AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667220 MtrunA17_Chr4g0005721 98.253 229 4 0 1 229 1 229 8.68e-169 464
Msa0667220 MtrunA17_Chr1g0174241 35.294 153 81 5 77 228 190 325 2.97e-18 82.0
Msa0667220 MtrunA17_Chr1g0198131 35.948 153 82 5 77 228 165 302 1.51e-17 79.7
Msa0667220 MtrunA17_Chr1g0174221 30.065 153 90 5 77 228 97 233 1.67e-14 70.9
Msa0667220 MtrunA17_Chr3g0122741 29.412 153 90 4 77 228 12 147 2.18e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667220 AT2G38025.1 60.000 230 81 5 9 228 5 233 2.15e-86 256
Msa0667220 AT2G38025.2 67.262 168 49 2 67 228 43 210 4.52e-74 224
Msa0667220 AT3G57810.2 35.065 154 82 5 77 229 168 304 8.72e-21 89.0
Msa0667220 AT3G57810.4 35.065 154 82 5 77 229 168 304 8.72e-21 89.0
Msa0667220 AT3G57810.3 35.065 154 82 5 77 229 168 304 8.72e-21 89.0

Find 76 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTAACTTATAATAATT+TGG 0.041709 4_4:+7434323 None:intergenic
GGATTGGGCAACCTGATTTC+TGG 0.156112 4_4:-7435189 Msa0667220:CDS
AATTGGGGTAATAGTCATTT+TGG 0.177304 4_4:-7434291 Msa0667220:three_prime_UTR
AATCGGAATTCAAGCTTATT+TGG 0.181024 4_4:-7437549 Msa0667220:CDS
CGCCATGGAGTTTGAGGAAT+TGG 0.217801 4_4:+7437775 None:intergenic
TTAGTTTGATAATTTATAAT+TGG 0.225266 4_4:-7434308 Msa0667220:three_prime_UTR
GTATGGAAGTGAATTTAAAA+AGG 0.264562 4_4:-7434601 Msa0667220:CDS
TCAAATGATAATTAGCCTAA+TGG 0.297630 4_4:+7434370 None:intergenic
TTCATTCCGATTGCCGAGTA+TGG 0.300593 4_4:-7434618 Msa0667220:CDS
TAGTTTGATAATTTATAATT+GGG 0.301501 4_4:-7434307 Msa0667220:three_prime_UTR
TCTGGTATGTACACAATAAT+TGG 0.313597 4_4:+7434795 None:intergenic
CGGTTGCTTCAGTTGTTTCT+CGG 0.328646 4_4:-7437575 Msa0667220:CDS
AAACTAACTTATAATAATTT+GGG 0.337402 4_4:+7434324 None:intergenic
GATTCTCCTCCCCAGAAATC+AGG 0.356950 4_4:+7435178 None:intergenic
GCAGTTACTGCAGGCGGATT+GGG 0.359521 4_4:-7435204 Msa0667220:intron
TGCAGTTACTGCAGGCGGAT+TGG 0.360734 4_4:-7435205 Msa0667220:intron
GATTGGGCAACCTGATTTCT+GGG 0.372109 4_4:-7435188 Msa0667220:CDS
ATAAGTACTTATTGTCATAT+TGG 0.373159 4_4:+7434121 None:intergenic
CAGTTGTTTCTCGGTTTAAT+CGG 0.374617 4_4:-7437566 Msa0667220:CDS
ACATTAATTACCTTCCCATT+AGG 0.378095 4_4:-7434385 Msa0667220:three_prime_UTR
CATTATGACCTTCTGTTATG+AGG 0.384606 4_4:-7434534 Msa0667220:exon
CAGAAGTGAAACTCTGAGTA+TGG 0.384691 4_4:+7434447 None:intergenic
CAAATGATAATTAGCCTAAT+GGG 0.384846 4_4:+7434371 None:intergenic
CTCATAACAGAAGGTCATAA+TGG 0.393100 4_4:+7434535 None:intergenic
GCAGCATAGAGGCGGTGGTC+GGG 0.413029 4_4:-7434649 Msa0667220:intron
CGGCTACCCATCACACATTC+GGG 0.413956 4_4:+7434266 None:intergenic
GCGGCTACCCATCACACATT+CGG 0.420843 4_4:+7434265 None:intergenic
ACGGTGTCTGTTTCGTGCTC+TGG 0.421987 4_4:-7436283 Msa0667220:intron
GGGAGGAGAATCAGAACTAT+TGG 0.442300 4_4:-7435167 Msa0667220:intron
AATTCAAGCTTATTTGGTGT+TGG 0.442709 4_4:-7437543 Msa0667220:CDS
TTTAAATTCACTTCCATACT+CGG 0.461333 4_4:+7434605 None:intergenic
ATTCTTAAGCAGTTGAAAGA+TGG 0.469119 4_4:-7437627 Msa0667220:CDS
ATCAACCGTGACGGCAATGA+TGG 0.474613 4_4:+7435332 None:intergenic
TTAAGGCATACCTCATGCTC+TGG 0.476452 4_4:+7434777 None:intergenic
CAGCATAGAGGCGGTGGTCG+GGG 0.476465 4_4:-7434648 Msa0667220:CDS
