AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211040 MtrunA17_Chr8g0337231 90.794 315 28 1 1 314 1 315 0.0 574
Msa1211040 MtrunA17_Chr8g0337241 83.333 282 44 2 35 316 2 280 2.44e-165 461
Msa1211040 MtrunA17_Chr6g0457691 42.347 196 104 4 119 313 538 725 3.84e-42 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211040 AT5G17660.1 65.306 245 77 3 75 316 69 308 3.47e-120 348
Msa1211040 AT5G24840.1 28.512 242 128 11 99 313 23 246 5.95e-12 65.1

Find 85 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTGTAATTTA+AGG 0.065136 8_1:-70404034 Msa1211040:three_prime_UTR
ACCTAAAGTGAGAAATTATT+TGG 0.126545 8_1:-70405361 Msa1211040:CDS
CTTGCAGTTAGTTTCAATTT+TGG 0.187587 8_1:-70404978 Msa1211040:intron
CCCAAATAATTTCTCACTTT+AGG 0.263184 8_1:+70405360 None:intergenic
TCAATCACATCTGTTTCTTT+TGG 0.300643 8_1:+70404245 None:intergenic
GGTCTTGTTCAGCTGTTACT+TGG 0.321900 8_1:+70407396 None:intergenic
TAAGCAACCCTATGGGGATT+AGG 0.326313 8_1:-70404324 Msa1211040:CDS
ATTATTTGGGATTGGAAATA+CGG 0.335361 8_1:-70405347 Msa1211040:CDS
CTGCCACTCATGGTGGATAT+TGG 0.351376 8_1:-70405957 Msa1211040:CDS
TTGAAGAGAAAGAGGGGAAA+TGG 0.356944 8_1:-70407591 Msa1211040:exon
TCACTGTCACACAATATAGA+AGG 0.376117 8_1:+70404358 None:intergenic
ACCAACTGCTTGAAAGAAAT+AGG 0.378434 8_1:+70405019 None:intergenic
CGTCACAAGAAGTTAGTATA+TGG 0.384046 8_1:-70407527 Msa1211040:CDS
AGAAAAGTATGCATTCTCTT+AGG 0.387543 8_1:-70404130 Msa1211040:three_prime_UTR
TTTGTCAAATTTCAGGATAT+GGG 0.389407 8_1:-70407232 Msa1211040:intron
TACAGAGAAAGAAGAACTTA+AGG 0.390216 8_1:+70407180 None:intergenic
AGTGAGAAATTATTTGGGAT+TGG 0.396847 8_1:-70405355 Msa1211040:CDS
GTTGTGACTTATGTTGTTGT+TGG 0.400793 8_1:+70407375 None:intergenic
CCTAAAGTGAGAAATTATTT+GGG 0.400944 8_1:-70405360 Msa1211040:CDS
GAAGAAGAGAGAGGACGAAA+GGG 0.402215 8_1:+70407458 None:intergenic
GTGCATCAACTTCATCAAAC+TGG 0.411217 8_1:+70404404 None:intergenic
GTCTTGTTCAGCTGTTACTT+GGG 0.430566 8_1:+70407397 None:intergenic
TGAAGAGAAAGAGGGGAAAT+GGG 0.430964 8_1:-70407590 Msa1211040:exon
TGGTGAAGCGTGCTGAGTTA+TGG 0.441715 8_1:-70405191 Msa1211040:CDS
ATTGTAGATAATTTATCTCC+TGG 0.443117 8_1:-70404606 Msa1211040:CDS
ACCTATTTCTTTCAAGCAGT+TGG 0.457053 8_1:-70405020 Msa1211040:CDS
GGTGAAGCGTGCTGAGTTAT+GGG 0.461581 8_1:-70405190 Msa1211040:CDS
TCCACCATGAGTGGCAGAGC+AGG 0.463070 8_1:+70405963 None:intergenic
AGCTGTTACTTGGGAAATAG+AGG 0.464400 8_1:+70407406 None:intergenic
