AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0409080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0409080 MtrunA17_Chr3g0100061 74.396 207 6 2 1 207 1 160 2.27e-90 262
Msa0409080 MtrunA17_Chr2g0289661 43.750 176 71 6 1 149 1 175 8.79e-33 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0409080 AT4G22320.2 45.736 129 36 5 1 97 1 127 7.64e-26 100
Msa0409080 AT4G22320.1 45.736 129 36 5 1 97 1 127 7.97e-26 100
Msa0409080 AT5G55210.1 47.154 123 49 5 1 108 1 122 5.51e-19 80.9

Find 79 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATAAGTGAAAAGCATTT+TGG 0.150915 3_2:-49421605 None:intergenic
CTTTCTTACTTGTACTTCTT+TGG 0.186675 3_2:+49416768 Msa0409080:five_prime_UTR
ATGTCTTATATTTGCATCTT+TGG 0.192123 3_2:+49421631 Msa0409080:three_prime_UTR
AATGATTAAAAGACCATCTT+TGG 0.241909 3_2:-49421770 None:intergenic
TCAATGGTCCTGTTCGAAAA+TGG 0.277645 3_2:+49416953 Msa0409080:CDS
ATTTCACCGACAACACAAAA+TGG 0.282152 3_2:+49416870 Msa0409080:exon
TGCGCTGGAAGAACAGAAAA+AGG 0.298246 3_2:+49418763 Msa0409080:CDS
TTCCAAATGATCATCACTTC+TGG 0.311356 3_2:-49421342 None:intergenic
TTCGAAAATGGGAGAAGAAA+TGG 0.334347 3_2:+49416965 Msa0409080:CDS
AATTACAAAGACTTGGTTCA+TGG 0.342790 3_2:-49421385 None:intergenic
AGTATAACGAAACTTCCTTC+TGG 0.349574 3_2:-49417127 None:intergenic
CGGCAATGCGGAGCGGCTAT+TGG 0.374001 3_2:+49420332 Msa0409080:CDS
AGCCAGAAGTGATGATCATT+TGG 0.381388 3_2:+49421340 Msa0409080:exon
CTCGTTTACTTCTTCGTCGT+TGG 0.428526 3_2:+49417055 Msa0409080:CDS
ACTACTACTGTCTACACTAT+AGG 0.429804 3_2:-49421564 None:intergenic
CAATGGTCCTGTTCGAAAAT+GGG 0.433206 3_2:+49416954 Msa0409080:CDS
AACCACATCTATGTGAATAT+AGG 0.443657 3_2:-49421425 None:intergenic
GGTGCACCTGCGGTGTTCAA+TGG 0.447459 3_2:+49416937 Msa0409080:CDS
GCAGAAGAAGAGTTTGTAAC+CGG 0.458649 3_2:-49417081 None:intergenic
CGGCTATTGGCTGCCACTGT+GGG 0.472357 3_2:+49420345 Msa0409080:CDS
GTATAACGAAACTTCCTTCT+GGG 0.477833 3_2:-49417126 None:intergenic
TCGAAAATGGGAGAAGAAAT+GGG 0.477944 3_2:+49416966 Msa0409080:CDS
CTTCCTTCTGGGTGGCTCAT+CGG 0.478780 3_2:-49417115 None:intergenic
TTCTTGTTGTCAAAGGAAGA+AGG 0.491322 3_2:-49417000 None:intergenic
GTGTTGTCGGTGAAATTGAA+TGG 0.491414 3_2:-49416863 None:intergenic
GACAGTGGGTTCTACGAGGT+TGG 0.491549 3_2:+49416894 Msa0409080:CDS
TTCAAACTCCGCTAGTACAG+AGG 0.497757 3_2:-49421730 None:intergenic
ACTTCTTCGTCGTTGGACTC+CGG 0.505495 3_2:+49417062 Msa0409080:CDS
GCTTTAGCCATCGATCATGA+TGG 0.512986 3_2:+49416673 None:intergenic
GATCTTAGTTTCGACTTCCA+AGG 0.516196 3_2:+49421301 Msa0409080:CDS
ACAGTGGGTTCTACGAGGTT+GGG 0.517291 3_2:+49416895 Msa0409080:CDS
GCATTATGTGATATGATTTG+AGG 0.526838 3_2:+49421531 Msa0409080:three_prime_UTR
ATCTTAGTTTCGACTTCCAA+GGG 0.531457 3_2:+49421302 Msa0409080:CDS
GGATTCAAACATGAATGAGT+TGG 0.538823 3_2:+49421279 Msa0409080:intron
CATGATACAGATTGCTGCGC+TGG 0.541228 3_2:+49418748 Msa0409080:intron
GTGAGGGGATAGTGTCTCAA+AGG 0.543543 3_2:+49421691 Msa0409080:three_prime_UTR
TTGTCTGTCTAGCTGTCACT+TGG 0.543954 3_2:-49418832 None:intergenic
ATATTATAATTACAAAGACT+TGG 0.548907 3_2:-49421392 None:intergenic
GCTCCGCATTGCCGCGATTG+CGG 0.555721 3_2:-49420323 None:intergenic
GGATCTCTGAAGTCCAAAGA+TGG 0.561603 3_2:+49421757 Msa0409080:three_prime_UTR
GTCGGTGAAATTGAATGGAA+TGG 0.561866 3_2:-49416858 None:intergenic
TACAAACTCTTCTTCTGCTG+AGG 0.566729 3_2:+49417086 Msa0409080:CDS
GCGGCTATTGGCTGCCACTG+TGG 0.569327 3_2:+49420344 Msa0409080:CDS
GCTTACGAGATGCGCTGCGG+CGG 0.569962 3_2:-49420442 None:intergenic
TTTGTAATTATAATATCACT+TGG 0.576638 3_2:+49421399 Msa0409080:three_prime_UTR
GACAGTAGTAGTATATGTGA+GGG 0.578485 3_2:+49421675 Msa0409080:three_prime_UTR
CCTGTCGTGTCACGTATCAC+AGG 0.579026 3_2:+49420369 Msa0409080:CDS
CTTTAGCCATCGATCATGAT+GGG 0.580276 3_2:+49416674 None:intergenic
TGAGGGGATAGTGTCTCAAA+GGG 0.590234 3_2:+49421692 Msa0409080:three_prime_UTR
GGGAAATAGTGCCGCAATCG+CGG 0.593263 3_2:+49420312 Msa0409080:intron
AGTTTCGACTTCCAAGGGAA+CGG 0.594707 3_2:+49421307 Msa0409080:CDS
GGTAGAGCATCTTCACGCTA+CGG 0.597421 3_2:+49416916 Msa0409080:CDS
AATTTATTCTAGTCAAGTCA+AGG 0.600113 3_2:-49416698 None:intergenic
GCAATCGCGGCAATGCGGAG+CGG 0.603820 3_2:+49420325 Msa0409080:CDS
TGATTCACTCTTCTTGAACA+AGG 0.605446 3_2:+49416729 Msa0409080:five_prime_UTR
TCAAACTCCGCTAGTACAGA+GGG 0.607660 3_2:-49421729 None:intergenic
TTCACGCTACGGTGCACCTG+CGG 0.611469 3_2:+49416927 Msa0409080:CDS
