 1_4:-56025985 | Msa0171330:CDS |
| TTTCAGATGGATAGAAATGA+TGG | 0.430064 | 1_4:-56027298 | Msa0171330:intron |
| GAGCTGCGTGGCGTTGTGTC+TGG | 0.432485 | 1_4:-56027260 | Msa0171330:CDS |
| GTTTCTATTGTCAAAGAAGA+AGG | 0.437319 | 1_4:-56027665 | Msa0171330:CDS |
| GAACGACTTGATCCATGCTT+GGG | 0.445220 | 1_4:-56027140 | Msa0171330:CDS |
| CGTTGACATTTCCATCATAG+TGG | 0.448727 | 1_4:+56028084 | None:intergenic |
| CACGCAGCTCTTGAGAAAAC+AGG | 0.450284 | 1_4:+56027273 | None:intergenic |
| TTCAGATTCATCTCAGGAAA+AGG | 0.450344 | 1_4:-56026567 | Msa0171330:CDS |
| AGCTTGTTTGCGATGGCAGT+TGG | 0.451629 | 1_4:-56028269 | Msa0171330:CDS |
| TGCATACTTATGATAGATGC+AGG | 0.458594 | 1_4:-56029088 | Msa0171330:CDS |
| AAAGCTGTTATTGATGGTAA+AGG | 0.462651 | 1_4:-56027439 | Msa0171330:CDS |
| CCATTCTTCGACATCCATAA+AGG | 0.463933 | 1_4:+56028893 | None:intergenic |
| ATCGCAAACAAGCTGGTTGA+TGG | 0.464332 | 1_4:+56028278 | None:intergenic |
| CATATAGCGGTAGTCGATCA+AGG | 0.469047 | 1_4:-56028026 | Msa0171330:CDS |
| TGGAAGTGAAGCGTTACCTC+AGG | 0.471212 | 1_4:-56028951 | Msa0171330:CDS |
| GCAGCTTGGCTACTGTTCTC+AGG | 0.478528 | 1_4:-56027107 | Msa0171330:intron |
| ACGAATGGAAGAAATTCAAA+TGG | 0.484655 | 1_4:-56028064 | Msa0171330:CDS |
| GCAGGTTTCAGATTCATCTC+AGG | 0.487141 | 1_4:-56026573 | Msa0171330:intron |
| GTTATCTGTGCCTCCAAGAG+TGG | 0.494695 | 1_4:+56026713 | None:intergenic |
| TTCCTTTGGGATGAGGACCT+TGG | 0.496629 | 1_4:-56027839 | Msa0171330:CDS |
| TCATACTCAGCAACTATGTC+GGG | 0.496770 | 1_4:+56027869 | None:intergenic |
| AGAACGACTTGATCCATGCT+TGG | 0.497399 | 1_4:-56027141 | Msa0171330:CDS |
| AGTTGGTTGACGAAAGGAGC+GGG | 0.499875 | 1_4:+56029776 | None:intergenic |
| CGGTTAAGGAGGATAAATGT+TGG | 0.503478 | 1_4:-56025971 | Msa0171330:CDS |
| TTTCTATTGTCAAAGAAGAA+GGG | 0.503868 | 1_4:-56027664 | Msa0171330:CDS |
| ACAAATAATAAAAGTGCCCC+TGG | 0.506618 | 1_4:+56029282 | None:intergenic |
| ATATCAAGTCATCACCTGCT+AGG | 0.510981 | 1_4:-56029533 | Msa0171330:CDS |
| TACAATCGTCCCACTCTTGG+AGG | 0.517019 | 1_4:-56026723 | Msa0171330:CDS |
| TTGTTTAGTAGAAGCAGTGC+AGG | 0.518852 | 1_4:-56028979 | Msa0171330:intron |
| ATCATACTCAGCAACTATGT+CGG | 0.519378 | 1_4:+56027868 | None:intergenic |
| TTTATTCAATAAGGTTTGGA+GGG | 0.520682 | 1_4:-56025744 | Msa0171330:three_prime_UTR |
| AGCACAGCTCCTCCTTGCAC+CGG | 0.522368 | 1_4:-56027403 | Msa0171330:CDS |
| CGGTAGTCGATCAAGGCAAA+TGG | 0.523052 | 1_4:-56028019 | Msa0171330:intron |
| GACACTTTGGAGAGTCTCAA+AGG | 0.530501 | 1_4:-56025806 | Msa0171330:three_prime_UTR |
| AAGAGGTTACGTACCCTAGC+AGG | 0.533358 | 1_4:+56029519 | None:intergenic |
| ATCAACCAGCTTGTTTGCGA+TGG | 0.533527 | 1_4:-56028276 | Msa0171330:CDS |
| GTTTATATGTAATCTTTCCA+GGG | 0.534679 | 1_4:-56029299 | Msa0171330:CDS |
| AACTGCCATCGCAAACAAGC+TGG | 0.536102 | 1_4:+56028271 | None:intergenic |
| TTAAAGATAAGAGAGAGAGT+TGG | 0.539047 | 1_4:+56029759 | None:intergenic |
| TCTCAAAGGGCATCATGGTA+TGG | 0.542653 | 1_4:-56025792 | Msa0171330:three_prime_UTR |
| GGTTAAGGAGGATAAATGTT+GGG | 0.545766 | 1_4:-56025970 | Msa0171330:CDS |
| GGAAATAAAATAAGAGAATG+TGG | 0.546599 | 1_4:-56025723 | Msa0171330:three_prime_UTR |
| CAATTGAGACAAAGACACTT+TGG | 0.546829 | 1_4:-56025819 | Msa0171330:three_prime_UTR |
| CCTTTATGGATGTCGAAGAA+TGG | 0.547576 | 1_4:-56028893 | Msa0171330:CDS |
| TCATGGTATGGTTCAGTCAG+TGG | 0.550042 | 1_4:-56025780 | Msa0171330:three_prime_UTR |
| TTAATTATTTACCCGGTGCA+AGG | 0.552167 | 1_4:+56027391 | None:intergenic |
| GAGAGTCTCAAAGGGCATCA+TGG | 0.568772 | 1_4:-56025797 | Msa0171330:three_prime_UTR |
| ACACTTTGGAGAGTCTCAAA+GGG | 0.568974 | 1_4:-56025805 | Msa0171330:three_prime_UTR |
| TATCAAGTCATCACCTGCTA+GGG | 0.571345 | 1_4:-56029532 | Msa0171330:intron |
| GCACAGCTCCTCCTTGCACC+GGG | 0.572784 | 1_4:-56027402 | Msa0171330:intron |
| TAGAAGCAGTGCAGGCCTAG+TGG | 0.573391 | 1_4:-56028971 | Msa0171330:CDS |
| GAAAGATTTAGTCGACAAGA+TGG | 0.580046 | 1_4:-56028237 | Msa0171330:CDS |
