AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0298610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298610 MtrunA17_Chr2g0322361 95.200 750 35 1 1 749 1 750 0.0 1457
Msa0298610 MtrunA17_Chr2g0322371 86.533 750 90 4 1 749 1 740 0.0 1334
Msa0298610 MtrunA17_Chr4g0025201 58.311 746 301 6 1 744 1 738 0.0 883
Msa0298610 MtrunA17_Chr2g0322351 57.769 753 294 9 1 747 1 735 0.0 855
Msa0298610 MtrunA17_Chr2g0322341 64.368 348 118 4 1 346 3 346 1.41e-156 458
Msa0298610 MtrunA17_Chr3g0102531 34.487 751 449 14 1 737 1 722 4.77e-139 426
Msa0298610 MtrunA17_Chr4g0073711 34.901 808 434 20 1 739 228 1012 4.25e-136 427
Msa0298610 MtrunA17_Chr3g0102551 34.979 709 408 14 50 740 60 733 2.18e-134 415
Msa0298610 MtrunA17_Chr3g0102541 34.346 757 446 16 1 737 1 726 2.29e-134 414
Msa0298610 MtrunA17_Chr8g0379241 33.718 780 444 16 21 739 196 963 2.60e-132 416
Msa0298610 MtrunA17_Chr2g0284211 33.248 785 444 15 21 739 181 951 1.27e-131 414
Msa0298610 MtrunA17_Chr2g0322331 53.247 385 166 6 375 749 1 381 4.96e-131 394
Msa0298610 MtrunA17_Chr3g0137951 33.779 823 441 21 1 739 258 1060 1.88e-130 414
Msa0298610 MtrunA17_Chr1g0183381 33.249 794 460 18 1 739 100 878 8.59e-130 407
Msa0298610 MtrunA17_Chr8g0352231 33.377 764 422 14 52 739 300 1052 5.72e-128 407
Msa0298610 MtrunA17_Chr8g0364641 33.755 791 455 20 1 739 182 955 2.36e-127 403
Msa0298610 MtrunA17_Chr1g0201731 32.805 820 452 18 2 739 269 1071 1.38e-126 404
Msa0298610 MtrunA17_Chr5g0410641 30.549 874 453 26 8 747 252 1105 1.65e-110 361
Msa0298610 MtrunA17_Chr4g0046401 31.831 732 449 16 30 744 37 735 6.25e-109 348
Msa0298610 MtrunA17_Chr1g0186381 32.203 767 450 20 2 739 4 729 1.08e-108 347
Msa0298610 MtrunA17_Chr1g0165411 30.292 822 435 22 18 719 258 1061 1.84e-106 350
Msa0298610 MtrunA17_Chr2g0298581 31.337 718 449 16 16 723 8 691 3.15e-106 340
Msa0298610 MtrunA17_Chr1g0165421 30.660 848 435 26 8 719 259 1089 1.93e-105 348
Msa0298610 MtrunA17_Chr4g0039801 30.126 873 458 29 8 747 273 1126 2.97e-105 347
Msa0298610 MtrunA17_Chr2g0307191 30.812 714 448 15 16 718 8 686 2.08e-103 332
Msa0298610 MtrunA17_Chr3g0077511 30.435 667 423 12 16 672 8 643 6.66e-103 331
Msa0298610 MtrunA17_Chr2g0297351 29.201 839 452 22 8 719 159 982 7.39e-103 339
Msa0298610 MtrunA17_Chr7g0269741 29.621 871 452 24 8 738 297 1146 2.30e-102 340
Msa0298610 MtrunA17_Chr3g0095791 29.888 716 457 17 16 721 8 688 4.51e-102 328
Msa0298610 MtrunA17_Chr8g0383701 41.266 395 211 9 1 377 266 657 1.40e-85 293
Msa0298610 MtrunA17_Chr8g0383701 31.267 371 230 7 381 739 713 1070 3.15e-41 162
Msa0298610 MtrunA17_Chr2g0296991 41.414 396 215 7 1 380 199 593 3.21e-85 291
Msa0298610 MtrunA17_Chr2g0296991 30.056 356 227 8 391 739 678 1018 3.23e-39 156
Msa0298610 MtrunA17_Chr7g0274751 29.292 734 355 24 1 649 89 743 2.12e-84 285
Msa0298610 MtrunA17_Chr3g0088821 40.204 393 214 10 3 377 250 639 4.28e-84 288
Msa0298610 MtrunA17_Chr3g0088821 30.398 352 232 5 391 739 711 1052 3.10e-40 159
Msa0298610 MtrunA17_Chr3g0078671 40.657 396 214 10 1 378 215 607 2.39e-81 280
Msa0298610 MtrunA17_Chr3g0078671 29.917 361 238 7 391 745 679 1030 1.10e-37 151
Msa0298610 MtrunA17_Chr7g0267731 38.677 393 220 10 3 377 162 551 3.86e-80 276
Msa0298610 MtrunA17_Chr7g0267731 30.337 356 235 6 387 739 615 960 9.17e-42 164
Msa0298610 MtrunA17_Chr2g0307241 37.912 182 105 3 16 192 8 186 1.19e-32 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298610 AT2G32530.1 46.499 757 370 10 8 743 10 752 0.0 665
Msa0298610 AT2G32540.1 47.487 756 358 12 8 740 10 749 0.0 649
Msa0298610 AT4G15320.3 45.085 763 378 13 7 743 9 756 0.0 631
Msa0298610 AT4G15320.5 45.144 762 377 13 7 742 9 755 0.0 631
Msa0298610 AT4G15320.4 44.216 778 378 14 7 743 9 771 0.0 623
Msa0298610 AT2G32620.1 46.306 758 372 12 8 743 10 754 0.0 616
Msa0298610 AT2G32610.1 43.627 761 390 13 8 743 10 756 0.0 607
Msa0298610 AT4G15290.1 44.459 758 384 13 8 742 10 753 0.0 587
Msa0298610 AT2G32620.4 45.796 666 331 10 100 743 1 658 0.0 550
Msa0298610 AT2G32620.3 47.010 602 296 8 8 599 10 598 5.38e-180 528
Msa0298610 AT4G15320.2 42.241 696 317 12 7 646 9 675 3.50e-179 532
Msa0298610 AT4G15320.1 39.919 739 316 14 7 646 9 718 1.06e-170 512
Msa0298610 AT2G32620.2 49.136 521 239 8 8 516 10 516 2.40e-161 478
Msa0298610 AT5G17420.1 34.913 802 443 17 1 739 215 1000 7.22e-139 435
Msa0298610 AT5G09870.1 33.779 823 449 17 1 741 241 1049 1.77e-135 427
Msa0298610 AT5G05170.1 34.108 818 442 18 3 739 238 1039 8.52e-135 425
Msa0298610 AT4G18780.1 34.426 793 437 16 16 739 179 957 1.08e-134 423
Msa0298610 AT5G64740.1 33.333 822 457 17 1 741 253 1064 5.39e-134 424
Msa0298610 AT1G55850.1 36.571 700 389 15 50 737 64 720 5.97e-134 414
Msa0298610 AT4G32410.1 33.701 816 451 19 1 739 252 1054 1.45e-133 422
Msa0298610 AT2G25540.1 33.824 816 450 20 1 739 232 1034 6.22e-132 417
Msa0298610 AT2G21770.1 33.333 822 454 18 1 741 259 1067 6.94e-129 410
Msa0298610 AT4G23990.1 32.810 701 406 18 62 740 86 743 8.20e-111 354
Msa0298610 AT4G24000.1 33.195 723 419 18 35 739 37 713 1.37e-109 350