AGAAGAAGAGAGAGGACGAA+AGG 0.467431 8_1:+70407457 None:intergenic
TTGTAGATAATTTATCTCCT+GGG 0.470027 8_1:-70404605 Msa1211040:CDS
TTCCAGTCTGGTACTGGTGC+AGG 0.472779 8_1:+70406002 None:intergenic
ACAGAGAAAGAAGAACTTAA+GGG 0.478265 8_1:+70407181 None:intergenic
GGGATTGGAAATACGGCAAA+GGG 0.483148 8_1:-70405340 Msa1211040:intron
AGACCCTGCTCTGCCACTCA+TGG 0.484179 8_1:-70405967 Msa1211040:CDS
ACCTGGTTCCAGTCTGGTAC+TGG 0.484249 8_1:+70405996 None:intergenic
ATGGTTATTAAGCAACCCTA+TGG 0.492202 8_1:-70404332 Msa1211040:CDS
CTCTCGGTCCTAATCCCCAT+AGG 0.493796 8_1:+70404316 None:intergenic
TGAGTTATGGGTAAAAGATC+TGG 0.497316 8_1:-70405178 Msa1211040:CDS
GAAACTAACTGCAAGGGTCC+AGG 0.506605 8_1:+70404986 None:intergenic
GCAAACACCTGGTTCCAGTC+TGG 0.508336 8_1:+70405990 None:intergenic
TTCTGCATGAATCTCTCTCT+CGG 0.516639 8_1:+70404300 None:intergenic
GAAATAGAGGAAGAGGAGAG+TGG 0.516991 8_1:+70407419 None:intergenic
TACTTGGGAAATAGAGGAAG+AGG 0.521735 8_1:+70407412 None:intergenic
ATAAAATGTCTGCAATGGAC+AGG 0.522666 8_1:+70404201 None:intergenic
GCAGTGGTAGGTTTCTTATG+TGG 0.523016 8_1:-70405398 Msa1211040:CDS
CAGTTGGTAGAATCATATCC+TGG 0.532880 8_1:-70405004 Msa1211040:CDS
TGGTTATTAAGCAACCCTAT+GGG 0.534053 8_1:-70404331 Msa1211040:CDS
TGGGTTATTGCTGTGGAGGT+TGG 0.534304 8_1:-70407571 Msa1211040:CDS
CTCCTGCACCAGTACCAGAC+TGG 0.539916 8_1:-70406004 Msa1211040:CDS
CGGTGGGGTTGAAGAGAAAG+AGG 0.544282 8_1:-70407599 None:intergenic
GGTGAAAATGAGAGTGAGAG+TGG 0.548892 8_1:+70407479 None:intergenic
ACTCAATCTCTCTAACAACT+TGG 0.549026 8_1:-70407315 Msa1211040:intron
CAAAATTGAAACTAACTGCA+AGG 0.551890 8_1:+70404979 None:intergenic
ATGGGTAAAAGATCTGGCTC+TGG 0.555239 8_1:-70405172 Msa1211040:CDS
ACACTATAAAATGTCTGCAA+TGG 0.555855 8_1:+70404196 None:intergenic
TGTAGATAATTTATCTCCTG+GGG 0.562130 8_1:-70404604 Msa1211040:CDS
AAATAATGACAGGCAGTGGT+AGG 0.578508 8_1:-70405410 Msa1211040:intron
TGGGATTGGAAATACGGCAA+AGG 0.583272 8_1:-70405341 Msa1211040:CDS
GAGCAGGGTCTGCAAACACC+TGG 0.584261 8_1:+70405979 None:intergenic
GGGGAAATGGGTTATTGCTG+TGG 0.588504 8_1:-70407578 Msa1211040:exon
GAAATGGGTTATTGCTGTGG+AGG 0.594719 8_1:-70407575 Msa1211040:CDS
CATTCTCTTAGGATGCCTAC+CGG 0.595714 8_1:-70404119 Msa1211040:three_prime_UTR
CACTGTCACACAATATAGAA+GGG 0.596542 8_1:+70404359 None:intergenic
TCTCGGTCCTAATCCCCATA+GGG 0.597669 8_1:+70404317 None:intergenic
ACCAGTACCAGACTGGAACC+AGG 0.600428 8_1:-70405997 Msa1211040:CDS
ATATGTTCAACATCAACCAC+AGG 0.611589 8_1:-70404153 Msa1211040:three_prime_UTR