| GCATATCTAGTCCCCAAGCA+TGG | 0.583490 | 1_4:+56027128 | None:intergenic |
| ATGATGGAAATGTCAACGAA+TGG | 0.583894 | 1_4:-56028079 | Msa0171330:CDS |
| ATTGATGGTAAAGGCTGTGA+TGG | 0.584608 | 1_4:-56027430 | Msa0171330:CDS |
| GGTAAGGAGACTTTCTTACA+AGG | 0.584746 | 1_4:-56026027 | Msa0171330:CDS |
| GATGACTTGATATCTGGCAT+TGG | 0.586247 | 1_4:+56029543 | None:intergenic |
| TTTATATGTAATCTTTCCAG+GGG | 0.591637 | 1_4:-56029298 | Msa0171330:CDS |
| TTATCTGTGCCTCCAAGAGT+GGG | 0.596556 | 1_4:+56026714 | None:intergenic |
| AGAGAGAGTTGGTTGACGAA+AGG | 0.597733 | 1_4:+56029770 | None:intergenic |
| AAATTACCGCACGTGGTAGG+AGG | 0.599371 | 1_4:-56027589 | Msa0171330:CDS |
| TTGGGTCAAGGCGGTTAAGG+AGG | 0.601086 | 1_4:-56025982 | Msa0171330:CDS |
| GTAGGAGGTCAAAAGTGCAC+AGG | 0.604453 | 1_4:-56027574 | Msa0171330:intron |
| GGAAGTGAAGCGTTACCTCA+GGG | 0.611369 | 1_4:-56028950 | Msa0171330:CDS |
| GGTATTGTACATACTTCTCA+GGG | 0.613026 | 1_4:+56027801 | None:intergenic |
| CTCCAAGGTCCTCATCCCAA+AGG | 0.618532 | 1_4:+56027837 | None:intergenic |
| CATCATCAAATTACCGCACG+TGG | 0.620146 | 1_4:-56027596 | Msa0171330:CDS |
| TGGGGACTAGATATGCAGCT+TGG | 0.623260 | 1_4:-56027121 | Msa0171330:CDS |
| ATACTCACAAAGCTACAAAG+AGG | 0.632222 | 1_4:-56029235 | Msa0171330:intron |
| ATCAAATTACCGCACGTGGT+AGG | 0.635282 | 1_4:-56027592 | Msa0171330:CDS |
| AACGACTTGATCCATGCTTG+GGG | 0.639244 | 1_4:-56027139 | Msa0171330:CDS |
| TGATGATGTCGTTCATATAG+CGG | 0.641214 | 1_4:-56028039 | Msa0171330:CDS |
| ATTATTTACCCGGTGCAAGG+AGG | 0.658449 | 1_4:+56027394 | None:intergenic |
| GCATACTTATGATAGATGCA+GGG | 0.660134 | 1_4:-56029087 | Msa0171330:intron |
| ATTGTAGTGAATAATGTACT+CGG | 0.667033 | 1_4:+56026740 | None:intergenic |
| GGAGCGGGAAGCGAAAATCA+CGG | 0.672264 | 1_4:+56029791 | None:intergenic |
| GGTAACGCTTCACTTCCACT+AGG | 0.692454 | 1_4:+56028956 | None:intergenic |
| GAGTTGGTTGACGAAAGGAG+CGG | 0.706326 | 1_4:+56029775 | None:intergenic |
| ATTGTACATACTTCTCAGGG+TGG | 0.711500 | 1_4:+56027804 | None:intergenic |
| GTACTCGAGACTATACCCTG+AGG | 0.801494 | 1_4:+56028935 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTATTTTTGATATTAT+AGG | - | chr1_4:56026016-56026035 | Msa0171330:CDS | 10.0% |
| !!! | TTTCTATTTTTGATATTATA+GGG | - | chr1_4:56026017-56026036 | Msa0171330:CDS | 10.0% |
| !! | AAAGATACATTACATAAATA+AGG | - | chr1_4:56025684-56025703 | Msa0171330:three_prime_UTR | 15.0% |
| !! | TAAGAATATATGAAGAAAAT+AGG | - | chr1_4:56025972-56025991 | Msa0171330:CDS | 15.0% |
| !!! | TTAATTTTCCAAAAACATTA+AGG | - | chr1_4:56027688-56027707 | Msa0171330:intron | 15.0% |
| !!! | TTTTTCCTTTATGATTTTAA+AGG | - | chr1_4:56027725-56027744 | Msa0171330:intron | 15.0% |
| !! | TATATATGATCATTATCATT+CGG | - | chr1_4:56028405-56028424 | Msa0171330:intron | 15.0% |
| !! | TAAAAAATTATATTCTGTGT+TGG | + | chr1_4:56029156-56029175 | None:intergenic | 15.0% |
| !!! | TATCACATTTTTATTCAATA+AGG | - | chr1_4:56029663-56029682 | Msa0171330:intron | 15.0% |
| !! | TAACGTAATTCAAATTCATA+AGG | + | chr1_4:56025728-56025747 | None:intergenic | 20.0% |
| !!! | GGAATCAAAATTTTTGTTAT+AGG | - | chr1_4:56025993-56026012 | Msa0171330:CDS | 20.0% |
| !! | TGTTCTTTCAAATTTCTAAA+TGG | - | chr1_4:56026241-56026260 | Msa0171330:intron | 20.0% |
| !!! | TTGTTTTCTCTTAATACTTT+TGG | - | chr1_4:56026353-56026372 | Msa0171330:intron | 20.0% |
| !!! | AGTGATGAAGATTTTAAATA+TGG | + | chr1_4:56026978-56026997 | None:intergenic | 20.0% |
| !! | GATATTCAAAAATTGGATAT+GGG | + | chr1_4:56027466-56027485 | None:intergenic | 20.0% |
| !! | TGATATTCAAAAATTGGATA+TGG | + | chr1_4:56027467-56027486 | None:intergenic | 20.0% |
| !! | GATAAGTGATATTCAAAAAT+TGG | + | chr1_4:56027473-56027492 | None:intergenic | 20.0% |
| !!! | AGTATGATTATATTTTCCTT+TGG | - | chr1_4:56027563-56027582 | Msa0171330:intron | 20.0% |
| !!! | GTATGATTATATTTTCCTTT+GGG | - | chr1_4:56027564-56027583 | Msa0171330:intron | 20.0% |