Msa0298610 AT4G24010.1 34.030 670 366 18 62 706 67 685 6.20e-108 346
Msa0298610 AT1G32180.1 31.010 832 425 25 25 720 123 941 2.92e-106 347
Msa0298610 AT1G32180.2 31.010 832 425 25 25 720 123 941 2.92e-106 347
Msa0298610 AT4G38190.1 30.024 826 447 23 8 719 256 1064 3.31e-103 342
Msa0298610 AT2G33100.2 29.286 840 456 20 8 719 167 996 6.84e-102 337
Msa0298610 AT2G33100.1 29.286 840 456 20 8 719 167 996 6.84e-102 337
Msa0298610 AT1G02730.1 29.680 876 452 25 8 738 302 1158 7.02e-102 339
Msa0298610 AT3G03050.1 30.486 843 438 25 8 719 278 1103 1.43e-101 338
Msa0298610 AT5G16910.1 29.489 841 446 24 8 719 281 1103 8.90e-97 325
Msa0298610 AT4G39350.1 41.162 396 212 9 1 378 254 646 7.07e-86 294
Msa0298610 AT4G39350.1 29.296 355 239 4 387 739 713 1057 5.99e-36 146
Msa0298610 AT5G44030.1 41.944 391 206 10 8 380 199 586 2.01e-84 289
Msa0298610 AT5G44030.1 30.137 365 235 8 381 739 673 1023 3.37e-38 153
Msa0298610 AT5G44030.2 41.944 391 206 10 8 380 228 615 2.39e-84 290
Msa0298610 AT5G44030.2 30.137 365 235 8 381 739 702 1052 2.42e-38 154
Msa0298610 AT5G44030.3 45.333 300 152 6 92 380 9 307 3.44e-75 259
Msa0298610 AT5G44030.3 30.137 365 235 8 381 739 394 744 1.28e-38 154
Msa0298610 AT4G24000.2 32.079 558 322 14 199 738 2 520 3.31e-73 248
Msa0298610 AT4G23990.2 31.162 568 325 16 199 740 2 529 4.06e-72 245

Find 144 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCAAAACTTAGCAAATT+TGG 0.129500 2_3:+52709863 None:intergenic
AGCACTTGTTGTTAAGATTT+TGG 0.131027 2_3:-52707234 Msa0298610:CDS
AAGGATTATCATTAAGATTT+TGG 0.147084 2_3:-52707484 Msa0298610:CDS
TCAACAAGTGTATGGTTTAT+TGG 0.197802 2_3:-52707431 Msa0298610:CDS
CTTCCAAATTTGCTAAGTTT+TGG 0.203327 2_3:-52709866 Msa0298610:CDS
CATCAGATGGGTTGGTTATA+TGG 0.220657 2_3:-52708108 Msa0298610:intron
GGAATTAAAGATGACCCTTT+TGG 0.230566 2_3:-52708918 Msa0298610:CDS
GTATTAGTCTTAAGATTTAA+TGG 0.234271 2_3:-52707002 Msa0298610:three_prime_UTR
AGCAAGCATTCTCCTGTTAT+AGG 0.236176 2_3:-52707916 Msa0298610:CDS
AACCATTCTTGTTTAAATTC+TGG 0.253368 2_3:+52709762 None:intergenic
CTTATTGTTGGCTTACCAAT+TGG 0.259289 2_3:-52707855 Msa0298610:CDS
AGTGCCATGCTTAAGCTCTT+AGG 0.270075 2_3:-52707401 Msa0298610:CDS
AAGATATTAATACAGCAATT+TGG 0.270520 2_3:-52708558 Msa0298610:CDS
TTGCTTTCTCATGTGAATCT+TGG 0.274164 2_3:-52710674 Msa0298610:CDS
TCTTTGGTAAAATCCAATTC+AGG 0.284230 2_3:-52707888 Msa0298610:CDS
TTGTTTGCTAGGGGTAAATA+TGG 0.302310 2_3:-52707113 Msa0298610:CDS
CTTTATGCAGTACATAATAA+AGG 0.304711 2_3:-52708791 Msa0298610:intron
TGTATCTAGTAGTATGTTAT+TGG 0.305072 2_3:-52707151 Msa0298610:CDS
AACAAAGAAGAGAAAATAAA+AGG 0.305339 2_3:+52710748 None:intergenic
CCGCATATTCTCCCTCAAAT+TGG 0.312179 2_3:+52709576 None:intergenic
GCTTGTTATGTTTCTGATGA+TGG 0.315570 2_3:-52709924 Msa0298610:CDS
AAGACGGTTTGGATATGTTT+TGG 0.323944 2_3:+52710599 None:intergenic
TATCCTGATGAAATTCAATA+TGG 0.325981 2_3:-52708694 Msa0298610:CDS
CCTGTTATAGGTACCCTCTT+TGG 0.329571 2_3:-52707904 Msa0298610:CDS
GGACTTCAAGGACCTTTCTA+TGG 0.332996 2_3:-52708760 Msa0298610:CDS
TTCTGGTGAATCTTCACTAT+TGG 0.337945 2_3:+52709779 None:intergenic
AAAGCGTTGACAGGTTATAT+TGG 0.339961 2_3:-52709303 Msa0298610:intron
TTATTGTTGGCTTACCAATT+GGG 0.340053 2_3:-52707854 Msa0298610:CDS
TCAGATTGTGGATATGAATA+TGG 0.340911 2_3:-52708429 Msa0298610:CDS
GGGCAGGCTTGTCTTATTGT+TGG 0.341388 2_3:-52707867 Msa0298610:CDS
AAGACAAGCCTGCCCTGAAT+TGG 0.353258 2_3:+52707875 None:intergenic
CAGTCTACGTTCAACATAAA+AGG 0.353647 2_3:+52709053 None:intergenic
TGCAATTAGCAGCTCATAAT+GGG 0.360054 2_3:-52707208 Msa0298610:CDS
TACCAATTGGGGTCTGCGTT+CGG 0.380901 2_3:-52707842 Msa0298610:CDS
GTGCAATTAGCAGCTCATAA+TGG 0.389585 2_3:-52707209 Msa0298610:CDS
CACCAGAATTTAAACAAGAA+TGG 0.390854 2_3:-52709764 Msa0298610:CDS
GCCTTCATGGGATGCGCTCC+CGG 0.398885 2_3:-52708003 Msa0298610:CDS
CATAGCATGTTGAATAATCT+TGG 0.402560 2_3:+52709010 None:intergenic
TGGCACTTGTTGGGGTAAAC+AGG 0.403166 2_3:-52708409 Msa0298610:intron
CATATCCACAATCTGATACT+TGG 0.404400 2_3:+52708436 None:intergenic
CTTCCATATTGAATTTCATC+AGG 0.404640 2_3:+52708691 None:intergenic
GATTGCTTTATCAAGAAGAT+TGG 0.407463 2_3:+52708458 None:intergenic
ACCGGAGCCAACAGCCTTCA+TGG 0.407960 2_3:-52708016 Msa0298610:CDS
CATAGAAGAAATGCTATATA+TGG 0.408572 2_3:-52708721 Msa0298610:CDS
TAATTCCATCATAAAATTGT+TGG 0.409034 2_3:+52708934 None:intergenic
TTCAACTTCATTCCAATTTG+AGG 0.413057 2_3:-52709588 Msa0298610:CDS
TTTATGCAGTACATAATAAA+GGG 0.413341 2_3:-52708790 Msa0298610:intron
CCCATGAAGGCTGTTGGCTC+CGG 0.414417 2_3:+52708015 None:intergenic
CCAAAGAGGGTACCTATAAC+AGG 0.415661 2_3:+52707904 None:intergenic
GTTGTGCCAGCCACAAAAGC+TGG 0.417563 2_3:+52707278 None:intergenic
TCTAACCTTAGGAAAGATAC+TGG 0.419948 2_3:+52707768 None:intergenic
AATCTTGGTTCACTTATACT+TGG 0.420205 2_3:-52710659 Msa0298610:CDS
GAAATTCAATATGGAAGAAA+AGG 0.424433 2_3:-52708685 Msa0298610:intron
AAGAAGTGCTGACTTGAAAA+TGG 0.427224 2_3:+52707076 None:intergenic
GACCGAACGCAGACCCCAAT+TGG 0.428493 2_3:+52707840 None:intergenic