ATTTGAGATTGTTTCTTCAC+CGG 0.481993 4_4:-7437595 Msa0667220:CDS
CGAGAAACAACTGAAGCAAC+CGG 0.497549 4_4:+7437576 None:intergenic
TCTAAAACACACCGTTGTAA+AGG 0.503080 4_4:+7435306 None:intergenic
TCACTTCCATACTCGGCAAT+CGG 0.507697 4_4:+7434612 None:intergenic
TAACACAGATGAACTAAGAA+TGG 0.521962 4_4:-7435409 Msa0667220:intron
AGGAATTGGAACTGAGATGA+AGG 0.527566 4_4:+7437789 None:intergenic
CAAAGGAATGGCTCACAACA+AGG 0.527955 4_4:-7435710 Msa0667220:CDS
GAAGCTATATGTGAAAATGT+AGG 0.546789 4_4:-7435378 Msa0667220:CDS
AGTTTGATAATTTATAATTG+GGG 0.550558 4_4:-7434306 Msa0667220:three_prime_UTR
TTTGGTACCCGAATGTGTGA+TGG 0.567959 4_4:-7434273 Msa0667220:three_prime_UTR
TGCAGCATAGAGGCGGTGGT+CGG 0.570182 4_4:-7434650 Msa0667220:intron
GTTCGATGAAATCAGGTCAA+AGG 0.573936 4_4:-7435727 Msa0667220:intron
GGGCAACCTGATTTCTGGGG+AGG 0.583375 4_4:-7435184 Msa0667220:CDS
ATGAAATCAGGTCAAAGGAA+TGG 0.584616 4_4:-7435722 Msa0667220:intron
AGGAATTGTATCGGCGAAGG+AGG 0.586453 4_4:-7434514 Msa0667220:three_prime_UTR
TGTGAGAGTATCTACGCTAG+TGG 0.587204 4_4:+7434405 None:intergenic
AGAAGCCATCATTGCCGTCA+CGG 0.595204 4_4:-7435337 Msa0667220:CDS
TTCCAATTCCTCAAACTCCA+TGG 0.599102 4_4:-7437777 Msa0667220:exon
TTGGTACCCGAATGTGTGAT+GGG 0.600266 4_4:-7434272 Msa0667220:three_prime_UTR
AATGGCTCACAACAAGGGAA+TGG 0.600900 4_4:-7435704 Msa0667220:CDS
ATGAGGAATTGTATCGGCGA+AGG 0.604741 4_4:-7434517 Msa0667220:exon
TCTACGCTAGTGGGAAAACA+AGG 0.604879 4_4:+7434415 None:intergenic
GATTCATTGATGGAATATTG+CGG 0.605902 4_4:+7434246 None:intergenic
AAAATGCAGCATAGAGGCGG+TGG 0.608132 4_4:-7434654 Msa0667220:intron
GTTCAGAAGGTTACAGGCGA+CGG 0.614816 4_4:-7436306 Msa0667220:CDS
TTTGCTGCAGTTACTGCAGG+CGG 0.617614 4_4:-7435210 Msa0667220:intron
ATACAATTCCTCATAACAGA+AGG 0.623406 4_4:+7434526 None:intergenic
TCTGTTATGAGGAATTGTAT+CGG 0.624608 4_4:-7434523 Msa0667220:exon
CGCGAGGAGAGAGAAAATGC+AGG 0.629042 4_4:-7435670 Msa0667220:intron
GTGAGAGTATCTACGCTAGT+GGG 0.632214 4_4:+7434406 None:intergenic
TGTGTACATACCAGAGCATG+AGG 0.636499 4_4:-7434787 Msa0667220:intron
TGATAATTAGCCTAATGGGA+AGG 0.650064 4_4:+7434375 None:intergenic
AGAAGGTTACAGGCGACGGA+CGG 0.652941 4_4:-7436302 Msa0667220:CDS
ATTGGGCAACCTGATTTCTG+GGG 0.653227 4_4:-7435187 Msa0667220:CDS
TAAAGGCTCATCAACCGTGA+CGG 0.660842 4_4:+7435323 None:intergenic
AAAGGAATGGCTCACAACAA+GGG 0.664021 4_4:-7435709 Msa0667220:CDS
ATGGCGCAAAAGCTTCTCAA+CGG 0.671372 4_4:-7437758 Msa0667220:intron
AATGGCTCTTAACCAACGCG+AGG 0.698050 4_4:-7435686 Msa0667220:CDS
CGGTTGATGAGCCTTTACAA+CGG 0.717115 4_4:-7435317 Msa0667220:intron
GCTGTGAGGCTATTGTTCAG+CGG 0.720718 4_4:-7434564 Msa0667220:CDS
GTTCTAGCAGAAAAGCTGTG+AGG 0.757620 4_4:-7434578 Msa0667220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTAATTTCACTTTTTT+GGG - chr4_4:7434397-7434416 Msa0667220:three_prime_UTR 10.0%
!! AAACTAACTTATAATAATTT+GGG + chr4_4:7437522-7437541 None:intergenic 10.0%
!!! TTAGTTTGATAATTTATAAT+TGG - chr4_4:7437535-7437554 Msa0667220:CDS 10.0%
!!! TAGTTTGATAATTTATAATT+GGG - chr4_4:7437536-7437555 Msa0667220:CDS 10.0%
!!! TAATAAAGATTGAATTTTGT+TGG + chr4_4:7434384-7434403 None:intergenic 15.0%
!!! CTTTATTAATTTCACTTTTT+TGG - chr4_4:7434396-7434415 Msa0667220:three_prime_UTR 15.0%
