AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689400 MtrunA17_Chr8g0337231 90.794 315 28 1 1 314 1 315 0.0 574
Msa0689400 MtrunA17_Chr8g0337241 83.333 282 44 2 35 316 2 280 2.44e-165 461
Msa0689400 MtrunA17_Chr6g0457691 42.347 196 104 4 119 313 538 725 3.84e-42 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689400 AT5G17660.1 65.306 245 77 3 75 316 69 308 3.47e-120 348
Msa0689400 AT5G24840.1 28.512 242 128 11 99 313 23 246 5.95e-12 65.1

Find 85 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTGTAATTTA+AGG 0.065136 4_4:-56445131 Msa0689400:three_prime_UTR
ACCTAAAGTGAGAAATTATT+TGG 0.126545 4_4:-56446458 Msa0689400:CDS
CTTGCAGTTAGTTTCAATTT+TGG 0.187587 4_4:-56446075 Msa0689400:intron
CCCAAATAATTTCTCACTTT+AGG 0.263184 4_4:+56446457 None:intergenic
TCAATCACATCTGTTTCTTT+TGG 0.300643 4_4:+56445342 None:intergenic
GGTCTTGTTCAGCTGTTACT+TGG 0.321900 4_4:+56448493 None:intergenic
TAAGCAACCCTATGGGGATT+AGG 0.326313 4_4:-56445421 Msa0689400:CDS
ATTATTTGGGATTGGAAATA+CGG 0.335361 4_4:-56446444 Msa0689400:CDS
CTGCCACTCATGGTGGATAT+TGG 0.351376 4_4:-56447054 Msa0689400:CDS
TTGAAGAGAAAGAGGGGAAA+TGG 0.356944 4_4:-56448688 Msa0689400:exon
TCACTGTCACACAATATAGA+AGG 0.376117 4_4:+56445455 None:intergenic
ACCAACTGCTTGAAAGAAAT+AGG 0.378434 4_4:+56446116 None:intergenic
CGTCACAAGAAGTTAGTATA+TGG 0.384046 4_4:-56448624 Msa0689400:CDS
AGAAAAGTATGCATTCTCTT+AGG 0.387543 4_4:-56445227 Msa0689400:three_prime_UTR
TTTGTCAAATTTCAGGATAT+GGG 0.389407 4_4:-56448329 Msa0689400:intron
TACAGAGAAAGAAGAACTTA+AGG 0.390216 4_4:+56448277 None:intergenic
AGTGAGAAATTATTTGGGAT+TGG 0.396847 4_4:-56446452 Msa0689400:CDS
GTTGTGACTTATGTTGTTGT+TGG 0.400793 4_4:+56448472 None:intergenic
CCTAAAGTGAGAAATTATTT+GGG 0.400944 4_4:-56446457 Msa0689400:CDS
GAAGAAGAGAGAGGACGAAA+GGG 0.402215 4_4:+56448555 None:intergenic
GTGCATCAACTTCATCAAAC+TGG 0.411217 4_4:+56445501 None:intergenic
GTCTTGTTCAGCTGTTACTT+GGG 0.430566 4_4:+56448494 None:intergenic
TGAAGAGAAAGAGGGGAAAT+GGG 0.430964 4_4:-56448687 Msa0689400:exon
TGGTGAAGCGTGCTGAGTTA+TGG 0.441715 4_4:-56446288 Msa0689400:CDS
ATTGTAGATAATTTATCTCC+TGG 0.443117 4_4:-56445703 Msa0689400:CDS
ACCTATTTCTTTCAAGCAGT+TGG 0.457053 4_4:-56446117 Msa0689400:CDS
GGTGAAGCGTGCTGAGTTAT+GGG 0.461581 4_4:-56446287 Msa0689400:CDS
TCCACCATGAGTGGCAGAGC+AGG 0.463070 4_4:+56447060 None:intergenic
AGCTGTTACTTGGGAAATAG+AGG 0.464400 4_4:+56448503 None:intergenic
AGAAGAAGAGAGAGGACGAA+AGG 0.467431 4_4:+56448554 None:intergenic
TTGTAGATAATTTATCTCCT+GGG 0.470027 4_4:-56445702 Msa0689400:CDS
TTCCAGTCTGGTACTGGTGC+AGG 0.472779 4_4:+56447099 None:intergenic
ACAGAGAAAGAAGAACTTAA+GGG 0.478265 4_4:+56448278 None:intergenic
GGGATTGGAAATACGGCAAA+GGG 0.483148 4_4:-56446437 Msa0689400:intron
AGACCCTGCTCTGCCACTCA+TGG 0.484179 4_4:-56447064 Msa0689400:CDS
ACCTGGTTCCAGTCTGGTAC+TGG 0.484249 4_4:+56447093 None:intergenic
ATGGTTATTAAGCAACCCTA+TGG 0.492202 4_4:-56445429 Msa0689400:CDS
CTCTCGGTCCTAATCCCCAT+AGG 0.493796 4_4:+56445413 None:intergenic
TGAGTTATGGGTAAAAGATC+TGG 0.497316 4_4:-56446275 Msa0689400:CDS
GAAACTAACTGCAAGGGTCC+AGG 0.506605 4_4:+56446083 None:intergenic
GCAAACACCTGGTTCCAGTC+TGG 0.508336 4_4:+56447087 None:intergenic
TTCTGCATGAATCTCTCTCT+CGG 0.516639 4_4:+56445397 None:intergenic
GAAATAGAGGAAGAGGAGAG+TGG 0.516991 4_4:+56448516 None:intergenic
TACTTGGGAAATAGAGGAAG+AGG 0.521735 4_4:+56448509 None:intergenic
ATAAAATGTCTGCAATGGAC+AGG 0.522666 4_4:+56445298 None:intergenic
GCAGTGGTAGGTTTCTTATG+TGG 0.523016 4_4:-56446495 Msa0689400:CDS
CAGTTGGTAGAATCATATCC+TGG 0.532880 4_4:-56446101 Msa0689400:CDS
