AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1004500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004500 MtrunA17_Chr7g0214731 98.428 636 10 0 1 636 1 636 0.0 1303
Msa1004500 MtrunA17_Chr7g0241741 41.997 581 311 12 38 612 1 561 1.22e-147 439
Msa1004500 MtrunA17_Chr4g0005901 41.812 574 310 11 44 612 17 571 5.44e-147 438
Msa1004500 MtrunA17_Chr3g0104011 41.516 554 306 7 63 612 24 563 8.70e-143 427
Msa1004500 MtrunA17_Chr8g0375311 38.992 595 339 9 22 612 8 582 3.47e-140 421
Msa1004500 MtrunA17_Chr8g0375291 39.759 581 326 9 30 606 16 576 4.01e-136 410
Msa1004500 MtrunA17_Chr3g0142101 37.801 582 337 8 51 630 26 584 9.71e-134 404
Msa1004500 MtrunA17_Chr3g0142091 37.997 579 336 7 51 627 17 574 4.17e-129 392
Msa1004500 MtrunA17_Chr8g0375321 38.919 555 318 7 62 610 38 577 4.81e-124 379
Msa1004500 MtrunA17_Chr8g0375351 37.871 573 337 7 42 610 23 580 4.98e-124 379
Msa1004500 MtrunA17_Chr8g0375341 38.087 554 328 5 62 612 41 582 6.11e-124 379
Msa1004500 MtrunA17_Chr7g0271221 37.071 553 324 7 63 614 19 548 3.85e-121 372
Msa1004500 MtrunA17_Chr8g0375331 39.060 553 320 7 62 610 25 564 6.05e-121 370
Msa1004500 MtrunA17_Chr7g0261881 36.425 593 354 11 44 633 12 584 1.57e-120 370
Msa1004500 MtrunA17_Chr7g0261811 35.966 595 366 9 44 637 12 592 4.79e-120 369
Msa1004500 MtrunA17_Chr7g0261791 36.535 583 354 9 31 611 1 569 8.78e-119 366
Msa1004500 MtrunA17_Chr1g0187241 35.593 590 356 11 44 630 11 579 2.85e-118 364
Msa1004500 MtrunA17_Chr7g0261771 35.314 606 375 12 34 637 5 595 2.92e-118 365
Msa1004500 MtrunA17_Chr8g0375361 36.752 585 348 8 34 612 13 581 4.92e-118 363
Msa1004500 MtrunA17_Chr1g0193391 35.740 554 332 7 63 615 19 549 6.26e-116 359
Msa1004500 MtrunA17_Chr3g0114501 36.254 582 347 12 38 614 1 563 6.63e-115 355
Msa1004500 MtrunA17_Chr7g0255621 35.185 594 363 10 54 638 10 590 7.46e-114 353
Msa1004500 MtrunA17_Chr5g0422881 35.406 579 354 10 63 634 22 587 2.39e-113 352
Msa1004500 MtrunA17_Chr5g0399061 34.859 568 342 9 62 618 28 578 3.11e-113 351
Msa1004500 MtrunA17_Chr3g0133341 37.004 554 328 10 63 613 16 551 1.24e-111 347
Msa1004500 MtrunA17_Chr5g0439381 36.285 576 333 7 45 615 13 559 5.04e-111 345
Msa1004500 MtrunA17_Chr5g0399071 36.222 577 343 7 60 627 24 584 4.45e-110 343
Msa1004500 MtrunA17_Chr7g0261851 37.696 573 334 11 44 611 13 567 1.37e-109 342
Msa1004500 MtrunA17_Chr4g0056431 36.500 600 345 12 48 626 2 586 1.84e-109 342
Msa1004500 MtrunA17_Chr1g0166711 35.752 565 348 8 51 614 16 566 3.08e-109 341
Msa1004500 MtrunA17_Chr3g0112611 35.009 557 338 11 62 613 33 570 6.67e-109 340
Msa1004500 MtrunA17_Chr7g0214461 35.221 565 338 9 52 610 70 612 7.97e-109 341
Msa1004500 MtrunA17_Chr2g0284701 34.397 564 351 9 63 614 34 590 1.12e-108 340
Msa1004500 MtrunA17_Chr7g0240381 34.336 565 337 11 54 612 22 558 7.06e-108 337
Msa1004500 MtrunA17_Chr1g0213711 35.791 556 328 9 62 610 22 555 8.53e-108 337
Msa1004500 MtrunA17_Chr3g0112671 33.394 554 341 10 62 613 34 561 1.82e-107 336
Msa1004500 MtrunA17_Chr5g0415791 36.572 566 337 9 54 612 27 577 4.27e-107 336
Msa1004500 MtrunA17_Chr1g0166741 34.791 549 338 9 40 588 8 536 7.53e-107 335
Msa1004500 MtrunA17_Chr4g0063591 36.767 563 322 10 60 612 21 559 1.31e-105 331
Msa1004500 MtrunA17_Chr7g0218851 36.445 557 323 11 63 610 48 582 2.04e-105 332
Msa1004500 MtrunA17_Chr7g0217461 36.106 565 347 6 62 621 25 580 6.64e-105 330
Msa1004500 MtrunA17_Chr7g0255601 34.353 556 347 8 63 612 29 572 7.58e-105 330
Msa1004500 MtrunA17_Chr1g0166791 33.392 572 366 9 44 614 9 566 2.22e-104 328
Msa1004500 MtrunA17_Chr4g0008651 32.979 564 354 9 54 613 27 570 7.19e-103 325
Msa1004500 MtrunA17_Chr8g0353031 35.428 573 325 9 62 621 19 559 7.34e-103 324
Msa1004500 MtrunA17_Chr4g0059981 34.722 576 344 11 66 627 36 593 6.59e-101 320
Msa1004500 MtrunA17_Chr1g0166771 34.690 516 319 6 80 595 10 507 3.13e-100 316
Msa1004500 MtrunA17_Chr7g0255611 30.870 609 395 10 35 630 4 599 2.85e-99 315
Msa1004500 MtrunA17_Chr5g0400371 33.813 556 349 8 62 610 113 656 8.80e-99 316
Msa1004500 MtrunA17_Chr4g0059971 34.039 567 333 13 66 612 39 584 1.03e-97 311
Msa1004500 MtrunA17_Chr4g0054891 32.727 605 367 12 16 610 75 649 3.01e-97 312
Msa1004500 MtrunA17_Chr4g0069581 35.081 553 331 13 90 637 15 544 3.62e-97 309
Msa1004500 MtrunA17_Chr8g0362711 34.752 564 336 9 63 612 26 571 1.27e-96 308
Msa1004500 MtrunA17_Chr4g0011471 33.394 554 341 10 68 610 21 557 1.38e-96 308
Msa1004500 MtrunA17_Chr8g0362781 31.317 562 364 8 63 613 32 582 2.04e-96 307
Msa1004500 MtrunA17_Chr8g0379971 34.948 578 344 10 63 614 22 593 2.69e-95 305
Msa1004500 MtrunA17_Chr7g0261661 37.527 461 271 8 177 631 26 475 3.48e-95 301
Msa1004500 MtrunA17_Chr2g0276751 33.217 572 341 12 48 612 26 563 7.03e-95 303
Msa1004500 MtrunA17_Chr4g0014781 33.034 557 330 11 62 611 30 550 6.83e-94 300
Msa1004500 MtrunA17_Chr5g0415961 34.003 597 354 12 31 612 1 572 6.13e-93 298
Msa1004500 MtrunA17_Chr4g0059991 31.703 593 364 12 66 637 27 599 1.05e-90 293
Msa1004500 MtrunA17_Chr4g0014871 32.321 560 341 10 62 616 31 557 1.32e-90 291
Msa1004500 MtrunA17_Chr8g0379991 35.355 577 318 13 82 614 1 566 3.99e-90 291