!!! TAATCTTTTTTATCTTTTGT+TGG - chr4_4:7435250-7435269 Msa0667220:intron 15.0%
!!! AATCTTTTTTATCTTTTGTT+GGG - chr4_4:7435251-7435270 Msa0667220:intron 15.0%
!! ATTAAGAAAATAGTTCAAAT+TGG + chr4_4:7435424-7435443 None:intergenic 15.0%
!!! ATTTTATTTTAATAAGCTTC+TGG - chr4_4:7435762-7435781 Msa0667220:intron 15.0%
!!! AGTTGTTCAAATTAATTTTA+GGG - chr4_4:7436077-7436096 Msa0667220:intron 15.0%
!! ATAAAAATAAAAAGATACGA+AGG + chr4_4:7436337-7436356 None:intergenic 15.0%
!!! ATTCAGTTAAAAGTAATTTT+CGG + chr4_4:7436934-7436953 None:intergenic 15.0%
!!! AAACTAAGTATTGTTTTTTA+AGG + chr4_4:7437086-7437105 None:intergenic 15.0%
!! CAAACTAACTTATAATAATT+TGG + chr4_4:7437523-7437542 None:intergenic 15.0%
!!! AGTTTGATAATTTATAATTG+GGG - chr4_4:7437537-7437556 Msa0667220:CDS 15.0%
!!! TTAAAATTTTGATTCATTGA+TGG + chr4_4:7437610-7437629 None:intergenic 15.0%
!! ATTAGCAGTGTTAAAAAATT+AGG + chr4_4:7434150-7434169 None:intergenic 20.0%
!! TTATAAGTTTGATTAATCCA+GGG + chr4_4:7434831-7434850 None:intergenic 20.0%
!! TTTATAAGTTTGATTAATCC+AGG + chr4_4:7434832-7434851 None:intergenic 20.0%
!!! GTCATTTTCTCAAAATTTAT+CGG + chr4_4:7434998-7435017 None:intergenic 20.0%
!! ACTAACAAAAGATATACTAA+AGG - chr4_4:7435137-7435156 Msa0667220:intron 20.0%
!!! TTGTAATTTTGATACATTCA+AGG - chr4_4:7435166-7435185 Msa0667220:intron 20.0%
!!! GAGTTGTTCAAATTAATTTT+AGG - chr4_4:7436076-7436095 Msa0667220:intron 20.0%
!!! AGATCTTAATTTTCTGTTAA+TGG + chr4_4:7436565-7436584 None:intergenic 20.0%
!! TTTGTATTTAATGCAAAGAT+TGG - chr4_4:7436601-7436620 Msa0667220:intron 20.0%
!! ACTAAATAGAGTTTCTTATT+TGG - chr4_4:7436749-7436768 Msa0667220:intron 20.0%
!!! GGTCTATCTAATATTTTATA+AGG - chr4_4:7437114-7437133 Msa0667220:intron 20.0%
!! TATGGAAGTGAATTTAAAAA+GGG - chr4_4:7437243-7437262 Msa0667220:intron 20.0%
!! ATAAGTACTTATTGTCATAT+TGG + chr4_4:7437725-7437744 None:intergenic 20.0%
!! TATGACAATAAGTACTTATA+TGG - chr4_4:7437726-7437745 Msa0667220:intron 20.0%
! TTTGCATGAATGTGTAATTA+GGG - chr4_4:7434458-7434477 Msa0667220:three_prime_UTR 25.0%
!! TTTGTTAGTGATAATTTGCA+TGG + chr4_4:7435126-7435145 None:intergenic 25.0%
!!! ACAATCATTTTGATCCATAA+AGG + chr4_4:7435214-7435233 None:intergenic 25.0%
!! GGTGAATAAATCTAAAACAA+AGG + chr4_4:7435604-7435623 None:intergenic 25.0%
! TACATCAATTGGATTAAAGA+CGG + chr4_4:7435971-7435990 None:intergenic 25.0%
!!! CAAATTAATTTTAGGGTAAG+CGG - chr4_4:7436084-7436103 Msa0667220:intron 25.0%
! TGAAAGCAAAACAAACAAAA+GGG + chr4_4:7436237-7436256 None:intergenic 25.0%
! TGGGAAAAATAAAGGTTATA+AGG + chr4_4:7436368-7436387 None:intergenic 25.0%
! AAAGTGAATGGGAAAAATAA+AGG + chr4_4:7436376-7436395 None:intergenic 25.0%
! GAAATGAAAACAAAGTGAAT+GGG + chr4_4:7436387-7436406 None:intergenic 25.0%
! AACAGAAAATTAAGATCTTG+AGG - chr4_4:7436567-7436586 Msa0667220:intron 25.0%
!! CAATACTTAGTTTGATCATT+TGG - chr4_4:7437093-7437112 Msa0667220:intron 25.0%
! TTTAAATTCACTTCCATACT+CGG + chr4_4:7437241-7437260 None:intergenic 25.0%
! GTATGGAAGTGAATTTAAAA+AGG - chr4_4:7437242-7437261 Msa0667220:intron 25.0%
!! CAAATGATAATTAGCCTAAT+GGG + chr4_4:7437475-7437494 None:intergenic 25.0%
!! TCAAATGATAATTAGCCTAA+TGG + chr4_4:7437476-7437495 None:intergenic 25.0%