TGGTTATTAAGCAACCCTAT+GGG 0.534053 4_4:-56445428 Msa0689400:CDS
TGGGTTATTGCTGTGGAGGT+TGG 0.534304 4_4:-56448668 Msa0689400:CDS
CTCCTGCACCAGTACCAGAC+TGG 0.539916 4_4:-56447101 Msa0689400:CDS
CGGTGGGGTTGAAGAGAAAG+AGG 0.544282 4_4:-56448696 None:intergenic
GGTGAAAATGAGAGTGAGAG+TGG 0.548892 4_4:+56448576 None:intergenic
ACTCAATCTCTCTAACAACT+TGG 0.549026 4_4:-56448412 Msa0689400:intron
CAAAATTGAAACTAACTGCA+AGG 0.551890 4_4:+56446076 None:intergenic
ATGGGTAAAAGATCTGGCTC+TGG 0.555239 4_4:-56446269 Msa0689400:CDS
ACACTATAAAATGTCTGCAA+TGG 0.555855 4_4:+56445293 None:intergenic
TGTAGATAATTTATCTCCTG+GGG 0.562130 4_4:-56445701 Msa0689400:CDS
AAATAATGACAGGCAGTGGT+AGG 0.578508 4_4:-56446507 Msa0689400:intron
TGGGATTGGAAATACGGCAA+AGG 0.583272 4_4:-56446438 Msa0689400:CDS
GAGCAGGGTCTGCAAACACC+TGG 0.584261 4_4:+56447076 None:intergenic
GGGGAAATGGGTTATTGCTG+TGG 0.588504 4_4:-56448675 Msa0689400:exon
GAAATGGGTTATTGCTGTGG+AGG 0.594719 4_4:-56448672 Msa0689400:CDS
CATTCTCTTAGGATGCCTAC+CGG 0.595714 4_4:-56445216 Msa0689400:three_prime_UTR
CACTGTCACACAATATAGAA+GGG 0.596542 4_4:+56445456 None:intergenic
TCTCGGTCCTAATCCCCATA+GGG 0.597669 4_4:+56445414 None:intergenic
ACCAGTACCAGACTGGAACC+AGG 0.600428 4_4:-56447094 Msa0689400:CDS
ATATGTTCAACATCAACCAC+AGG 0.611589 4_4:-56445250 Msa0689400:three_prime_UTR
CTCATGGTGGATATTGGATG+TGG 0.615858 4_4:-56447048 Msa0689400:intron
TTCATGCAGAATTCGAAGGA+GGG 0.618770 4_4:-56445385 Msa0689400:CDS
GAGATTCATGCAGAATTCGA+AGG 0.619717 4_4:-56445389 Msa0689400:CDS
AAAATTGAAACTAACTGCAA+GGG 0.620397 4_4:+56446077 None:intergenic
CCCTGCTCTGCCACTCATGG+TGG 0.621197 4_4:-56447061 Msa0689400:CDS
AAGGAGGGAAAATCTATCGA+AGG 0.623652 4_4:-56445370 Msa0689400:CDS
CCACCATGAGTGGCAGAGCA+GGG 0.630245 4_4:+56447061 None:intergenic
ATTCATGCAGAATTCGAAGG+AGG 0.630607 4_4:-56445386 Msa0689400:CDS
GGTTATTAAGCAACCCTATG+GGG 0.641395 4_4:-56445427 Msa0689400:CDS
ACAGTCTGATGTGGTTGAAG+TGG 0.648166 4_4:-56445540 Msa0689400:CDS
CATCCAATATCCACCATGAG+TGG 0.650715 4_4:+56447051 None:intergenic
GGTATTTGTACAGTCTGATG+TGG 0.665592 4_4:-56445549 Msa0689400:CDS
TCTACAATAGCACCAACCAA+AGG 0.670279 4_4:+56445718 None:intergenic
GGTGGGGTTGAAGAGAAAGA+GGG 0.671119 4_4:-56448695 None:intergenic
TCTATATTGTGTGACAGTGA+AGG 0.673502 4_4:-56445452 Msa0689400:CDS
TATTGTGTGACAGTGAAGGA+TGG 0.681117 4_4:-56445448 Msa0689400:CDS
GTAGATAATTTATCTCCTGG+GGG 0.693547 4_4:-56445700 Msa0689400:CDS
GTGGGGTTGAAGAGAAAGAG+GGG 0.718218 4_4:-56448694 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAAATGATATTTTTAT+AGG - chr4_4:56446008-56446027 Msa0689400:intron 10.0%
!!! TAATATTTTCAGTTTAAAGT+GGG + chr4_4:56445438-56445457 None:intergenic 15.0%
!!! ATAATATTTTCAGTTTAAAG+TGG + chr4_4:56445439-56445458 None:intergenic 15.0%
!! AATAAGAATAAACTACTAAA+GGG + chr4_4:56445587-56445606 None:intergenic 15.0%
!! TATAAAACAGTTTAATACAA+TGG - chr4_4:56445637-56445656 Msa0689400:intron 15.0%
!!! TATCATTTTTTTGTTTGTTT+TGG + chr4_4:56446001-56446020 None:intergenic 15.0%
!! AACATATAACTTATAATGAA+TGG + chr4_4:56446052-56446071 None:intergenic 15.0%
!! TTCATTATAAGTTATATGTT+AGG - chr4_4:56446052-56446071 Msa0689400:intron 15.0%
!! AAAACGTAAAATAAACATAA+GGG + chr4_4:56446079-56446098 None:intergenic 15.0%
!! TAAAACGTAAAATAAACATA+AGG + chr4_4:56446080-56446099 None:intergenic 15.0%
!!! ACTTGAACATTTTAAATATA+GGG + chr4_4:56446111-56446130 None:intergenic 15.0%
!!! AACTTGAACATTTTAAATAT+AGG + chr4_4:56446112-56446131 None:intergenic 15.0%
!!! TATATTTAAAATGTTCAAGT+TGG - chr4_4:56446111-56446130 Msa0689400:CDS 15.0%