ATCCTATATTCACATAGATG+TGG 0.617089 3_2:+49421423 Msa0409080:three_prime_UTR
ACAGGACCATTGAACACCGC+AGG 0.617703 3_2:-49416943 None:intergenic
ATGTGAATCATGAGGTGCAT+GGG 0.621369 3_2:+49418855 Msa0409080:CDS
AGACAGTAGTAGTATATGTG+AGG 0.622516 3_2:+49421674 Msa0409080:three_prime_UTR
TTTCCGATGAGCCACCCAGA+AGG 0.631151 3_2:+49417112 Msa0409080:CDS
ACAACACAAAATGGAGACAG+TGG 0.643427 3_2:+49416879 Msa0409080:exon
TACTAGCGGAGTTTGAACTC+AGG 0.651024 3_2:+49421736 Msa0409080:three_prime_UTR
CCTGTGATACGTGACACGAC+AGG 0.652763 3_2:-49420369 None:intergenic
TTTACATCCCTCTGTACTAG+CGG 0.657307 3_2:+49421722 Msa0409080:three_prime_UTR
CTCTGTAAACATGTCTGACG+CGG 0.657407 3_2:-49420397 None:intergenic
CAACACAAAATGGAGACAGT+GGG 0.657648 3_2:+49416880 Msa0409080:exon
ACAGACAAATGTGAATCATG+AGG 0.659552 3_2:+49418847 Msa0409080:CDS
TTCGACTTCCAAGGGAACGG+TGG 0.670718 3_2:+49421310 Msa0409080:CDS
GTGCCGCAATCGCGGCAATG+CGG 0.670762 3_2:+49420320 Msa0409080:intron
ACAGTAGTAGTATATGTGAG+GGG 0.671101 3_2:+49421676 Msa0409080:three_prime_UTR
TTACAGAGCAGACAGCGTGT+TGG 0.673212 3_2:+49420412 Msa0409080:CDS
AATGTGAATCATGAGGTGCA+TGG 0.681852 3_2:+49418854 Msa0409080:CDS
CGTGTCACGTATCACAGGAG+CGG 0.685117 3_2:+49420374 Msa0409080:CDS
ATCGCTTACGAGATGCGCTG+CGG 0.688071 3_2:-49420445 None:intergenic
TAACGAAACTTCCTTCTGGG+TGG 0.697431 3_2:-49417123 None:intergenic
TGGAGACAGTGGGTTCTACG+AGG 0.724044 3_2:+49416890 Msa0409080:CDS
TGACACGACAGGTCCCACAG+TGG 0.800281 3_2:-49420358 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTTTAAAAGTAAAAAA+CGG - chr3_2:49419228-49419247 None:intergenic 10.0%
!! ATATTCTATCAAAATATAAA+TGG + chr3_2:49419513-49419532 Msa0409080:intron 10.0%
!! TATTTATAATTCATAAAATG+TGG - chr3_2:49419941-49419960 None:intergenic 10.0%
!!! CATATTTGATTTTTTTTTTT+TGG - chr3_2:49420858-49420877 None:intergenic 10.0%
!! CAAAAAAAAAAAATCAAATA+TGG + chr3_2:49420856-49420875 Msa0409080:intron 10.0%
!!! TTGTCTTTTATTTATGTTTT+AGG + chr3_2:49417161-49417180 Msa0409080:intron 15.0%
!!! AAAAATTGATTTGAATGAAT+TGG - chr3_2:49418050-49418069 None:intergenic 15.0%
!!! TTTCATATGTTTTTCTTTTT+TGG + chr3_2:49418292-49418311 Msa0409080:intron 15.0%
!! TGTATTAGATTATGAAAAAA+AGG + chr3_2:49419819-49419838 Msa0409080:intron 15.0%
!!! AAAAGCCAATTTTAAAATTT+GGG + chr3_2:49420201-49420220 Msa0409080:intron 15.0%
!!! TATATCCCAAATTTTAAAAT+TGG - chr3_2:49420209-49420228 None:intergenic 15.0%
!! GAACAAAAAAAAAAAAAAAC+AGG - chr3_2:49420700-49420719 None:intergenic 15.0%
!! ATAATGATCAATAATAACAT+TGG + chr3_2:49421231-49421250 Msa0409080:intron 15.0%
!! ATATTATAATTACAAAGACT+TGG - chr3_2:49421395-49421414 None:intergenic 15.0%
!! TTTGTAATTATAATATCACT+TGG + chr3_2:49421399-49421418 Msa0409080:three_prime_UTR 15.0%
!! GAAAATGAAGTAGATATTTA+GGG + chr3_2:49417200-49417219 Msa0409080:intron 20.0%
!!! AGATATTTAGGGTTTTATTT+TGG + chr3_2:49417211-49417230 Msa0409080:intron 20.0%
!!! GATATTTAGGGTTTTATTTT+GGG + chr3_2:49417212-49417231 Msa0409080:intron 20.0%
!!! ATATTTAGGGTTTTATTTTG+GGG + chr3_2:49417213-49417232 Msa0409080:intron 20.0%
!! TTTAATGTAATCATGTGTAT+CGG - chr3_2:49417683-49417702 None:intergenic 20.0%
!!! ATGAAGAAAATTTTCAATGA+GGG - chr3_2:49418146-49418165 None:intergenic 20.0%
!!! TTGTTGTCTCTTTAATTTTT+TGG + chr3_2:49418206-49418225 Msa0409080:intron 20.0%
!! AATTATGATATTGTTTGACT+CGG + chr3_2:49418343-49418362 Msa0409080:intron 20.0%
!! ACAGAAATTAACTTATATTG+CGG - chr3_2:49419769-49419788 None:intergenic 20.0%
!! TAACATTGAGCATTAATTAT+TGG + chr3_2:49420029-49420048 Msa0409080:intron 20.0%
!!! GAAAAGCCAATTTTAAAATT+TGG + chr3_2:49420200-49420219 Msa0409080:intron 20.0%
!!! TTTAAAATTTGGGATATAAG+AGG + chr3_2:49420211-49420230 Msa0409080:intron 20.0%
!! CAAAAAAAAAAAAAAACAGG+AGG - chr3_2:49420697-49420716 None:intergenic 20.0%
!! TGAATAATACTATAAACACA+CGG - chr3_2:49420827-49420846 None:intergenic 20.0%
!!! TGTAAACTATTTTTCATCTT+CGG + chr3_2:49421136-49421155 Msa0409080:intron 20.0%
! AATTTATTCTAGTCAAGTCA+AGG - chr3_2:49416701-49416720 None:intergenic 25.0%
! AATAAAAGACAATGACATAC+AGG - chr3_2:49417153-49417172 None:intergenic 25.0%
!!! TTTAGGTTTTTTTTGTTCTG+TGG + chr3_2:49417178-49417197 Msa0409080:intron 25.0%
! GGAAAATGAAGTAGATATTT+AGG + chr3_2:49417199-49417218 Msa0409080:intron 25.0%
!!! TGTTGGCTTTAATTTTTTGT+TGG + chr3_2:49417271-49417290 Msa0409080:intron 25.0%
!!! GTTGGCTTTAATTTTTTGTT+GGG + chr3_2:49417272-49417291 Msa0409080:intron 25.0%