Msa1004500 MtrunA17_Chr4g0014791 32.562 562 334 10 62 616 30 553 4.84e-90 290
Msa1004500 MtrunA17_Chr8g0390331 35.626 567 315 12 63 609 17 553 2.25e-89 289
Msa1004500 MtrunA17_Chr2g0331481 33.390 587 347 15 65 634 29 588 5.07e-89 290
Msa1004500 MtrunA17_Chr4g0014841 31.362 558 346 9 62 616 30 553 7.62e-89 287
Msa1004500 MtrunA17_Chr2g0331471 33.163 588 351 14 63 634 90 651 1.16e-88 290
Msa1004500 MtrunA17_Chr4g0014801 31.835 556 336 11 63 611 31 550 1.89e-88 286
Msa1004500 MtrunA17_Chr7g0261751 34.623 491 273 9 34 486 5 485 2.98e-87 281
Msa1004500 MtrunA17_Chr1g0157601 33.095 559 350 9 58 609 12 553 7.83e-86 279
Msa1004500 MtrunA17_Chr3g0077151 31.404 570 338 11 51 612 19 543 2.06e-85 277
Msa1004500 MtrunA17_Chr8g0362801 35.619 452 276 7 168 612 18 461 3.92e-82 267
Msa1004500 MtrunA17_Chr2g0331521 31.478 575 365 13 46 609 7 563 6.48e-82 270
Msa1004500 MtrunA17_Chr4g0003761 31.765 595 355 14 61 632 30 596 1.24e-80 266
Msa1004500 MtrunA17_Chr1g0166731 34.205 459 292 5 157 614 14 463 1.48e-80 263
Msa1004500 MtrunA17_Chr4g0011041 28.596 577 371 12 51 610 27 579 4.00e-80 265
Msa1004500 MtrunA17_Chr1g0147631 33.507 576 350 11 63 626 27 581 1.25e-79 263
Msa1004500 MtrunA17_Chr4g0060001 31.228 570 360 14 63 620 31 580 1.61e-79 263
Msa1004500 MtrunA17_Chr3g0082631 34.081 446 272 9 184 615 25 462 4.94e-79 258
Msa1004500 MtrunA17_Chr1g0157611 32.310 554 347 10 65 609 20 554 4.78e-78 258
Msa1004500 MtrunA17_Chr2g0331461 32.297 579 344 15 65 621 29 581 3.31e-76 255
Msa1004500 MtrunA17_Chr2g0331511 31.369 577 353 15 63 621 23 574 5.54e-76 255
Msa1004500 MtrunA17_Chr1g0157621 32.649 536 334 12 82 609 1 517 2.35e-74 249
Msa1004500 MtrunA17_Chr7g0261731 38.418 354 207 7 34 386 5 348 1.30e-73 240
Msa1004500 MtrunA17_Chr4g0014861 32.118 439 272 8 185 616 13 432 2.51e-72 239
Msa1004500 MtrunA17_Chr1g0177591 30.233 559 340 15 63 609 44 564 8.64e-72 242
Msa1004500 MtrunA17_Chr5g0415841 30.172 464 303 8 168 623 18 468 4.59e-69 232
Msa1004500 MtrunA17_Chr7g0240271 27.719 570 387 10 50 609 13 567 3.43e-66 228
Msa1004500 MtrunA17_Chr3g0142111 38.926 298 174 3 51 348 37 326 1.40e-64 216
Msa1004500 MtrunA17_Chr7g0240281 28.647 569 379 10 51 607 14 567 8.31e-64 221
Msa1004500 MtrunA17_Chr1g0177611 31.336 434 270 8 184 609 22 435 9.01e-63 214
Msa1004500 MtrunA17_Chr1g0177631 31.567 434 269 8 184 609 22 435 4.96e-61 210
Msa1004500 MtrunA17_Chr3g0142121 38.194 288 161 5 342 627 11 283 5.05e-60 202
Msa1004500 MtrunA17_Chr7g0240211 28.539 445 299 8 175 609 21 456 6.91e-56 197
Msa1004500 MtrunA17_Chr7g0240181 28.539 445 299 8 175 609 21 456 7.49e-56 197
Msa1004500 MtrunA17_Chr7g0235521 27.928 444 303 7 175 609 21 456 1.04e-54 194
Msa1004500 MtrunA17_Chr7g0240131 28.539 445 299 8 175 609 21 456 1.58e-54 193
Msa1004500 MtrunA17_Chr7g0234151 31.163 430 252 10 185 609 28 418 1.27e-53 189
Msa1004500 MtrunA17_Chr7g0234381 31.860 430 249 10 185 609 28 418 1.38e-53 189
Msa1004500 MtrunA17_Chr7g0240151 27.928 444 285 8 175 609 21 438 2.04e-52 187
Msa1004500 MtrunA17_Chr7g0234181 31.163 430 252 10 185 609 23 413 3.53e-52 185
Msa1004500 MtrunA17_Chr2g0325951 27.061 558 370 11 62 612 20 547 5.33e-51 185
Msa1004500 MtrunA17_Chr2g0325961 28.447 573 344 17 62 612 20 548 2.35e-50 183
Msa1004500 MtrunA17_Chr3g0112631 34.296 277 172 6 341 613 3 273 2.71e-50 176
Msa1004500 MtrunA17_Chr4g0060071 33.667 300 186 6 316 613 11 299 1.23e-49 175
Msa1004500 MtrunA17_Chr2g0326211 24.783 577 371 13 56 612 14 547 2.31e-49 181
Msa1004500 MtrunA17_Chr6g0451841 25.594 547 363 10 80 614 24 538 7.29e-45 167
Msa1004500 MtrunA17_Chr7g0261721 32.394 213 140 3 413 625 6 214 2.67e-31 122
Msa1004500 MtrunA17_Chr1g0147591 35.000 200 111 5 191 380 5 195 1.13e-29 116
Msa1004500 MtrunA17_Chr3g0112651 32.487 197 125 4 154 350 23 211 1.12e-27 111
Msa1004500 MtrunA17_Chr7g0261831 35.714 154 92 4 295 446 1 149 3.05e-18 84.0
Msa1004500 MtrunA17_Chr4g0060061 32.231 121 82 0 178 298 8 128 1.18e-16 77.0
Msa1004500 MtrunA17_Chr1g0166721 41.667 96 55 1 51 146 16 110 2.74e-16 76.3
Msa1004500 MtrunA17_Chr3g0112661 37.647 85 53 0 62 146 32 116 1.23e-14 71.2
Msa1004500 MtrunA17_Chr7g0261671 38.596 114 67 3 34 146 6 117 1.61e-14 70.5
Msa1004500 MtrunA17_Chr2g0326221 25.688 218 128 5 396 612 39 223 4.11e-14 72.0
Msa1004500 MtrunA17_Chr4g0014851 38.824 85 52 0 62 146 31 115 4.72e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004500 AT5G13400.1 77.977 613 132 2 1 612 1 611 0.0 1007
Msa1004500 AT3G54140.1 40.244 574 321 10 44 612 7 563 1.20e-144 432
Msa1004500 AT3G54140.2 40.244 574 321 10 44 612 7 563 1.20e-144 432
Msa1004500 AT5G01180.2 40.838 573 318 9 44 612 8 563 3.66e-143 428
Msa1004500 AT5G01180.3 40.838 573 318 9 44 612 8 563 3.66e-143 428
Msa1004500 AT5G01180.1 40.838 573 318 9 44 612 8 563 3.66e-143 428
Msa1004500 AT2G02040.1 41.336 554 308 7 63 612 41 581 1.82e-142 427
Msa1004500 AT1G62200.1 40.278 576 319 8 32 602 22 577 7.81e-137 412
Msa1004500 AT1G62200.2 38.512 605 318 9 32 602 22 606 9.06e-131 398
Msa1004500 AT1G62200.3 38.512 605 318 9 32 602 36 620 1.27e-130 398
Msa1004500 AT2G02020.1 38.011 563 296 9 51 611 31 542 3.27e-120 368
Msa1004500 AT2G37900.1 34.729 573 336 11 45 613 29 567 9.33e-113 350