ATTCTTAAGCAGTTGAAAGA+TGG - chr4_4:7434216-7434235 Msa0667220:three_prime_UTR 30.0%
! ATTTGAGATTGTTTCTTCAC+CGG - chr4_4:7434248-7434267 Msa0667220:three_prime_UTR 30.0%
AATCGGAATTCAAGCTTATT+TGG - chr4_4:7434294-7434313 Msa0667220:three_prime_UTR 30.0%
!! AATTCAAGCTTATTTGGTGT+TGG - chr4_4:7434300-7434319 Msa0667220:three_prime_UTR 30.0%
CTAATTACACATTCATGCAA+AGG + chr4_4:7434459-7434478 None:intergenic 30.0%
CTTTGCATGAATGTGTAATT+AGG - chr4_4:7434457-7434476 Msa0667220:three_prime_UTR 30.0%
TAATTAGGGTCTCTTTGAAT+TGG - chr4_4:7434472-7434491 Msa0667220:three_prime_UTR 30.0%
CTGAAAACATCTTATAAGCA+GGG + chr4_4:7434544-7434563 None:intergenic 30.0%
GCTGAAAAAGAAAACTATCT+TGG + chr4_4:7434585-7434604 None:intergenic 30.0%
TTGTGCTATAAGCTGAAAAT+AGG - chr4_4:7434670-7434689 Msa0667220:intron 30.0%
AATAGGTTGTTAATCCAAAC+AGG - chr4_4:7434687-7434706 Msa0667220:intron 30.0%
ATAAAAATAAGCCTCCTGTT+TGG + chr4_4:7434704-7434723 None:intergenic 30.0%
AGCAAGAATCAGAAAACAAA+AGG + chr4_4:7434737-7434756 None:intergenic 30.0%
!! ACCATTTTAGTACTTAGATG+TGG - chr4_4:7434787-7434806 Msa0667220:intron 30.0%
ACCACATCTAAGTACTAAAA+TGG + chr4_4:7434791-7434810 None:intergenic 30.0%
! TTTTAGTACTTAGATGTGGT+AGG - chr4_4:7434791-7434810 Msa0667220:CDS 30.0%
! CTTCTGTTGATTATGAAACA+CGG - chr4_4:7434931-7434950 Msa0667220:intron 30.0%
TTCTCAAAATTTATCGGTGT+TGG + chr4_4:7434992-7435011 None:intergenic 30.0%
TTCAATGTAATCACAAGTGT+CGG - chr4_4:7435022-7435041 Msa0667220:intron 30.0%
GACATAAAATCAAGCCTTTA+TGG - chr4_4:7435197-7435216 Msa0667220:CDS 30.0%
!! CGTTGATAGTGTTGAATATA+AGG - chr4_4:7435332-7435351 Msa0667220:CDS 30.0%
!!! GTGATAAAGCTACTTTTCTT+AGG + chr4_4:7435393-7435412 None:intergenic 30.0%
! TTTTCTGTGGCTATTAATCT+GGG + chr4_4:7435830-7435849 None:intergenic 30.0%
!!! CTACTTGATAATGTTTTCTG+TGG + chr4_4:7435843-7435862 None:intergenic 30.0%
CACAGAAAACATTATCAAGT+AGG - chr4_4:7435841-7435860 Msa0667220:intron 30.0%
TTTGTTTAGACTGACAGATT+TGG + chr4_4:7436003-7436022 None:intergenic 30.0%
GATATACTAGCAATAAGACA+TGG - chr4_4:7436202-7436221 Msa0667220:intron 30.0%
GAAAGCAAAACAAACAAAAG+GGG + chr4_4:7436236-7436255 None:intergenic 30.0%
CTGAAAGCAAAACAAACAAA+AGG + chr4_4:7436238-7436257 None:intergenic 30.0%
!!! GTTTGTTTTGCTTTCAGTTA+AGG - chr4_4:7436241-7436260 Msa0667220:intron 30.0%
GGAAATGAAAACAAAGTGAA+TGG + chr4_4:7436388-7436407 None:intergenic 30.0%
TAGTTCATCTGTGTTATCAT+GGG + chr4_4:7436430-7436449 None:intergenic 30.0%
TTAGTTCATCTGTGTTATCA+TGG + chr4_4:7436431-7436450 None:intergenic 30.0%
TAACACAGATGAACTAAGAA+TGG - chr4_4:7436434-7436453 Msa0667220:intron 30.0%
GAAGCTATATGTGAAAATGT+AGG - chr4_4:7436465-7436484 Msa0667220:intron 30.0%
AGAAACTCTATTTAGTCCTT+AGG + chr4_4:7436745-7436764 None:intergenic 30.0%
!!! CGGTCTTTTAAAATTCACAT+CGG + chr4_4:7436854-7436873 None:intergenic 30.0%
TCTGGTATGTACACAATAAT+TGG + chr4_4:7437051-7437070 None:intergenic 30.0%
AAACTAAAAATGCAGCATAG+AGG - chr4_4:7437183-7437202 Msa0667220:intron 30.0%
ATACAATTCCTCATAACAGA+AGG + chr4_4:7437320-7437339 None:intergenic 30.0%
TCTGTTATGAGGAATTGTAT+CGG - chr4_4:7437320-7437339 Msa0667220:intron 30.0%
ACATTAATTACCTTCCCATT+AGG - chr4_4:7437458-7437477 Msa0667220:intron 30.0%