!!! TGGTTAAAATGTATATTTTT+TGG - chr4_4:56446432-56446451 Msa0689400:intron 15.0%
!! CTTGATATATAACATATTTA+TGG - chr4_4:56448144-56448163 Msa0689400:intron 15.0%
!! CAATATTTAGATAAAAATAC+CGG + chr4_4:56448607-56448626 None:intergenic 15.0%
!! ATAAGAATAAACTACTAAAG+GGG + chr4_4:56445586-56445605 None:intergenic 20.0%
!! GAATAAGAATAAACTACTAA+AGG + chr4_4:56445588-56445607 None:intergenic 20.0%
!! ACACCATTAATCAATTATAA+CGG + chr4_4:56445734-56445753 None:intergenic 20.0%
!! ATTAAACCTTATTCATTGTA+TGG - chr4_4:56445784-56445803 Msa0689400:intron 20.0%
!! ATTTAACCATACAATGAATA+AGG + chr4_4:56445793-56445812 None:intergenic 20.0%
!! ACAAAATTCGAGATAATTAA+AGG + chr4_4:56445828-56445847 None:intergenic 20.0%
!! CAAAATTACATGCTTTAATA+GGG + chr4_4:56445908-56445927 None:intergenic 20.0%
!! ACAAAATTACATGCTTTAAT+AGG + chr4_4:56445909-56445928 None:intergenic 20.0%
!! TAATTTGAAAGACTGATAAA+TGG - chr4_4:56445928-56445947 Msa0689400:intron 20.0%
!! AATTTGAAAGACTGATAAAT+GGG - chr4_4:56445929-56445948 Msa0689400:intron 20.0%
!!! AAGAAAATGTAACTTTTCTA+GGG - chr4_4:56445968-56445987 Msa0689400:intron 20.0%
!!! GTTTATTTTACGTTTTAAGT+CGG - chr4_4:56446083-56446102 Msa0689400:CDS 20.0%
!!! CTTGAACATTTTAAATATAG+GGG + chr4_4:56446110-56446129 None:intergenic 20.0%
!!! TTAGAACCTTTTTAAACATA+GGG - chr4_4:56446333-56446352 Msa0689400:intron 20.0%
!!! CCTTTTATATAATATAGTGA+AGG + chr4_4:56446409-56446428 None:intergenic 20.0%
!! CCTTCACTATATTATATAAA+AGG - chr4_4:56446406-56446425 Msa0689400:intron 20.0%
!! CTATATTATATAAAAGGTTG+TGG - chr4_4:56446412-56446431 Msa0689400:intron 20.0%
!! GTTATCAAACTATATATATG+TGG + chr4_4:56446481-56446500 None:intergenic 20.0%
!!! ATCTCAATTTCATTGATAAT+TGG - chr4_4:56446778-56446797 Msa0689400:intron 20.0%
!!! ACTTTGATTATAAGATGTTT+TGG + chr4_4:56446962-56446981 None:intergenic 20.0%
!! TGCTGAATATTTAAATTTGT+GGG + chr4_4:56447841-56447860 None:intergenic 20.0%
!! AATTTAAATATTCAGCACAT+TGG - chr4_4:56447844-56447863 Msa0689400:intron 20.0%
!!! TTTTCTACTTTTTCTTATAG+TGG - chr4_4:56448629-56448648 Msa0689400:CDS 20.0%
!!! CTGTTTTTTTGTCAAATTTC+AGG - chr4_4:56445465-56445484 Msa0689400:CDS 25.0%
!! TTTTGTCAAATTTCAGGATA+TGG - chr4_4:56445471-56445490 Msa0689400:CDS 25.0%
! TTTGTCAAATTTCAGGATAT+GGG - chr4_4:56445472-56445491 Msa0689400:CDS 25.0%
! GAATTGGTATATGTAAAGAA+AGG + chr4_4:56445554-56445573 None:intergenic 25.0%
!!! ACAGTTTAATTTTGATACAC+TGG - chr4_4:56445611-56445630 Msa0689400:intron 25.0%
!! TCTAAAGTCAAACATTAGAT+TGG + chr4_4:56445673-56445692 None:intergenic 25.0%
!! CAAGAAAATGTAACTTTTCT+AGG - chr4_4:56445967-56445986 Msa0689400:intron 25.0%
!!! AATGATATTTTTATAGGAGC+TGG - chr4_4:56446014-56446033 Msa0689400:intron 25.0%
! AGAGTTAACTCAAAATTTGA+CGG + chr4_4:56446175-56446194 None:intergenic 25.0%
!! GTTAGAACCTTTTTAAACAT+AGG - chr4_4:56446332-56446351 Msa0689400:intron 25.0%
!! TAGAACCTTTTTAAACATAG+GGG - chr4_4:56446334-56446353 Msa0689400:intron 25.0%
! TGATTAGATACTAGTGTAAA+AGG + chr4_4:56446516-56446535 None:intergenic 25.0%
!!! CATTTTTTCACACCAATTTT+AGG - chr4_4:56446544-56446563 Msa0689400:intron 25.0%
! CAATATACCATTCCTAAAAT+TGG + chr4_4:56446559-56446578 None:intergenic 25.0%
! TTAGGAATGGTATATTGATA+AGG - chr4_4:56446562-56446581 Msa0689400:intron 25.0%
! ATAAACAAACCAGACATAAT+AGG - chr4_4:56446593-56446612 Msa0689400:intron 25.0%
! TTGGTTCAATAAAACAGAAA+GGG + chr4_4:56446943-56446962 None:intergenic 25.0%
!! TTTGGTTCAATAAAACAGAA+AGG + chr4_4:56446944-56446963 None:intergenic 25.0%
!! TGTTGTTTGAAAATAATGAC+AGG - chr4_4:56447284-56447303 Msa0689400:intron 25.0%