Msa1004500 AT2G26690.1 37.282 574 326 13 60 623 21 570 1.03e-111 347
Msa1004500 AT3G53960.1 35.233 579 333 14 45 613 28 574 2.69e-111 347
Msa1004500 AT5G46040.1 34.848 594 368 11 40 630 6 583 1.18e-110 345
Msa1004500 AT2G40460.1 34.888 579 353 10 38 614 1 557 4.60e-110 343
Msa1004500 AT1G68570.1 36.250 560 341 7 65 618 25 574 1.71e-109 342
Msa1004500 AT3G21670.1 36.234 563 323 6 60 614 26 560 2.19e-109 342
Msa1004500 AT5G46050.1 35.091 550 341 9 40 588 6 540 1.48e-108 339
Msa1004500 AT3G54450.1 33.394 554 338 6 65 612 14 542 1.81e-106 333
Msa1004500 AT1G68570.2 35.818 550 337 7 75 618 5 544 6.60e-106 332
Msa1004500 AT1G12110.1 35.540 574 348 9 60 626 24 582 1.29e-105 332
Msa1004500 AT1G69870.1 34.000 600 371 12 44 635 33 615 6.74e-105 331
Msa1004500 AT2G26690.2 36.315 559 322 12 75 623 3 537 1.43e-104 328
Msa1004500 AT1G32450.1 34.102 607 355 15 41 626 17 599 1.32e-102 325
Msa1004500 AT2G02020.2 35.346 563 290 10 51 611 31 521 1.04e-101 320
Msa1004500 AT2G26690.3 36.496 548 314 13 86 623 2 525 3.58e-101 318
Msa1004500 AT1G59740.1 34.128 545 342 6 62 604 40 569 2.44e-99 315
Msa1004500 AT2G37900.2 35.433 508 299 10 110 613 6 488 3.43e-99 312
Msa1004500 AT1G69850.1 34.790 572 336 9 63 613 25 580 7.50e-99 314
Msa1004500 AT4G21680.1 35.000 560 340 8 62 611 27 572 7.92e-99 314
Msa1004500 AT1G33440.1 34.138 580 355 11 62 634 37 596 9.98e-98 311
Msa1004500 AT5G19640.1 34.532 556 322 12 64 610 60 582 5.86e-96 307
Msa1004500 AT1G27040.2 34.234 555 338 9 63 611 23 556 3.25e-91 293
Msa1004500 AT1G27040.1 34.234 555 338 9 63 611 27 560 3.46e-91 293
Msa1004500 AT1G27080.1 31.570 567 359 9 53 612 4 548 1.03e-90 293
Msa1004500 AT1G52190.1 34.159 565 343 11 59 609 17 566 5.12e-89 289
Msa1004500 AT1G27040.3 34.196 541 329 9 77 611 9 528 9.68e-88 283
Msa1004500 AT1G18880.1 30.645 558 363 7 66 612 22 566 1.72e-87 285
Msa1004500 AT3G47960.1 32.740 562 346 10 66 612 64 608 9.18e-87 284
Msa1004500 AT5G62680.1 31.188 606 389 11 21 612 1 592 1.84e-86 283
Msa1004500 AT3G16180.1 33.276 583 351 12 65 625 25 591 5.91e-86 280
Msa1004500 AT5G62730.1 30.808 594 362 11 33 615 33 588 6.12e-86 280
Msa1004500 AT5G46050.2 34.633 436 275 6 154 588 2 428 5.21e-85 274
Msa1004500 AT5G62730.2 31.485 559 341 10 68 615 2 529 2.02e-84 275
Msa1004500 AT1G72120.1 33.630 562 325 13 62 612 28 552 1.77e-83 273
Msa1004500 AT1G22570.1 31.028 564 344 12 62 612 29 560 5.72e-82 269
Msa1004500 AT1G72140.1 30.265 565 337 11 62 613 33 553 1.55e-80 265
Msa1004500 AT1G22550.1 32.389 565 334 14 62 612 29 559 1.85e-80 265
Msa1004500 AT1G27080.2 31.418 522 329 9 98 612 7 506 2.93e-80 264
Msa1004500 AT1G72125.1 31.495 562 349 11 62 616 28 560 3.43e-80 265
Msa1004500 AT3G25260.1 30.309 551 324 11 63 609 21 515 2.36e-77 256
Msa1004500 AT1G22540.1 31.712 555 338 15 62 609 29 549 5.30e-77 256
Msa1004500 AT1G69860.1 31.185 574 355 10 52 612 3 549 1.70e-76 254
Msa1004500 AT1G22570.2 30.254 552 340 12 74 612 4 523 7.03e-76 252
Msa1004500 AT1G72130.1 29.965 564 334 13 64 617 26 538 6.42e-74 247
Msa1004500 AT5G28470.2 28.905 557 366 12 63 609 17 553 2.45e-71 241
Msa1004500 AT5G28470.1 28.905 557 364 13 63 609 17 551 7.88e-70 237
Msa1004500 AT3G25280.1 28.727 550 340 12 63 609 21 521 2.71e-67 229
Msa1004500 AT3G45710.1 28.571 588 358 17 56 623 14 559 1.59e-65 225
Msa1004500 AT3G45650.1 28.108 555 361 12 63 612 22 543 6.90e-65 223
Msa1004500 AT3G45700.1 28.371 571 360 14 62 622 15 546 7.86e-63 218
Msa1004500 AT3G45680.1 28.970 573 362 15 62 625 19 555 4.55e-62 216
Msa1004500 AT3G45660.1 27.875 574 367 15 63 629 21 554 5.47e-62 216
Msa1004500 AT3G45660.3 27.875 574 367 15 63 629 21 554 5.47e-62 216
Msa1004500 AT3G45660.2 27.875 574 367 15 63 629 42 575 7.33e-62 216
Msa1004500 AT3G45650.2 26.850 581 361 13 63 612 22 569 1.83e-59 209
Msa1004500 AT3G45720.1 28.393 560 353 15 63 612 19 540 1.33e-56 201
Msa1004500 AT1G72130.2 28.894 443 269 10 185 617 14 420 1.66e-56 197
Msa1004500 AT1G72130.3 28.894 443 269 10 185 617 14 420 1.66e-56 197
Msa1004500 AT5G14940.1 24.825 572 343 12 80 615 24 544 1.31e-54 195
Msa1004500 AT3G01350.1 26.003 573 357 11 80 621 24 560 3.08e-54 194
Msa1004500 AT3G45690.1 27.207 555 328 16 62 612 17 499 6.67e-51 184
Msa1004500 AT5G11570.1 25.830 542 311 13 72 609 22 476 1.30e-43 163
Msa1004500 AT2G38100.2 25.849 530 319 17 99 609 10 484 2.67e-29 122
Msa1004500 AT2G38100.1 25.777 547 331 18 82 609 10 500 4.35e-29 122
Msa1004500 AT2G38100.3 25.777 547 331 18 82 609 16 506 6.04e-29 121

Find 116 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCTAAGTGAGTGTTTA+AGG 0.112269 7_1:+2005173 None:intergenic
GAACATTAAACTTGATAATT+TGG 0.135880 7_1:-2004524 Msa1004500:CDS
TGCCAAATTTAAGTGCTTAT+TGG 0.163181 7_1:-2004897 Msa1004500:CDS
GGTCTATGTTCAAATGAAAT+TGG 0.164056 7_1:-2005998 Msa1004500:CDS
ATTGCTGCCTTCTTTATATT+TGG 0.176863 7_1:-2007815 Msa1004500:intron
GCAGAAAGAATGGCTTATTT+TGG 0.182047 7_1:-2007508 Msa1004500:CDS
TTGATTCAATATTGCTTAAT+TGG 0.195137 7_1:-2004871 Msa1004500:CDS
TTGGGTTGGGGTTCTGCTTT+TGG 0.200637 7_1:-2005979 Msa1004500:CDS
AACCAATAAGCACTTAAATT+TGG 0.204333 7_1:+2004895 None:intergenic