! AATTGGGGTAATAGTCATTT+TGG - chr4_4:7437552-7437571 Msa0667220:CDS 30.0%
GATTCATTGATGGAATATTG+CGG + chr4_4:7437600-7437619 None:intergenic 30.0%
!! CAGTTGTTTCTCGGTTTAAT+CGG - chr4_4:7434277-7434296 Msa0667220:three_prime_UTR 35.0%
!!! ACTCACTTTTTCGCTAGAAT+TGG - chr4_4:7434333-7434352 Msa0667220:three_prime_UTR 35.0%
GCTGAAAACATCTTATAAGC+AGG + chr4_4:7434545-7434564 None:intergenic 35.0%
!!! AGGCTTATTTTTATACCCCA+CGG - chr4_4:7434710-7434729 Msa0667220:intron 35.0%
ATCATTGAATGTGTCTATCG+TGG - chr4_4:7434854-7434873 Msa0667220:intron 35.0%
ATAGTTCAAATTGGACTCAC+TGG + chr4_4:7435415-7435434 None:intergenic 35.0%
GAATTCTGATGAGTTGTGTT+TGG - chr4_4:7435450-7435469 Msa0667220:intron 35.0%
! TTTTCAGTTCAGAAGGTTAC+AGG - chr4_4:7435531-7435550 Msa0667220:intron 35.0%
AAAATCTAACTCCAGAATCG+AGG + chr4_4:7435739-7435758 None:intergenic 35.0%
! GTTTTCTGTGGCTATTAATC+TGG + chr4_4:7435831-7435850 None:intergenic 35.0%
ATTTGAACAACTCGCTATTG+TGG + chr4_4:7436069-7436088 None:intergenic 35.0%
ATGAAATCAGGTCAAAGGAA+TGG - chr4_4:7436121-7436140 Msa0667220:intron 35.0%
! AACGTGTGTATGTAGTTTTC+CGG - chr4_4:7436286-7436305 Msa0667220:CDS 35.0%
AGATACGAAGGTAAGTATCT+CGG + chr4_4:7436325-7436344 None:intergenic 35.0%
GGCAAGTCAAAACATAGAAA+AGG + chr4_4:7436409-7436428 None:intergenic 35.0%
! TCTAAAACACACCGTTGTAA+AGG + chr4_4:7436540-7436559 None:intergenic 35.0%
AGGAGATAATAATGCAAGCA+TGG + chr4_4:7436725-7436744 None:intergenic 35.0%
GCTTGCATTATTATCTCCTA+AGG - chr4_4:7436726-7436745 Msa0667220:intron 35.0%
!! GTTTCATCTGTTGACTCATT+CGG + chr4_4:7436874-7436893 None:intergenic 35.0%
! GACATGAATTTTCATTCCCA+GGG + chr4_4:7436979-7436998 None:intergenic 35.0%
AAAGAATATGGACATTGGTC+GGG + chr4_4:7437001-7437020 None:intergenic 35.0%
GAAAGAATATGGACATTGGT+CGG + chr4_4:7437002-7437021 None:intergenic 35.0%
ACCAATGTCCATATTCTTTC+AGG - chr4_4:7437002-7437021 Msa0667220:intron 35.0%
ACCTGAAAGAATATGGACAT+TGG + chr4_4:7437006-7437025 None:intergenic 35.0%
TGACAGTACCTGAAAGAATA+TGG + chr4_4:7437013-7437032 None:intergenic 35.0%
CTCATAACAGAAGGTCATAA+TGG + chr4_4:7437311-7437330 None:intergenic 35.0%
CATTATGACCTTCTGTTATG+AGG - chr4_4:7437309-7437328 Msa0667220:intron 35.0%
! TGATAATTAGCCTAATGGGA+AGG + chr4_4:7437471-7437490 None:intergenic 35.0%
TTCCAATTCCTCAAACTCCA+TGG - chr4_4:7434066-7434085 Msa0667220:three_prime_UTR 40.0%
GACATTTGAATCCTCAGACT+CGG - chr4_4:7434179-7434198 Msa0667220:three_prime_UTR 40.0%
AGCTTATCTACTGCTATGAC+TGG - chr4_4:7434503-7434522 Msa0667220:three_prime_UTR 40.0%
AGGTTGTTAATCCAAACAGG+AGG - chr4_4:7434690-7434709 Msa0667220:intron 40.0%
!!! GGCTTATTTTTATACCCCAC+GGG - chr4_4:7434711-7434730 Msa0667220:intron 40.0%
TTCTCCTTATGTTCTCACAG+TGG - chr4_4:7435474-7435493 Msa0667220:intron 40.0%
! TGAACGCTTTTCAGTTCAGA+AGG - chr4_4:7435524-7435543 Msa0667220:intron 40.0%
GCTCAGCTACATAACTGAAA+AGG + chr4_4:7435625-7435644 None:intergenic 40.0%
!! AGACGGATTGTGTCATTAGA+TGG + chr4_4:7435954-7435973 None:intergenic 40.0%
GGTGAGACTGATACATCAAT+TGG + chr4_4:7435982-7436001 None:intergenic 40.0%
GTGGAAGCTCAAACTAATGA+AGG + chr4_4:7436050-7436069 None:intergenic 40.0%
!! ACAGTTGGTTCGATGAAATC+AGG - chr4_4:7436109-7436128 Msa0667220:intron 40.0%