! ACCTAAAGTGAGAAATTATT+TGG - chr4_4:56447343-56447362 Msa0689400:intron 25.0%
! CCTAAAGTGAGAAATTATTT+GGG - chr4_4:56447344-56447363 Msa0689400:intron 25.0%
!! ATTATTTGGGATTGGAAATA+CGG - chr4_4:56447357-56447376 Msa0689400:intron 25.0%
! GAAATCAAAATTTACTGGAA+GGG + chr4_4:56447413-56447432 None:intergenic 25.0%
! AGAAATCAAAATTTACTGGA+AGG + chr4_4:56447414-56447433 None:intergenic 25.0%
! GATGAGAAATCAAAATTTAC+TGG + chr4_4:56447418-56447437 None:intergenic 25.0%
!! TGGCATCTAAATAAAGTTTT+CGG + chr4_4:56447576-56447595 None:intergenic 25.0%
! TATGTGTGTGTAATTTACTT+TGG + chr4_4:56447596-56447615 None:intergenic 25.0%
! AAAATTGAAACTAACTGCAA+GGG + chr4_4:56447727-56447746 None:intergenic 25.0%
!! AAAGCACTAAAAAGAGAAAT+TGG - chr4_4:56447761-56447780 Msa0689400:intron 25.0%
! AAGCACTAAAAAGAGAAATT+GGG - chr4_4:56447762-56447781 Msa0689400:intron 25.0%
! GTGCTGAATATTTAAATTTG+TGG + chr4_4:56447842-56447861 None:intergenic 25.0%
! AACTATAAATAAAACACCCT+TGG + chr4_4:56447985-56448004 None:intergenic 25.0%
!!! GATGTTTTTTCTTGAAATGA+GGG + chr4_4:56448040-56448059 None:intergenic 25.0%
!!! TGATGTTTTTTCTTGAAATG+AGG + chr4_4:56448041-56448060 None:intergenic 25.0%
! ATTGTAGATAATTTATCTCC+TGG - chr4_4:56448098-56448117 Msa0689400:intron 25.0%
! TTGTAGATAATTTATCTCCT+GGG - chr4_4:56448099-56448118 Msa0689400:intron 25.0%
! ATTTAGATAAAAATACCGGT+AGG + chr4_4:56448603-56448622 None:intergenic 25.0%
! TTTCAGTTTAAAGTGGGAAT+TGG + chr4_4:56445432-56445451 None:intergenic 30.0%
ACAGAGAAAGAAGAACTTAA+GGG + chr4_4:56445526-56445545 None:intergenic 30.0%
TACAGAGAAAGAAGAACTTA+AGG + chr4_4:56445527-56445546 None:intergenic 30.0%
AAAGGGGAAAACAATTGAAT+TGG + chr4_4:56445570-56445589 None:intergenic 30.0%
CCATTAATCAATTATAACGG+TGG + chr4_4:56445731-56445750 None:intergenic 30.0%
CCACCGTTATAATTGATTAA+TGG - chr4_4:56445728-56445747 Msa0689400:CDS 30.0%
GTAAAAAATCTTTACACCGA+CGG - chr4_4:56445752-56445771 Msa0689400:CDS 30.0%
! TGAAGAAATTTTGCTGACAT+TGG + chr4_4:56446149-56446168 None:intergenic 30.0%
! AGAACCTTTTTAAACATAGG+GGG - chr4_4:56446335-56446354 Msa0689400:intron 30.0%
TGAAACCTAAAATAGAGGTA+AGG - chr4_4:56446364-56446383 Msa0689400:intron 30.0%
GAAACCTAAAATAGAGGTAA+GGG - chr4_4:56446365-56446384 Msa0689400:intron 30.0%
TGAAGGCTAAATTGTATGTT+TGG + chr4_4:56446392-56446411 None:intergenic 30.0%
!! TTTCACACCAATTTTAGGAA+TGG - chr4_4:56446549-56446568 Msa0689400:intron 30.0%
!! TTATGTCTGGTTTGTTTATC+CGG + chr4_4:56446592-56446611 None:intergenic 30.0%
AAAGAAATGCCTATTATGTC+TGG + chr4_4:56446605-56446624 None:intergenic 30.0%
TAATCATTAGACGAAAGCAA+GGG + chr4_4:56446666-56446685 None:intergenic 30.0%
ATAATCATTAGACGAAAGCA+AGG + chr4_4:56446667-56446686 None:intergenic 30.0%
ATGCATTTGTTCTTGATTGT+TGG - chr4_4:56446818-56446837 Msa0689400:intron 30.0%
TTAGCCTACATGTTATTGAT+TGG - chr4_4:56446843-56446862 Msa0689400:intron 30.0%
AATGCCAATCAATAACATGT+AGG + chr4_4:56446850-56446869 None:intergenic 30.0%
! TACATGTTATTGATTGGCAT+TGG - chr4_4:56446849-56446868 Msa0689400:intron 30.0%
ATTATCAACTTCCACATAGA+TGG + chr4_4:56446889-56446908 None:intergenic 30.0%
TATAACAATGTCGACAATTG+TGG + chr4_4:56447197-56447216 None:intergenic 30.0%
CCCAAATAATTTCTCACTTT+AGG + chr4_4:56447347-56447366 None:intergenic 30.0%
! AGTGAGAAATTATTTGGGAT+TGG - chr4_4:56447349-56447368 Msa0689400:intron 30.0%
! TTTGATTTCTCATCCAGTTA+TGG - chr4_4:56447424-56447443 Msa0689400:intron 30.0%
CAAAATTGAAACTAACTGCA+AGG + chr4_4:56447728-56447747 None:intergenic 30.0%
!! CTTGCAGTTAGTTTCAATTT+TGG - chr4_4:56447726-56447745 Msa0689400:intron 30.0%