| !! | AATCACAATCATATAAAGTT+TGG | - | chr1_4:56027653-56027672 | Msa0171330:CDS | 20.0% |
| !!! | ACATACCTTTAAAATCATAA+AGG | + | chr1_4:56027733-56027752 | None:intergenic | 20.0% |
| !! | CCAAAAATTAATTATTTACC+CGG | + | chr1_4:56028035-56028054 | None:intergenic | 20.0% |
| !! | TTGTTTATGTATGATCAATA+GGG | - | chr1_4:56028621-56028640 | Msa0171330:intron | 20.0% |
| !! | AATGAAATGAATATTGAATG+AGG | + | chr1_4:56028994-56029013 | None:intergenic | 20.0% |
| !!! | GTGTGACTAATATATTATTT+TGG | - | chr1_4:56029356-56029375 | Msa0171330:CDS | 20.0% |
| !!! | TGACTAATATATTATTTTGG+AGG | - | chr1_4:56029359-56029378 | Msa0171330:CDS | 20.0% |
| !!! | GACTAATATATTATTTTGGA+GGG | - | chr1_4:56029360-56029379 | Msa0171330:CDS | 20.0% |
| !!! | ACTAATATATTATTTTGGAG+GGG | - | chr1_4:56029361-56029380 | Msa0171330:CDS | 20.0% |
| !!! | TAGATATTTTCAAAAAACGT+TGG | - | chr1_4:56029415-56029434 | Msa0171330:intron | 20.0% |
| !!! | AGATATTTTCAAAAAACGTT+GGG | - | chr1_4:56029416-56029435 | Msa0171330:intron | 20.0% |
| !!! | CATTTTTATTCAATAAGGTT+TGG | - | chr1_4:56029668-56029687 | Msa0171330:intron | 20.0% |
| ! | AGACGGTTATAAAAATTGAA+AGG | + | chr1_4:56025931-56025950 | None:intergenic | 25.0% |
| ! | TTCATTGCATAATAACAAGA+CGG | + | chr1_4:56025948-56025967 | None:intergenic | 25.0% |
| ! | TGTTTATATGTAATCTTTCC+AGG | - | chr1_4:56026116-56026135 | Msa0171330:intron | 25.0% |
| ! | GTTTATATGTAATCTTTCCA+GGG | - | chr1_4:56026117-56026136 | Msa0171330:intron | 25.0% |
| ! | TTTATATGTAATCTTTCCAG+GGG | - | chr1_4:56026118-56026137 | Msa0171330:intron | 25.0% |
| !! | GAAAGAACACAAATTTTACT+CGG | + | chr1_4:56026230-56026249 | None:intergenic | 25.0% |
| ! | CTTTCAAATTTCTAAATGGT+TGG | - | chr1_4:56026245-56026264 | Msa0171330:intron | 25.0% |
| ! | AAACTATCAAGCTTCAAAAA+TGG | - | chr1_4:56026291-56026310 | Msa0171330:intron | 25.0% |
| !!! | GTGTATTATTTTGGATGTTT+AGG | - | chr1_4:56026391-56026410 | Msa0171330:intron | 25.0% |
| !!! | TTATTTTGGATGTTTAGGTT+TGG | - | chr1_4:56026396-56026415 | Msa0171330:intron | 25.0% |
| !!! | TCTAAGAAGTTTTTTCTTCA+TGG | + | chr1_4:56026617-56026636 | None:intergenic | 25.0% |
| !! | TGTTATTTGTGTTTCTTCTT+TGG | - | chr1_4:56026667-56026686 | Msa0171330:intron | 25.0% |
| ! | ATCTTCATCACTATAACATA+TGG | - | chr1_4:56026986-56027005 | Msa0171330:intron | 25.0% |
| ! | TGGACAAAAAAACTCTTTAA+AGG | + | chr1_4:56027215-56027234 | None:intergenic | 25.0% |
| ! | AGTATCAGTAATGAGAAATT+TGG | + | chr1_4:56027235-56027254 | None:intergenic | 25.0% |
| ! | TTTGGAAAATTAAAATCCGA+TGG | + | chr1_4:56027681-56027700 | None:intergenic | 25.0% |
| !! | ACACTAATCCTTAATGTTTT+TGG | + | chr1_4:56027699-56027718 | None:intergenic | 25.0% |
| ! | TTTCTATTGTCAAAGAAGAA+GGG | - | chr1_4:56027752-56027771 | Msa0171330:intron | 25.0% |
| !! | ACATTTAAAGCTGTTATTGA+TGG | - | chr1_4:56027971-56027990 | Msa0171330:intron | 25.0% |
| !! | CCGGGTAAATAATTAATTTT+TGG | - | chr1_4:56028032-56028051 | Msa0171330:CDS | 25.0% |
| ! | CTTCAACTGCATAAAATTAA+GGG | + | chr1_4:56028081-56028100 | None:intergenic | 25.0% |
| ! | TCTTCAACTGCATAAAATTA+AGG | + | chr1_4:56028082-56028101 | None:intergenic | 25.0% |
| !!! | ATGAACTAATTTGTTTCAGA+TGG | - | chr1_4:56028105-56028124 | Msa0171330:CDS | 25.0% |
| !! | ACATTTTTGTTCATCATTTG+CGG | - | chr1_4:56028242-56028261 | Msa0171330:CDS | 25.0% |
| ! | AACGAATAACTATTGTGTAA+CGG | - | chr1_4:56028545-56028564 | Msa0171330:intron | 25.0% |
| ! | CTATTGATCATACATAAACA+AGG | + | chr1_4:56028622-56028641 | None:intergenic | 25.0% |
| ! | CTTGTTTATGTATGATCAAT+AGG | - | chr1_4:56028620-56028639 | Msa0171330:intron | 25.0% |
| ! | ATTGTAGTGAATAATGTACT+CGG | + | chr1_4:56028679-56028698 | None:intergenic | 25.0% |
| !! | ATGAATGTCCTTTTATCTTA+GGG | + | chr1_4:56028942-56028961 | None:intergenic | 25.0% |
| !! | AATGAATGTCCTTTTATCTT+AGG | + | chr1_4:56028943-56028962 | None:intergenic | 25.0% |