TTCTAGCTAGTTTAAATATA+TGG 0.208193 7_1:-2004472 Msa1004500:exon
TTGCTCATACTGATGATTTC+AGG 0.218331 7_1:-2005741 Msa1004500:intron
AATGCAGTCAATAATTTCTT+AGG 0.237323 7_1:-2007421 Msa1004500:CDS
AGACCATGTGTATCTTCTTT+TGG 0.243431 7_1:-2006132 Msa1004500:CDS
TCACAAGCTTCTTCTGTTCT+TGG 0.246695 7_1:-2007394 Msa1004500:CDS
CAAAGAATTGGAATTGGTTT+AGG 0.253602 7_1:-2005018 Msa1004500:CDS
AAATATACCCCTCACTTTAG+AGG 0.270126 7_1:+2004427 None:intergenic
GTCCCTTGTTGAGGAGCTTC+TGG 0.275509 7_1:+2007992 None:intergenic
GCTGCTTTAGCTGGTGGATT+AGG 0.281571 7_1:-2004760 Msa1004500:CDS
AGGTTCCATTGACTTGGATT+AGG 0.295324 7_1:+2005321 None:intergenic
ATGCATACCTTGGACGTTAC+TGG 0.310134 7_1:-2007357 Msa1004500:CDS
ATTGAGGATCTTTCTAAAAC+TGG 0.317548 7_1:-2007845 Msa1004500:CDS
TCTACACCTGTTAATATTCA+TGG 0.321471 7_1:-2007875 Msa1004500:CDS
TGGTAGAAGATCTGCTATAA+AGG 0.325332 7_1:-2005776 Msa1004500:CDS
GAGGATAGAAGGATGGCTTT+AGG 0.330296 7_1:-2007917 Msa1004500:CDS
GACCAATTATCACTTCTATT+AGG 0.331157 7_1:-2006548 Msa1004500:CDS
TTCTATCTTTCTGTGACAAT+TGG 0.332881 7_1:-2006045 Msa1004500:CDS
TTCCTAATAGAAGTGATAAT+TGG 0.337644 7_1:+2006546 None:intergenic
AAAGTGAGGGGTATATTTAA+AGG 0.343643 7_1:-2004422 Msa1004500:three_prime_UTR
GCATCTCAGCTTCAAAGAAT+TGG 0.351587 7_1:-2005030 Msa1004500:CDS
TGAAAAGCGGTACAAAAGTT+TGG 0.355525 7_1:+2005079 None:intergenic
TGTTCAAATGAAATTGGGTT+GGG 0.357013 7_1:-2005992 Msa1004500:CDS
GGTTCCATTGACTTGGATTA+GGG 0.361442 7_1:+2005322 None:intergenic
CAGCTTCAAAGAATTGGAAT+TGG 0.361704 7_1:-2005024 Msa1004500:CDS
CAAGCTTCTTCTGTTCTTGG+TGG 0.377343 7_1:-2007391 Msa1004500:CDS
AAAACCGGCATGCATGTAAC+TGG 0.377966 7_1:+2005141 None:intergenic
AGGATAGAAGGATGGCTTTA+GGG 0.379409 7_1:-2007916 Msa1004500:CDS
CAGATAAAAGACAAGAATCT+TGG 0.379936 7_1:-2004684 Msa1004500:CDS
TCTGCTTATGCTGCTTTAGC+TGG 0.393452 7_1:-2004769 Msa1004500:CDS
GTGTGTTAGAGCTAGTAAAA+TGG 0.396762 7_1:-2008035 Msa1004500:exon
TCATTGAGTCTGAGGATAGA+AGG 0.397462 7_1:-2007928 Msa1004500:CDS
GTTCTATACATAACAGCATT+TGG 0.401544 7_1:-2006479 Msa1004500:CDS
CGAAAGAGAAAAGAATCATT+TGG 0.406039 7_1:-2005832 Msa1004500:CDS
TAAGAAATTATTGACTGCAT+TGG 0.408173 7_1:+2007423 None:intergenic
GAGATCATTAAAATCTTAAT+CGG 0.412263 7_1:+2004364 None:intergenic
ATGATTGTGCAAGCTGGAAT+TGG 0.416463 7_1:+2005249 None:intergenic
GTTGGGTTGTATGAGGTTCC+TGG 0.417358 7_1:-2005796 Msa1004500:CDS
TGTTTAAGGTATATGCTTGT+TGG 0.437145 7_1:+2005187 None:intergenic
TTGATAATTTGGCAAACAAT+GGG 0.441596 7_1:-2004513 Msa1004500:CDS
GACTGAGAGAGTTAGAAATT+CGG 0.450049 7_1:+2005209 None:intergenic
ACTTGAGCGACTCGTGTAAG+AGG 0.451347 7_1:+2005871 None:intergenic
TACACGAGTCGCTCAAGTAT+TGG 0.457764 7_1:-2005866 Msa1004500:CDS
ATCTTTCTAAAACTGGTGGT+TGG 0.458191 7_1:-2007838 Msa1004500:CDS
ATGCATCACATAAAACATAA+AGG 0.459047 7_1:+2007465 None:intergenic
TTTGGTAATAGTGAAGTTGT+TGG 0.461645 7_1:-2005814 Msa1004500:CDS
GTCTATGTTCAAATGAAATT+GGG 0.468317 7_1:-2005997 Msa1004500:CDS
AAATGAAATGGCAGAAAGAA+TGG 0.471770 7_1:-2007518 Msa1004500:CDS
TAAGCACTTAAATTTGGCAT+TGG 0.472247 7_1:+2004901 None:intergenic
CCTGATGCTATGAAAAGTAT+TGG 0.473797 7_1:-2004793 Msa1004500:CDS
CTTGATAATTTGGCAAACAA+TGG 0.474016 7_1:-2004514 Msa1004500:CDS
GGTAGAAGATCTGCTATAAA+GGG 0.480231 7_1:-2005775 Msa1004500:CDS
GTACAAAGGTTCCATTGACT+TGG 0.480579 7_1:+2005315 None:intergenic
GGTTCATTGGCAATAGCAAT+GGG 0.486016 7_1:-2005958 Msa1004500:CDS
TGAAGTTGTTGGGTTGTATG+AGG 0.491613 7_1:-2005803 Msa1004500:CDS
TGGTTCATTGGCAATAGCAA+TGG 0.496742 7_1:-2005959 Msa1004500:CDS
TTGTATAGACATAGGTTGCC+AGG 0.499116 7_1:-2005901 Msa1004500:CDS
GCTTATGCTGCTTTAGCTGG+TGG 0.504449 7_1:-2004766 Msa1004500:CDS
GTACACCTTTGTATAGACAT+AGG 0.505286 7_1:-2005909 Msa1004500:CDS
TTGGTAATAGTGAAGTTGTT+GGG 0.508569 7_1:-2005813 Msa1004500:CDS
AGAAGGATGGCTTTAGGGCG+TGG 0.510086 7_1:-2007911 Msa1004500:CDS
ATGAGGAATACACTTAGGCC+TGG 0.513514 7_1:+2005117 None:intergenic
AGTGTTGTTAAATCAGCCTC+TGG 0.514150 7_1:-2004712 Msa1004500:CDS
TTTCTGCTCATTGAAGTGCA+TGG 0.520712 7_1:+2007968 None:intergenic
TAGAGGTATGTCATTTGCCA+TGG 0.522678 7_1:+2006506 None:intergenic
GCATTGGATGAACTTGCAAA+AGG 0.523734 7_1:+2007439 None:intergenic
GTTCAAATGAAATTGGGTTG+GGG 0.526250 7_1:-2005991 Msa1004500:CDS
TTAAGCATGATTGTGCAAGC+TGG 0.527229 7_1:+2005243 None:intergenic
ATGTTCAAATGAAATTGGGT+TGG 0.527545 7_1:-2005993 Msa1004500:CDS
TTTCTAGCTGATGCATACCT+TGG 0.527808 7_1:-2007367 Msa1004500:CDS
ATAACAGCATTTGGAGCTGC+AGG 0.530231 7_1:-2006470 Msa1004500:intron
ATGGCCCTAATCCAAGTCAA+TGG 0.532912 7_1:-2005326 Msa1004500:CDS
CTACTTGTGTTACTGTACAA+AGG 0.543543 7_1:+2005301 None:intergenic
ATACATACCAAATATAAAGA+AGG 0.545633 7_1:+2007808 None:intergenic
CAGCACATAGATACAAATAC+AGG 0.546985 7_1:-2004570 Msa1004500:CDS
TATACCTTAAACACTCACTT+AGG 0.555464 7_1:-2005177 Msa1004500:CDS
GACACAACATGTTTATGAGA+TGG 0.562119 7_1:-2004548 Msa1004500:CDS
GCTCTACAATTGAAACAAGA+TGG 0.565645 7_1:-2005345 Msa1004500:CDS
CTAATATGAGGAATACACTT+AGG 0.566459 7_1:+2005112 None:intergenic
GGTTACTGCAGGAAATGAAA+TGG 0.566480 7_1:-2007530 Msa1004500:intron
GTATTAGTCCTCTAAAGTGA+GGG 0.567731 7_1:-2004435 Msa1004500:three_prime_UTR