CTCATGGTGGATATTGGATG+TGG 0.615858 8_1:-70405951 Msa1211040:intron
TTCATGCAGAATTCGAAGGA+GGG 0.618770 8_1:-70404288 Msa1211040:CDS
GAGATTCATGCAGAATTCGA+AGG 0.619717 8_1:-70404292 Msa1211040:CDS
AAAATTGAAACTAACTGCAA+GGG 0.620397 8_1:+70404980 None:intergenic
CCCTGCTCTGCCACTCATGG+TGG 0.621197 8_1:-70405964 Msa1211040:CDS
AAGGAGGGAAAATCTATCGA+AGG 0.623652 8_1:-70404273 Msa1211040:CDS
CCACCATGAGTGGCAGAGCA+GGG 0.630245 8_1:+70405964 None:intergenic
ATTCATGCAGAATTCGAAGG+AGG 0.630607 8_1:-70404289 Msa1211040:CDS
GGTTATTAAGCAACCCTATG+GGG 0.641395 8_1:-70404330 Msa1211040:CDS
ACAGTCTGATGTGGTTGAAG+TGG 0.648166 8_1:-70404443 Msa1211040:CDS
CATCCAATATCCACCATGAG+TGG 0.650715 8_1:+70405954 None:intergenic
GGTATTTGTACAGTCTGATG+TGG 0.665592 8_1:-70404452 Msa1211040:CDS
TCTACAATAGCACCAACCAA+AGG 0.670279 8_1:+70404621 None:intergenic
GGTGGGGTTGAAGAGAAAGA+GGG 0.671119 8_1:-70407598 None:intergenic
TCTATATTGTGTGACAGTGA+AGG 0.673502 8_1:-70404355 Msa1211040:CDS
TATTGTGTGACAGTGAAGGA+TGG 0.681117 8_1:-70404351 Msa1211040:CDS
GTAGATAATTTATCTCCTGG+GGG 0.693547 8_1:-70404603 Msa1211040:CDS
GTGGGGTTGAAGAGAAAGAG+GGG 0.718218 8_1:-70407597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAAATGATATTTTTAT+AGG - chr8_1:70404911-70404930 Msa1211040:intron 10.0%
!!! TAATATTTTCAGTTTAAAGT+GGG + chr8_1:70404341-70404360 None:intergenic 15.0%
!!! ATAATATTTTCAGTTTAAAG+TGG + chr8_1:70404342-70404361 None:intergenic 15.0%
!! AATAAGAATAAACTACTAAA+GGG + chr8_1:70404490-70404509 None:intergenic 15.0%
!! TATAAAACAGTTTAATACAA+TGG - chr8_1:70404540-70404559 Msa1211040:intron 15.0%
!!! TATCATTTTTTTGTTTGTTT+TGG + chr8_1:70404904-70404923 None:intergenic 15.0%
!! AACATATAACTTATAATGAA+TGG + chr8_1:70404955-70404974 None:intergenic 15.0%
!! TTCATTATAAGTTATATGTT+AGG - chr8_1:70404955-70404974 Msa1211040:intron 15.0%
!! AAAACGTAAAATAAACATAA+GGG + chr8_1:70404982-70405001 None:intergenic 15.0%
!! TAAAACGTAAAATAAACATA+AGG + chr8_1:70404983-70405002 None:intergenic 15.0%
!!! ACTTGAACATTTTAAATATA+GGG + chr8_1:70405014-70405033 None:intergenic 15.0%
!!! AACTTGAACATTTTAAATAT+AGG + chr8_1:70405015-70405034 None:intergenic 15.0%
!!! TATATTTAAAATGTTCAAGT+TGG - chr8_1:70405014-70405033 Msa1211040:CDS 15.0%
!!! TGGTTAAAATGTATATTTTT+TGG - chr8_1:70405335-70405354 Msa1211040:intron 15.0%
!! CTTGATATATAACATATTTA+TGG - chr8_1:70407047-70407066 Msa1211040:intron 15.0%