| !! | AGATAAAAGGACATTCATTT+TGG | - | chr1_4:56028944-56028963 | Msa0171330:CDS | 25.0% |
| !! | TTTGAAAAAACTTGTCCTTT+TGG | - | chr1_4:56029052-56029071 | Msa0171330:intron | 25.0% |
| !! | TTGAAAAAACTTGTCCTTTT+GGG | - | chr1_4:56029053-56029072 | Msa0171330:intron | 25.0% |
| !!! | CTATTAGTCATTTTCATTGA+GGG | + | chr1_4:56029201-56029220 | None:intergenic | 25.0% |
| ! | TTGAAGAAGAATCTCAAATA+TGG | + | chr1_4:56029240-56029259 | None:intergenic | 25.0% |
| !!! | CTAATATATTATTTTGGAGG+GGG | - | chr1_4:56029362-56029381 | Msa0171330:CDS | 25.0% |
| !! | TTTTATTCAATAAGGTTTGG+AGG | - | chr1_4:56029671-56029690 | Msa0171330:intron | 25.0% |
| ! | TTTATTCAATAAGGTTTGGA+GGG | - | chr1_4:56029672-56029691 | Msa0171330:intron | 25.0% |
| ! | GGAAATAAAATAAGAGAATG+TGG | - | chr1_4:56029693-56029712 | Msa0171330:intron | 25.0% |
| ! | TTCTTGAGAAAACTTCTTTA+AGG | - | chr1_4:56029765-56029784 | Msa0171330:five_prime_UTR | 25.0% |
| TTAAAGATAAGAGAGAGAGT+TGG | + | chr1_4:56025660-56025679 | None:intergenic | 30.0% | |
| ATTGAAAGGAAGAAAAGAAG+AGG | + | chr1_4:56025917-56025936 | None:intergenic | 30.0% | |
| GCTTCAAAACACAAAATTCA+AGG | + | chr1_4:56026061-56026080 | None:intergenic | 30.0% | |
| !!! | ATTTTGTGTTTTGAAGCAGA+CGG | - | chr1_4:56026064-56026083 | Msa0171330:intron | 30.0% |
| ACAATAGACAGAAATTTGAG+TGG | + | chr1_4:56026589-56026608 | None:intergenic | 30.0% | |
| TTCTTAGAGTAGTTAGTGTA+AGG | - | chr1_4:56026629-56026648 | Msa0171330:intron | 30.0% | |
| TTTCAGTCAAGATTTGTACT+TGG | - | chr1_4:56026774-56026793 | Msa0171330:CDS | 30.0% | |
| TTTCTGAGTGAACAATGTAA+AGG | - | chr1_4:56026833-56026852 | Msa0171330:intron | 30.0% | |
| AACAATGTAAAGGTGACATA+TGG | - | chr1_4:56026843-56026862 | Msa0171330:intron | 30.0% | |
| ACGAATGGAAGAAATTCAAA+TGG | - | chr1_4:56027352-56027371 | Msa0171330:intron | 30.0% | |
| TCAAAAATTGGATATGGGAA+TGG | + | chr1_4:56027461-56027480 | None:intergenic | 30.0% | |
| !!! | TTATATTTTCCTTTGGGATG+AGG | - | chr1_4:56027570-56027589 | Msa0171330:intron | 30.0% |
| GTGATTACGCAAAACTAAAA+AGG | + | chr1_4:56027639-56027658 | None:intergenic | 30.0% | |
| ! | CATATAAAGTTTGGTTCCAT+CGG | - | chr1_4:56027662-56027681 | Msa0171330:CDS | 30.0% |
| GTTTCTATTGTCAAAGAAGA+AGG | - | chr1_4:56027751-56027770 | Msa0171330:intron | 30.0% | |
| CAGATACAGAAATGCAATTA+TGG | + | chr1_4:56027872-56027891 | None:intergenic | 30.0% | |
| ! | AAAGCTGTTATTGATGGTAA+AGG | - | chr1_4:56027977-56027996 | Msa0171330:intron | 30.0% |
| TTTCAGATGGATAGAAATGA+TGG | - | chr1_4:56028118-56028137 | Msa0171330:CDS | 30.0% | |
| ! | ATTTTGCTTTCAGTTTCATC+TGG | - | chr1_4:56028484-56028503 | Msa0171330:intron | 30.0% |
| ! | TTTTGCTTTCAGTTTCATCT+GGG | - | chr1_4:56028485-56028504 | Msa0171330:intron | 30.0% |
| ! | TAAAAGGACATTCATTTTGG+TGG | - | chr1_4:56028947-56028966 | Msa0171330:CDS | 30.0% |
| ! | AGGATGAGTACTAGTATTTT+TGG | + | chr1_4:56028974-56028993 | None:intergenic | 30.0% |
| !! | TTATATTCTGTGTTGGCTAA+TGG | + | chr1_4:56029149-56029168 | None:intergenic | 30.0% |
| !! | GCTATTAGTCATTTTCATTG+AGG | + | chr1_4:56029202-56029221 | None:intergenic | 30.0% |
| TCTCAAATATGGAAGCTAAT+TGG | + | chr1_4:56029229-56029248 | None:intergenic | 30.0% | |
| !! | ACAAATAATAAAAGTGCCCC+TGG | + | chr1_4:56026137-56026156 | None:intergenic | 35.0% |
| ATACTCACAAAGCTACAAAG+AGG | - | chr1_4:56026181-56026200 | Msa0171330:intron | 35.0% | |
| TCAAGCTTCAAAAATGGTGT+AGG | - | chr1_4:56026297-56026316 | Msa0171330:intron | 35.0% | |
| TGCATACTTATGATAGATGC+AGG | - | chr1_4:56026328-56026347 | Msa0171330:intron | 35.0% | |
| GCATACTTATGATAGATGCA+GGG | - | chr1_4:56026329-56026348 | Msa0171330:intron | 35.0% | |
| ! | CTCGTGATCGTGTATTATTT+TGG | - | chr1_4:56026382-56026401 | Msa0171330:intron | 35.0% |
| ACAGAAATTTGAGTGGTGAA+GGG | + | chr1_4:56026582-56026601 | None:intergenic | 35.0% | |
| TGACTGAAAGAATCCTTGAT+CGG | + | chr1_4:56026763-56026782 | None:intergenic | 35.0% | |