GTTCGATGAAATCAGGTCAA+AGG - chr4_4:7436116-7436135 Msa0667220:intron 40.0%
AAAGGAATGGCTCACAACAA+GGG - chr4_4:7436134-7436153 Msa0667220:intron 40.0%
! TATTTTGCTGCAGTTACTGC+AGG - chr4_4:7436630-7436649 Msa0667220:intron 40.0%
TGAACTCATGTGAAAACCCT+GGG - chr4_4:7436960-7436979 Msa0667220:intron 40.0%
! GGACATGAATTTTCATTCCC+AGG + chr4_4:7436980-7436999 None:intergenic 40.0%
CTAAAAATGCAGCATAGAGG+CGG - chr4_4:7437186-7437205 Msa0667220:intron 40.0%
CAGAAGTGAAACTCTGAGTA+TGG + chr4_4:7437399-7437418 None:intergenic 40.0%
ATGGCGCAAAAGCTTCTCAA+CGG - chr4_4:7434085-7434104 Msa0667220:intron 45.0%
ATCATCATTCTCCGAGTCTG+AGG + chr4_4:7434193-7434212 None:intergenic 45.0%
CGAGAAACAACTGAAGCAAC+CGG + chr4_4:7434270-7434289 None:intergenic 45.0%
!! CGGTTGCTTCAGTTGTTTCT+CGG - chr4_4:7434268-7434287 Msa0667220:three_prime_UTR 45.0%
TCAGAAAACAAAAGGCCCGT+GGG + chr4_4:7434729-7434748 None:intergenic 45.0%
ATCAGAAAACAAAAGGCCCG+TGG + chr4_4:7434730-7434749 None:intergenic 45.0%
! AGGTGATGATGTATAGTCCC+TGG - chr4_4:7434811-7434830 Msa0667220:CDS 45.0%
ATGAAACACGGACACAGACT+CGG - chr4_4:7434943-7434962 Msa0667220:intron 45.0%
ACCAACAGACTTTGTTGCAC+CGG + chr4_4:7435094-7435113 None:intergenic 45.0%
TCTATTTGCCTCAATGCCTG+AGG - chr4_4:7435289-7435308 Msa0667220:intron 45.0%
CTATTTGCCTCAATGCCTGA+GGG - chr4_4:7435290-7435309 Msa0667220:intron 45.0%
TATTTGCCTCAATGCCTGAG+GGG - chr4_4:7435291-7435310 Msa0667220:intron 45.0%
!! CTGTAATTCTGAAACCCCTC+AGG + chr4_4:7435308-7435327 None:intergenic 45.0%
TCCTTATGTTCTCACAGTGG+TGG - chr4_4:7435477-7435496 Msa0667220:intron 45.0%
TCCACCACTGTGAGAACATA+AGG + chr4_4:7435481-7435500 None:intergenic 45.0%
TTCAGTTATGTAGCTGAGCG+CGG - chr4_4:7435626-7435645 Msa0667220:intron 45.0%
TTGTTCAACTGCCTCGATTC+TGG - chr4_4:7435725-7435744 Msa0667220:intron 45.0%
TTAGGGTAAGCGGTAACAGT+TGG - chr4_4:7436094-7436113 Msa0667220:intron 45.0%
CAAAGGAATGGCTCACAACA+AGG - chr4_4:7436133-7436152 Msa0667220:intron 45.0%
AATGGCTCACAACAAGGGAA+TGG - chr4_4:7436139-7436158 Msa0667220:intron 45.0%
TCTCGGCTCAATAGTTGAAC+CGG + chr4_4:7436308-7436327 None:intergenic 45.0%
TAAAGGCTCATCAACCGTGA+CGG + chr4_4:7436523-7436542 None:intergenic 45.0%
!! CGGTTGATGAGCCTTTACAA+CGG - chr4_4:7436526-7436545 Msa0667220:intron 45.0%
GATTGGGCAACCTGATTTCT+GGG - chr4_4:7436655-7436674 Msa0667220:intron 45.0%
ATTGGGCAACCTGATTTCTG+GGG - chr4_4:7436656-7436675 Msa0667220:intron 45.0%
GGGAGGAGAATCAGAACTAT+TGG - chr4_4:7436676-7436695 Msa0667220:intron 45.0%
CTGAACTCATGTGAAAACCC+TGG - chr4_4:7436959-7436978 Msa0667220:intron 45.0%
TGTGTACATACCAGAGCATG+AGG - chr4_4:7437056-7437075 Msa0667220:intron 45.0%
TTAAGGCATACCTCATGCTC+TGG + chr4_4:7437069-7437088 None:intergenic 45.0%
TTCATTCCGATTGCCGAGTA+TGG - chr4_4:7437225-7437244 Msa0667220:intron 45.0%
TCACTTCCATACTCGGCAAT+CGG + chr4_4:7437234-7437253 None:intergenic 45.0%
GTTCTAGCAGAAAAGCTGTG+AGG - chr4_4:7437265-7437284 Msa0667220:intron 45.0%
! ATGAGGAATTGTATCGGCGA+AGG - chr4_4:7437326-7437345 Msa0667220:intron 45.0%
TCTACGCTAGTGGGAAAACA+AGG + chr4_4:7437431-7437450 None:intergenic 45.0%
!! GTGAGAGTATCTACGCTAGT+GGG + chr4_4:7437440-7437459 None:intergenic 45.0%
!! TGTGAGAGTATCTACGCTAG+TGG + chr4_4:7437441-7437460 None:intergenic 45.0%