GGTAATAGAGAGCTAATATG+AGG 0.570895 7_1:+2005100 None:intergenic
TCAATGAGCAGAAAGAAACT+TGG 0.574485 7_1:-2007959 Msa1004500:CDS
ACTTCCAGTTACATGCATGC+CGG 0.579964 7_1:-2005145 Msa1004500:CDS
TTTATAGCAGATCTTCTACC+AGG 0.580725 7_1:+2005778 None:intergenic
TTAGGGCGTGGTTATACAAG+AGG 0.582655 7_1:-2007899 Msa1004500:CDS
GTGCATGGTGTCCCTTGTTG+AGG 0.586491 7_1:+2007983 None:intergenic
GAGGATCTTTCTAAAACTGG+TGG 0.590113 7_1:-2007842 Msa1004500:CDS
TATTCATGGAAAATCCATTG+AGG 0.592324 7_1:-2007861 Msa1004500:CDS
CGCATCACTGGTCATCCGCA+TGG 0.596174 7_1:-2005054 Msa1004500:CDS
TGTATTAGTCCTCTAAAGTG+AGG 0.600612 7_1:-2004436 Msa1004500:three_prime_UTR
CCAGTGATGCGTTTGAAAAG+CGG 0.602166 7_1:+2005066 None:intergenic
CTTCACTACAATTTATCTCG+CGG 0.610444 7_1:-2007323 Msa1004500:intron
CGTGTAAGAGGACTTCCACC+TGG 0.612686 7_1:+2005883 None:intergenic
TCACCAGAAGCTCCTCAACA+AGG 0.615556 7_1:-2007995 Msa1004500:CDS
CTATTGTCCAGTAACGTCCA+AGG 0.628088 7_1:+2007350 None:intergenic
TGAGTCTGAGGATAGAAGGA+TGG 0.636242 7_1:-2007924 Msa1004500:CDS
CACCAGAAGCTCCTCAACAA+GGG 0.647560 7_1:-2007994 Msa1004500:CDS
CTCTCATTAGATGCATGAGT+AGG 0.653011 7_1:-2008122 Msa1004500:five_prime_UTR
ACTGTGAGCCTGCAAAACCA+TGG 0.656363 7_1:-2006523 Msa1004500:CDS
TTGTCTCAAAACATCAACAC+TGG 0.656717 7_1:-2004661 Msa1004500:CDS
AATTGTAGCATTCACAGCAG+TGG 0.669454 7_1:-2006019 Msa1004500:CDS
TATTAGTCCTCTAAAGTGAG+GGG 0.677539 7_1:-2004434 Msa1004500:three_prime_UTR
GGCAACCTATGTCTATACAA+AGG 0.679165 7_1:+2005904 None:intergenic
TTATGTATAGAACAGTGTAG+AGG 0.694790 7_1:+2006489 None:intergenic
TATAGACATAGGTTGCCAGG+TGG 0.698387 7_1:-2005898 Msa1004500:CDS
GCTCCAAAAGAAGATACACA+TGG 0.731891 7_1:+2006129 None:intergenic
TGAAGCTGAGATGCACCATG+CGG 0.749014 7_1:+2005039 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGATGAAAAAAAAAAA+AGG + chr7_1:2007108-2007127 None:intergenic 10.0%
!!! TTTTAATTCTATATATGTTT+AGG - chr7_1:2007123-2007142 Msa1004500:intron 10.0%
!!! AAACTCAATTTTACATATAA+GGG + chr7_1:2004430-2004449 None:intergenic 15.0%
!!! AAAACTCAATTTTACATATA+AGG + chr7_1:2004431-2004450 None:intergenic 15.0%
!! AGAATGCATTAAAATATATT+AGG - chr7_1:2004854-2004873 Msa1004500:CDS 15.0%
!! ACTTATTATGATTATGAAAA+TGG - chr7_1:2004906-2004925 Msa1004500:CDS 15.0%
!!! CAATTTATTTTAATCTTTGT+TGG - chr7_1:2006324-2006343 Msa1004500:intron 15.0%
!! ATACATACCAAATATAAAGA+AGG + chr7_1:2004701-2004720 None:intergenic 20.0%
!! TTAAGAGTGAATAAATAGAT+TGG - chr7_1:2005267-2005286 Msa1004500:CDS 20.0%
!!! AATGGTATTTTACAATTTTG+TGG + chr7_1:2005352-2005371 None:intergenic 20.0%
!! TATAACTAGAAATGTTACAT+TGG - chr7_1:2005413-2005432 Msa1004500:intron 20.0%
!!! CTAATTTTCCTATGAAATTT+AGG + chr7_1:2005571-2005590 None:intergenic 20.0%
!!! TTTCATAGGAAAATTAGTTT+AGG - chr7_1:2005574-2005593 Msa1004500:intron 20.0%
!! CAAAGTTATTATGATATATC+TGG + chr7_1:2005846-2005865 None:intergenic 20.0%
!!! TTATTTTCTTAAGTTGCTAA+TGG - chr7_1:2006197-2006216 Msa1004500:intron 20.0%
!! GTGTAAATAAATCATGTTTA+TGG + chr7_1:2007038-2007057 None:intergenic 20.0%
!! AAGAATAATATCTCTTACAA+TGG + chr7_1:2007080-2007099 None:intergenic 20.0%
!!! GAATTGGAATTAGTTTTATA+AGG + chr7_1:2007244-2007263 None:intergenic 20.0%
!! TTGATTCAATATTGCTTAAT+TGG - chr7_1:2007635-2007654 Msa1004500:intron 20.0%
!!! GAACATTAAACTTGATAATT+TGG - chr7_1:2007982-2008001 Msa1004500:CDS 20.0%
!!! TTCTAGCTAGTTTAAATATA+TGG - chr7_1:2008034-2008053 Msa1004500:exon 20.0%
!! GATTTTCCATGAATATTAAC+AGG + chr7_1:2004640-2004659 None:intergenic 25.0%
!!! TAGTATATGTCATGTTTTTG+AGG - chr7_1:2004777-2004796 Msa1004500:CDS 25.0%
!!! ATGTTTTTGAGGTAAAAGAT+AGG - chr7_1:2004788-2004807 Msa1004500:CDS 25.0%
!!! GATTTTTTTTGTTGCTTCTA+TGG - chr7_1:2004952-2004971 Msa1004500:CDS 25.0%
! ATGCATCACATAAAACATAA+AGG + chr7_1:2005044-2005063 None:intergenic 25.0%
!! TAAGAAATTATTGACTGCAT+TGG + chr7_1:2005086-2005105 None:intergenic 25.0%
! AATGCAGTCAATAATTTCTT+AGG - chr7_1:2005085-2005104 Msa1004500:CDS 25.0%
! TTGCTAATTCACAAAAATGA+GGG + chr7_1:2005323-2005342 None:intergenic 25.0%
! TTTGCTAATTCACAAAAATG+AGG + chr7_1:2005324-2005343 None:intergenic 25.0%
!! ATTCCAAACTTTTATGAACA+GGG - chr7_1:2005874-2005893 Msa1004500:CDS 25.0%
! TTCCTAATAGAAGTGATAAT+TGG + chr7_1:2005963-2005982 None:intergenic 25.0%
! ATTCTATCATATTTCTCAAC+AGG - chr7_1:2006347-2006366 Msa1004500:intron 25.0%
! GTCTATGTTCAAATGAAATT+GGG - chr7_1:2006509-2006528 Msa1004500:CDS 25.0%
!! TCTAACATGCTTTTCTTTAT+TGG - chr7_1:2006575-2006594 Msa1004500:CDS 25.0%
!!! ATAGAAAGCATCAAAACTTT+TGG + chr7_1:2006823-2006842 None:intergenic 25.0%
!! TTTAGGAGTTTCGATTTTAT+CGG - chr7_1:2007505-2007524 Msa1004500:CDS 25.0%
! AACCAATAAGCACTTAAATT+TGG + chr7_1:2007614-2007633 None:intergenic 25.0%
!!! CAAGTTTGATTACTTTTACT+GGG - chr7_1:2007868-2007887 Msa1004500:CDS 25.0%
!! TTGATAATTTGGCAAACAAT+GGG - chr7_1:2007993-2008012 Msa1004500:CDS 25.0%
TCTACACCTGTTAATATTCA+TGG - chr7_1:2004631-2004650 Msa1004500:CDS 30.0%
TATTCATGGAAAATCCATTG+AGG - chr7_1:2004645-2004664 Msa1004500:CDS 30.0%
!!! AGTTTTAGAAAGATCCTCAA+TGG + chr7_1:2004662-2004681 None:intergenic 30.0%
!! ATTGAGGATCTTTCTAAAAC+TGG - chr7_1:2004661-2004680 Msa1004500:CDS 30.0%