TTAAATATTCAGCACATTGG+TGG - chr4_4:56447847-56447866 Msa0689400:intron 30.0%
! AAAAGCAAAGCAGATTTTGA+CGG - chr4_4:56447896-56447915 Msa0689400:intron 30.0%
TGTAGATAATTTATCTCCTG+GGG - chr4_4:56448100-56448119 Msa0689400:intron 30.0%
GGCATGAAATATCACTAAAA+GGG + chr4_4:56448180-56448199 None:intergenic 30.0%
AGGCATGAAATATCACTAAA+AGG + chr4_4:56448181-56448200 None:intergenic 30.0%
!! TCAATCACATCTGTTTCTTT+TGG + chr4_4:56448462-56448481 None:intergenic 30.0%
ACACTATAAAATGTCTGCAA+TGG + chr4_4:56448511-56448530 None:intergenic 30.0%
! AGAAAAGTATGCATTCTCTT+AGG - chr4_4:56448574-56448593 Msa0689400:CDS 30.0%
CGTCACAAGAAGTTAGTATA+TGG - chr4_4:56445177-56445196 Msa0689400:three_prime_UTR 35.0%
GTTGTGACTTATGTTGTTGT+TGG + chr4_4:56445332-56445351 None:intergenic 35.0%
ACTCAATCTCTCTAACAACT+TGG - chr4_4:56445389-56445408 Msa0689400:CDS 35.0%
GTTTAATTCATATACGCCGT+CGG + chr4_4:56445771-56445790 None:intergenic 35.0%
TGGCTTGAAACCTAAAATAG+AGG - chr4_4:56446359-56446378 Msa0689400:intron 35.0%
GGTATATTGATAAGGAGAAC+CGG - chr4_4:56446570-56446589 Msa0689400:intron 35.0%
CATAAACAATGAAAGGCAGA+AGG + chr4_4:56446636-56446655 None:intergenic 35.0%
TCTGCCTTTCATTGTTTATG+AGG - chr4_4:56446636-56446655 Msa0689400:intron 35.0%
CTGCCTTTCATTGTTTATGA+GGG - chr4_4:56446637-56446656 Msa0689400:intron 35.0%
TGCCTTTCATTGTTTATGAG+GGG - chr4_4:56446638-56446657 Msa0689400:intron 35.0%
!! TTATTGATTGGCATTGGCAT+TGG - chr4_4:56446855-56446874 Msa0689400:intron 35.0%
! AACTCTTTTACCCTAACATC+AGG - chr4_4:56446999-56447018 Msa0689400:intron 35.0%
TTTACCACATCCTGATGTTA+GGG + chr4_4:56447012-56447031 None:intergenic 35.0%
ATTTACCACATCCTGATGTT+AGG + chr4_4:56447013-56447032 None:intergenic 35.0%
! CGTAGTGGAATTTGAATCAA+TGG - chr4_4:56447064-56447083 Msa0689400:CDS 35.0%
!! TACAAAGCGTTGTCAAATAG+AGG - chr4_4:56447109-56447128 Msa0689400:intron 35.0%
! TTGTGGATTGAGGAAAATAG+CGG + chr4_4:56447180-56447199 None:intergenic 35.0%
TTGAAAATAATGACAGGCAG+TGG - chr4_4:56447290-56447309 Msa0689400:intron 35.0%
TAAGCTGAATGTACCATAAC+TGG + chr4_4:56447440-56447459 None:intergenic 35.0%
TGAGTTATGGGTAAAAGATC+TGG - chr4_4:56447526-56447545 Msa0689400:intron 35.0%
! ACCTATTTCTTTCAAGCAGT+TGG - chr4_4:56447684-56447703 Msa0689400:intron 35.0%
ACCAACTGCTTGAAAGAAAT+AGG + chr4_4:56447688-56447707 None:intergenic 35.0%
! GGCTACATTGTTGTTACTTA+AGG - chr4_4:56447951-56447970 Msa0689400:intron 35.0%
TACTTAAGGTTTGACATCCA+AGG - chr4_4:56447965-56447984 Msa0689400:intron 35.0%
ACTTAAGGTTTGACATCCAA+GGG - chr4_4:56447966-56447985 Msa0689400:intron 35.0%
TAGTTAATGATTTCCCTCAC+CGG - chr4_4:56448000-56448019 Msa0689400:intron 35.0%
! TTTTTCTTGAAATGAGGGTC+TGG + chr4_4:56448035-56448054 None:intergenic 35.0%
GTAGATAATTTATCTCCTGG+GGG - chr4_4:56448101-56448120 Msa0689400:intron 35.0%
AATCTCTTAAGTATTCTCGC+AGG + chr4_4:56448201-56448220 None:intergenic 35.0%
TGAAAAAGACAACCACAAGA+GGG + chr4_4:56448230-56448249 None:intergenic 35.0%
CACTGTCACACAATATAGAA+GGG + chr4_4:56448348-56448367 None:intergenic 35.0%
TCACTGTCACACAATATAGA+AGG + chr4_4:56448349-56448368 None:intergenic 35.0%
TCTATATTGTGTGACAGTGA+AGG - chr4_4:56448349-56448368 Msa0689400:intron 35.0%
ATGGTTATTAAGCAACCCTA+TGG - chr4_4:56448372-56448391 Msa0689400:intron 35.0%
TGGTTATTAAGCAACCCTAT+GGG - chr4_4:56448373-56448392 Msa0689400:intron 35.0%
ATAAAATGTCTGCAATGGAC+AGG + chr4_4:56448506-56448525 None:intergenic 35.0%
ATATGTTCAACATCAACCAC+AGG - chr4_4:56448551-56448570 Msa0689400:CDS 35.0%
TTGAAGAGAAAGAGGGGAAA+TGG - chr4_4:56445113-56445132 Msa0689400:three_prime_UTR 40.0%
TGAAGAGAAAGAGGGGAAAT+GGG - chr4_4:56445114-56445133 Msa0689400:three_prime_UTR 40.0%