TATTCCAGGGACTTGGGCTA+TGG 0.429398 2_3:-52707565 Msa0298610:intron
CAACAAAAGAGATGGTCTTC+AGG 0.429438 2_3:-52707958 Msa0298610:CDS
GTGCCATGCTTAAGCTCTTA+GGG 0.430274 2_3:-52707400 Msa0298610:CDS
GACTTGAAAATGGTAGATAA+TGG 0.432424 2_3:+52707086 None:intergenic
TCAACTTCATTCCAATTTGA+GGG 0.436853 2_3:-52709587 Msa0298610:CDS
TACCGTTGAAGAAGACGGTT+TGG 0.445224 2_3:+52710588 None:intergenic
TTGTAATTGTGTTCGTACTT+TGG 0.447431 2_3:+52709218 None:intergenic
TGAATATGCAAAGAAAAGGT+TGG 0.448456 2_3:-52708056 Msa0298610:CDS
GGGAGTGATAATTCAATTGA+TGG 0.450914 2_3:-52708492 Msa0298610:CDS
CAATAAGATCAACAAGTGTA+TGG 0.456139 2_3:-52707439 Msa0298610:CDS
AAATCATTCAAGTATAGTTA+AGG 0.459304 2_3:-52709531 Msa0298610:intron
TCAATGGGTGGCTTCATTTG+AGG 0.460948 2_3:-52708892 Msa0298610:intron
AAGGGCATGGGAGGACTTCA+AGG 0.461364 2_3:-52708772 Msa0298610:CDS
TTTATTTACTATTACTCCAT+TGG 0.461466 2_3:-52706931 Msa0298610:three_prime_UTR
GGTAACAGCAGGACTCCATT+TGG 0.463280 2_3:+52710620 None:intergenic
TGCTGATGGAGAAGAAAATA+CGG 0.467571 2_3:+52710724 None:intergenic
TTTGAAAGGGTTGTTTGCTA+GGG 0.474486 2_3:-52707123 Msa0298610:CDS
TTGTGGTTCTCAACACCAAA+TGG 0.475645 2_3:-52710635 Msa0298610:CDS
TGTCAATTGCACAAGCAAAA+TGG 0.479362 2_3:+52707256 None:intergenic
GCCACCCATTGATTTCCAAA+AGG 0.480343 2_3:+52708903 None:intergenic
TGTTTGCTAGGGGTAAATAT+GGG 0.481543 2_3:-52707112 Msa0298610:CDS
GATATGAATATGGCACTTGT+TGG 0.481660 2_3:-52708419 Msa0298610:CDS
CTACAAGAGTATCTATCAAA+AGG 0.485019 2_3:-52707503 Msa0298610:CDS
GTTCACTTATACTTGGATTG+TGG 0.488045 2_3:-52710652 Msa0298610:CDS
TTTGGAAACATCAGATGGGT+TGG 0.489093 2_3:-52708116 Msa0298610:intron
CAAAAGGAAAGTCCAACTTC+TGG 0.490074 2_3:-52707350 Msa0298610:CDS
CATTGTAGTGAGTAATCCTC+CGG 0.490307 2_3:+52707984 None:intergenic
GTGTTTGTTCCTCCATAGAA+AGG 0.493634 2_3:+52708748 None:intergenic
TAACAAGCTAGCTTATTAGC+TGG 0.493726 2_3:+52709939 None:intergenic
TACCAACACATTCATAGCTC+CGG 0.494183 2_3:+52709193 None:intergenic
GCTTTCTATCATCTGCAGAA+TGG 0.494608 2_3:-52710853 Msa0298610:exon
AATTTGTAGACAAGAGTCTC+AGG 0.495070 2_3:-52709092 Msa0298610:intron
CCACCCATTGATTTCCAAAA+GGG 0.496575 2_3:+52708904 None:intergenic
AGTCTTTGAAGTAACACAAA+AGG 0.498554 2_3:-52707366 Msa0298610:CDS
ATATCAGAAGATGTACCAAC+TGG 0.500267 2_3:-52708081 Msa0298610:CDS
CTTTGGTAAAATCCAATTCA+GGG 0.504422 2_3:-52707887 Msa0298610:CDS
TGATTATGCAATATGCAACT+AGG 0.506316 2_3:+52707797 None:intergenic
AACAATGATAGTCTTTCTGA+TGG 0.507865 2_3:-52709278 Msa0298610:CDS
TATTGTTGGCTTACCAATTG+GGG 0.508021 2_3:-52707853 Msa0298610:CDS
ATATGAATATGGCACTTGTT+GGG 0.515313 2_3:-52708418 Msa0298610:CDS
TCTTCAGCAGCACCAGAAGT+TGG 0.518813 2_3:+52707338 None:intergenic
GCAGTACATAATAAAGGGCA+TGG 0.521471 2_3:-52708785 Msa0298610:intron
ATATTATACTTCTTACAGAA+AGG 0.524444 2_3:+52709840 None:intergenic
TATAGCATTTCTTCTATGAA+AGG 0.525259 2_3:+52708726 None:intergenic
AATGGGAATGGATGTGGACT+AGG 0.528735 2_3:-52707191 Msa0298610:CDS
GGTAAAATCCAATTCAGGGC+AGG 0.530866 2_3:-52707883 Msa0298610:CDS
CTTTGCATATTCAATCCAGT+TGG 0.535136 2_3:+52708066 None:intergenic
CAACACCAGTATCTTTCCTA+AGG 0.536327 2_3:-52707773 Msa0298610:intron
GCGCATCCCATGAAGGCTGT+TGG 0.541703 2_3:+52708009 None:intergenic
ATGATTGGTGGTTCAAGTAC+AGG 0.542267 2_3:+52710002 None:intergenic
TTGTGCCAGCCACAAAAGCT+GGG 0.542281 2_3:+52707279 None:intergenic
GGATTGAATATGCAAAGAAA+AGG 0.542964 2_3:-52708060 Msa0298610:CDS
GCTCATAATGGGAATGGATG+TGG 0.549004 2_3:-52707197 Msa0298610:CDS
ACAGTGTTCAATGTGATGAT+TGG 0.552842 2_3:+52709987 None:intergenic
CCGGAGCCAACAGCCTTCAT+GGG 0.552952 2_3:-52708015 Msa0298610:CDS
GCTTTATCAAGAAGATTGGA+AGG 0.553518 2_3:+52708462 None:intergenic
TACGAACACAATTACAAAGC+CGG 0.554654 2_3:-52709212 Msa0298610:CDS
TTAGCAGCTCATAATGGGAA+TGG 0.559297 2_3:-52707203 Msa0298610:CDS
ACACGCGGAAGCTCATTCTC+AGG 0.559771 2_3:+52710050 None:intergenic
TCCGGGAGCGCATCCCATGA+AGG 0.570436 2_3:+52708002 None:intergenic
TTGAAAGGGTTGTTTGCTAG+GGG 0.570518 2_3:-52707122 Msa0298610:CDS
GATTATGCAATATGCAACTA+GGG 0.573235 2_3:+52707798 None:intergenic
ATCCAAACCGTCTTCTTCAA+CGG 0.576571 2_3:-52710590 Msa0298610:intron
CATGAGAAAGCAAGAAACCA+TGG 0.578989 2_3:+52710684 None:intergenic
TGAGAATGAGCTTCCGCGTG+TGG 0.580303 2_3:-52710048 Msa0298610:CDS
GCAATCCAAGTATCAGATTG+TGG 0.581850 2_3:-52708441 Msa0298610:CDS
GTGTTCAATGTGATGATTGG+TGG 0.582750 2_3:+52709990 None:intergenic
TACATAATAAAGGGCATGGG+AGG 0.589666 2_3:-52708781 Msa0298610:CDS
GTTCAACATAAAAGGCGCAT+TGG 0.592570 2_3:+52709061 None:intergenic
GCTGAAGATGATGCAAATGC+TGG 0.597342 2_3:-52707323 Msa0298610:CDS
CTAGATATGTAGACTAAGTG+AGG 0.598571 2_3:+52709251 None:intergenic
ATAAAAGGATTAAAATCAAG+AGG 0.605462 2_3:+52710763 None:intergenic
TTACATACCGTTGAAGAAGA+CGG 0.605834 2_3:+52710583 None:intergenic
CAGTACATAATAAAGGGCAT+GGG 0.608875 2_3:-52708784 Msa0298610:CDS
CAATGATCCAACAAAAGAGA+TGG 0.612047 2_3:-52707966 Msa0298610:CDS
CTTCAAGGACCTTTCTATGG+AGG 0.612281 2_3:-52708757 Msa0298610:CDS
AGCCGGAGCTATGAATGTGT+TGG 0.613715 2_3:-52709195 Msa0298610:intron