ATTGCTGCCTTCTTTATATT+TGG - chr7_1:2004691-2004710 Msa1004500:CDS 30.0%
ATCTTACGATATGTGTATGT+TGG - chr7_1:2004732-2004751 Msa1004500:CDS 30.0%
TAGGATAAGATCTGAATTCT+TGG - chr7_1:2004807-2004826 Msa1004500:CDS 30.0%
!!! TTTTTTTGTTGCTTCTATGG+TGG - chr7_1:2004955-2004974 Msa1004500:CDS 30.0%
AAATGAAATGGCAGAAAGAA+TGG - chr7_1:2004988-2005007 Msa1004500:CDS 30.0%
! TTTTGGACTTTCTGTTAACA+TGG - chr7_1:2005015-2005034 Msa1004500:CDS 30.0%
TGCTAATTCACAAAAATGAG+GGG + chr7_1:2005322-2005341 None:intergenic 30.0%
AACATATCAACAACTTCGAA+TGG + chr7_1:2005370-2005389 None:intergenic 30.0%
TTCATAGACAAATTAGTCCT+TGG + chr7_1:2005467-2005486 None:intergenic 30.0%
ATGAGTGACCTAAATTTCAT+AGG - chr7_1:2005560-2005579 Msa1004500:intron 30.0%
!!! TTGATAGAGACTATTTTGAC+CGG - chr7_1:2005685-2005704 Msa1004500:intron 30.0%
! AGTATGTAGTTTTTGCGAAT+TGG + chr7_1:2005738-2005757 None:intergenic 30.0%
TTTGTTTCGACTTAGTGAAT+AGG + chr7_1:2005798-2005817 None:intergenic 30.0%
! CATTCCAAACTTTTATGAAC+AGG - chr7_1:2005873-2005892 Msa1004500:CDS 30.0%
! ATAATTGGTCACAGTTTTCT+TGG + chr7_1:2005948-2005967 None:intergenic 30.0%
GACCAATTATCACTTCTATT+AGG - chr7_1:2005958-2005977 Msa1004500:CDS 30.0%
TTATGTATAGAACAGTGTAG+AGG + chr7_1:2006020-2006039 None:intergenic 30.0%
GTTCTATACATAACAGCATT+TGG - chr7_1:2006027-2006046 Msa1004500:CDS 30.0%
CAAACTATGAAGAATTGACA+CGG + chr7_1:2006258-2006277 None:intergenic 30.0%
TTCTATCTTTCTGTGACAAT+TGG - chr7_1:2006461-2006480 Msa1004500:intron 30.0%
GGTCTATGTTCAAATGAAAT+TGG - chr7_1:2006508-2006527 Msa1004500:CDS 30.0%
ATGTTCAAATGAAATTGGGT+TGG - chr7_1:2006513-2006532 Msa1004500:CDS 30.0%
TGTTCAAATGAAATTGGGTT+GGG - chr7_1:2006514-2006533 Msa1004500:CDS 30.0%
! TTCTTTTCTCTTTCGATAAG+CGG + chr7_1:2006669-2006688 None:intergenic 30.0%
CGAAAGAGAAAAGAATCATT+TGG - chr7_1:2006674-2006693 Msa1004500:intron 30.0%
! TTTGGTAATAGTGAAGTTGT+TGG - chr7_1:2006692-2006711 Msa1004500:intron 30.0%
! TTGGTAATAGTGAAGTTGTT+GGG - chr7_1:2006693-2006712 Msa1004500:intron 30.0%
! TGTTTAAGGTATATGCTTGT+TGG + chr7_1:2007322-2007341 None:intergenic 30.0%
TATACCTTAAACACTCACTT+AGG - chr7_1:2007329-2007348 Msa1004500:CDS 30.0%
TTTACCTAAGTGAGTGTTTA+AGG + chr7_1:2007336-2007355 None:intergenic 30.0%
CTAATATGAGGAATACACTT+AGG + chr7_1:2007397-2007416 None:intergenic 30.0%
! CAAAGAATTGGAATTGGTTT+AGG - chr7_1:2007488-2007507 Msa1004500:CDS 30.0%
TAAGCACTTAAATTTGGCAT+TGG + chr7_1:2007608-2007627 None:intergenic 30.0%
TGCCAAATTTAAGTGCTTAT+TGG - chr7_1:2007609-2007628 Msa1004500:intron 30.0%
!!! ATTTTGCATTGTTGGTTTGT+TGG - chr7_1:2007670-2007689 Msa1004500:intron 30.0%
! TCTTTTATCTGAATTTCCAG+AGG + chr7_1:2007813-2007832 None:intergenic 30.0%
CAGATAAAAGACAAGAATCT+TGG - chr7_1:2007822-2007841 Msa1004500:CDS 30.0%
!! GCAAGTTTGATTACTTTTAC+TGG - chr7_1:2007867-2007886 Msa1004500:CDS 30.0%
! CTTGATAATTTGGCAAACAA+TGG - chr7_1:2007992-2008011 Msa1004500:CDS 30.0%
! AAAGTGAGGGGTATATTTAA+AGG - chr7_1:2008084-2008103 Msa1004500:five_prime_UTR 30.0%
GTGTGTTAGAGCTAGTAAAA+TGG - chr7_1:2004471-2004490 Msa1004500:exon 35.0%
TCAATGAGCAGAAAGAAACT+TGG - chr7_1:2004547-2004566 Msa1004500:CDS 35.0%
! CATTTTCTTCATTGAGTCTG+AGG - chr7_1:2004570-2004589 Msa1004500:CDS 35.0%
!! ATCTTTCTAAAACTGGTGGT+TGG - chr7_1:2004668-2004687 Msa1004500:CDS 35.0%
! GCAGAAAGAATGGCTTATTT+TGG - chr7_1:2004998-2005017 Msa1004500:CDS 35.0%
CTTCACTACAATTTATCTCG+CGG - chr7_1:2005183-2005202 Msa1004500:CDS 35.0%
TTGGAGAGTTAACATTGATG+TGG + chr7_1:2005448-2005467 None:intergenic 35.0%
ACATCAATGTTAACTCTCCA+AGG - chr7_1:2005447-2005466 Msa1004500:intron 35.0%
TGTCACATCATAGTCTCTAA+AGG - chr7_1:2005656-2005675 Msa1004500:intron 35.0%
!! TCTCTGAAACTGTAAAGTAC+CGG + chr7_1:2005707-2005726 None:intergenic 35.0%
TGAATAGGCAAATTGGTTGT+AGG + chr7_1:2005783-2005802 None:intergenic 35.0%
GACTTAGTGAATAGGCAAAT+TGG + chr7_1:2005790-2005809 None:intergenic 35.0%
AAGCCCTGTTCATAAAAGTT+TGG + chr7_1:2005880-2005899 None:intergenic 35.0%
! TTTTATGAACAGGGCTTAAC+TGG - chr7_1:2005883-2005902 Msa1004500:CDS 35.0%
! CAGGTATTGTTAGATATAGC+TGG - chr7_1:2006055-2006074 Msa1004500:CDS 35.0%
TGTTAGATATAGCTGGTGAT+TGG - chr7_1:2006062-2006081 Msa1004500:CDS 35.0%
! TGAAGTGTTATGACATGTGT+CGG + chr7_1:2006171-2006190 None:intergenic 35.0%
! AGACCATGTGTATCTTCTTT+TGG - chr7_1:2006374-2006393 Msa1004500:intron 35.0%
! TTTTGCTTCTTTCGTCGAAT+TGG + chr7_1:2006406-2006425 None:intergenic 35.0%
! GTTCAAATGAAATTGGGTTG+GGG - chr7_1:2006515-2006534 Msa1004500:CDS 35.0%
GTACACCTTTGTATAGACAT+AGG - chr7_1:2006597-2006616 Msa1004500:CDS 35.0%
TTTATAGCAGATCTTCTACC+AGG + chr7_1:2006731-2006750 None:intergenic 35.0%
TGGTAGAAGATCTGCTATAA+AGG - chr7_1:2006730-2006749 Msa1004500:intron 35.0%
GGTAGAAGATCTGCTATAAA+GGG - chr7_1:2006731-2006750 Msa1004500:intron 35.0%
TTGCTCATACTGATGATTTC+AGG - chr7_1:2006765-2006784 Msa1004500:intron 35.0%
GCTCTACAATTGAAACAAGA+TGG - chr7_1:2007161-2007180 Msa1004500:intron 35.0%
! CTACTTGTGTTACTGTACAA+AGG + chr7_1:2007208-2007227 None:intergenic 35.0%
GACTGAGAGAGTTAGAAATT+CGG + chr7_1:2007300-2007319 None:intergenic 35.0%
GGTAATAGAGAGCTAATATG+AGG + chr7_1:2007409-2007428 None:intergenic 35.0%
TGAAAAGCGGTACAAAAGTT+TGG + chr7_1:2007430-2007449 None:intergenic 35.0%