GAAGAAGAAGAAGAAGAGAG+AGG + chr4_4:56445258-56445277 None:intergenic 40.0%
TACTTGGGAAATAGAGGAAG+AGG + chr4_4:56445295-56445314 None:intergenic 40.0%
! AGCTGTTACTTGGGAAATAG+AGG + chr4_4:56445301-56445320 None:intergenic 40.0%
! GTCTTGTTCAGCTGTTACTT+GGG + chr4_4:56445310-56445329 None:intergenic 40.0%
! TGCTGACATTGGTTACGTAA+GGG + chr4_4:56446138-56446157 None:intergenic 40.0%
! TTGCTGACATTGGTTACGTA+AGG + chr4_4:56446139-56446158 None:intergenic 40.0%
! TGGTCCCTTACCTCTATTTT+AGG + chr4_4:56446372-56446391 None:intergenic 40.0%
GCCTTTCATTGTTTATGAGG+GGG - chr4_4:56446639-56446658 Msa0689400:intron 40.0%
ACCCCCTCATAAACAATGAA+AGG + chr4_4:56446643-56446662 None:intergenic 40.0%
TTTACCCTAACATCAGGATG+TGG - chr4_4:56447005-56447024 Msa0689400:intron 40.0%
TCAGGATGTGGTAAATGAGT+AGG - chr4_4:56447017-56447036 Msa0689400:intron 40.0%
AAATAGCAGCTATAGCGTAG+TGG - chr4_4:56447049-56447068 Msa0689400:CDS 40.0%
!! AAAGCGTTGTCAAATAGAGG+CGG - chr4_4:56447112-56447131 Msa0689400:intron 40.0%
! ATGTCGACAATTGTGGATTG+AGG + chr4_4:56447190-56447209 None:intergenic 40.0%
!! GAGTAAGTGTGCTGTTTATC+AGG + chr4_4:56447251-56447270 None:intergenic 40.0%
AAATAATGACAGGCAGTGGT+AGG - chr4_4:56447294-56447313 Msa0689400:intron 40.0%
ACTTTGATTCCATGTGCAGA+TGG - chr4_4:56447493-56447512 Msa0689400:intron 40.0%
!! CAGTTGGTAGAATCATATCC+TGG - chr4_4:56447700-56447719 Msa0689400:intron 40.0%
! TCACTGTCCTAATGGTTTGT+TGG - chr4_4:56447787-56447806 Msa0689400:intron 40.0%
AATCCAGCCAACAAACCATT+AGG + chr4_4:56447797-56447816 None:intergenic 40.0%
!! AATGGTTTGTTGGCTGGATT+TGG - chr4_4:56447797-56447816 Msa0689400:intron 40.0%
ATTTGTGGGATTGTGACTAC+AGG + chr4_4:56447827-56447846 None:intergenic 40.0%
! AAGAGTTTTGCAGAAGCCTT+TGG - chr4_4:56448067-56448086 Msa0689400:intron 40.0%
TCTACAATAGCACCAACCAA+AGG + chr4_4:56448086-56448105 None:intergenic 40.0%
! GAGATTCATTTTCCCTCTTG+TGG - chr4_4:56448215-56448234 Msa0689400:intron 40.0%
GTGAAAAAGACAACCACAAG+AGG + chr4_4:56448231-56448250 None:intergenic 40.0%
!! CTTGTGGTTGTCTTTTTCAC+AGG - chr4_4:56448231-56448250 Msa0689400:intron 40.0%
GGTATTTGTACAGTCTGATG+TGG - chr4_4:56448252-56448271 Msa0689400:intron 40.0%
GTGCATCAACTTCATCAAAC+TGG + chr4_4:56448303-56448322 None:intergenic 40.0%
TATTGTGTGACAGTGAAGGA+TGG - chr4_4:56448353-56448372 Msa0689400:intron 40.0%
GGTTATTAAGCAACCCTATG+GGG - chr4_4:56448374-56448393 Msa0689400:intron 40.0%
TTCTGCATGAATCTCTCTCT+CGG + chr4_4:56448407-56448426 None:intergenic 40.0%
GAGATTCATGCAGAATTCGA+AGG - chr4_4:56448412-56448431 Msa0689400:intron 40.0%
ATTCATGCAGAATTCGAAGG+AGG - chr4_4:56448415-56448434 Msa0689400:CDS 40.0%
TTCATGCAGAATTCGAAGGA+GGG - chr4_4:56448416-56448435 Msa0689400:CDS 40.0%
AAGGAGGGAAAATCTATCGA+AGG - chr4_4:56448431-56448450 Msa0689400:CDS 40.0%
! GAATGCATACTTTTCTCCTG+TGG + chr4_4:56448570-56448589 None:intergenic 40.0%
!! GAAATGGGTTATTGCTGTGG+AGG - chr4_4:56445129-56445148 Msa0689400:three_prime_UTR 45.0%
GGTGAAAATGAGAGTGAGAG+TGG + chr4_4:56445228-56445247 None:intergenic 45.0%
GAAGAAGAGAGAGGACGAAA+GGG + chr4_4:56445249-56445268 None:intergenic 45.0%
AGAAGAAGAGAGAGGACGAA+AGG + chr4_4:56445250-56445269 None:intergenic 45.0%
GAAATAGAGGAAGAGGAGAG+TGG + chr4_4:56445288-56445307 None:intergenic 45.0%
!! GGTCTTGTTCAGCTGTTACT+TGG + chr4_4:56445311-56445330 None:intergenic 45.0%
ACGCACATGGATGACTTATG+GGG + chr4_4:56446220-56446239 None:intergenic 45.0%
GACGCACATGGATGACTTAT+GGG + chr4_4:56446221-56446240 None:intergenic 45.0%
AGACGCACATGGATGACTTA+TGG + chr4_4:56446222-56446241 None:intergenic 45.0%