!! CAATATTTAGATAAAAATAC+CGG + chr8_1:70407510-70407529 None:intergenic 15.0%
!! ATAAGAATAAACTACTAAAG+GGG + chr8_1:70404489-70404508 None:intergenic 20.0%
!! GAATAAGAATAAACTACTAA+AGG + chr8_1:70404491-70404510 None:intergenic 20.0%
!! ACACCATTAATCAATTATAA+CGG + chr8_1:70404637-70404656 None:intergenic 20.0%
!! ATTAAACCTTATTCATTGTA+TGG - chr8_1:70404687-70404706 Msa1211040:intron 20.0%
!! ATTTAACCATACAATGAATA+AGG + chr8_1:70404696-70404715 None:intergenic 20.0%
!! ACAAAATTCGAGATAATTAA+AGG + chr8_1:70404731-70404750 None:intergenic 20.0%
!! CAAAATTACATGCTTTAATA+GGG + chr8_1:70404811-70404830 None:intergenic 20.0%
!! ACAAAATTACATGCTTTAAT+AGG + chr8_1:70404812-70404831 None:intergenic 20.0%
!! TAATTTGAAAGACTGATAAA+TGG - chr8_1:70404831-70404850 Msa1211040:intron 20.0%
!! AATTTGAAAGACTGATAAAT+GGG - chr8_1:70404832-70404851 Msa1211040:intron 20.0%
!!! AAGAAAATGTAACTTTTCTA+GGG - chr8_1:70404871-70404890 Msa1211040:intron 20.0%
!!! GTTTATTTTACGTTTTAAGT+CGG - chr8_1:70404986-70405005 Msa1211040:CDS 20.0%
!!! CTTGAACATTTTAAATATAG+GGG + chr8_1:70405013-70405032 None:intergenic 20.0%
!!! TTAGAACCTTTTTAAACATA+GGG - chr8_1:70405236-70405255 Msa1211040:intron 20.0%
!!! CCTTTTATATAATATAGTGA+AGG + chr8_1:70405312-70405331 None:intergenic 20.0%
!! CCTTCACTATATTATATAAA+AGG - chr8_1:70405309-70405328 Msa1211040:intron 20.0%
!! CTATATTATATAAAAGGTTG+TGG - chr8_1:70405315-70405334 Msa1211040:intron 20.0%
!! GTTATCAAACTATATATATG+TGG + chr8_1:70405384-70405403 None:intergenic 20.0%
!!! ATCTCAATTTCATTGATAAT+TGG - chr8_1:70405681-70405700 Msa1211040:intron 20.0%
!!! ACTTTGATTATAAGATGTTT+TGG + chr8_1:70405865-70405884 None:intergenic 20.0%
!! TGCTGAATATTTAAATTTGT+GGG + chr8_1:70406744-70406763 None:intergenic 20.0%
!! AATTTAAATATTCAGCACAT+TGG - chr8_1:70406747-70406766 Msa1211040:intron 20.0%
!!! TTTTCTACTTTTTCTTATAG+TGG - chr8_1:70407532-70407551 Msa1211040:CDS 20.0%
!!! CTGTTTTTTTGTCAAATTTC+AGG - chr8_1:70404368-70404387 Msa1211040:CDS 25.0%
!! TTTTGTCAAATTTCAGGATA+TGG - chr8_1:70404374-70404393 Msa1211040:CDS 25.0%
! TTTGTCAAATTTCAGGATAT+GGG - chr8_1:70404375-70404394 Msa1211040:CDS 25.0%
! GAATTGGTATATGTAAAGAA+AGG + chr8_1:70404457-70404476 None:intergenic 25.0%
!!! ACAGTTTAATTTTGATACAC+TGG - chr8_1:70404514-70404533 Msa1211040:intron 25.0%
!! TCTAAAGTCAAACATTAGAT+TGG + chr8_1:70404576-70404595 None:intergenic 25.0%
!! CAAGAAAATGTAACTTTTCT+AGG - chr8_1:70404870-70404889 Msa1211040:intron 25.0%