!!! TTAATTTTTTGTTGGGTTTG+TGG + chr3_2:49417279-49417298 Msa0409080:intron 25.0%
! TGTAAAAAAAGAAGAAGGTA+AGG - chr3_2:49417575-49417594 None:intergenic 25.0%
! TCTTGTGTAAAAAAAGAAGA+AGG - chr3_2:49417580-49417599 None:intergenic 25.0%
!!! TTCTTCTTTTTTTACACAAG+AGG + chr3_2:49417579-49417598 Msa0409080:intron 25.0%
!! ACTATGTTTGGTTTAAATTG+TGG + chr3_2:49417867-49417886 Msa0409080:intron 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr3_2:49417916-49417935 Msa0409080:intron 25.0%
!!! ATTGATTTTAACTTGAAGCT+AGG + chr3_2:49417954-49417973 Msa0409080:intron 25.0%
! TTGAGTGTAAAAATCATGTT+TGG - chr3_2:49417997-49418016 None:intergenic 25.0%
! GAATTGGTATTAGTTAAAAG+TGG - chr3_2:49418034-49418053 None:intergenic 25.0%
!! CATGAAGAAAATTTTCAATG+AGG - chr3_2:49418147-49418166 None:intergenic 25.0%
!! TAGTTTGTCTTCAATTCATT+AGG + chr3_2:49418242-49418261 Msa0409080:intron 25.0%
! AGTTTGTCTTCAATTCATTA+GGG + chr3_2:49418243-49418262 Msa0409080:intron 25.0%
! ATTATGATATTGTTTGACTC+GGG + chr3_2:49418344-49418363 Msa0409080:intron 25.0%
!!! GAATATGAATGAAGTTTTAG+AGG + chr3_2:49418883-49418902 Msa0409080:CDS 25.0%
! GTTATGACATCAAAAAAACT+TGG - chr3_2:49419199-49419218 None:intergenic 25.0%
! TAAAAGTAAAAAACGGTCTT+TGG - chr3_2:49419221-49419240 None:intergenic 25.0%
!! CAATAAAACAGTTTGAAACA+GGG - chr3_2:49419331-49419350 None:intergenic 25.0%
!! ACAATAAAACAGTTTGAAAC+AGG - chr3_2:49419332-49419351 None:intergenic 25.0%
!! TTTAAGATCAGTTTGAAACA+GGG - chr3_2:49419468-49419487 None:intergenic 25.0%
!! ATTTAAGATCAGTTTGAAAC+AGG - chr3_2:49419469-49419488 None:intergenic 25.0%
! TATAATGTGATAATCACCAA+AGG - chr3_2:49419857-49419876 None:intergenic 25.0%
!! TTTGGTGATTATCACATTAT+AGG + chr3_2:49419856-49419875 Msa0409080:intron 25.0%
!! TCATGTGTAAAACCATATTT+TGG + chr3_2:49420476-49420495 Msa0409080:intron 25.0%
!! TCAACTTTTAAGCCAAAATA+TGG - chr3_2:49420491-49420510 None:intergenic 25.0%
! GTCCAAAAAAAATCAAATAG+CGG + chr3_2:49420894-49420913 Msa0409080:intron 25.0%
!! GAAAAATGTGTTTCTTTTGT+TGG + chr3_2:49421200-49421219 Msa0409080:intron 25.0%
!! ATTGGCTTACATATATGTAT+TGG + chr3_2:49421249-49421268 Msa0409080:intron 25.0%
! TTTGGAAGAAAAATATCAAG+TGG + chr3_2:49421358-49421377 Msa0409080:three_prime_UTR 25.0%
!!! TGATAAGTGAAAAGCATTTT+GGG - chr3_2:49421607-49421626 None:intergenic 25.0%
!!! ATGATAAGTGAAAAGCATTT+TGG - chr3_2:49421608-49421627 None:intergenic 25.0%
!! AAAATGCTTTTCACTTATCA+TGG + chr3_2:49421607-49421626 Msa0409080:three_prime_UTR 25.0%
! ATGTCTTATATTTGCATCTT+TGG + chr3_2:49421631-49421650 Msa0409080:three_prime_UTR 25.0%
!!! ATATTTGCATCTTTGGTTTT+TGG + chr3_2:49421638-49421657 Msa0409080:three_prime_UTR 25.0%
! AATGATTAAAAGACCATCTT+TGG - chr3_2:49421773-49421792 None:intergenic 25.0%
CTTTCTTACTTGTACTTCTT+TGG + chr3_2:49416768-49416787 Msa0409080:five_prime_UTR 30.0%
!! GTTTTTCTTCTTGTTGTCAA+AGG - chr3_2:49417010-49417029 None:intergenic 30.0%
CAACAAGAAGAAAAACAACA+AGG + chr3_2:49417014-49417033 Msa0409080:CDS 30.0%
TATTGTTGTGATGTGTTTGT+TGG + chr3_2:49417254-49417273 Msa0409080:intron 30.0%
ATGATTGTTATGTGAACAAG+AGG + chr3_2:49417316-49417335 Msa0409080:intron 30.0%
TGATTGTTATGTGAACAAGA+GGG + chr3_2:49417317-49417336 Msa0409080:intron 30.0%
CACTATACATATACAACACA+TGG - chr3_2:49417451-49417470 None:intergenic 30.0%
AGTGTCTGATACACATAAAA+AGG + chr3_2:49417467-49417486 Msa0409080:intron 30.0%
GTGTCTGATACACATAAAAA+GGG + chr3_2:49417468-49417487 Msa0409080:intron 30.0%
TTGATATATCTGCAAAATGC+AGG + chr3_2:49417779-49417798 Msa0409080:intron 30.0%
! TGTTTGGTTTAAATTGTGGA+TGG + chr3_2:49417871-49417890 Msa0409080:intron 30.0%
ATGGAGAAAATTGATTGTAG+AGG + chr3_2:49417890-49417909 Msa0409080:intron 30.0%
!!! AACACATAAACTGCTTTTTG+AGG + chr3_2:49418085-49418104 Msa0409080:intron 30.0%
TTTCGACAAATTGTCTTGAT+CGG - chr3_2:49418629-49418648 None:intergenic 30.0%
ATCTTATCAACCATCTCATT+TGG + chr3_2:49418666-49418685 Msa0409080:intron 30.0%
!!! TAACGTGATTTTTTCGTTTC+TGG + chr3_2:49418920-49418939 Msa0409080:intron 30.0%
!!! TTTTTCGTTTCTGGTTTGAA+TGG + chr3_2:49418929-49418948 Msa0409080:intron 30.0%
!! ACTGTTTTATTGTGAACTGA+AGG + chr3_2:49419339-49419358 Msa0409080:intron 30.0%
ATGCTTTCTTATTGATGTAC+TGG + chr3_2:49419381-49419400 Msa0409080:intron 30.0%
TATGCAAAATTGAATGCCAA+TGG - chr3_2:49419684-49419703 None:intergenic 30.0%
TTTAATGCATGCTAAATGCA+AGG + chr3_2:49419972-49419991 Msa0409080:intron 30.0%