| AAAGGTGACATATGGTTGTA+AGG | - | chr1_4:56026851-56026870 | Msa0171330:intron | 35.0% | |
| AAGGTGACATATGGTTGTAA+GGG | - | chr1_4:56026852-56026871 | Msa0171330:intron | 35.0% | |
| TCCTTATGTATCTGCAATTG+TGG | - | chr1_4:56026925-56026944 | Msa0171330:intron | 35.0% | |
| ACCACAATTGCAGATACATA+AGG | + | chr1_4:56026929-56026948 | None:intergenic | 35.0% | |
| AATTGTGGTTGCAAAAGTCA+AGG | - | chr1_4:56026940-56026959 | Msa0171330:intron | 35.0% | |
| CTAATTGCTTACATTTGAGC+AGG | - | chr1_4:56027104-56027123 | Msa0171330:intron | 35.0% | |
| GAAAGATTTAGTCGACAAGA+TGG | - | chr1_4:56027179-56027198 | Msa0171330:intron | 35.0% | |
| CTGATACTCTGTTTAATCCA+TGG | - | chr1_4:56027247-56027266 | Msa0171330:intron | 35.0% | |
| CTGCAATTTGTGTAGAAAGA+GGG | + | chr1_4:56027280-56027299 | None:intergenic | 35.0% | |
| ACTGCAATTTGTGTAGAAAG+AGG | + | chr1_4:56027281-56027300 | None:intergenic | 35.0% | |
| ! | ATGATGGAAATGTCAACGAA+TGG | - | chr1_4:56027337-56027356 | Msa0171330:intron | 35.0% |
| ! | TGATGATGTCGTTCATATAG+CGG | - | chr1_4:56027377-56027396 | Msa0171330:intron | 35.0% |
| TGTGAAAACTGAAATCACTC+AGG | + | chr1_4:56027436-56027455 | None:intergenic | 35.0% | |
| !! | TGAGCTTGTTTTCAATGACT+AGG | - | chr1_4:56027500-56027519 | Msa0171330:intron | 35.0% |
| ATCATACTCAGCAACTATGT+CGG | + | chr1_4:56027551-56027570 | None:intergenic | 35.0% | |
| GGTATTGTACATACTTCTCA+GGG | + | chr1_4:56027618-56027637 | None:intergenic | 35.0% | |
| ! | AGGTATTGTACATACTTCTC+AGG | + | chr1_4:56027619-56027638 | None:intergenic | 35.0% |
| AGCACTTGATCCTAAAAAGT+CGG | - | chr1_4:56027792-56027811 | Msa0171330:intron | 35.0% | |
| ! | TGATGAACTTCCGACTTTTT+AGG | + | chr1_4:56027805-56027824 | None:intergenic | 35.0% |
| TTCGATAGTACTCACATCTA+TGG | - | chr1_4:56027917-56027936 | Msa0171330:intron | 35.0% | |
| TTAATTATTTACCCGGTGCA+AGG | + | chr1_4:56028028-56028047 | None:intergenic | 35.0% | |
| TTGGCAATGACAATTCAATG+TGG | - | chr1_4:56028051-56028070 | Msa0171330:CDS | 35.0% | |
| ! | ATCGCACTGATGAAACAAAA+TGG | + | chr1_4:56028199-56028218 | None:intergenic | 35.0% |
| TTTGCTTTCAGTTTCATCTG+GGG | - | chr1_4:56028486-56028505 | Msa0171330:intron | 35.0% | |
| !! | GTCAGAAGTTTTGTCAATCA+TGG | + | chr1_4:56028600-56028619 | None:intergenic | 35.0% |
| GGTGATCGAACAAAAAATGT+TGG | - | chr1_4:56028642-56028661 | Msa0171330:intron | 35.0% | |
| ! | TAAACTGTTACTTGCATTGC+AGG | - | chr1_4:56028825-56028844 | Msa0171330:intron | 35.0% |
| TTCAGATTCATCTCAGGAAA+AGG | - | chr1_4:56028849-56028868 | Msa0171330:intron | 35.0% | |
| CTGAATGTCCCTAAGATAAA+AGG | - | chr1_4:56028931-56028950 | Msa0171330:CDS | 35.0% | |
| ! | AAAAAACTTGTCCTTTTGGG+TGG | - | chr1_4:56029056-56029075 | Msa0171330:intron | 35.0% |
| TTTCAAAAAACGTTGGGTCA+AGG | - | chr1_4:56029422-56029441 | Msa0171330:intron | 35.0% | |
| GGTTAAGGAGGATAAATGTT+GGG | - | chr1_4:56029446-56029465 | Msa0171330:intron | 35.0% | |
| ! | TGCACATGTTGCTATTGAAA+TGG | + | chr1_4:56029477-56029496 | None:intergenic | 35.0% |
| CAATTGAGACAAAGACACTT+TGG | - | chr1_4:56029597-56029616 | Msa0171330:intron | 35.0% | |
| GATGACTTGATATCTGGCAT+TGG | + | chr1_4:56025876-56025895 | None:intergenic | 40.0% | |
| ATATCAAGTCATCACCTGCT+AGG | - | chr1_4:56025883-56025902 | Msa0171330:three_prime_UTR | 40.0% | |
| TATCAAGTCATCACCTGCTA+GGG | - | chr1_4:56025884-56025903 | Msa0171330:three_prime_UTR | 40.0% | |
| !!! | TGTTTTGAAGCAGACGGTTT+TGG | - | chr1_4:56026070-56026089 | Msa0171330:intron | 40.0% |
| TTGTTTAGTAGAAGCAGTGC+AGG | - | chr1_4:56026437-56026456 | Msa0171330:intron | 40.0% | |
| CCATTCTTCGACATCCATAA+AGG | + | chr1_4:56026526-56026545 | None:intergenic | 40.0% | |
| CCTTTATGGATGTCGAAGAA+TGG | - | chr1_4:56026523-56026542 | Msa0171330:intron | 40.0% | |
| GACAGAAATTTGAGTGGTGA+AGG | + | chr1_4:56026583-56026602 | None:intergenic | 40.0% | |
| TGTCATGGTTCCTTTCTCTT+GGG | + | chr1_4:56026709-56026728 | None:intergenic | 40.0% | |