!!! AATGATATTTTTATAGGAGC+TGG - chr8_1:70404917-70404936 Msa1211040:intron 25.0%
! AGAGTTAACTCAAAATTTGA+CGG + chr8_1:70405078-70405097 None:intergenic 25.0%
!! GTTAGAACCTTTTTAAACAT+AGG - chr8_1:70405235-70405254 Msa1211040:intron 25.0%
!! TAGAACCTTTTTAAACATAG+GGG - chr8_1:70405237-70405256 Msa1211040:intron 25.0%
! TGATTAGATACTAGTGTAAA+AGG + chr8_1:70405419-70405438 None:intergenic 25.0%
!!! CATTTTTTCACACCAATTTT+AGG - chr8_1:70405447-70405466 Msa1211040:intron 25.0%
! CAATATACCATTCCTAAAAT+TGG + chr8_1:70405462-70405481 None:intergenic 25.0%
! TTAGGAATGGTATATTGATA+AGG - chr8_1:70405465-70405484 Msa1211040:intron 25.0%
! ATAAACAAACCAGACATAAT+AGG - chr8_1:70405496-70405515 Msa1211040:intron 25.0%
! TTGGTTCAATAAAACAGAAA+GGG + chr8_1:70405846-70405865 None:intergenic 25.0%
!! TTTGGTTCAATAAAACAGAA+AGG + chr8_1:70405847-70405866 None:intergenic 25.0%
!! TGTTGTTTGAAAATAATGAC+AGG - chr8_1:70406187-70406206 Msa1211040:intron 25.0%
! ACCTAAAGTGAGAAATTATT+TGG - chr8_1:70406246-70406265 Msa1211040:intron 25.0%
! CCTAAAGTGAGAAATTATTT+GGG - chr8_1:70406247-70406266 Msa1211040:intron 25.0%
!! ATTATTTGGGATTGGAAATA+CGG - chr8_1:70406260-70406279 Msa1211040:intron 25.0%
! GAAATCAAAATTTACTGGAA+GGG + chr8_1:70406316-70406335 None:intergenic 25.0%
! AGAAATCAAAATTTACTGGA+AGG + chr8_1:70406317-70406336 None:intergenic 25.0%
! GATGAGAAATCAAAATTTAC+TGG + chr8_1:70406321-70406340 None:intergenic 25.0%
!! TGGCATCTAAATAAAGTTTT+CGG + chr8_1:70406479-70406498 None:intergenic 25.0%
! TATGTGTGTGTAATTTACTT+TGG + chr8_1:70406499-70406518 None:intergenic 25.0%
! AAAATTGAAACTAACTGCAA+GGG + chr8_1:70406630-70406649 None:intergenic 25.0%
!! AAAGCACTAAAAAGAGAAAT+TGG - chr8_1:70406664-70406683 Msa1211040:intron 25.0%
! AAGCACTAAAAAGAGAAATT+GGG - chr8_1:70406665-70406684 Msa1211040:intron 25.0%
! GTGCTGAATATTTAAATTTG+TGG + chr8_1:70406745-70406764 None:intergenic 25.0%
! AACTATAAATAAAACACCCT+TGG + chr8_1:70406888-70406907 None:intergenic 25.0%
!!! GATGTTTTTTCTTGAAATGA+GGG + chr8_1:70406943-70406962 None:intergenic 25.0%
!!! TGATGTTTTTTCTTGAAATG+AGG + chr8_1:70406944-70406963 None:intergenic 25.0%
! ATTGTAGATAATTTATCTCC+TGG - chr8_1:70407001-70407020 Msa1211040:intron 25.0%
! TTGTAGATAATTTATCTCCT+GGG - chr8_1:70407002-70407021 Msa1211040:intron 25.0%
! ATTTAGATAAAAATACCGGT+AGG + chr8_1:70407506-70407525 None:intergenic 25.0%
! TTTCAGTTTAAAGTGGGAAT+TGG + chr8_1:70404335-70404354 None:intergenic 30.0%