TTAATGCATGCTAAATGCAA+GGG + chr3_2:49419973-49419992 Msa0409080:intron 30.0%
! TTAGTTCTTACATGGTGTTA+AGG - chr3_2:49420070-49420089 None:intergenic 30.0%
TTCTAAGTTCTCACTTCTTA+GGG - chr3_2:49420110-49420129 None:intergenic 30.0%
TTTCTAAGTTCTCACTTCTT+AGG - chr3_2:49420111-49420130 None:intergenic 30.0%
GTGAGAACTTAGAAATGATT+AGG + chr3_2:49420116-49420135 Msa0409080:intron 30.0%
CAATGTATACATATCTGCAT+TGG - chr3_2:49420153-49420172 None:intergenic 30.0%
! AAAATTTGGGATATAAGAGG+AGG + chr3_2:49420214-49420233 Msa0409080:intron 30.0%
AGGATTGTGTAAAATCAGTT+TGG + chr3_2:49420234-49420253 Msa0409080:intron 30.0%
GGATTGTGTAAAATCAGTTT+GGG + chr3_2:49420235-49420254 Msa0409080:intron 30.0%
GGGATAAAAAGTAAGCAATA+TGG + chr3_2:49420255-49420274 Msa0409080:intron 30.0%
AAAATGAAAACAGAACAGAG+AGG - chr3_2:49420657-49420676 None:intergenic 30.0%
AGAGAAATAAGCAAAACAGA+GGG - chr3_2:49420722-49420741 None:intergenic 30.0%
!!! AGCCGCTATTTGATTTTTTT+TGG - chr3_2:49420899-49420918 None:intergenic 30.0%
TACCCATTTAGTATTAAGTG+TGG + chr3_2:49421031-49421050 Msa0409080:intron 30.0%
GACCACACTTAATACTAAAT+GGG - chr3_2:49421036-49421055 None:intergenic 30.0%
TGACCACACTTAATACTAAA+TGG - chr3_2:49421037-49421056 None:intergenic 30.0%
GTCAAATAACAGCTATAGTA+CGG + chr3_2:49421053-49421072 Msa0409080:intron 30.0%
TAGTCAATTGCGGAAAATAA+TGG - chr3_2:49421102-49421121 None:intergenic 30.0%
! AATTACAAAGACTTGGTTCA+TGG - chr3_2:49421388-49421407 None:intergenic 30.0%
ATCCTATATTCACATAGATG+TGG + chr3_2:49421423-49421442 Msa0409080:three_prime_UTR 30.0%
AACCACATCTATGTGAATAT+AGG - chr3_2:49421428-49421447 None:intergenic 30.0%
GCATTATGTGATATGATTTG+AGG + chr3_2:49421531-49421550 Msa0409080:three_prime_UTR 30.0%
TGATTCACTCTTCTTGAACA+AGG + chr3_2:49416729-49416748 Msa0409080:five_prime_UTR 35.0%
ATTTCACCGACAACACAAAA+TGG + chr3_2:49416870-49416889 Msa0409080:exon 35.0%
TTCGAAAATGGGAGAAGAAA+TGG + chr3_2:49416965-49416984 Msa0409080:CDS 35.0%
TCGAAAATGGGAGAAGAAAT+GGG + chr3_2:49416966-49416985 Msa0409080:CDS 35.0%
! TTCTTGTTGTCAAAGGAAGA+AGG - chr3_2:49417003-49417022 None:intergenic 35.0%
GTATAACGAAACTTCCTTCT+GGG - chr3_2:49417129-49417148 None:intergenic 35.0%
AGTATAACGAAACTTCCTTC+TGG - chr3_2:49417130-49417149 None:intergenic 35.0%
TATAAAGCACATATGCTCCT+TGG + chr3_2:49417414-49417433 Msa0409080:intron 35.0%
TTCTCAAATTAGACATGTCC+CGG + chr3_2:49417715-49417734 Msa0409080:intron 35.0%
ATGAGCTATGAAGCAATACA+CGG - chr3_2:49417744-49417763 None:intergenic 35.0%
CTGCAAAATGCAGGAAAATT+CGG + chr3_2:49417788-49417807 Msa0409080:intron 35.0%
!! ATAGTTCTAAATCGCACTCA+TGG - chr3_2:49417852-49417871 None:intergenic 35.0%
! GTGCGATTTAGAACTATGTT+TGG + chr3_2:49417855-49417874 Msa0409080:intron 35.0%
GAGAAAATTGATTGTAGAGG+TGG + chr3_2:49417893-49417912 Msa0409080:intron 35.0%
! CAAATCAATTTTTGTACCCG+CGG + chr3_2:49418057-49418076 Msa0409080:intron 35.0%
! AGTTTATGTGTTTAGTTCCG+CGG - chr3_2:49418077-49418096 None:intergenic 35.0%
! TTTTCTTCATGCCTCTTTAG+TGG + chr3_2:49418156-49418175 Msa0409080:intron 35.0%
TTTCTTCATGCCTCTTTAGT+GGG + chr3_2:49418157-49418176 Msa0409080:intron 35.0%
TTGTCTTCAATTCATTAGGG+TGG + chr3_2:49418246-49418265 Msa0409080:intron 35.0%
TTTAGTCCATTAGATGGAGT+GGG - chr3_2:49418373-49418392 None:intergenic 35.0%
!! TTGGTTGTTGACTTGTTGTT+GGG + chr3_2:49418395-49418414 Msa0409080:intron 35.0%
GTATATGTCAGTGTTGTAAC+AGG + chr3_2:49418487-49418506 Msa0409080:intron 35.0%
!!! ATTTCGTGTGGTTTTGTATG+TGG + chr3_2:49418549-49418568 Msa0409080:intron 35.0%
!!! TTTCGTGTGGTTTTGTATGT+GGG + chr3_2:49418550-49418569 Msa0409080:intron 35.0%
TTCGACAAATTGTCTTGATC+GGG - chr3_2:49418628-49418647 None:intergenic 35.0%
ACAGACAAATGTGAATCATG+AGG + chr3_2:49418847-49418866 Msa0409080:CDS 35.0%
!!! TGAAGTTTTAGAGGACACAA+AGG + chr3_2:49418892-49418911 Msa0409080:CDS 35.0%
GAAAGTGAGAACAAGACTTT+AGG + chr3_2:49418988-49419007 Msa0409080:intron 35.0%
! AAAAGTATGTATCGCATACC+CGG + chr3_2:49419283-49419302 Msa0409080:intron 35.0%
! AAAAGTACATATCGCATACC+CGG + chr3_2:49419420-49419439 Msa0409080:intron 35.0%
AAACAGGGATGTATAGGTAT+GGG - chr3_2:49419453-49419472 None:intergenic 35.0%
! AGTTTGAAACAGGGATGTAT+AGG - chr3_2:49419459-49419478 None:intergenic 35.0%
!! CGATTTTCAAGAGTATGAAG+CGG + chr3_2:49419574-49419593 Msa0409080:intron 35.0%
!! TGTATCATAGAAAGTACTGC+TGG + chr3_2:49419606-49419625 Msa0409080:intron 35.0%