| TTGTCATGGTTCCTTTCTCT+TGG | + | chr1_4:56026710-56026729 | None:intergenic | 40.0% | |
| AGGCAAACTTCAGATTGTCA+TGG | + | chr1_4:56026724-56026743 | None:intergenic | 40.0% | |
| ! | CAATCTGAAGTTTGCCTGAA+AGG | - | chr1_4:56026727-56026746 | Msa0171330:CDS | 40.0% |
| TCGGACTTTACTTACCTTTC+AGG | + | chr1_4:56026744-56026763 | None:intergenic | 40.0% | |
| AGGTAAGTAAAGTCCGATCA+AGG | - | chr1_4:56026747-56026766 | Msa0171330:CDS | 40.0% | |
| ! | ATGTTCTGCGACTCTGATTT+TGG | - | chr1_4:56026884-56026903 | Msa0171330:intron | 40.0% |
| GCTTACATTTGAGCAGGTTA+AGG | - | chr1_4:56027110-56027129 | Msa0171330:CDS | 40.0% | |
| AGTCGACAAGATGGTCAAAA+AGG | - | chr1_4:56027188-56027207 | Msa0171330:intron | 40.0% | |
| CGTTGACATTTCCATCATAG+TGG | + | chr1_4:56027335-56027354 | None:intergenic | 40.0% | |
| !! | GCTTGTTTTCAATGACTAGG+TGG | - | chr1_4:56027503-56027522 | Msa0171330:intron | 40.0% |
| TCATACTCAGCAACTATGTC+GGG | + | chr1_4:56027550-56027569 | None:intergenic | 40.0% | |
| ATTGTACATACTTCTCAGGG+TGG | + | chr1_4:56027615-56027634 | None:intergenic | 40.0% | |
| !!! | GACTTTTTAGGATCAAGTGC+TGG | + | chr1_4:56027793-56027812 | None:intergenic | 40.0% |
| ! | ATACTTTTCGTTGTGCTCAC+AGG | - | chr1_4:56027945-56027964 | Msa0171330:intron | 40.0% |
| ! | ATTGATGGTAAAGGCTGTGA+TGG | - | chr1_4:56027986-56028005 | Msa0171330:intron | 40.0% |
| TTGTGTCTGGTACATGATTC+AGG | - | chr1_4:56028169-56028188 | Msa0171330:intron | 40.0% | |
| ! | CATCTGGGGTTGTTAAATAG+CGG | - | chr1_4:56028500-56028519 | Msa0171330:intron | 40.0% |
| CTATTGCACCAAACTCTAGA+AGG | + | chr1_4:56029126-56029145 | None:intergenic | 40.0% | |
| GGTAAGGAGACTTTCTTACA+AGG | - | chr1_4:56029389-56029408 | Msa0171330:intron | 40.0% | |
| CGGTTAAGGAGGATAAATGT+TGG | - | chr1_4:56029445-56029464 | Msa0171330:intron | 40.0% | |
| ! | ACACTTTGGAGAGTCTCAAA+GGG | - | chr1_4:56029611-56029630 | Msa0171330:intron | 40.0% |
| ! | AGAGAGAGTTGGTTGACGAA+AGG | + | chr1_4:56025649-56025668 | None:intergenic | 45.0% |
| GCAGGTGATGACTTGATATC+TGG | + | chr1_4:56025882-56025901 | None:intergenic | 45.0% | |
| ! | AGTCTCGAGTACTTCGAGTT+TGG | - | chr1_4:56026492-56026511 | Msa0171330:intron | 45.0% |
| ! | GTTTGGAGCTGAGACCTTTA+TGG | - | chr1_4:56026509-56026528 | Msa0171330:intron | 45.0% |
| ATCGCAAACAAGCTGGTTGA+TGG | + | chr1_4:56027141-56027160 | None:intergenic | 45.0% | |
| ! | ATCAACCAGCTTGTTTGCGA+TGG | - | chr1_4:56027140-56027159 | Msa0171330:CDS | 45.0% |
| AGAAAGAGGGTCATGATCCA+TGG | + | chr1_4:56027267-56027286 | None:intergenic | 45.0% | |
| ! | GTGACGCTTTTCCACTATGA+TGG | - | chr1_4:56027321-56027340 | Msa0171330:intron | 45.0% |
| CATATAGCGGTAGTCGATCA+AGG | - | chr1_4:56027390-56027409 | Msa0171330:intron | 45.0% | |
| ! | GGTGGAAGTTTTCTACTCCA+AGG | + | chr1_4:56027597-56027616 | None:intergenic | 45.0% |
| CATCATCAAATTACCGCACG+TGG | - | chr1_4:56027820-56027839 | Msa0171330:CDS | 45.0% | |
| ATCAAATTACCGCACGTGGT+AGG | - | chr1_4:56027824-56027843 | Msa0171330:CDS | 45.0% | |
| ATTATTTACCCGGTGCAAGG+AGG | + | chr1_4:56028025-56028044 | None:intergenic | 45.0% | |
| AGAACGACTTGATCCATGCT+TGG | - | chr1_4:56028275-56028294 | Msa0171330:CDS | 45.0% | |
| GAACGACTTGATCCATGCTT+GGG | - | chr1_4:56028276-56028295 | Msa0171330:CDS | 45.0% | |
| AACGACTTGATCCATGCTTG+GGG | - | chr1_4:56028277-56028296 | Msa0171330:CDS | 45.0% | |
| TTATCTGTGCCTCCAAGAGT+GGG | + | chr1_4:56028705-56028724 | None:intergenic | 45.0% | |
| GCAGGTTTCAGATTCATCTC+AGG | - | chr1_4:56028843-56028862 | Msa0171330:intron | 45.0% | |
| !! | TTCCTGCACCTTCTAGAGTT+TGG | - | chr1_4:56029115-56029134 | Msa0171330:CDS | 45.0% |
| !!! | TATTATTTTGGAGGGGGTGC+AGG | - | chr1_4:56029368-56029387 | Msa0171330:CDS | 45.0% |
| CAAAAAACGTTGGGTCAAGG+CGG | - | chr1_4:56029425-56029444 | Msa0171330:intron | 45.0% | |
| ! | GACACTTTGGAGAGTCTCAA+AGG | - | chr1_4:56029610-56029629 | Msa0171330:intron | 45.0% |