CAGCTTCAAAGAATTGGAAT+TGG - chr7_1:2007482-2007501 Msa1004500:CDS 35.0%
!! TTTCGATTTTATCGGTTGCT+TGG - chr7_1:2007513-2007532 Msa1004500:CDS 35.0%
!! TTCGATTTTATCGGTTGCTT+GGG - chr7_1:2007514-2007533 Msa1004500:CDS 35.0%
!! GCTGAAGTATTTTGCATTGT+TGG - chr7_1:2007662-2007681 Msa1004500:intron 35.0%
! CCAATACTTTTCATAGCATC+AGG + chr7_1:2007716-2007735 None:intergenic 35.0%
! CCTGATGCTATGAAAAGTAT+TGG - chr7_1:2007713-2007732 Msa1004500:intron 35.0%
TTGTCTCAAAACATCAACAC+TGG - chr7_1:2007845-2007864 Msa1004500:CDS 35.0%
CAGCACATAGATACAAATAC+AGG - chr7_1:2007936-2007955 Msa1004500:CDS 35.0%
GACACAACATGTTTATGAGA+TGG - chr7_1:2007958-2007977 Msa1004500:CDS 35.0%
!! TGTATTAGTCCTCTAAAGTG+AGG - chr7_1:2008070-2008089 Msa1004500:five_prime_UTR 35.0%
!! GTATTAGTCCTCTAAAGTGA+GGG - chr7_1:2008071-2008090 Msa1004500:five_prime_UTR 35.0%
!! TATTAGTCCTCTAAAGTGAG+GGG - chr7_1:2008072-2008091 Msa1004500:five_prime_UTR 35.0%
AAATATACCCCTCACTTTAG+AGG + chr7_1:2008082-2008101 None:intergenic 35.0%
CTCTCATTAGATGCATGAGT+AGG - chr7_1:2004384-2004403 Msa1004500:three_prime_UTR 40.0%
TTTCTGCTCATTGAAGTGCA+TGG + chr7_1:2004541-2004560 None:intergenic 40.0%
TCATTGAGTCTGAGGATAGA+AGG - chr7_1:2004578-2004597 Msa1004500:CDS 40.0%
! AGGATAGAAGGATGGCTTTA+GGG - chr7_1:2004590-2004609 Msa1004500:CDS 40.0%
!! GAGGATCTTTCTAAAACTGG+TGG - chr7_1:2004664-2004683 Msa1004500:CDS 40.0%
CCAAACTCAGCAAACAAACA+TGG + chr7_1:2004880-2004899 None:intergenic 40.0%
! CCATGTTTGTTTGCTGAGTT+TGG - chr7_1:2004877-2004896 Msa1004500:CDS 40.0%
GGTTACTGCAGGAAATGAAA+TGG - chr7_1:2004976-2004995 Msa1004500:CDS 40.0%
GCATTGGATGAACTTGCAAA+AGG + chr7_1:2005070-2005089 None:intergenic 40.0%
TCACAAGCTTCTTCTGTTCT+TGG - chr7_1:2005112-2005131 Msa1004500:CDS 40.0%
!! TTTCTAGCTGATGCATACCT+TGG - chr7_1:2005139-2005158 Msa1004500:CDS 40.0%
CTACAATTTATCTCGCGGTA+TGG - chr7_1:2005188-2005207 Msa1004500:CDS 40.0%
ATCTGACAGCTCAAATCGAA+AGG + chr7_1:2005221-2005240 None:intergenic 40.0%
ACATTGATGCTAGATCAACG+TGG - chr7_1:2005604-2005623 Msa1004500:intron 40.0%
! TGGTCACAGTTTTCTTGGTT+TGG + chr7_1:2005943-2005962 None:intergenic 40.0%
! TAGAGGTATGTCATTTGCCA+TGG + chr7_1:2006003-2006022 None:intergenic 40.0%
GACATCGGACACAATACTAA+CGG + chr7_1:2006236-2006255 None:intergenic 40.0%
TGAAGAATTGACACGGACAT+CGG + chr7_1:2006251-2006270 None:intergenic 40.0%
GCTCCAAAAGAAGATACACA+TGG + chr7_1:2006380-2006399 None:intergenic 40.0%
AATTGTAGCATTCACAGCAG+TGG - chr7_1:2006487-2006506 Msa1004500:CDS 40.0%
TGGTTCATTGGCAATAGCAA+TGG - chr7_1:2006547-2006566 Msa1004500:CDS 40.0%
GGTTCATTGGCAATAGCAAT+GGG - chr7_1:2006548-2006567 Msa1004500:CDS 40.0%
GGCAACCTATGTCTATACAA+AGG + chr7_1:2006605-2006624 None:intergenic 40.0%
TTGTATAGACATAGGTTGCC+AGG - chr7_1:2006605-2006624 Msa1004500:CDS 40.0%
! TGAAGTTGTTGGGTTGTATG+AGG - chr7_1:2006703-2006722 Msa1004500:intron 40.0%
!! TTTCTGACACGTGTCACTTT+CGG + chr7_1:2007015-2007034 None:intergenic 40.0%
!! GGTTCCATTGACTTGGATTA+GGG + chr7_1:2007187-2007206 None:intergenic 40.0%
!! AGGTTCCATTGACTTGGATT+AGG + chr7_1:2007188-2007207 None:intergenic 40.0%
! GTACAAAGGTTCCATTGACT+TGG + chr7_1:2007194-2007213 None:intergenic 40.0%
ATGATTGTGCAAGCTGGAAT+TGG + chr7_1:2007260-2007279 None:intergenic 40.0%
TTAAGCATGATTGTGCAAGC+TGG + chr7_1:2007266-2007285 None:intergenic 40.0%
GCATCTCAGCTTCAAAGAAT+TGG - chr7_1:2007476-2007495 Msa1004500:CDS 40.0%
! AGTGTTGTTAAATCAGCCTC+TGG - chr7_1:2007794-2007813 Msa1004500:intron 40.0%
TGAGTCTGAGGATAGAAGGA+TGG - chr7_1:2004582-2004601 Msa1004500:CDS 45.0%
GAGGATAGAAGGATGGCTTT+AGG - chr7_1:2004589-2004608 Msa1004500:CDS 45.0%
TTAGGGCGTGGTTATACAAG+AGG - chr7_1:2004607-2004626 Msa1004500:CDS 45.0%
CAAGCTTCTTCTGTTCTTGG+TGG - chr7_1:2005115-2005134 Msa1004500:CDS 45.0%
ATGCATACCTTGGACGTTAC+TGG - chr7_1:2005149-2005168 Msa1004500:CDS 45.0%
CTATTGTCCAGTAACGTCCA+AGG + chr7_1:2005159-2005178 None:intergenic 45.0%
ATGCTAGATCAACGTGGTTG+AGG - chr7_1:2005610-2005629 Msa1004500:intron 45.0%
!! GTCATTTGCCATGGTTTTGC+AGG + chr7_1:2005994-2006013 None:intergenic 45.0%
! ATAACAGCATTTGGAGCTGC+AGG - chr7_1:2006036-2006055 Msa1004500:CDS 45.0%
CTGACATTTCTTTCCCGTGT+TGG - chr7_1:2006125-2006144 Msa1004500:CDS 45.0%
!!! GGGTTCTGCTTTTGGTTCAT+TGG - chr7_1:2006535-2006554 Msa1004500:CDS 45.0%
TATAGACATAGGTTGCCAGG+TGG - chr7_1:2006608-2006627 Msa1004500:CDS 45.0%
TACACGAGTCGCTCAAGTAT+TGG - chr7_1:2006640-2006659 Msa1004500:intron 45.0%
TTGGAGCTGAGTAGTTAGCA+AGG + chr7_1:2006804-2006823 None:intergenic 45.0%
ATGGCCCTAATCCAAGTCAA+TGG - chr7_1:2007180-2007199 Msa1004500:intron 45.0%
ACTTCCAGTTACATGCATGC+CGG - chr7_1:2007361-2007380 Msa1004500:CDS 45.0%
AAAACCGGCATGCATGTAAC+TGG + chr7_1:2007368-2007387 None:intergenic 45.0%
ACACTTAGGCCTGGAAAAAC+CGG + chr7_1:2007383-2007402 None:intergenic 45.0%
ATGAGGAATACACTTAGGCC+TGG + chr7_1:2007392-2007411 None:intergenic 45.0%
CCAGTGATGCGTTTGAAAAG+CGG + chr7_1:2007443-2007462 None:intergenic 45.0%
!! TCTGCTTATGCTGCTTTAGC+TGG - chr7_1:2007737-2007756 Msa1004500:intron 45.0%
TCACCAGAAGCTCCTCAACA+AGG - chr7_1:2004511-2004530 Msa1004500:CDS 50.0%
CACCAGAAGCTCCTCAACAA+GGG - chr7_1:2004512-2004531 Msa1004500:CDS 50.0%