CAAAATTGAATGCCAATGGA+TGG - chr3_2:49419680-49419699 None:intergenic 35.0%
ACGACACAGATATATTCACT+TGG - chr3_2:49419731-49419750 None:intergenic 35.0%
AAGTTAATTTCTGTGTTGCC+AGG + chr3_2:49419775-49419794 Msa0409080:intron 35.0%
TCTAATACAAACTGATAGCC+AGG - chr3_2:49419808-49419827 None:intergenic 35.0%
AAGGCAAGAACATATTCCTT+TGG + chr3_2:49419838-49419857 Msa0409080:intron 35.0%
! AGCAGTTCTTAGTTCTTACA+TGG - chr3_2:49420078-49420097 None:intergenic 35.0%
TTTAGTCAGAGTTGTCAACT+AGG + chr3_2:49420278-49420297 Msa0409080:intron 35.0%
TAAAAGTTGAGACGTTTGAG+TGG + chr3_2:49420501-49420520 Msa0409080:intron 35.0%
AAAGATGTTCTCAGCATTCA+CGG - chr3_2:49420571-49420590 None:intergenic 35.0%
GAGAGAAATAAGCAAAACAG+AGG - chr3_2:49420723-49420742 None:intergenic 35.0%
!! TATCCCATTATCCCACTTTT+GGG + chr3_2:49420918-49420937 Msa0409080:intron 35.0%
GTCAATTCCAAATAACTGTG+TGG - chr3_2:49420953-49420972 None:intergenic 35.0%
! TTATTTGGAATTGACTGCCT+AGG + chr3_2:49420958-49420977 Msa0409080:intron 35.0%
AACTAGCACTATAGTGAAGT+AGG + chr3_2:49420986-49421005 Msa0409080:intron 35.0%
!! CATATATGTATTGGTGTTGC+AGG + chr3_2:49421258-49421277 Msa0409080:intron 35.0%
GGATTCAAACATGAATGAGT+TGG + chr3_2:49421279-49421298 Msa0409080:intron 35.0%
ATCTTAGTTTCGACTTCCAA+GGG + chr3_2:49421302-49421321 Msa0409080:CDS 35.0%
TTCCAAATGATCATCACTTC+TGG - chr3_2:49421345-49421364 None:intergenic 35.0%
GGAAGAAAAATATCAAGTGG+TGG + chr3_2:49421361-49421380 Msa0409080:three_prime_UTR 35.0%
ACTACTACTGTCTACACTAT+AGG - chr3_2:49421567-49421586 None:intergenic 35.0%
AGACAGTAGTAGTATATGTG+AGG + chr3_2:49421674-49421693 Msa0409080:three_prime_UTR 35.0%
GACAGTAGTAGTATATGTGA+GGG + chr3_2:49421675-49421694 Msa0409080:three_prime_UTR 35.0%
ACAGTAGTAGTATATGTGAG+GGG + chr3_2:49421676-49421695 Msa0409080:three_prime_UTR 35.0%
GTCGGTGAAATTGAATGGAA+TGG - chr3_2:49416861-49416880 None:intergenic 40.0%
GTGTTGTCGGTGAAATTGAA+TGG - chr3_2:49416866-49416885 None:intergenic 40.0%
! CTGTCTCCATTTTGTGTTGT+CGG - chr3_2:49416879-49416898 None:intergenic 40.0%
ACAACACAAAATGGAGACAG+TGG + chr3_2:49416879-49416898 Msa0409080:exon 40.0%
CAACACAAAATGGAGACAGT+GGG + chr3_2:49416880-49416899 Msa0409080:exon 40.0%
TCAATGGTCCTGTTCGAAAA+TGG + chr3_2:49416953-49416972 Msa0409080:CDS 40.0%
CAATGGTCCTGTTCGAAAAT+GGG + chr3_2:49416954-49416973 Msa0409080:CDS 40.0%
! TTCTTCTCCCATTTTCGAAC+AGG - chr3_2:49416964-49416983 None:intergenic 40.0%
GCAGAAGAAGAGTTTGTAAC+CGG - chr3_2:49417084-49417103 None:intergenic 40.0%
TACAAACTCTTCTTCTGCTG+AGG + chr3_2:49417086-49417105 Msa0409080:CDS 40.0%
TGGGTTTGTGGAATTAAGAG+AGG + chr3_2:49417291-49417310 Msa0409080:intron 40.0%
TGTTATGTGAACAAGAGGGT+TGG + chr3_2:49417321-49417340 Msa0409080:intron 40.0%
GTTATGTGAACAAGAGGGTT+GGG + chr3_2:49417322-49417341 Msa0409080:intron 40.0%
TTATGTGAACAAGAGGGTTG+GGG + chr3_2:49417323-49417342 Msa0409080:intron 40.0%
GTATTGCAATGTATGCCTGT+AGG + chr3_2:49417358-49417377 Msa0409080:intron 40.0%
! TGTATGCCTGTAGGTTGAAT+TGG + chr3_2:49417367-49417386 Msa0409080:intron 40.0%
! GTATGCCTGTAGGTTGAATT+GGG + chr3_2:49417368-49417387 Msa0409080:intron 40.0%
CAAATCCCAATTCAACCTAC+AGG - chr3_2:49417376-49417395 None:intergenic 40.0%
! GTAGGTTGAATTGGGATTTG+TGG + chr3_2:49417376-49417395 Msa0409080:intron 40.0%
GGATTTGTGGTATTAACTCG+TGG + chr3_2:49417389-49417408 Msa0409080:intron 40.0%
CACATATGCTCCTTGGATTA+GGG + chr3_2:49417421-49417440 Msa0409080:intron 40.0%
! ACATATGCTCCTTGGATTAG+GGG + chr3_2:49417422-49417441 Msa0409080:intron 40.0%
TACACATAAAAAGGGCAACC+CGG + chr3_2:49417476-49417495 Msa0409080:intron 40.0%
TCATGTGACTGAAAGGTTAC+GGG - chr3_2:49417618-49417637 None:intergenic 40.0%
GTCATGTGACTGAAAGGTTA+CGG - chr3_2:49417619-49417638 None:intergenic 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr3_2:49417625-49417644 None:intergenic 40.0%
ATGTGTATCGGACACTATGA+GGG - chr3_2:49417671-49417690 None:intergenic 40.0%
! GTTTATGTGTTTAGTTCCGC+GGG - chr3_2:49418076-49418095 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAAG+AGG - chr3_2:49418170-49418189 None:intergenic 40.0%
CTCTTTAGTGGGATAAAGCT+TGG + chr3_2:49418168-49418187 Msa0409080:intron 40.0%
CTTTAGTCCATTAGATGGAG+TGG - chr3_2:49418374-49418393 None:intergenic 40.0%
! CCAAGCTTTAGTCCATTAGA+TGG - chr3_2:49418379-49418398 None:intergenic 40.0%
!! CCATCTAATGGACTAAAGCT+TGG + chr3_2:49418376-49418395 Msa0409080:intron 40.0%