TATGAATATGGCACTTGTTG+GGG 0.620443 2_3:-52708417 Msa0298610:CDS
AAGAAACCATGGAAGTGTGA+AGG 0.621466 2_3:+52710695 None:intergenic
ATTGTAGTGAGTAATCCTCC+GGG 0.635051 2_3:+52707985 None:intergenic
CCAATTTGAGGGAGAATATG+CGG 0.638104 2_3:-52709576 Msa0298610:CDS
TTCATGGGATGCGCTCCCGG+AGG 0.649760 2_3:-52708000 Msa0298610:CDS
TATCCCTAAGAGCTTAAGCA+TGG 0.651527 2_3:+52707397 None:intergenic
TGTGCCAGCCACAAAAGCTG+GGG 0.654114 2_3:+52707280 None:intergenic
GAGATCAGAATGTTGTACAC+CGG 0.663139 2_3:-52708034 Msa0298610:CDS
AAGATGATGCAAATGCTGGT+AGG 0.683909 2_3:-52707319 Msa0298610:CDS
GTCACAAACAAATCCACACG+CGG 0.716627 2_3:+52710035 None:intergenic
GTTGAACGTAGACTGTGACA+TGG 0.762585 2_3:-52709045 Msa0298610:CDS
TGCTAAAGAAGACAACAGTG+AGG 0.786213 2_3:+52707935 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAACACTTGAAAATAA+TGG - chr2_3:52707465-52707484 Msa0298610:CDS 15.0%
!!! AAATCTAATTCTTAGTTTTT+TGG - chr2_3:52708619-52708638 Msa0298610:intron 15.0%
!!! AATCTAATTCTTAGTTTTTT+GGG - chr2_3:52708620-52708639 Msa0298610:intron 15.0%
!!! AAATTTTGTTAATGAGAAAA+CGG - chr2_3:52709423-52709442 Msa0298610:intron 15.0%
!!! GTAAAACTATTTTATATTGT+CGG - chr2_3:52709583-52709602 Msa0298610:CDS 15.0%
!! AGTTAATTAACAAAGTTTAA+TGG + chr2_3:52709616-52709635 None:intergenic 15.0%
!! ATAAAAGGATTAAAATCAAG+AGG + chr2_3:52707000-52707019 None:intergenic 20.0%
!! AACAAAGAAGAGAAAATAAA+AGG + chr2_3:52707015-52707034 None:intergenic 20.0%
!!! TATTTTCAAGTGTTATTTAG+TGG + chr2_3:52707464-52707483 None:intergenic 20.0%
!! TACATTCAATAGTTAGTTAA+TGG + chr2_3:52707562-52707581 None:intergenic 20.0%
!! ATATTATACTTCTTACAGAA+AGG + chr2_3:52707923-52707942 None:intergenic 20.0%
!! ACTTCAGAAAAATATCTAAA+AGG + chr2_3:52707959-52707978 None:intergenic 20.0%
!!! TTATGACATAAGAAGTATAA+TGG - chr2_3:52708079-52708098 Msa0298610:CDS 20.0%
!! AAATCATTCAAGTATAGTTA+AGG - chr2_3:52708229-52708248 Msa0298610:intron 20.0%
!!! TACATGTAATCCTTATTTTT+TGG - chr2_3:52708289-52708308 Msa0298610:intron 20.0%
!!! ACATGTAATCCTTATTTTTT+GGG - chr2_3:52708290-52708309 Msa0298610:intron 20.0%
!!! TTAGATATGTCTAGAAATTT+TGG + chr2_3:52708365-52708384 None:intergenic 20.0%
!! TCAATTAAGAAAGATAAGAA+TGG + chr2_3:52708648-52708667 None:intergenic 20.0%
!! TAATTCCATCATAAAATTGT+TGG + chr2_3:52708829-52708848 None:intergenic 20.0%
!! TTTATGCAGTACATAATAAA+GGG - chr2_3:52708970-52708989 Msa0298610:CDS 20.0%
!!! TGTGTTTTTTAGTATCATAT+AGG + chr2_3:52709148-52709167 None:intergenic 20.0%
!! AAGATATTAATACAGCAATT+TGG - chr2_3:52709202-52709221 Msa0298610:CDS 20.0%
!!! AATTTTGTTAATGAGAAAAC+GGG - chr2_3:52709424-52709443 Msa0298610:intron 20.0%
!! TAAAATTAACTGCAAAATGT+TGG + chr2_3:52709499-52709518 None:intergenic 20.0%
!! AACTTTGTTAATTAACTTTG+AGG - chr2_3:52709619-52709638 Msa0298610:CDS 20.0%
!!! TTAATTAACTTTGAGGATTT+TGG - chr2_3:52709626-52709645 Msa0298610:CDS 20.0%
!!! CAAGTTGAATTAAATATTGA+GGG - chr2_3:52710038-52710057 Msa0298610:CDS 20.0%
!!! ATTAAATATTGAGGGTTTTT+TGG - chr2_3:52710046-52710065 Msa0298610:CDS 20.0%
!!! ATATACTACTTTTTTATTCC+AGG - chr2_3:52710181-52710200 Msa0298610:intron 20.0%
!!! TATACTACTTTTTTATTCCA+GGG - chr2_3:52710182-52710201 Msa0298610:intron 20.0%
!!! AAGGATTATCATTAAGATTT+TGG - chr2_3:52710276-52710295 Msa0298610:intron 20.0%
!!! GTATTAGTCTTAAGATTTAA+TGG - chr2_3:52710758-52710777 Msa0298610:CDS 20.0%
!!! TAGTAAATAAAAAGTACACA+AGG + chr2_3:52710820-52710839 None:intergenic 20.0%
!! TTTATTTACTATTACTCCAT+TGG - chr2_3:52710829-52710848 Msa0298610:CDS 20.0%
! TTCCTCTCTATGAAAAAATT+TGG - chr2_3:52706945-52706964 Msa0298610:three_prime_UTR 25.0%
!!! ATCCAAATTTTTTCATAGAG+AGG + chr2_3:52706950-52706969 None:intergenic 25.0%
! TATGTAGTTAAGATGCTTAA+TGG - chr2_3:52707412-52707431 Msa0298610:CDS 25.0%
!! GTTTGCGAAAACTTTTTAAA+TGG + chr2_3:52707622-52707641 None:intergenic 25.0%
!!! TGTTCTGTTTTTACTTTCTA+TGG - chr2_3:52707860-52707879 Msa0298610:CDS 25.0%
!! TTTTACTTTCTATGGTCTTT+TGG - chr2_3:52707868-52707887 Msa0298610:CDS 25.0%
!!! TTCCAAATTTGCTAAGTTTT+GGG - chr2_3:52707895-52707914 Msa0298610:CDS 25.0%
!! AACCATTCTTGTTTAAATTC+TGG + chr2_3:52708001-52708020 None:intergenic 25.0%
! ACAAGAATGGTTAAAAATGA+AGG - chr2_3:52708009-52708028 Msa0298610:CDS 25.0%
!!! CATGTAATCCTTATTTTTTG+GGG - chr2_3:52708291-52708310 Msa0298610:intron 25.0%
!!! TAGAAATTTTGGTGAAAATG+CGG + chr2_3:52708354-52708373 None:intergenic 25.0%
!!! ATTTTGATGGATTCTAAGAA+TGG - chr2_3:52708776-52708795 Msa0298610:CDS 25.0%
! TGTAAACACAAAATTGTAAG+AGG + chr2_3:52708928-52708947 None:intergenic 25.0%
! CTTTATGCAGTACATAATAA+AGG - chr2_3:52708969-52708988 Msa0298610:CDS 25.0%
! TATAGCATTTCTTCTATGAA+AGG + chr2_3:52709037-52709056 None:intergenic 25.0%
! CATAGAAGAAATGCTATATA+TGG - chr2_3:52709039-52709058 Msa0298610:CDS 25.0%
! TATCCTGATGAAATTCAATA+TGG - chr2_3:52709066-52709085 Msa0298610:CDS 25.0%
! GAAATTCAATATGGAAGAAA+AGG - chr2_3:52709075-52709094 Msa0298610:CDS 25.0%
!! CACACTTTTGTATCTTTATT+AGG - chr2_3:52709166-52709185 Msa0298610:intron 25.0%
!! TAGTGTAAAACTAGTTTACA+CGG + chr2_3:52709461-52709480 None:intergenic 25.0%