TTTGGTACCCGAATGTGTGA+TGG - chr4_4:7437570-7437589 Msa0667220:CDS 45.0%
TTGGTACCCGAATGTGTGAT+GGG - chr4_4:7437571-7437590 Msa0667220:CDS 45.0%
!! AAATATAAAAATTGATAAAA+AGG + chr4_4:7435673-7435692 None:intergenic 5.0%
CGCCATGGAGTTTGAGGAAT+TGG + chr4_4:7434071-7434090 None:intergenic 50.0%
! CTTTTGCGCCATGGAGTTTG+AGG + chr4_4:7434077-7434096 None:intergenic 50.0%
! GTTGAGAAGCTTTTGCGCCA+TGG + chr4_4:7434086-7434105 None:intergenic 50.0%
CAGAAAACAAAAGGCCCGTG+GGG + chr4_4:7434728-7434747 None:intergenic 50.0%
!! CACAAGTGTCGGTGTCTTGT+CGG - chr4_4:7435033-7435052 Msa0667220:intron 50.0%
GTTCAGAAGGTTACAGGCGA+CGG - chr4_4:7435537-7435556 Msa0667220:intron 50.0%
TCAGTTATGTAGCTGAGCGC+GGG - chr4_4:7435627-7435646 Msa0667220:intron 50.0%
AATGGCTCTTAACCAACGCG+AGG - chr4_4:7436157-7436176 Msa0667220:intron 50.0%
! CATTTTCTCTCTCCTCGCGT+TGG + chr4_4:7436172-7436191 None:intergenic 50.0%
AGAAGCCATCATTGCCGTCA+CGG - chr4_4:7436506-7436525 Msa0667220:intron 50.0%
ATCAACCGTGACGGCAATGA+TGG + chr4_4:7436514-7436533 None:intergenic 50.0%
TTTGCTGCAGTTACTGCAGG+CGG - chr4_4:7436633-7436652 Msa0667220:intron 50.0%
GGATTGGGCAACCTGATTTC+TGG - chr4_4:7436654-7436673 Msa0667220:intron 50.0%
GATTCTCCTCCCCAGAAATC+AGG + chr4_4:7436668-7436687 None:intergenic 50.0%
AAAATGCAGCATAGAGGCGG+TGG - chr4_4:7437189-7437208 Msa0667220:intron 50.0%
GCTGTGAGGCTATTGTTCAG+CGG - chr4_4:7437279-7437298 Msa0667220:intron 50.0%
! AGGAATTGTATCGGCGAAGG+AGG - chr4_4:7437329-7437348 Msa0667220:intron 50.0%
! TGTCGGTGTCTTGTCGGTGT+CGG - chr4_4:7435039-7435058 Msa0667220:intron 55.0%
GCCGGTGCAACAAAGTCTGT+TGG - chr4_4:7435090-7435109 Msa0667220:intron 55.0%
! CTGAAACCCCTCAGGCATTG+AGG + chr4_4:7435300-7435319 None:intergenic 55.0%
AGAAGGTTACAGGCGACGGA+CGG - chr4_4:7435541-7435560 Msa0667220:intron 55.0%
ACGGTGTCTGTTTCGTGCTC+TGG - chr4_4:7435560-7435579 Msa0667220:intron 55.0%
CGCGAGGAGAGAGAAAATGC+AGG - chr4_4:7436173-7436192 Msa0667220:intron 55.0%
TGCAGTTACTGCAGGCGGAT+TGG - chr4_4:7436638-7436657 Msa0667220:intron 55.0%
! GCAGTTACTGCAGGCGGATT+GGG - chr4_4:7436639-7436658 Msa0667220:intron 55.0%
CGGCTACCCATCACACATTC+GGG + chr4_4:7437580-7437599 None:intergenic 55.0%
GCGGCTACCCATCACACATT+CGG + chr4_4:7437581-7437600 None:intergenic 55.0%
TGGCGTGTCAACGTCGTGTC+TGG + chr4_4:7434972-7434991 None:intergenic 60.0%
!! TCTTGTCGGTGTCGGACACC+AGG - chr4_4:7435047-7435066 Msa0667220:intron 60.0%
ACCAGGACACGCCTTCCATC+AGG - chr4_4:7435064-7435083 Msa0667220:intron 60.0%
! TCCTGATGGAAGGCGTGTCC+TGG + chr4_4:7435068-7435087 None:intergenic 60.0%
! ACGCCTTCCATCAGGAGTGC+CGG - chr4_4:7435072-7435091 Msa0667220:intron 60.0%
! TGTTGCACCGGCACTCCTGA+TGG + chr4_4:7435082-7435101 None:intergenic 60.0%
ATGTAGCTGAGCGCGGGTTC+TGG - chr4_4:7435633-7435652 Msa0667220:intron 60.0%
! GGGCAACCTGATTTCTGGGG+AGG - chr4_4:7436659-7436678 Msa0667220:intron 60.0%
TGCAGCATAGAGGCGGTGGT+CGG - chr4_4:7437193-7437212 Msa0667220:intron 60.0%
! GCACCGGCACTCCTGATGGA+AGG + chr4_4:7435078-7435097 None:intergenic 65.0%
! AGCTGAGCGCGGGTTCTGGT+TGG - chr4_4:7435637-7435656 Msa0667220:intron 65.0%
GCAGCATAGAGGCGGTGGTC+GGG - chr4_4:7437194-7437213 Msa0667220:intron 65.0%