!! CTTGGTTGTTGACTTGTTGT+TGG + chr3_2:49418394-49418413 Msa0409080:intron 40.0%
!! ACTTGTTGTTGGGTAGAAAC+AGG + chr3_2:49418405-49418424 Msa0409080:intron 40.0%
!! CTTGTTGTTGGGTAGAAACA+GGG + chr3_2:49418406-49418425 Msa0409080:intron 40.0%
GGTTATACCCTATGTAACAC+CGG + chr3_2:49418427-49418446 Msa0409080:intron 40.0%
!! TAAAGTGCCGGTGTTACATA+GGG - chr3_2:49418437-49418456 None:intergenic 40.0%
! ATGCCTTCAATCTAAAGTGC+CGG - chr3_2:49418449-49418468 None:intergenic 40.0%
TGTCTGTGTTAGTGCTTCAT+AGG + chr3_2:49418516-49418535 Msa0409080:intron 40.0%
GGTTGTCACATTATTTCGTG+TGG + chr3_2:49418537-49418556 Msa0409080:intron 40.0%
!!! TTCGTGTGGTTTTGTATGTG+GGG + chr3_2:49418551-49418570 Msa0409080:intron 40.0%
GTGGATCAGTTAAGGACTAT+AGG + chr3_2:49418573-49418592 Msa0409080:intron 40.0%
GGACTATAGGTTTCTTTACC+TGG + chr3_2:49418586-49418605 Msa0409080:intron 40.0%
AATGTGAATCATGAGGTGCA+TGG + chr3_2:49418854-49418873 Msa0409080:CDS 40.0%
ATGTGAATCATGAGGTGCAT+GGG + chr3_2:49418855-49418874 Msa0409080:CDS 40.0%
GCCTCATGAGTTCTTGTAAA+CGG + chr3_2:49419030-49419049 Msa0409080:intron 40.0%
ACCGTTTACAAGAACTCATG+AGG - chr3_2:49419034-49419053 None:intergenic 40.0%
AAACGGTGAAGTACACTTAC+TGG + chr3_2:49419047-49419066 Msa0409080:intron 40.0%
AACGGTGAAGTACACTTACT+GGG + chr3_2:49419048-49419067 Msa0409080:intron 40.0%
ACACTTACTGGGTACATATC+CGG + chr3_2:49419059-49419078 Msa0409080:intron 40.0%
TCCATTGCGAGTGAAATTCA+TGG + chr3_2:49419123-49419142 Msa0409080:intron 40.0%
! AGTTTGAAACAGGGATGCAT+AGG - chr3_2:49419322-49419341 None:intergenic 40.0%
GAAACAGGGATGTATAGGTA+TGG - chr3_2:49419454-49419473 None:intergenic 40.0%
TGTACAAGGCATGATCTAGT+AGG - chr3_2:49419644-49419663 None:intergenic 40.0%
TAAATGCAAGGGTTGTGGTA+TGG + chr3_2:49419984-49420003 Msa0409080:intron 40.0%
GTCAACTAGGTAGTCAATTG+CGG + chr3_2:49420291-49420310 Msa0409080:intron 40.0%
TCAACTAGGTAGTCAATTGC+GGG + chr3_2:49420292-49420311 Msa0409080:intron 40.0%
! CTATCCCATTATCCCACTTT+TGG + chr3_2:49420917-49420936 Msa0409080:intron 40.0%
GAACCCAAAAGTGGGATAAT+GGG - chr3_2:49420924-49420943 None:intergenic 40.0%
ATAGTGCTAGTTGACAACCT+AGG - chr3_2:49420978-49420997 None:intergenic 40.0%
CTTGTTAAAACTCCGCTACA+GGG - chr3_2:49421079-49421098 None:intergenic 40.0%
CTGAACAGTGTAGTCAATTG+CGG - chr3_2:49421112-49421131 None:intergenic 40.0%
GATCTTAGTTTCGACTTCCA+AGG + chr3_2:49421301-49421320 Msa0409080:CDS 40.0%
AGCCAGAAGTGATGATCATT+TGG + chr3_2:49421340-49421359 Msa0409080:exon 40.0%
TTTACATCCCTCTGTACTAG+CGG + chr3_2:49421722-49421741 Msa0409080:three_prime_UTR 40.0%
CTCGTTTACTTCTTCGTCGT+TGG + chr3_2:49417055-49417074 Msa0409080:CDS 45.0%
TAACGAAACTTCCTTCTGGG+TGG - chr3_2:49417126-49417145 None:intergenic 45.0%
GCACATATGCTCCTTGGATT+AGG + chr3_2:49417420-49417439 Msa0409080:intron 45.0%
! GAGAAGGTTCCCACCATTTT+TGG + chr3_2:49417529-49417548 Msa0409080:intron 45.0%
CAATGTGCACGCACCAAAAA+TGG - chr3_2:49417545-49417564 None:intergenic 45.0%
CAACTTTACCAGTTGCGTCA+AGG + chr3_2:49417641-49417660 Msa0409080:intron 45.0%
TGTGTATCGGACACTATGAG+GGG - chr3_2:49417670-49417689 None:intergenic 45.0%
CATGTGTATCGGACACTATG+AGG - chr3_2:49417672-49417691 None:intergenic 45.0%
ATGAAGCAATACACGGACAC+CGG - chr3_2:49417737-49417756 None:intergenic 45.0%
CACTCATGGAACTGCAATTG+TGG - chr3_2:49417838-49417857 None:intergenic 45.0%
!! CTAAAGTGCCGGTGTTACAT+AGG - chr3_2:49418438-49418457 None:intergenic 45.0%
ACACCGGCACTTTAGATTGA+AGG + chr3_2:49418443-49418462 Msa0409080:intron 45.0%
TATGTGGGGTGGATCAGTTA+AGG + chr3_2:49418565-49418584 Msa0409080:intron 45.0%
! GGAGTTCTTTTCACAACTCC+AGG - chr3_2:49418607-49418626 None:intergenic 45.0%
GCGTAACACACCAAATGAGA+TGG - chr3_2:49418679-49418698 None:intergenic 45.0%
TGCGCTGGAAGAACAGAAAA+AGG + chr3_2:49418763-49418782 Msa0409080:CDS 45.0%
GCGCTGGAAGAACAGAAAAA+GGG + chr3_2:49418764-49418783 Msa0409080:CDS 45.0%
CGCTGGAAGAACAGAAAAAG+GGG + chr3_2:49418765-49418784 Msa0409080:CDS 45.0%
GCTGGAAGAACAGAAAAAGG+GGG + chr3_2:49418766-49418785 Msa0409080:CDS 45.0%
TTGTCTGTCTAGCTGTCACT+TGG - chr3_2:49418835-49418854 None:intergenic 45.0%
GCCATGAATTTCACTCGCAA+TGG - chr3_2:49419127-49419146 None:intergenic 45.0%
AAACAGGGATGCATAGGTAC+GGG - chr3_2:49419316-49419335 None:intergenic 45.0%
GAAACAGGGATGCATAGGTA+CGG - chr3_2:49419317-49419336 None:intergenic 45.0%
TATAGGTATGGGTACGGTAC+CGG - chr3_2:49419442-49419461 None:intergenic 45.0%