ACAGAGAAAGAAGAACTTAA+GGG + chr8_1:70404429-70404448 None:intergenic 30.0%
TACAGAGAAAGAAGAACTTA+AGG + chr8_1:70404430-70404449 None:intergenic 30.0%
AAAGGGGAAAACAATTGAAT+TGG + chr8_1:70404473-70404492 None:intergenic 30.0%
CCATTAATCAATTATAACGG+TGG + chr8_1:70404634-70404653 None:intergenic 30.0%
CCACCGTTATAATTGATTAA+TGG - chr8_1:70404631-70404650 Msa1211040:CDS 30.0%
GTAAAAAATCTTTACACCGA+CGG - chr8_1:70404655-70404674 Msa1211040:CDS 30.0%
! TGAAGAAATTTTGCTGACAT+TGG + chr8_1:70405052-70405071 None:intergenic 30.0%
! AGAACCTTTTTAAACATAGG+GGG - chr8_1:70405238-70405257 Msa1211040:intron 30.0%
TGAAACCTAAAATAGAGGTA+AGG - chr8_1:70405267-70405286 Msa1211040:intron 30.0%
GAAACCTAAAATAGAGGTAA+GGG - chr8_1:70405268-70405287 Msa1211040:intron 30.0%
TGAAGGCTAAATTGTATGTT+TGG + chr8_1:70405295-70405314 None:intergenic 30.0%
!! TTTCACACCAATTTTAGGAA+TGG - chr8_1:70405452-70405471 Msa1211040:intron 30.0%
!! TTATGTCTGGTTTGTTTATC+CGG + chr8_1:70405495-70405514 None:intergenic 30.0%
AAAGAAATGCCTATTATGTC+TGG + chr8_1:70405508-70405527 None:intergenic 30.0%
TAATCATTAGACGAAAGCAA+GGG + chr8_1:70405569-70405588 None:intergenic 30.0%
ATAATCATTAGACGAAAGCA+AGG + chr8_1:70405570-70405589 None:intergenic 30.0%
ATGCATTTGTTCTTGATTGT+TGG - chr8_1:70405721-70405740 Msa1211040:intron 30.0%
TTAGCCTACATGTTATTGAT+TGG - chr8_1:70405746-70405765 Msa1211040:intron 30.0%
AATGCCAATCAATAACATGT+AGG + chr8_1:70405753-70405772 None:intergenic 30.0%
! TACATGTTATTGATTGGCAT+TGG - chr8_1:70405752-70405771 Msa1211040:intron 30.0%
ATTATCAACTTCCACATAGA+TGG + chr8_1:70405792-70405811 None:intergenic 30.0%
TATAACAATGTCGACAATTG+TGG + chr8_1:70406100-70406119 None:intergenic 30.0%
CCCAAATAATTTCTCACTTT+AGG + chr8_1:70406250-70406269 None:intergenic 30.0%
! AGTGAGAAATTATTTGGGAT+TGG - chr8_1:70406252-70406271 Msa1211040:intron 30.0%
! TTTGATTTCTCATCCAGTTA+TGG - chr8_1:70406327-70406346 Msa1211040:intron 30.0%
CAAAATTGAAACTAACTGCA+AGG + chr8_1:70406631-70406650 None:intergenic 30.0%
!! CTTGCAGTTAGTTTCAATTT+TGG - chr8_1:70406629-70406648 Msa1211040:intron 30.0%
TTAAATATTCAGCACATTGG+TGG - chr8_1:70406750-70406769 Msa1211040:intron 30.0%
! AAAAGCAAAGCAGATTTTGA+CGG - chr8_1:70406799-70406818 Msa1211040:intron 30.0%
TGTAGATAATTTATCTCCTG+GGG - chr8_1:70407003-70407022 Msa1211040:intron 30.0%
GGCATGAAATATCACTAAAA+GGG + chr8_1:70407083-70407102 None:intergenic 30.0%
AGGCATGAAATATCACTAAA+AGG + chr8_1:70407084-70407103 None:intergenic 30.0%