!! TTGCAGTTAATTTTACATTG+CGG - chr2_3:52709504-52709523 Msa0298610:intron 25.0%
!! GCAAGTTGAATTAAATATTG+AGG - chr2_3:52710037-52710056 Msa0298610:CDS 25.0%
! GACTATTTGTCAGATATAAT+TGG - chr2_3:52710111-52710130 Msa0298610:intron 25.0%
! TAGATCACAAAAAGAGTTAA+AGG + chr2_3:52710224-52710243 None:intergenic 25.0%
!! GATTATCATTAAGATTTTGG+TGG - chr2_3:52710279-52710298 Msa0298610:intron 25.0%
! TGTATCTAGTAGTATGTTAT+TGG - chr2_3:52710609-52710628 Msa0298610:CDS 25.0%
!!! TACACTTATTTTAAGACCAA+TGG + chr2_3:52710848-52710867 None:intergenic 25.0%
AATCTTGGTTCACTTATACT+TGG - chr2_3:52707101-52707120 Msa0298610:CDS 30.0%
! AGATGCTTAATGGATATATG+AGG - chr2_3:52707422-52707441 Msa0298610:CDS 30.0%
! GCGAAAACTTTTTAAATGGT+TGG + chr2_3:52707618-52707637 None:intergenic 30.0%
!!! CTTCCAAATTTGCTAAGTTT+TGG - chr2_3:52707894-52707913 Msa0298610:CDS 30.0%
TACCCAAAACTTAGCAAATT+TGG + chr2_3:52707900-52707919 None:intergenic 30.0%
CACCAGAATTTAAACAAGAA+TGG - chr2_3:52707996-52708015 Msa0298610:CDS 30.0%
CATGTATATCAATCATTGCA+GGG + chr2_3:52708052-52708071 None:intergenic 30.0%
ACATGTATATCAATCATTGC+AGG + chr2_3:52708053-52708072 None:intergenic 30.0%
TTCAACTTCATTCCAATTTG+AGG - chr2_3:52708172-52708191 Msa0298610:intron 30.0%
TCAACTTCATTCCAATTTGA+GGG - chr2_3:52708173-52708192 Msa0298610:intron 30.0%
CAAATTCAAGTATGAGTACT+TGG + chr2_3:52708415-52708434 None:intergenic 30.0%
!! ACGCTTTATGTTAGTCTTAT+TGG + chr2_3:52708444-52708463 None:intergenic 30.0%
AACAATGATAGTCTTTCTGA+TGG - chr2_3:52708482-52708501 Msa0298610:CDS 30.0%
TTGTAATTGTGTTCGTACTT+TGG + chr2_3:52708545-52708564 None:intergenic 30.0%
CATAGCATGTTGAATAATCT+TGG + chr2_3:52708753-52708772 None:intergenic 30.0%
! TGCTTCCAACAATTTTATGA+TGG - chr2_3:52708821-52708840 Msa0298610:intron 30.0%
CTTCCATATTGAATTTCATC+AGG + chr2_3:52709072-52709091 None:intergenic 30.0%
GATTGCTTTATCAAGAAGAT+TGG + chr2_3:52709305-52709324 None:intergenic 30.0%
TCAGATTGTGGATATGAATA+TGG - chr2_3:52709331-52709350 Msa0298610:intron 30.0%
ATATGAATATGGCACTTGTT+GGG - chr2_3:52709342-52709361 Msa0298610:intron 30.0%
GGATTGAATATGCAAAGAAA+AGG - chr2_3:52709700-52709719 Msa0298610:intron 30.0%
TGAATATGCAAAGAAAAGGT+TGG - chr2_3:52709704-52709723 Msa0298610:intron 30.0%
! GAATTGGATTTTACCAAAGA+GGG + chr2_3:52709872-52709891 None:intergenic 30.0%
! TGAATTGGATTTTACCAAAG+AGG + chr2_3:52709873-52709892 None:intergenic 30.0%
TCTTTGGTAAAATCCAATTC+AGG - chr2_3:52709872-52709891 Msa0298610:CDS 30.0%
CTTTGGTAAAATCCAATTCA+GGG - chr2_3:52709873-52709892 Msa0298610:CDS 30.0%
!! TTATTGTTGGCTTACCAATT+GGG - chr2_3:52709906-52709925 Msa0298610:CDS 30.0%
GATTATGCAATATGCAACTA+GGG + chr2_3:52709965-52709984 None:intergenic 30.0%
TGATTATGCAATATGCAACT+AGG + chr2_3:52709966-52709985 None:intergenic 30.0%
TATCGCAAAAATCTAACCTT+AGG + chr2_3:52710006-52710025 None:intergenic 30.0%
!!! GGTTTTTTGGATTAGTCTAT+TGG - chr2_3:52710059-52710078 Msa0298610:intron 30.0%
!! CTACAAGAGTATCTATCAAA+AGG - chr2_3:52710257-52710276 Msa0298610:intron 30.0%
CAATAAGATCAACAAGTGTA+TGG - chr2_3:52710321-52710340 Msa0298610:intron 30.0%
TCAACAAGTGTATGGTTTAT+TGG - chr2_3:52710329-52710348 Msa0298610:intron 30.0%
!! AGTCTTTGAAGTAACACAAA+AGG - chr2_3:52710394-52710413 Msa0298610:intron 30.0%
!!! AGCACTTGTTGTTAAGATTT+TGG - chr2_3:52710526-52710545 Msa0298610:intron 30.0%
!!! GCACTTGTTGTTAAGATTTT+GGG - chr2_3:52710527-52710546 Msa0298610:intron 30.0%
!!! CACTTGTTGTTAAGATTTTG+GGG - chr2_3:52710528-52710547 Msa0298610:intron 30.0%
!!! ACTTGTTGTTAAGATTTTGG+GGG - chr2_3:52710529-52710548 Msa0298610:intron 30.0%
!!! TGTTATTGGCCATTTTTGAA+AGG - chr2_3:52710623-52710642 Msa0298610:CDS 30.0%
!!! GTTATTGGCCATTTTTGAAA+GGG - chr2_3:52710624-52710643 Msa0298610:CDS 30.0%
GACTTGAAAATGGTAGATAA+TGG + chr2_3:52710677-52710696 None:intergenic 30.0%
! CATAGAGAGGAAGATTTTCT+TGG + chr2_3:52706937-52706956 None:intergenic 35.0%
TGCTGATGGAGAAGAAAATA+CGG + chr2_3:52707039-52707058 None:intergenic 35.0%
!!! TGTGAAGGTTTTTTTGCTGA+TGG + chr2_3:52707053-52707072 None:intergenic 35.0%
AAAAAACCTTCACACTTCCA+TGG - chr2_3:52707059-52707078 Msa0298610:CDS 35.0%
TTGCTTTCTCATGTGAATCT+TGG - chr2_3:52707086-52707105 Msa0298610:CDS 35.0%
GTTCACTTATACTTGGATTG+TGG - chr2_3:52707108-52707127 Msa0298610:CDS 35.0%
!! AAGACGGTTTGGATATGTTT+TGG + chr2_3:52707164-52707183 None:intergenic 35.0%
TTACATACCGTTGAAGAAGA+CGG + chr2_3:52707180-52707199 None:intergenic 35.0%
ATTAACTACGAACTCGAAAG+TGG + chr2_3:52707494-52707513 None:intergenic 35.0%
! TCTTGCTAATTAGTCTCTCA+AGG - chr2_3:52707648-52707667 Msa0298610:intron 35.0%
ACAGTGTTCAATGTGATGAT+TGG + chr2_3:52707776-52707795 None:intergenic 35.0%
! GAACACTGTTTTGTCTCTAT+TGG - chr2_3:52707787-52707806 Msa0298610:CDS 35.0%
! TAACAAGCTAGCTTATTAGC+TGG + chr2_3:52707824-52707843 None:intergenic 35.0%
!! GCTTGTTATGTTTCTGATGA+TGG - chr2_3:52707836-52707855 Msa0298610:CDS 35.0%
TTCTGGTGAATCTTCACTAT+TGG + chr2_3:52707984-52708003 None:intergenic 35.0%
!! TTGTCTTTTGTGTTTGTTGC+AGG - chr2_3:52708103-52708122 Msa0298610:CDS 35.0%