GCTTCTATGGTGGTTACTGC+AGG - chr7_1:2004965-2004984 Msa1004500:CDS 50.0%
ACTGTGAGCCTGCAAAACCA+TGG - chr7_1:2005983-2006002 Msa1004500:CDS 50.0%
TGTCGGCATCATGTCGATGT+CGG + chr7_1:2006154-2006173 None:intergenic 50.0%
!!! TTGGGTTGGGGTTCTGCTTT+TGG - chr7_1:2006527-2006546 Msa1004500:CDS 50.0%
ACTTGAGCGACTCGTGTAAG+AGG + chr7_1:2006638-2006657 None:intergenic 50.0%
! GTTGGGTTGTATGAGGTTCC+TGG - chr7_1:2006710-2006729 Msa1004500:intron 50.0%
!!! ACATGCATGCCGGTTTTTCC+AGG - chr7_1:2007371-2007390 Msa1004500:CDS 50.0%
!! CCGCTTTTCAAACGCATCAC+TGG - chr7_1:2007440-2007459 Msa1004500:CDS 50.0%
TGAAGCTGAGATGCACCATG+CGG + chr7_1:2007470-2007489 None:intergenic 50.0%
!! GCTTATGCTGCTTTAGCTGG+TGG - chr7_1:2007740-2007759 Msa1004500:intron 50.0%
!! GCTGCTTTAGCTGGTGGATT+AGG - chr7_1:2007746-2007765 Msa1004500:intron 50.0%
GTCCCTTGTTGAGGAGCTTC+TGG + chr7_1:2004517-2004536 None:intergenic 55.0%
GTGCATGGTGTCCCTTGTTG+AGG + chr7_1:2004526-2004545 None:intergenic 55.0%
!! AGAAGGATGGCTTTAGGGCG+TGG - chr7_1:2004595-2004614 Msa1004500:CDS 55.0%
TCGATGTCGGACACCAACAC+GGG + chr7_1:2006141-2006160 None:intergenic 55.0%
GTCGATGTCGGACACCAACA+CGG + chr7_1:2006142-2006161 None:intergenic 55.0%
CGTGTAAGAGGACTTCCACC+TGG + chr7_1:2006626-2006645 None:intergenic 55.0%
CGCATCACTGGTCATCCGCA+TGG - chr7_1:2007452-2007471 Msa1004500:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 2004368 2008160 2004368 ID=Msa1004500;Name=Msa1004500
chr7_1 mRNA 2004368 2008160 2004368 ID=Msa1004500-mRNA-1;Parent=Msa1004500;Name=Msa1004500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=122|1|1|1|1|1|5|121|638
chr7_1 exon 2004368 2005383 2004368 ID=Msa1004500-mRNA-1:exon:814;Parent=Msa1004500-mRNA-1
chr7_1 exon 2005742 2006159 2005742 ID=Msa1004500-mRNA-1:exon:813;Parent=Msa1004500-mRNA-1
chr7_1 exon 2006471 2006633 2006471 ID=Msa1004500-mRNA-1:exon:812;Parent=Msa1004500-mRNA-1
chr7_1 exon 2007324 2007541 2007324 ID=Msa1004500-mRNA-1:exon:811;Parent=Msa1004500-mRNA-1
chr7_1 exon 2007816 2008160 2007816 ID=Msa1004500-mRNA-1:exon:810;Parent=Msa1004500-mRNA-1
chr7_1 five_prime_UTR 2008039 2008160 2008039 ID=Msa1004500-mRNA-1:five_prime_utr;Parent=Msa1004500-mRNA-1
chr7_1 CDS 2007816 2008038 2007816 ID=Msa1004500-mRNA-1:cds;Parent=Msa1004500-mRNA-1
chr7_1 CDS 2007324 2007541 2007324 ID=Msa1004500-mRNA-1:cds;Parent=Msa1004500-mRNA-1
chr7_1 CDS 2006471 2006633 2006471 ID=Msa1004500-mRNA-1:cds;Parent=Msa1004500-mRNA-1
chr7_1 CDS 2005742 2006159 2005742 ID=Msa1004500-mRNA-1:cds;Parent=Msa1004500-mRNA-1
chr7_1 CDS 2004489 2005383 2004489 ID=Msa1004500-mRNA-1:cds;Parent=Msa1004500-mRNA-1
chr7_1 three_prime_UTR 2004368 2004488 2004368 ID=Msa1004500-mRNA-1:three_prime_utr;Parent=Msa1004500-mRNA-1
Gene Sequence

>Msa1004500

ATGGATACTTGTGAGATCAAGTCACCAGAAGCTCCTCAACAAGGGACACCATGCACTTCAATGAGCAGAAAGAAACTTGGCATTTTCTTCATTGAGTCTGAGGATAGAAGGATGGCTTTAGGGCGTGGTTATACAAGAGGTTCTACACCTGTTAATATTCATGGAAAATCCATTGAGGATCTTTCTAAAACTGGTGGTTGGATTGCTGCCTTCTTTATATTTGGAAATGAAATGGCAGAAAGAATGGCTTATTTTGGACTTTCTGTTAACATGGTAGCCTTTATGTTTTATGTGATGCATAGACCTTTTGCAAGTTCATCCAATGCAGTCAATAATTTCTTAGGAATATCACAAGCTTCTTCTGTTCTTGGTGGATTTCTAGCTGATGCATACCTTGGACGTTACTGGACAATAGCTATCTTCACTACAATTTATCTCGCGGGCTTAACTGGAATAACAATATGTGCAACAATGAGCATTTTTGTGCCAAACCAAGAAAACTGTGACCAATTATCACTTCTATTAGGAAACTGTGAGCCTGCAAAACCATGGCAAATGACATACCTCTACACTGTTCTATACATAACAGCATTTGGAGCTGCAGGTATAAGACCATGTGTATCTTCTTTTGGAGCAGACCAATTCGACGAAAGAAGCAAAAACTACAAATCACATCTTGACAGATTTTTCAACTTGTTCTATCTTTCTGTGACAATTGGTGCAATTGTAGCATTCACAGCAGTGGTCTATGTTCAAATGAAATTGGGTTGGGGTTCTGCTTTTGGTTCATTGGCAATAGCAATGGGAGTATCTAACATGCTTTTCTTTATTGGTACACCTTTGTATAGACATAGGTTGCCAGGTGGAAGTCCTCTTACACGAGTCGCTCAAGTATTGGTTGCCGCTTATCGAAAGAGAAAAGAATCATTTGGTAATAGTGAAGTTGTTGGGTTGTATGAGGTTCCTGGTAGAAGATCTGCTATAAAGGGTAGTCAGAAAATTGCTCATACTGATGATTTCAGGTTTCTTGACAAAGCAGCTCTACAATTGAAACAAGATGGCCCTAATCCAAGTCAATGGAACCTTTGTACAGTAACACAAGTAGAAGAAGTGAAGATCCTTATAAAACTAATTCCAATTCCAGCTTGCACAATCATGCTTAATGTAATCTTAACCGAATTTCTAACTCTCTCAGTCCAACAAGCATATACCTTAAACACTCACTTAGGTAAATTAAAACTTCCAGTTACATGCATGCCGGTTTTTCCAGGCCTAAGTGTATTCCTCATATTAGCTCTCTATTACCAAACTTTTGTACCGCTTTTCAAACGCATCACTGGTCATCCGCATGGTGCATCTCAGCTTCAAAGAATTGGAATTGGTTTAGGAGTTTCGATTTTATCGGTTGCTTGGGCTGCTATCTTCGAAAAGTATAGAAGAAACTATGCTATCAAAAATGAATATGAAGCTAGTTTCTTAACACCAATGCCAAATTTAAGTGCTTATTGGTTATTGATTCAATATTGCTTAATTGGTGTAGCTGAAGTATTTTGCATTGTTGGTTTGTTGGAGTTTTTATATGAAGAAGCACCTGATGCTATGAAAAGTATTGGTTCTGCTTATGCTGCTTTAGCTGGTGGATTAGGTTGTTTTTTTGCAACATTTATAAATAGTGTTGTTAAATCAGCCTCTGGAAATTCAGATAAAAGACAAGAATCTTGGTTGTCTCAAAACATCAACACTGGCAAGTTTGATTACTTTTACTGGGTTCTTACAGCTTTAAGCTTAGTCAACTTCTGTGTCTTCTTATATTCAGCACATAGATACAAATACAGGACACAACATGTTTATGAGATGGAGAACATTAAACTTGATAATTTGGCAAACAATGGGAGCTCTACAACAGTTTCTTTCTAG
Protein sequence

>Msa1004500

MDTCEIKSPEAPQQGTPCTSMSRKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSIEDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIVAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKYRRNYAIKNEYEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFFATFINSVVKSASGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVNFCVFLYSAHRYKYRTQHVYEMENIKLDNLANNGSSTTVSF*