| !! | TCTCAAAGGGCATCATGGTA+TGG | - | chr1_4:56029624-56029643 | Msa0171330:intron | 45.0% |
| TCATGGTATGGTTCAGTCAG+TGG | - | chr1_4:56029636-56029655 | Msa0171330:intron | 45.0% | |
| AGTTGGTTGACGAAAGGAGC+GGG | + | chr1_4:56025643-56025662 | None:intergenic | 50.0% | |
| ! | GAGTTGGTTGACGAAAGGAG+CGG | + | chr1_4:56025644-56025663 | None:intergenic | 50.0% |
| AAGAGGTTACGTACCCTAGC+AGG | + | chr1_4:56025900-56025919 | None:intergenic | 50.0% | |
| GGTAACGCTTCACTTCCACT+AGG | + | chr1_4:56026463-56026482 | None:intergenic | 50.0% | |
| ! | TGGAAGTGAAGCGTTACCTC+AGG | - | chr1_4:56026465-56026484 | Msa0171330:intron | 50.0% |
| ! | GGAAGTGAAGCGTTACCTCA+GGG | - | chr1_4:56026466-56026485 | Msa0171330:intron | 50.0% |
| GTACTCGAGACTATACCCTG+AGG | + | chr1_4:56026484-56026503 | None:intergenic | 50.0% | |
| CTTCTTTGGTCGTAACCCTC+CGG | - | chr1_4:56026681-56026700 | Msa0171330:intron | 50.0% | |
| GGTTCCTTTCTCTTGGGAAC+CGG | + | chr1_4:56026703-56026722 | None:intergenic | 50.0% | |
| AACTGCCATCGCAAACAAGC+TGG | + | chr1_4:56027148-56027167 | None:intergenic | 50.0% | |
| ! | AGCTTGTTTGCGATGGCAGT+TGG | - | chr1_4:56027147-56027166 | Msa0171330:intron | 50.0% |
| CGGTAGTCGATCAAGGCAAA+TGG | - | chr1_4:56027397-56027416 | Msa0171330:intron | 50.0% | |
| !! | TTCCTTTGGGATGAGGACCT+TGG | - | chr1_4:56027577-56027596 | Msa0171330:CDS | 50.0% |
| AAATTACCGCACGTGGTAGG+AGG | - | chr1_4:56027827-56027846 | Msa0171330:CDS | 50.0% | |
| ! | TTTTGACCTCCTACCACGTG+CGG | + | chr1_4:56027836-56027855 | None:intergenic | 50.0% |
| ! | GTAGGAGGTCAAAAGTGCAC+AGG | - | chr1_4:56027842-56027861 | Msa0171330:CDS | 50.0% |
| ! | CTTTTCGTTGTGCTCACAGG+AGG | - | chr1_4:56027948-56027967 | Msa0171330:intron | 50.0% |
| CACGCAGCTCTTGAGAAAAC+AGG | + | chr1_4:56028146-56028165 | None:intergenic | 50.0% | |
| ! | CTGTTTTCTCAAGAGCTGCG+TGG | - | chr1_4:56028144-56028163 | Msa0171330:intron | 50.0% |
| GCATATCTAGTCCCCAAGCA+TGG | + | chr1_4:56028291-56028310 | None:intergenic | 50.0% | |
| TGGGGACTAGATATGCAGCT+TGG | - | chr1_4:56028295-56028314 | Msa0171330:intron | 50.0% | |
| CACTACAATCGTCCCACTCT+TGG | - | chr1_4:56028690-56028709 | Msa0171330:intron | 50.0% | |
| TACAATCGTCCCACTCTTGG+AGG | - | chr1_4:56028693-56028712 | Msa0171330:intron | 50.0% | |
| GTTATCTGTGCCTCCAAGAG+TGG | + | chr1_4:56028706-56028725 | None:intergenic | 50.0% | |
| CTAAGCACAAGCCACCCAAA+AGG | + | chr1_4:56029070-56029089 | None:intergenic | 50.0% | |
| !! | CTTTTGGGTGGCTTGTGCTT+AGG | - | chr1_4:56029068-56029087 | Msa0171330:intron | 50.0% |
| ! | CACCAAACTCTAGAAGGTGC+AGG | + | chr1_4:56029120-56029139 | None:intergenic | 50.0% |
| !! | GAGAGTCTCAAAGGGCATCA+TGG | - | chr1_4:56029619-56029638 | Msa0171330:intron | 50.0% |
| GGAGCGGGAAGCGAAAATCA+CGG | + | chr1_4:56025628-56025647 | None:intergenic | 55.0% | |
| TAGAAGCAGTGCAGGCCTAG+TGG | - | chr1_4:56026445-56026464 | Msa0171330:intron | 55.0% | |
| CCTTTCTCTTGGGAACCGGA+GGG | + | chr1_4:56026699-56026718 | None:intergenic | 55.0% | |
| TCCTTTCTCTTGGGAACCGG+AGG | + | chr1_4:56026700-56026719 | None:intergenic | 55.0% | |
| CTCCAAGGTCCTCATCCCAA+AGG | + | chr1_4:56027582-56027601 | None:intergenic | 55.0% | |
| GCAGCTTGGCTACTGTTCTC+AGG | - | chr1_4:56028309-56028328 | Msa0171330:intron | 55.0% | |
| !! | TTTTGGAGGGGGTGCAGGTA+AGG | - | chr1_4:56029373-56029392 | Msa0171330:CDS | 55.0% |
| ACGTTGGGTCAAGGCGGTTA+AGG | - | chr1_4:56029431-56029450 | Msa0171330:intron | 55.0% | |
| TTGGGTCAAGGCGGTTAAGG+AGG | - | chr1_4:56029434-56029453 | Msa0171330:intron | 55.0% | |
| CCCTCCGGTTCCCAAGAGAA+AGG | - | chr1_4:56026696-56026715 | Msa0171330:intron | 60.0% | |
| AGCACAGCTCCTCCTTGCAC+CGG | - | chr1_4:56028013-56028032 | Msa0171330:intron | 60.0% | |
| GCACAGCTCCTCCTTGCACC+GGG | - | chr1_4:56028014-56028033 | Msa0171330:intron | 65.0% | |
| GAGCTGCGTGGCGTTGTGTC+TGG | - | chr1_4:56028156-56028175 | Msa0171330:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 56025598 | 56029840 | 56025598 | ID=Msa0171330;Name=Msa0171330 |