!!! GTAATCCTTATTTTTTGGGG+AGG - chr2_3:52708294-52708313 Msa0298610:intron 35.0%
!! AAAGCGTTGACAGGTTATAT+TGG - chr2_3:52708457-52708476 Msa0298610:CDS 35.0%
CTAGATATGTAGACTAAGTG+AGG + chr2_3:52708512-52708531 None:intergenic 35.0%
TACGAACACAATTACAAAGC+CGG - chr2_3:52708548-52708567 Msa0298610:CDS 35.0%
AATTTGTAGACAAGAGTCTC+AGG - chr2_3:52708668-52708687 Msa0298610:intron 35.0%
CAGTCTACGTTCAACATAAA+AGG + chr2_3:52708710-52708729 None:intergenic 35.0%
! ACATGCTATGTGCATTTTGA+TGG - chr2_3:52708763-52708782 Msa0298610:CDS 35.0%
! GGAATTAAAGATGACCCTTT+TGG - chr2_3:52708842-52708861 Msa0298610:intron 35.0%
!! ATGACCCTTTTGGAAATCAA+TGG - chr2_3:52708852-52708871 Msa0298610:intron 35.0%
!! TGACCCTTTTGGAAATCAAT+GGG - chr2_3:52708853-52708872 Msa0298610:intron 35.0%
! CAGTACATAATAAAGGGCAT+GGG - chr2_3:52708976-52708995 Msa0298610:CDS 35.0%
! TCAGTAACACATGCTTTTGA+AGG - chr2_3:52709247-52709266 Msa0298610:CDS 35.0%
! CAGTAACACATGCTTTTGAA+GGG - chr2_3:52709248-52709267 Msa0298610:CDS 35.0%
GGGAGTGATAATTCAATTGA+TGG - chr2_3:52709268-52709287 Msa0298610:CDS 35.0%
GCTTTATCAAGAAGATTGGA+AGG + chr2_3:52709301-52709320 None:intergenic 35.0%
CATATCCACAATCTGATACT+TGG + chr2_3:52709327-52709346 None:intergenic 35.0%
GATATGAATATGGCACTTGT+TGG - chr2_3:52709341-52709360 Msa0298610:intron 35.0%
! TATGAATATGGCACTTGTTG+GGG - chr2_3:52709343-52709362 Msa0298610:intron 35.0%
GCAAAATGTTGGATTCTCAT+TGG + chr2_3:52709488-52709507 None:intergenic 35.0%
!! AGGATTTTGGAAACATCAGA+TGG - chr2_3:52709639-52709658 Msa0298610:intron 35.0%
!! GGATTTTGGAAACATCAGAT+GGG - chr2_3:52709640-52709659 Msa0298610:intron 35.0%
ATATCAGAAGATGTACCAAC+TGG - chr2_3:52709679-52709698 Msa0298610:intron 35.0%
CTTTGCATATTCAATCCAGT+TGG + chr2_3:52709697-52709716 None:intergenic 35.0%
CAATGATCCAACAAAAGAGA+TGG - chr2_3:52709794-52709813 Msa0298610:CDS 35.0%
!! CTTATTGTTGGCTTACCAAT+TGG - chr2_3:52709905-52709924 Msa0298610:CDS 35.0%
!! TATTGTTGGCTTACCAATTG+GGG - chr2_3:52709907-52709926 Msa0298610:CDS 35.0%
TCTAACCTTAGGAAAGATAC+TGG + chr2_3:52709995-52710014 None:intergenic 35.0%
!!! ACTTTTTTATTCCAGGGACT+TGG - chr2_3:52710188-52710207 Msa0298610:intron 35.0%
!!! CTTTTTTATTCCAGGGACTT+GGG - chr2_3:52710189-52710208 Msa0298610:intron 35.0%
TGTCAATTGCACAAGCAAAA+TGG + chr2_3:52710507-52710526 None:intergenic 35.0%
TGCAATTAGCAGCTCATAAT+GGG - chr2_3:52710552-52710571 Msa0298610:intron 35.0%
GCAAACAACCCTTTCAAAAA+TGG + chr2_3:52710635-52710654 None:intergenic 35.0%
!! TTTTGAAAGGGTTGTTTGCT+AGG - chr2_3:52710636-52710655 Msa0298610:CDS 35.0%
! TTTGAAAGGGTTGTTTGCTA+GGG - chr2_3:52710637-52710656 Msa0298610:CDS 35.0%
! TTGTTTGCTAGGGGTAAATA+TGG - chr2_3:52710647-52710666 Msa0298610:CDS 35.0%
! TGTTTGCTAGGGGTAAATAT+GGG - chr2_3:52710648-52710667 Msa0298610:CDS 35.0%
!! AAGAAGTGCTGACTTGAAAA+TGG + chr2_3:52710687-52710706 None:intergenic 35.0%
GCTTTCTATCATCTGCAGAA+TGG - chr2_3:52706907-52706926 Msa0298610:three_prime_UTR 40.0%
! AAGAAACCATGGAAGTGTGA+AGG + chr2_3:52707068-52707087 None:intergenic 40.0%
CATGAGAAAGCAAGAAACCA+TGG + chr2_3:52707079-52707098 None:intergenic 40.0%
TTGTGGTTCTCAACACCAAA+TGG - chr2_3:52707125-52707144 Msa0298610:CDS 40.0%
!!! GGATATGTTTTGGTAACAGC+AGG + chr2_3:52707154-52707173 None:intergenic 40.0%
ATCCAAACCGTCTTCTTCAA+CGG - chr2_3:52707170-52707189 Msa0298610:CDS 40.0%
GAAATCAGTGCAAGACTTCA+TGG + chr2_3:52707363-52707382 None:intergenic 40.0%
TCATTCTCAGGTACTCTAGT+AGG + chr2_3:52707701-52707720 None:intergenic 40.0%
! ATGATTGGTGGTTCAAGTAC+AGG + chr2_3:52707761-52707780 None:intergenic 40.0%
GTGTTCAATGTGATGATTGG+TGG + chr2_3:52707773-52707792 None:intergenic 40.0%
! GCGTCACATCTTCAATTTTG+TGG + chr2_3:52708148-52708167 None:intergenic 40.0%
CCAATTTGAGGGAGAATATG+CGG - chr2_3:52708184-52708203 Msa0298610:intron 40.0%
GTCAACCTCCCCAAAAAATA+AGG + chr2_3:52708302-52708321 None:intergenic 40.0%
!! GACTAACATAAAGCGTTGAC+AGG - chr2_3:52708448-52708467 Msa0298610:CDS 40.0%
TACCAACACATTCATAGCTC+CGG + chr2_3:52708570-52708589 None:intergenic 40.0%
! GTTCAACATAAAAGGCGCAT+TGG + chr2_3:52708702-52708721 None:intergenic 40.0%
!! CCACCCATTGATTTCCAAAA+GGG + chr2_3:52708859-52708878 None:intergenic 40.0%
GCAGTACATAATAAAGGGCA+TGG - chr2_3:52708975-52708994 Msa0298610:CDS 40.0%
! TACATAATAAAGGGCATGGG+AGG - chr2_3:52708979-52708998 Msa0298610:CDS 40.0%
GTGTTTGTTCCTCCATAGAA+AGG + chr2_3:52709015-52709034 None:intergenic 40.0%
GCAATCCAAGTATCAGATTG+TGG - chr2_3:52709319-52709338 Msa0298610:intron 40.0%
GGTTATAAAGTTGCCTTGTG+TGG - chr2_3:52709525-52709544 Msa0298610:intron 40.0%
!! AGTTTGCTGTCGTTAGATGT+CGG - chr2_3:52709559-52709578 Msa0298610:CDS 40.0%
TTTGGAAACATCAGATGGGT+TGG - chr2_3:52709644-52709663 Msa0298610:intron 40.0%
!! CATCAGATGGGTTGGTTATA+TGG - chr2_3:52709652-52709671 Msa0298610:intron 40.0%
GAGATCAGAATGTTGTACAC+CGG - chr2_3:52709726-52709745 Msa0298610:intron 40.0%
ATTGTAGTGAGTAATCCTCC+GGG + chr2_3:52709778-52709797 None:intergenic 40.0%
CATTGTAGTGAGTAATCCTC+CGG + chr2_3:52709779-52709798 None:intergenic 40.0%