GGGATGTATAGGTATGGGTA+CGG - chr3_2:49419448-49419467 None:intergenic 45.0%
AGTATGCTACCATGTGGCTA+GGG - chr3_2:49419916-49419935 None:intergenic 45.0%
AAGTATGCTACCATGTGGCT+AGG - chr3_2:49419917-49419936 None:intergenic 45.0%
! GTGGAAAGTATGCTACCATG+TGG - chr3_2:49419922-49419941 None:intergenic 45.0%
CATGCTAAATGCAAGGGTTG+TGG + chr3_2:49419979-49419998 Msa0409080:intron 45.0%
CTCTGTAAACATGTCTGACG+CGG - chr3_2:49420400-49420419 None:intergenic 45.0%
AGACGTTTGAGTGGTATGCT+GGG + chr3_2:49420510-49420529 Msa0409080:intron 45.0%
CGGAGTAGACCATATAAGCA+GGG - chr3_2:49420551-49420570 None:intergenic 45.0%
ACGGAGTAGACCATATAAGC+AGG - chr3_2:49420552-49420571 None:intergenic 45.0%
CGAACCCAAAAGTGGGATAA+TGG - chr3_2:49420925-49420944 None:intergenic 45.0%
! GCTTGTTAAAACTCCGCTAC+AGG - chr3_2:49421080-49421099 None:intergenic 45.0%
AGTTTCGACTTCCAAGGGAA+CGG + chr3_2:49421307-49421326 Msa0409080:CDS 45.0%
TGAGGGGATAGTGTCTCAAA+GGG + chr3_2:49421692-49421711 Msa0409080:three_prime_UTR 45.0%
TCAAACTCCGCTAGTACAGA+GGG - chr3_2:49421732-49421751 None:intergenic 45.0%
TTCAAACTCCGCTAGTACAG+AGG - chr3_2:49421733-49421752 None:intergenic 45.0%
TACTAGCGGAGTTTGAACTC+AGG + chr3_2:49421736-49421755 Msa0409080:three_prime_UTR 45.0%
!! GGATCTCTGAAGTCCAAAGA+TGG + chr3_2:49421757-49421776 Msa0409080:three_prime_UTR 45.0%
!! ATATATAATGATATATTATT+TGG + chr3_2:49419171-49419190 Msa0409080:intron 5.0%
!! TATATAATGATATATTATTT+GGG + chr3_2:49419172-49419191 Msa0409080:intron 5.0%
! ACAGTGGGTTCTACGAGGTT+GGG + chr3_2:49416895-49416914 Msa0409080:CDS 50.0%
! GGTAGAGCATCTTCACGCTA+CGG + chr3_2:49416916-49416935 Msa0409080:CDS 50.0%
ACTTCTTCGTCGTTGGACTC+CGG + chr3_2:49417062-49417081 Msa0409080:CDS 50.0%
! CAAGAGGGTTGGGGTTGATT+TGG + chr3_2:49417332-49417351 Msa0409080:intron 50.0%
ACATGGACACCCCTAATCCA+AGG - chr3_2:49417434-49417453 None:intergenic 50.0%
CTAAAGCTTCCGCATACGCA+GGG + chr3_2:49417503-49417522 Msa0409080:intron 50.0%
GTGCACGCACCAAAAATGGT+GGG - chr3_2:49417541-49417560 None:intergenic 50.0%
TGTGCACGCACCAAAAATGG+TGG - chr3_2:49417542-49417561 None:intergenic 50.0%
TGAAGCAATACACGGACACC+GGG - chr3_2:49417736-49417755 None:intergenic 50.0%
GGGTAACCCACTCCATCTAA+TGG + chr3_2:49418364-49418383 Msa0409080:intron 50.0%
!!! GTGTGGTTTTGTATGTGGGG+TGG + chr3_2:49418554-49418573 Msa0409080:intron 50.0%
CAGCGCAGCAATCTGTATCA+TGG - chr3_2:49418750-49418769 None:intergenic 50.0%
CATGATACAGATTGCTGCGC+TGG + chr3_2:49418748-49418767 Msa0409080:intron 50.0%
AGAACAGAAAAAGGGGGCTG+TGG + chr3_2:49418772-49418791 Msa0409080:CDS 50.0%
GAAAAAGGGGGCTGTGGAAA+AGG + chr3_2:49418778-49418797 Msa0409080:CDS 50.0%
GTACATATCCGGTACGCGTA+TGG + chr3_2:49419070-49419089 Msa0409080:intron 50.0%
CACAAGTACCATACGCGTAC+CGG - chr3_2:49419081-49419100 None:intergenic 50.0%
ATAGGTATGGGTACGGTACC+GGG - chr3_2:49419441-49419460 None:intergenic 50.0%
GTTACACGTGGCACTGTACA+AGG - chr3_2:49419658-49419677 None:intergenic 50.0%
TGCCACGTGTAACCATCCAT+TGG + chr3_2:49419665-49419684 Msa0409080:intron 50.0%
TGCCAATGGATGGTTACACG+TGG - chr3_2:49419670-49419689 None:intergenic 50.0%
ACTTCTTTCCCCTAGCCACA+TGG + chr3_2:49419904-49419923 Msa0409080:intron 50.0%
GTATGCTACCATGTGGCTAG+GGG - chr3_2:49419915-49419934 None:intergenic 50.0%
TTACAGAGCAGACAGCGTGT+TGG + chr3_2:49420412-49420431 Msa0409080:CDS 50.0%
GAGACGTTTGAGTGGTATGC+TGG + chr3_2:49420509-49420528 Msa0409080:intron 50.0%
GCAAGCAAGCCCTGCTTATA+TGG + chr3_2:49420539-49420558 Msa0409080:intron 50.0%
CGCTGCTCCACACAGTTATT+TGG + chr3_2:49420943-49420962 Msa0409080:intron 50.0%
! TGTTTTCACCACCGTTCCCT+TGG - chr3_2:49421321-49421340 None:intergenic 50.0%
GTGAGGGGATAGTGTCTCAA+AGG + chr3_2:49421691-49421710 Msa0409080:three_prime_UTR 50.0%
! TGGAGACAGTGGGTTCTACG+AGG + chr3_2:49416890-49416909 Msa0409080:CDS 55.0%
! GACAGTGGGTTCTACGAGGT+TGG + chr3_2:49416894-49416913 Msa0409080:CDS 55.0%
ACAGGACCATTGAACACCGC+AGG - chr3_2:49416946-49416965 None:intergenic 55.0%
TTTCCGATGAGCCACCCAGA+AGG + chr3_2:49417112-49417131 Msa0409080:CDS 55.0%
CTTCCTTCTGGGTGGCTCAT+CGG - chr3_2:49417118-49417137 None:intergenic 55.0%
! ATGCGGAAGCTTTAGCGCAC+CGG - chr3_2:49417498-49417517 None:intergenic 55.0%
GCTAAAGCTTCCGCATACGC+AGG + chr3_2:49417502-49417521 Msa0409080:intron 55.0%
CTTCTCGAACCCTGCGTATG+CGG - chr3_2:49417515-49417534 None:intergenic 55.0%
AGGGGTAACCTTGACGCAAC+TGG - chr3_2:49417652-49417671 None:intergenic 55.0%