GTGTTTAACAGAGACGCACA+TGG + chr4_4:56446233-56446252 None:intergenic 45.0%
CCAGCCCCCTATGTTTAAAA+AGG + chr4_4:56446342-56446361 None:intergenic 45.0%
! CCTTTTTAAACATAGGGGGC+TGG - chr4_4:56446339-56446358 Msa0689400:intron 45.0%
CATCCAATATCCACCATGAG+TGG + chr4_4:56446753-56446772 None:intergenic 45.0%
!! CTCATGGTGGATATTGGATG+TGG - chr4_4:56446753-56446772 Msa0689400:intron 45.0%
! TGGCTTGGATACCATCTATG+TGG - chr4_4:56446875-56446894 Msa0689400:intron 45.0%
GCAGTGGTAGGTTTCTTATG+TGG - chr4_4:56447306-56447325 Msa0689400:intron 45.0%
TGGGATTGGAAATACGGCAA+AGG - chr4_4:56447363-56447382 Msa0689400:intron 45.0%
GGGATTGGAAATACGGCAAA+GGG - chr4_4:56447364-56447383 Msa0689400:intron 45.0%
TGGAAATACGGCAAAGGGTA+AGG - chr4_4:56447369-56447388 Msa0689400:intron 45.0%
! ATGGGTAAAAGATCTGGCTC+TGG - chr4_4:56447532-56447551 Msa0689400:intron 45.0%
!! ATTGGGTGTCACTGTCCTAA+TGG - chr4_4:56447779-56447798 Msa0689400:intron 45.0%
!! TGTCCTAATGGTTTGTTGGC+TGG - chr4_4:56447791-56447810 Msa0689400:intron 45.0%
! GTTTTGCAGAAGCCTTTGGT+TGG - chr4_4:56448071-56448090 Msa0689400:intron 45.0%
TAATTTATCTCCTGGGGGAC+AGG - chr4_4:56448106-56448125 Msa0689400:intron 45.0%
AGAAAATATACCTGTCCCCC+AGG + chr4_4:56448119-56448138 None:intergenic 45.0%
ACAGTCTGATGTGGTTGAAG+TGG - chr4_4:56448261-56448280 Msa0689400:intron 45.0%
TAAGCAACCCTATGGGGATT+AGG - chr4_4:56448380-56448399 Msa0689400:intron 45.0%
CATTCTCTTAGGATGCCTAC+CGG - chr4_4:56448585-56448604 Msa0689400:CDS 45.0%
!! ATTTATTTATTTGTAATTTA+AGG - chr4_4:56448670-56448689 Msa0689400:CDS 5.0%
!! GGGGAAATGGGTTATTGCTG+TGG - chr4_4:56445126-56445145 Msa0689400:three_prime_UTR 50.0%
TGGGTTATTGCTGTGGAGGT+TGG - chr4_4:56445133-56445152 Msa0689400:three_prime_UTR 50.0%
! CTCTGTCTAGAATGTCCACG+TGG - chr4_4:56446191-56446210 Msa0689400:intron 50.0%
CGCACATGGATGACTTATGG+GGG + chr4_4:56446219-56446238 None:intergenic 50.0%
GTGCGTCTCTGTTAAACACG+TGG - chr4_4:56446234-56446253 Msa0689400:intron 50.0%
!! CTGCCACTCATGGTGGATAT+TGG - chr4_4:56446747-56446766 Msa0689400:intron 50.0%
!! GATTGGCATTGGCATTGGCT+TGG - chr4_4:56446860-56446879 Msa0689400:intron 50.0%
TGGTGAAGCGTGCTGAGTTA+TGG - chr4_4:56447513-56447532 Msa0689400:intron 50.0%
GGTGAAGCGTGCTGAGTTAT+GGG - chr4_4:56447514-56447533 Msa0689400:intron 50.0%
GAAACTAACTGCAAGGGTCC+AGG + chr4_4:56447721-56447740 None:intergenic 50.0%
GACTGCAGGCGATCACTTAT+TGG - chr4_4:56447930-56447949 Msa0689400:intron 50.0%
TCTCGGTCCTAATCCCCATA+GGG + chr4_4:56448390-56448409 None:intergenic 50.0%
!! TTCCAGTCTGGTACTGGTGC+AGG + chr4_4:56446705-56446724 None:intergenic 55.0%
ACCAGTACCAGACTGGAACC+AGG - chr4_4:56446707-56446726 Msa0689400:intron 55.0%
ACCTGGTTCCAGTCTGGTAC+TGG + chr4_4:56446711-56446730 None:intergenic 55.0%
GCAAACACCTGGTTCCAGTC+TGG + chr4_4:56446717-56446736 None:intergenic 55.0%
CACGCTTCACCATCTGCACA+TGG + chr4_4:56447505-56447524 None:intergenic 55.0%
CTCTCGGTCCTAATCCCCAT+AGG + chr4_4:56448391-56448410 None:intergenic 55.0%
!! TGACTTATGGGGGTGCCACG+TGG + chr4_4:56446209-56446228 None:intergenic 60.0%
CTCCTGCACCAGTACCAGAC+TGG - chr4_4:56446700-56446719 Msa0689400:intron 60.0%
GAGCAGGGTCTGCAAACACC+TGG + chr4_4:56446728-56446747 None:intergenic 60.0%
AGACCCTGCTCTGCCACTCA+TGG - chr4_4:56446737-56446756 Msa0689400:intron 60.0%
CCACCATGAGTGGCAGAGCA+GGG + chr4_4:56446743-56446762 None:intergenic 60.0%
TCCACCATGAGTGGCAGAGC+AGG + chr4_4:56446744-56446763 None:intergenic 60.0%
CTGGACACTGCATCCGGTGA+GGG + chr4_4:56448016-56448035 None:intergenic 60.0%
TCTGGACACTGCATCCGGTG+AGG + chr4_4:56448017-56448036 None:intergenic 60.0%