!! TCAATCACATCTGTTTCTTT+TGG + chr8_1:70407365-70407384 None:intergenic 30.0%
ACACTATAAAATGTCTGCAA+TGG + chr8_1:70407414-70407433 None:intergenic 30.0%
! AGAAAAGTATGCATTCTCTT+AGG - chr8_1:70407477-70407496 Msa1211040:CDS 30.0%
CGTCACAAGAAGTTAGTATA+TGG - chr8_1:70404080-70404099 Msa1211040:three_prime_UTR 35.0%
GTTGTGACTTATGTTGTTGT+TGG + chr8_1:70404235-70404254 None:intergenic 35.0%
ACTCAATCTCTCTAACAACT+TGG - chr8_1:70404292-70404311 Msa1211040:CDS 35.0%
GTTTAATTCATATACGCCGT+CGG + chr8_1:70404674-70404693 None:intergenic 35.0%
TGGCTTGAAACCTAAAATAG+AGG - chr8_1:70405262-70405281 Msa1211040:intron 35.0%
GGTATATTGATAAGGAGAAC+CGG - chr8_1:70405473-70405492 Msa1211040:intron 35.0%
CATAAACAATGAAAGGCAGA+AGG + chr8_1:70405539-70405558 None:intergenic 35.0%
TCTGCCTTTCATTGTTTATG+AGG - chr8_1:70405539-70405558 Msa1211040:intron 35.0%
CTGCCTTTCATTGTTTATGA+GGG - chr8_1:70405540-70405559 Msa1211040:intron 35.0%
TGCCTTTCATTGTTTATGAG+GGG - chr8_1:70405541-70405560 Msa1211040:intron 35.0%
!! TTATTGATTGGCATTGGCAT+TGG - chr8_1:70405758-70405777 Msa1211040:intron 35.0%
! AACTCTTTTACCCTAACATC+AGG - chr8_1:70405902-70405921 Msa1211040:intron 35.0%
TTTACCACATCCTGATGTTA+GGG + chr8_1:70405915-70405934 None:intergenic 35.0%
ATTTACCACATCCTGATGTT+AGG + chr8_1:70405916-70405935 None:intergenic 35.0%
! CGTAGTGGAATTTGAATCAA+TGG - chr8_1:70405967-70405986 Msa1211040:CDS 35.0%
!! TACAAAGCGTTGTCAAATAG+AGG - chr8_1:70406012-70406031 Msa1211040:intron 35.0%
! TTGTGGATTGAGGAAAATAG+CGG + chr8_1:70406083-70406102 None:intergenic 35.0%
TTGAAAATAATGACAGGCAG+TGG - chr8_1:70406193-70406212 Msa1211040:intron 35.0%
TAAGCTGAATGTACCATAAC+TGG + chr8_1:70406343-70406362 None:intergenic 35.0%
TGAGTTATGGGTAAAAGATC+TGG - chr8_1:70406429-70406448 Msa1211040:intron 35.0%
! ACCTATTTCTTTCAAGCAGT+TGG - chr8_1:70406587-70406606 Msa1211040:intron 35.0%
ACCAACTGCTTGAAAGAAAT+AGG + chr8_1:70406591-70406610 None:intergenic 35.0%
! GGCTACATTGTTGTTACTTA+AGG - chr8_1:70406854-70406873 Msa1211040:intron 35.0%
TACTTAAGGTTTGACATCCA+AGG - chr8_1:70406868-70406887 Msa1211040:intron 35.0%
ACTTAAGGTTTGACATCCAA+GGG - chr8_1:70406869-70406888 Msa1211040:intron 35.0%
TAGTTAATGATTTCCCTCAC+CGG - chr8_1:70406903-70406922 Msa1211040:intron 35.0%
! TTTTTCTTGAAATGAGGGTC+TGG + chr8_1:70406938-70406957 None:intergenic 35.0%
GTAGATAATTTATCTCCTGG+GGG - chr8_1:70407004-70407023 Msa1211040:intron 35.0%
AATCTCTTAAGTATTCTCGC+AGG + chr8_1:70407104-70407123 None:intergenic 35.0%