! ATAGGTACGGGTAGGGTACC+GGG - chr3_2:49419304-49419323 None:intergenic 55.0%
CATAGGTACGGGTAGGGTAC+CGG - chr3_2:49419305-49419324 None:intergenic 55.0%
GGGATGCATAGGTACGGGTA+GGG - chr3_2:49419311-49419330 None:intergenic 55.0%
AGGGATGCATAGGTACGGGT+AGG - chr3_2:49419312-49419331 None:intergenic 55.0%
TTTCTGTGTTGCCAGGCCTC+TGG + chr3_2:49419782-49419801 Msa0409080:intron 55.0%
CAAACTGATAGCCAGGCCAG+AGG - chr3_2:49419801-49419820 None:intergenic 55.0%
GGGAAATAGTGCCGCAATCG+CGG + chr3_2:49420312-49420331 Msa0409080:intron 55.0%
CCTGTGATACGTGACACGAC+AGG - chr3_2:49420372-49420391 None:intergenic 55.0%
CCTGTCGTGTCACGTATCAC+AGG + chr3_2:49420369-49420388 Msa0409080:CDS 55.0%
CGTGTCACGTATCACAGGAG+CGG + chr3_2:49420374-49420393 Msa0409080:CDS 55.0%
ATCGCTTACGAGATGCGCTG+CGG - chr3_2:49420448-49420467 None:intergenic 55.0%
GGAGCAGCGAACCCAAAAGT+GGG - chr3_2:49420932-49420951 None:intergenic 55.0%
TGGAGCAGCGAACCCAAAAG+TGG - chr3_2:49420933-49420952 None:intergenic 55.0%
GCTATAGTACGGCCCTGTAG+CGG + chr3_2:49421064-49421083 Msa0409080:intron 55.0%
TTCGACTTCCAAGGGAACGG+TGG + chr3_2:49421310-49421329 Msa0409080:CDS 55.0%
TTCACGCTACGGTGCACCTG+CGG + chr3_2:49416927-49416946 Msa0409080:CDS 60.0%
GGTGCACCTGCGGTGTTCAA+TGG + chr3_2:49416937-49416956 Msa0409080:CDS 60.0%
! TGCGGAAGCTTTAGCGCACC+GGG - chr3_2:49417497-49417516 None:intergenic 60.0%
CGCATACGCAGGGTTCGAGA+AGG + chr3_2:49417513-49417532 Msa0409080:intron 60.0%
! CGGCTATTGGCTGCCACTGT+GGG + chr3_2:49420345-49420364 Msa0409080:CDS 60.0%
TGACACGACAGGTCCCACAG+TGG - chr3_2:49420361-49420380 None:intergenic 60.0%
TGATAGCCAGGCCAGAGGCC+TGG - chr3_2:49419796-49419815 None:intergenic 65.0%
GTGCCGCAATCGCGGCAATG+CGG + chr3_2:49420320-49420339 Msa0409080:intron 65.0%
GCTCCGCATTGCCGCGATTG+CGG - chr3_2:49420326-49420345 None:intergenic 65.0%
GCAATCGCGGCAATGCGGAG+CGG + chr3_2:49420325-49420344 Msa0409080:CDS 65.0%
CGGCAATGCGGAGCGGCTAT+TGG + chr3_2:49420332-49420351 Msa0409080:CDS 65.0%
! GCGGCTATTGGCTGCCACTG+TGG + chr3_2:49420344-49420363 Msa0409080:CDS 65.0%
GCTTACGAGATGCGCTGCGG+CGG - chr3_2:49420445-49420464 None:intergenic 65.0%
GTGTTGCCAGGCCTCTGGCC+TGG + chr3_2:49419787-49419806 Msa0409080:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 49416684 49421797 49416684 ID=Msa0409080;Name=Msa0409080
chr3_2 mRNA 49416684 49421797 49416684 ID=Msa0409080-mRNA-1;Parent=Msa0409080;Name=Msa0409080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=205|0.33|0.75|0.75|1|1|4|446|209
chr3_2 exon 49416684 49417152 49416684 ID=Msa0409080-mRNA-1:exon:9681;Parent=Msa0409080-mRNA-1
chr3_2 exon 49418758 49418913 49418758 ID=Msa0409080-mRNA-1:exon:9682;Parent=Msa0409080-mRNA-1
chr3_2 exon 49420321 49420458 49420321 ID=Msa0409080-mRNA-1:exon:9683;Parent=Msa0409080-mRNA-1
chr3_2 exon 49421280 49421797 49421280 ID=Msa0409080-mRNA-1:exon:9684;Parent=Msa0409080-mRNA-1
chr3_2 five_prime_UTR 49416684 49416888 49416684 ID=Msa0409080-mRNA-1:five_prime_utr;Parent=Msa0409080-mRNA-1
chr3_2 CDS 49416889 49417152 49416889 ID=Msa0409080-mRNA-1:cds;Parent=Msa0409080-mRNA-1
chr3_2 CDS 49418758 49418913 49418758 ID=Msa0409080-mRNA-1:cds;Parent=Msa0409080-mRNA-1
chr3_2 CDS 49420321 49420458 49420321 ID=Msa0409080-mRNA-1:cds;Parent=Msa0409080-mRNA-1
chr3_2 CDS 49421280 49421351 49421280 ID=Msa0409080-mRNA-1:cds;Parent=Msa0409080-mRNA-1
chr3_2 three_prime_UTR 49421352 49421797 49421352 ID=Msa0409080-mRNA-1:three_prime_utr;Parent=Msa0409080-mRNA-1
Gene Sequence

>Msa0409080

ATGGAGACAGTGGGTTCTACGAGGTTGGGTAGAGCATCTTCACGCTACGGTGCACCTGCGGTGTTCAATGGTCCTGTTCGAAAATGGGAGAAGAAATGGGTTCATGTTTCTCCTTCTTCCTTTGACAACAAGAAGAAAAACAACAAGGATAATAGTAACGAGAAATCTCGTTTACTTCTTCGTCGTTGGACTCCGGTTACAAACTCTTCTTCTGCTGAGGATGTTTCCGATGAGCCACCCAGAAGGAAGTTTCGTTATACTCCTATTGCTGCGCTGGAAGAACAGAAAAAGGGGGCTGTGGAAAAGGTTGAACATGAATCTACTACAATCGAGAGTGACCAAGTGACAGCTAGACAGACAAATGTGAATCATGAGGTGCATGGGAAGCTGAATATGAATGAAGTTTTAGAGGACACAAAGTGCCGCAATCGCGGCAATGCGGAGCGGCTATTGGCTGCCACTGTGGGACCTGTCGTGTCACGTATCACAGGAGCGGCCGCGTCAGACATGTTTACAGAGCAGACAGCGTGTTGGTGTTGCACCGCCGCAGCGCATCTCGATTCAAACATGAATGAGTTGGATCTTAGTTTCGACTTCCAAGGGAACGGTGGTGAAAACAGCCAGAAGTGA
Protein sequence

>Msa0409080

METVGSTRLGRASSRYGAPAVFNGPVRKWEKKWVHVSPSSFDNKKKNNKDNSNEKSRLLLRRWTPVTNSSSAEDVSDEPPRRKFRYTPIAALEEQKKGAVEKVEHESTTIESDQVTARQTNVNHEVHGKLNMNEVLEDTKCRNRGNAERLLAATVGPVVSRITGAAASDMFTEQTACWCCTAAAHLDSNMNELDLSFDFQGNGGENSQK*