CAGCATAGAGGCGGTGGTCG+GGG - chr4_4:7437195-7437214 Msa0667220:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 7434055 7437810 7434055 ID=Msa0667220;Name=Msa0667220
chr4_4 mRNA 7434055 7437810 7434055 ID=Msa0667220-mRNA-1;Parent=Msa0667220;Name=Msa0667220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=30|1|1|1|0.87|0.77|9|453|229
chr4_4 exon 7434055 7434100 7434055 ID=Msa0667220-mRNA-1:exon:2457;Parent=Msa0667220-mRNA-1
chr4_4 exon 7434129 7434667 7434129 ID=Msa0667220-mRNA-1:exon:2456;Parent=Msa0667220-mRNA-1
chr4_4 exon 7434788 7434841 7434788 ID=Msa0667220-mRNA-1:exon:2455;Parent=Msa0667220-mRNA-1
chr4_4 exon 7435168 7435222 7435168 ID=Msa0667220-mRNA-1:exon:2454;Parent=Msa0667220-mRNA-1
chr4_4 exon 7435318 7435423 7435318 ID=Msa0667220-mRNA-1:exon:2453;Parent=Msa0667220-mRNA-1
chr4_4 exon 7435671 7435734 7435671 ID=Msa0667220-mRNA-1:exon:2452;Parent=Msa0667220-mRNA-1
chr4_4 exon 7436284 7436371 7436284 ID=Msa0667220-mRNA-1:exon:2451;Parent=Msa0667220-mRNA-1
chr4_4 exon 7437501 7437669 7437501 ID=Msa0667220-mRNA-1:exon:2450;Parent=Msa0667220-mRNA-1
chr4_4 exon 7437759 7437810 7437759 ID=Msa0667220-mRNA-1:exon:2449;Parent=Msa0667220-mRNA-1
chr4_4 five_prime_UTR 7437781 7437810 7437781 ID=Msa0667220-mRNA-1:five_prime_utr;Parent=Msa0667220-mRNA-1
chr4_4 CDS 7437759 7437780 7437759 ID=Msa0667220-mRNA-1:cds;Parent=Msa0667220-mRNA-1
chr4_4 CDS 7437501 7437669 7437501 ID=Msa0667220-mRNA-1:cds;Parent=Msa0667220-mRNA-1
chr4_4 CDS 7436284 7436371 7436284 ID=Msa0667220-mRNA-1:cds;Parent=Msa0667220-mRNA-1
chr4_4 CDS 7435671 7435734 7435671 ID=Msa0667220-mRNA-1:cds;Parent=Msa0667220-mRNA-1
chr4_4 CDS 7435318 7435423 7435318 ID=Msa0667220-mRNA-1:cds;Parent=Msa0667220-mRNA-1
chr4_4 CDS 7435168 7435222 7435168 ID=Msa0667220-mRNA-1:cds;Parent=Msa0667220-mRNA-1
chr4_4 CDS 7434788 7434841 7434788 ID=Msa0667220-mRNA-1:cds;Parent=Msa0667220-mRNA-1
chr4_4 CDS 7434536 7434667 7434536 ID=Msa0667220-mRNA-1:cds;Parent=Msa0667220-mRNA-1
chr4_4 three_prime_UTR 7434129 7434535 7434129 ID=Msa0667220-mRNA-1:three_prime_utr;Parent=Msa0667220-mRNA-1
chr4_4 three_prime_UTR 7434055 7434100 7434055 ID=Msa0667220-mRNA-1:three_prime_utr;Parent=Msa0667220-mRNA-1
Gene Sequence

>Msa0667220

ATGGCGCAAAAGCTTCTCAACGACTCGGAGAATGATGATAACATTCTTAAGCAGTTGAAAGATGGTACAGCAAAATTTGAGATTGTTTCTTCACCGGTTGCTTCAGTTGTTTCTCGGTTTAATCGGAATTCAAGCTTATTTGGTGTTGGAAATTGTAGCACTCACTTTTTCGCTAGAATTGGTTCATCACTTGGTGGACAGTCTGCAGCAATGAAGAAACTTGAACGCTTTTCAGTTCAGAAGGTTACAGGCGACGGACGGTGTCTGTTTCGTGCTCTGGTCAAAGGAATGGCTCACAACAAGGGAATGGCTCTTAACCAACGCGAGGAGAGAGAAAATGCAGATGAACTAAGAATGGCAGTCAAAGAAGCTATATGTGAAAATGTAGGAGATCGCAAGTTATATGAAGAAGCCATCATTGCCGTCACGGTTGATGAGCCTTTACAACGTTACTGCAGGCGGATTGGGCAACCTGATTTCTGGGGAGGAGAATCAGAACTATTGGTACTGTCAAAGTTATGTAAGCAGCCAATTATTGTGTACATACCAGAGCATGAGCATAGAGGCGGTGGTCGGGGATCTGATTTCATTCCGATTGCCGAGTATGGAAGTGAATTTAAAAAGGGTTCTAGCAGAAAAGCTGTGAGGCTATTGTTCAGCGGTAAAAACCATTATGACCTTCTGTTATGA

Protein sequence

>Msa0667220

MAQKLLNDSENDDNILKQLKDGTAKFEIVSSPVASVVSRFNRNSSLFGVGNCSTHFFARIGSSLGGQSAAMKKLERFSVQKVTGDGRCLFRALVKGMAHNKGMALNQREERENADELRMAVKEAICENVGDRKLYEEAIIAVTVDEPLQRYCRRIGQPDFWGGESELLVLSKLCKQPIIVYIPEHEHRGGGRGSDFIPIAEYGSEFKKGSSRKAVRLLFSGKNHYDLLL*