GAGGGTCTGGACACTGCATC+CGG + chr4_4:56448022-56448041 None:intergenic 60.0%
CCCTGCTCTGCCACTCATGG+TGG - chr4_4:56446740-56446759 Msa0689400:intron 65.0%
CGGCGTGAGACTGTGACTGC+AGG - chr4_4:56447916-56447935 Msa0689400:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 56445112 56448711 56445112 ID=Msa0689400;Name=Msa0689400
chr4_4 mRNA 56445112 56448711 56445112 ID=Msa0689400-mRNA-1;Parent=Msa0689400;Name=Msa0689400-mRNA-1;_AED=0.40;_eAED=0.40;_QI=20|1|1|1|1|1|8|234|316
chr4_4 exon 56445112 56445570 56445112 ID=Msa0689400-mRNA-1:exon:14925;Parent=Msa0689400-mRNA-1
chr4_4 exon 56445696 56445794 56445696 ID=Msa0689400-mRNA-1:exon:14924;Parent=Msa0689400-mRNA-1
chr4_4 exon 56446076 56446160 56446076 ID=Msa0689400-mRNA-1:exon:14923;Parent=Msa0689400-mRNA-1
chr4_4 exon 56446262 56446311 56446262 ID=Msa0689400-mRNA-1:exon:14922;Parent=Msa0689400-mRNA-1
chr4_4 exon 56446438 56446517 56446438 ID=Msa0689400-mRNA-1:exon:14921;Parent=Msa0689400-mRNA-1
chr4_4 exon 56447049 56447124 56447049 ID=Msa0689400-mRNA-1:exon:14920;Parent=Msa0689400-mRNA-1
chr4_4 exon 56448280 56448336 56448280 ID=Msa0689400-mRNA-1:exon:14919;Parent=Msa0689400-mRNA-1
chr4_4 exon 56448413 56448711 56448413 ID=Msa0689400-mRNA-1:exon:14918;Parent=Msa0689400-mRNA-1
chr4_4 five_prime_UTR 56448692 56448711 56448692 ID=Msa0689400-mRNA-1:five_prime_utr;Parent=Msa0689400-mRNA-1
chr4_4 CDS 56448413 56448691 56448413 ID=Msa0689400-mRNA-1:cds;Parent=Msa0689400-mRNA-1
chr4_4 CDS 56448280 56448336 56448280 ID=Msa0689400-mRNA-1:cds;Parent=Msa0689400-mRNA-1
chr4_4 CDS 56447049 56447124 56447049 ID=Msa0689400-mRNA-1:cds;Parent=Msa0689400-mRNA-1
chr4_4 CDS 56446438 56446517 56446438 ID=Msa0689400-mRNA-1:cds;Parent=Msa0689400-mRNA-1
chr4_4 CDS 56446262 56446311 56446262 ID=Msa0689400-mRNA-1:cds;Parent=Msa0689400-mRNA-1
chr4_4 CDS 56446076 56446160 56446076 ID=Msa0689400-mRNA-1:cds;Parent=Msa0689400-mRNA-1
chr4_4 CDS 56445696 56445794 56445696 ID=Msa0689400-mRNA-1:cds;Parent=Msa0689400-mRNA-1
chr4_4 CDS 56445346 56445570 56445346 ID=Msa0689400-mRNA-1:cds;Parent=Msa0689400-mRNA-1
chr4_4 three_prime_UTR 56445112 56445345 56445112 ID=Msa0689400-mRNA-1:three_prime_utr;Parent=Msa0689400-mRNA-1
Gene Sequence

>Msa0689400

ATGGGTTATTGCTGTGGAGGTTGGCGTATATTACAGATACAGAGTCGTCACAAGAAGTTAGTATATGGCATTGATACTGCTTTAGTAATGTTACCACTCTCACTCTCATTTTCACCCTTTCGTCCTCTCTCTTCTTCTTCTTCTTCTTCTCTTCCACTCTCCTCTTCCTCTATTTCCCAAGTAACAGCTGAACAAGACCAACAACAACATAAGTCACAACGAAAAAGCTCACAACTTGTCGCATTAGAATATGCTGAACTCAATCTCTCTAACAACTTGGATATGGGTCATGTCAGAATCAGACAACATGTCAATCCCTTAAGTTCTTCTTTCTCTACTCCTGCACCAGTACCAGACTGGAACCAGGTGTTTGCAGACCCTGCTCTGCCACTCATGGTGGATATTGGATGTGGCAGTGGTAGGTTTCTTATGTGGCTTGCAAAAAGAACACCTAAAGTGAGAAATTATTTGGGATTGGAAATACGGCAAAGGATGGTGAAGCGTGCTGAGTTATGGGTAAAAGATCTGGCTCTGGATAACATACATTTCTTGTTTGCAAATGCACCTATTTCTTTCAAGCAGTTGGTAGAATCATATCCTGGACCCTTGCAGTTAGTTTCAATTTTGTGTCCAGACCCTCATTTCAAGAAAAAACATCATAAAAGAAGAGTTTTGCAGAAGCCTTTGGTTGGTGCTATTGTAGATAATTTATCTCCTGGGGGACAGGTATTTGTACAGTCTGATGTGGTTGAAGTGGCACTTGACATGAAAAACCAGTTTGATGAAGTTGATGCACTTAGTCACACAGATGCTTTGAACCCTTCTATATTGTGTGACAGTGAAGGATGGTTATTAAGCAACCCTATGGGGATTAGGACCGAGAGAGAGATTCATGCAGAATTCGAAGGAGGGAAAATCTATCGAAGGTTGTACCAAAAGAAACAGATGTGA

Protein sequence

>Msa0689400

MGYCCGGWRILQIQSRHKKLVYGIDTALVMLPLSLSFSPFRPLSSSSSSSLPLSSSSISQVTAEQDQQQHKSQRKSSQLVALEYAELNLSNNLDMGHVRIRQHVNPLSSSFSTPAPVPDWNQVFADPALPLMVDIGCGSGRFLMWLAKRTPKVRNYLGLEIRQRMVKRAELWVKDLALDNIHFLFANAPISFKQLVESYPGPLQLVSILCPDPHFKKKHHKRRVLQKPLVGAIVDNLSPGGQVFVQSDVVEVALDMKNQFDEVDALSHTDALNPSILCDSEGWLLSNPMGIRTEREIHAEFEGGKIYRRLYQKKQM*