! CTGAAGACCATCTCTTTTGT+TGG + chr2_3:52709804-52709823 None:intergenic 40.0%
CAACAAAAGAGATGGTCTTC+AGG - chr2_3:52709802-52709821 Msa0298610:CDS 40.0%
TGCTAAAGAAGACAACAGTG+AGG + chr2_3:52709828-52709847 None:intergenic 40.0%
AGCAAGCATTCTCCTGTTAT+AGG - chr2_3:52709844-52709863 Msa0298610:CDS 40.0%
CAACACCAGTATCTTTCCTA+AGG - chr2_3:52709987-52710006 Msa0298610:CDS 40.0%
GTCTATTGGAGCTTATCTAC+TGG - chr2_3:52710073-52710092 Msa0298610:intron 40.0%
TATCCCTAAGAGCTTAAGCA+TGG + chr2_3:52710366-52710385 None:intergenic 40.0%
CAAAAGGAAAGTCCAACTTC+TGG - chr2_3:52710410-52710429 Msa0298610:intron 40.0%
AAGATGATGCAAATGCTGGT+AGG - chr2_3:52710441-52710460 Msa0298610:intron 40.0%
GTGCAATTAGCAGCTCATAA+TGG - chr2_3:52710551-52710570 Msa0298610:intron 40.0%
! TTAGCAGCTCATAATGGGAA+TGG - chr2_3:52710557-52710576 Msa0298610:intron 40.0%
! TTGAAAGGGTTGTTTGCTAG+GGG - chr2_3:52710638-52710657 Msa0298610:CDS 40.0%
TACCGTTGAAGAAGACGGTT+TGG + chr2_3:52707175-52707194 None:intergenic 45.0%
AGTTGCAGCGACATCAAGAT+CGG - chr2_3:52707281-52707300 Msa0298610:CDS 45.0%
TGTTGCAGTTTATGCTGCAG+TGG - chr2_3:52707322-52707341 Msa0298610:CDS 45.0%
GTCACAAACAAATCCACACG+CGG + chr2_3:52707728-52707747 None:intergenic 45.0%
CCGCATATTCTCCCTCAAAT+TGG + chr2_3:52708187-52708206 None:intergenic 45.0%
CGTTCATTGCTAGTCGATGT+AGG - chr2_3:52708388-52708407 Msa0298610:intron 45.0%
GTTGAACGTAGACTGTGACA+TGG - chr2_3:52708715-52708734 Msa0298610:CDS 45.0%
!! CCCTTTTGGAAATCAATGGG+TGG - chr2_3:52708856-52708875 Msa0298610:intron 45.0%
!! GCCACCCATTGATTTCCAAA+AGG + chr2_3:52708860-52708879 None:intergenic 45.0%
TCAATGGGTGGCTTCATTTG+AGG - chr2_3:52708868-52708887 Msa0298610:intron 45.0%
GGACTTCAAGGACCTTTCTA+TGG - chr2_3:52709000-52709019 Msa0298610:CDS 45.0%
CTTCAAGGACCTTTCTATGG+AGG - chr2_3:52709003-52709022 Msa0298610:CDS 45.0%
CTTCAAAGACAGACCACACA+AGG + chr2_3:52709541-52709560 None:intergenic 45.0%
!! CCAAAGAGGGTACCTATAAC+AGG + chr2_3:52709859-52709878 None:intergenic 45.0%
CCTGTTATAGGTACCCTCTT+TGG - chr2_3:52709856-52709875 Msa0298610:CDS 45.0%
GGTAAAATCCAATTCAGGGC+AGG - chr2_3:52709877-52709896 Msa0298610:CDS 45.0%
AGTGCCATGCTTAAGCTCTT+AGG - chr2_3:52710359-52710378 Msa0298610:intron 45.0%
GTGCCATGCTTAAGCTCTTA+GGG - chr2_3:52710360-52710379 Msa0298610:intron 45.0%
GCTGAAGATGATGCAAATGC+TGG - chr2_3:52710437-52710456 Msa0298610:intron 45.0%
! GCTCATAATGGGAATGGATG+TGG - chr2_3:52710563-52710582 Msa0298610:intron 45.0%
AATGGGAATGGATGTGGACT+AGG - chr2_3:52710569-52710588 Msa0298610:intron 45.0%
GGTAACAGCAGGACTCCATT+TGG + chr2_3:52707143-52707162 None:intergenic 50.0%
TGCAGTTTATGCTGCAGTGG+CGG - chr2_3:52707325-52707344 Msa0298610:CDS 50.0%
TGTGACCGACAAGAAAGACC+AGG - chr2_3:52708325-52708344 Msa0298610:intron 50.0%
! GGTGTCCTGGTCTTTCTTGT+CGG + chr2_3:52708333-52708352 None:intergenic 50.0%
TTGGTGAAAATGCGGTGTCC+TGG + chr2_3:52708346-52708365 None:intergenic 50.0%
AGCCGGAGCTATGAATGTGT+TGG - chr2_3:52708565-52708584 Msa0298610:CDS 50.0%
! TGGCACTTGTTGGGGTAAAC+AGG - chr2_3:52709351-52709370 Msa0298610:intron 50.0%
AAGACAAGCCTGCCCTGAAT+TGG + chr2_3:52709888-52709907 None:intergenic 50.0%
! GGGCAGGCTTGTCTTATTGT+TGG - chr2_3:52709893-52709912 Msa0298610:CDS 50.0%
TACCAATTGGGGTCTGCGTT+CGG - chr2_3:52709918-52709937 Msa0298610:CDS 50.0%
TATTCCAGGGACTTGGGCTA+TGG - chr2_3:52710195-52710214 Msa0298610:intron 50.0%
TCTTCAGCAGCACCAGAAGT+TGG + chr2_3:52710425-52710444 None:intergenic 50.0%
! TGATGAGTCCCCAGCTTTTG+TGG - chr2_3:52710472-52710491 Msa0298610:intron 50.0%
TTGTGCCAGCCACAAAAGCT+GGG + chr2_3:52710484-52710503 None:intergenic 50.0%
ACACGCGGAAGCTCATTCTC+AGG + chr2_3:52707713-52707732 None:intergenic 55.0%
TGAGAATGAGCTTCCGCGTG+TGG - chr2_3:52707712-52707731 Msa0298610:intron 55.0%
! AAGGGCATGGGAGGACTTCA+AGG - chr2_3:52708988-52709007 Msa0298610:CDS 55.0%
GAATCCATAGCCCAAGTCCC+TGG + chr2_3:52710202-52710221 None:intergenic 55.0%
TGTGCCAGCCACAAAAGCTG+GGG + chr2_3:52710483-52710502 None:intergenic 55.0%
GTTGTGCCAGCCACAAAAGC+TGG + chr2_3:52710485-52710504 None:intergenic 55.0%
ACCGGAGCCAACAGCCTTCA+TGG - chr2_3:52709744-52709763 Msa0298610:intron 60.0%
!! CCCATGAAGGCTGTTGGCTC+CGG + chr2_3:52709748-52709767 None:intergenic 60.0%
CCGGAGCCAACAGCCTTCAT+GGG - chr2_3:52709745-52709764 Msa0298610:intron 60.0%
GCGCATCCCATGAAGGCTGT+TGG + chr2_3:52709754-52709773 None:intergenic 60.0%
GACCGAACGCAGACCCCAAT+TGG + chr2_3:52709923-52709942 None:intergenic 60.0%
! GAGTCCCCAGCTTTTGTGGC+TGG - chr2_3:52710476-52710495 Msa0298610:intron 60.0%
GCCTTCATGGGATGCGCTCC+CGG - chr2_3:52709757-52709776 Msa0298610:CDS 65.0%
! TCCGGGAGCGCATCCCATGA+AGG + chr2_3:52709761-52709780 None:intergenic 65.0%
TTCATGGGATGCGCTCCCGG+AGG - chr2_3:52709760-52709779 Msa0298610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 52706894 52710888 52706894 ID=Msa0298610;Name=Msa0298610
chr2_3 mRNA 52706894 52710888 52706894 ID=Msa0298610-mRNA-1;Parent=Msa0298610;Name=Msa0298610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=32|1|1|1|1|1|9|134|750