| chr1_4 | mRNA | 56025598 | 56029840 | 56025598 | ID=Msa0171330-mRNA-1;Parent=Msa0171330;Name=Msa0171330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=153|0.86|0.87|1|0.86|0.75|16|321|403 |
| chr1_4 | exon | 56025598 | 56025634 | 56025598 | ID=Msa0171330-mRNA-1:exon:16915;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56025669 | 56026048 | 56025669 | ID=Msa0171330-mRNA-1:exon:16914;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56026553 | 56026591 | 56026553 | ID=Msa0171330-mRNA-1:exon:16913;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56026704 | 56026796 | 56026704 | ID=Msa0171330-mRNA-1:exon:16912;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56027108 | 56027161 | 56027108 | ID=Msa0171330-mRNA-1:exon:16911;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56027248 | 56027314 | 56027248 | ID=Msa0171330-mRNA-1:exon:16910;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56027403 | 56027471 | 56027403 | ID=Msa0171330-mRNA-1:exon:16909;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56027575 | 56027691 | 56027575 | ID=Msa0171330-mRNA-1:exon:16908;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56027815 | 56027916 | 56027815 | ID=Msa0171330-mRNA-1:exon:16907;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56028020 | 56028138 | 56028020 | ID=Msa0171330-mRNA-1:exon:16906;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56028229 | 56028312 | 56028229 | ID=Msa0171330-mRNA-1:exon:16905;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56028874 | 56028990 | 56028874 | ID=Msa0171330-mRNA-1:exon:16904;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56029088 | 56029147 | 56029088 | ID=Msa0171330-mRNA-1:exon:16903;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56029236 | 56029400 | 56029236 | ID=Msa0171330-mRNA-1:exon:16902;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56029533 | 56029607 | 56029533 | ID=Msa0171330-mRNA-1:exon:16901;Parent=Msa0171330-mRNA-1 |
| chr1_4 | exon | 56029733 | 56029840 | 56029733 | ID=Msa0171330-mRNA-1:exon:16900;Parent=Msa0171330-mRNA-1 |
| chr1_4 | five_prime_UTR | 56029733 | 56029840 | 56029733 | ID=Msa0171330-mRNA-1:five_prime_utr;Parent=Msa0171330-mRNA-1 |
| chr1_4 | five_prime_UTR | 56029563 | 56029607 | 56029563 | ID=Msa0171330-mRNA-1:five_prime_utr;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56029533 | 56029562 | 56029533 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56029236 | 56029400 | 56029236 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56029088 | 56029147 | 56029088 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56028874 | 56028990 | 56028874 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56028229 | 56028312 | 56028229 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56028020 | 56028138 | 56028020 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56027815 | 56027916 | 56027815 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56027575 | 56027691 | 56027575 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56027403 | 56027471 | 56027403 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56027248 | 56027314 | 56027248 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56027108 | 56027161 | 56027108 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56026704 | 56026796 | 56026704 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56026553 | 56026591 | 56026553 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | CDS | 56025953 | 56026048 | 56025953 | ID=Msa0171330-mRNA-1:cds;Parent=Msa0171330-mRNA-1 |
| chr1_4 | three_prime_UTR | 56025669 | 56025952 | 56025669 | ID=Msa0171330-mRNA-1:three_prime_utr;Parent=Msa0171330-mRNA-1 |
| chr1_4 | three_prime_UTR | 56025598 | 56025634 | 56025598 | ID=Msa0171330-mRNA-1:three_prime_utr;Parent=Msa0171330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