chr2_3 exon 52706894 52707579 52706894 ID=Msa0298610-mRNA-1:exon:16876;Parent=Msa0298610-mRNA-1
chr2_3 exon 52707774 52708124 52707774 ID=Msa0298610-mRNA-1:exon:16875;Parent=Msa0298610-mRNA-1
chr2_3 exon 52708410 52708594 52708410 ID=Msa0298610-mRNA-1:exon:16874;Parent=Msa0298610-mRNA-1
chr2_3 exon 52708686 52708803 52708686 ID=Msa0298610-mRNA-1:exon:16873;Parent=Msa0298610-mRNA-1
chr2_3 exon 52708893 52709105 52708893 ID=Msa0298610-mRNA-1:exon:16872;Parent=Msa0298610-mRNA-1
chr2_3 exon 52709196 52709312 52709196 ID=Msa0298610-mRNA-1:exon:16871;Parent=Msa0298610-mRNA-1
chr2_3 exon 52709532 52709657 52709532 ID=Msa0298610-mRNA-1:exon:16870;Parent=Msa0298610-mRNA-1
chr2_3 exon 52709752 52710076 52709752 ID=Msa0298610-mRNA-1:exon:16869;Parent=Msa0298610-mRNA-1
chr2_3 exon 52710591 52710888 52710591 ID=Msa0298610-mRNA-1:exon:16868;Parent=Msa0298610-mRNA-1
chr2_3 five_prime_UTR 52710857 52710888 52710857 ID=Msa0298610-mRNA-1:five_prime_utr;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52710591 52710856 52710591 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52709752 52710076 52709752 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52709532 52709657 52709532 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52709196 52709312 52709196 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52708893 52709105 52708893 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52708686 52708803 52708686 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52708410 52708594 52708410 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52707774 52708124 52707774 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 CDS 52707028 52707579 52707028 ID=Msa0298610-mRNA-1:cds;Parent=Msa0298610-mRNA-1
chr2_3 three_prime_UTR 52706894 52707027 52706894 ID=Msa0298610-mRNA-1:three_prime_utr;Parent=Msa0298610-mRNA-1
Gene Sequence

>Msa0298610

ATGGTCAACCAAGAAAATCTTCCTCTCTATGAAAAAATTTGGATTAAACGCACACTTCAAAGAGCAATAGACCTCTTGATTTTAATCCTTTTATTTTCTCTTCTTTGTTACCGTATTTTCTTCTCCATCAGCAAAAAAACCTTCACACTTCCATGGTTTCTTGCTTTCTCATGTGAATCTTGGTTCACTTATACTTGGATTGTGGTTCTCAACACCAAATGGAGTCCTGCTGTTACCAAAACATATCCAAACCGTCTTCTTCAACGAGTACCTGAGAATGAGCTTCCGCGTGTGGATTTGTTTGTGACAACAGCAGATCCTGTACTTGAACCACCAATCATCACATTGAACACTGTTTTGTCTCTATTGGCTCTTGATTATCCAGCTAATAAGCTAGCTTGTTATGTTTCTGATGATGGCTGTTCTGTTTTTACTTTCTATGGTCTTTTGGAAGCTTCCAAATTTGCTAAGTTTTGGGTACCTTTCTGTAAGAAGTATAATATACAAGTTAGAGCACCTTTTAGATATTTTTCTGAAGTTACCAATAGTGAAGATTCACCAGAATTTAAACAAGAATGGTTAAAAATGAAGGATATGTATGACAATCTTAGCCACAAAATTGAAGATGTGACGCTAAATTCAACTTCATTCCAATTTGAGGGAGAATATGCGGTGTTCTTAAATACAGAAAAAAGAAATCATTCAAGTATAGTTAAGGTTATATTGGAGAACAATGATAGTCTTTCTGATGGATTGCCTCACTTAGTCTACATATCTAGAGAGAAGAGACCAAAGTACGAACACAATTACAAAGCCGGAGCTATGAATGTGTTGACAAGAGTCTCAGGATTGATGACCAATGCGCCTTTTATGTTGAACGTAGACTGTGACATGGTTGTGAACAATGCCAAGATTATTCAACATGCTATGTGCATTTTGATGGATTCTAAGAATGGAAAAGATGTTGCTTTTGTTCAATGCTTCCAACAATTTTATGATGGAATTAAAGATGACCCTTTTGGAAATCAATGGGTGGCTTCATTTGAGTACATAATAAAGGGCATGGGAGGACTTCAAGGACCTTTCTATGGAGGAACAAACACCTTTCATAGAAGAAATGCTATATATGGTCTTTATCCTGATGAAATTCAATATGGAAGAAAAGGAAAAATAACAGAAAAGATATTAATACAGCAATTTGGAAGCTCAAGAGAGTTTGTCAAATCAGTAACACATGCTTTTGAAGGGAGTGATAATTCAATTGATGGTATTAGTCCTTCCAATCTTCTTGATAAAGCAATCCAAGTATCAGATTGTGGATATGAATATGGCACTTGTTGGGGTAAACAGATGGGTTGGTTATATGGATCAATATCAGAAGATGTACCAACTGGATTGAATATGCAAAGAAAAGGTTGGAGATCAGAATGTTGTACACCGGAGCCAACAGCCTTCATGGGATGCGCTCCCGGAGGATTACTCACTACAATGATCCAACAAAAGAGATGGTCTTCAGGCCTCACTGTTGTCTTCTTTAGCAAGCATTCTCCTGTTATAGGTACCCTCTTTGGTAAAATCCAATTCAGGGCAGGCTTGTCTTATTGTTGGCTTACCAATTGGGGTCTGCGTTCGGTCTTTGAAGTTTCTTATGCAGCCCTAGTTGCATATTGCATAATCATCAACACCAGTATCTTTCCTAAGGGACTTGGGCTATGGATTCCTTTAACTCTTTTTGTGATCTATACTATACATACACTACAAGAGTATCTATCAAAAGGATTATCATTAAGATTTTGGTGGAACAATCAGAGAATGATTACAATAAGATCAACAAGTGTATGGTTTATTGGATTTTTGAGTGCCATGCTTAAGCTCTTAGGGATATCTGATACAGTCTTTGAAGTAACACAAAAGGAAAGTCCAACTTCTGGTGCTGCTGAAGATGATGCAAATGCTGGTAGGTTCACATTTGATGAGTCCCCAGCTTTTGTGGCTGGCACAACCATTTTGCTTGTGCAATTGACAGCACTTGTTGTTAAGATTTTGGGGGTGCAATTAGCAGCTCATAATGGGAATGGATGTGGACTAGGTGAGTTAATGTGTAGTGTGTATCTAGTAGTATGTTATTGGCCATTTTTGAAAGGGTTGTTTGCTAGGGGTAAATATGGGATTCCATTATCTACCATTTTCAAGTCAGCACTTCTTACATTTATTTTTGTGCACTTCACTAGAATTGCTGTTGTAAGTAGATAG
Protein sequence

>Msa0298610

MVNQENLPLYEKIWIKRTLQRAIDLLILILLFSLLCYRIFFSISKKTFTLPWFLAFSCESWFTYTWIVVLNTKWSPAVTKTYPNRLLQRVPENELPRVDLFVTTADPVLEPPIITLNTVLSLLALDYPANKLACYVSDDGCSVFTFYGLLEASKFAKFWVPFCKKYNIQVRAPFRYFSEVTNSEDSPEFKQEWLKMKDMYDNLSHKIEDVTLNSTSFQFEGEYAVFLNTEKRNHSSIVKVILENNDSLSDGLPHLVYISREKRPKYEHNYKAGAMNVLTRVSGLMTNAPFMLNVDCDMVVNNAKIIQHAMCILMDSKNGKDVAFVQCFQQFYDGIKDDPFGNQWVASFEYIIKGMGGLQGPFYGGTNTFHRRNAIYGLYPDEIQYGRKGKITEKILIQQFGSSREFVKSVTHAFEGSDNSIDGISPSNLLDKAIQVSDCGYEYGTCWGKQMGWLYGSISEDVPTGLNMQRKGWRSECCTPEPTAFMGCAPGGLLTTMIQQKRWSSGLTVVFFSKHSPVIGTLFGKIQFRAGLSYCWLTNWGLRSVFEVSYAALVAYCIIINTSIFPKGLGLWIPLTLFVIYTIHTLQEYLSKGLSLRFWWNNQRMITIRSTSVWFIGFLSAMLKLLGISDTVFEVTQKESPTSGAAEDDANAGRFTFDESPAFVAGTTILLVQLTALVVKILGVQLAAHNGNGCGLGELMCSVYLVVCYWPFLKGLFARGKYGIPLSTIFKSALLTFIFVHFTRIAVVSR*