TGAAAAAGACAACCACAAGA+GGG + chr8_1:70407133-70407152 None:intergenic 35.0%
CACTGTCACACAATATAGAA+GGG + chr8_1:70407251-70407270 None:intergenic 35.0%
TCACTGTCACACAATATAGA+AGG + chr8_1:70407252-70407271 None:intergenic 35.0%
TCTATATTGTGTGACAGTGA+AGG - chr8_1:70407252-70407271 Msa1211040:intron 35.0%
ATGGTTATTAAGCAACCCTA+TGG - chr8_1:70407275-70407294 Msa1211040:intron 35.0%
TGGTTATTAAGCAACCCTAT+GGG - chr8_1:70407276-70407295 Msa1211040:intron 35.0%
ATAAAATGTCTGCAATGGAC+AGG + chr8_1:70407409-70407428 None:intergenic 35.0%
ATATGTTCAACATCAACCAC+AGG - chr8_1:70407454-70407473 Msa1211040:CDS 35.0%
TTGAAGAGAAAGAGGGGAAA+TGG - chr8_1:70404016-70404035 Msa1211040:three_prime_UTR 40.0%
TGAAGAGAAAGAGGGGAAAT+GGG - chr8_1:70404017-70404036 Msa1211040:three_prime_UTR 40.0%
GAAGAAGAAGAAGAAGAGAG+AGG + chr8_1:70404161-70404180 None:intergenic 40.0%
TACTTGGGAAATAGAGGAAG+AGG + chr8_1:70404198-70404217 None:intergenic 40.0%
! AGCTGTTACTTGGGAAATAG+AGG + chr8_1:70404204-70404223 None:intergenic 40.0%
! GTCTTGTTCAGCTGTTACTT+GGG + chr8_1:70404213-70404232 None:intergenic 40.0%
! TGCTGACATTGGTTACGTAA+GGG + chr8_1:70405041-70405060 None:intergenic 40.0%
! TTGCTGACATTGGTTACGTA+AGG + chr8_1:70405042-70405061 None:intergenic 40.0%
! TGGTCCCTTACCTCTATTTT+AGG + chr8_1:70405275-70405294 None:intergenic 40.0%
GCCTTTCATTGTTTATGAGG+GGG - chr8_1:70405542-70405561 Msa1211040:intron 40.0%
ACCCCCTCATAAACAATGAA+AGG + chr8_1:70405546-70405565 None:intergenic 40.0%
TTTACCCTAACATCAGGATG+TGG - chr8_1:70405908-70405927 Msa1211040:intron 40.0%
TCAGGATGTGGTAAATGAGT+AGG - chr8_1:70405920-70405939 Msa1211040:intron 40.0%
AAATAGCAGCTATAGCGTAG+TGG - chr8_1:70405952-70405971 Msa1211040:CDS 40.0%
!! AAAGCGTTGTCAAATAGAGG+CGG - chr8_1:70406015-70406034 Msa1211040:intron 40.0%
! ATGTCGACAATTGTGGATTG+AGG + chr8_1:70406093-70406112 None:intergenic 40.0%
!! GAGTAAGTGTGCTGTTTATC+AGG + chr8_1:70406154-70406173 None:intergenic 40.0%
AAATAATGACAGGCAGTGGT+AGG - chr8_1:70406197-70406216 Msa1211040:intron 40.0%
ACTTTGATTCCATGTGCAGA+TGG - chr8_1:70406396-70406415 Msa1211040:intron 40.0%
!! CAGTTGGTAGAATCATATCC+TGG - chr8_1:70406603-70406622 Msa1211040:intron 40.0%
! TCACTGTCCTAATGGTTTGT+TGG - chr8_1:70406690-70406709 Msa1211040:intron 40.0%
AATCCAGCCAACAAACCATT+AGG + chr8_1:70406700-70406719 None:intergenic 40.0%
!! AATGGTTTGTTGGCTGGATT+TGG - chr8_1:70406700-70406719 Msa1211040:intron 40.0%
ATTTGTGGGATTGTGACTAC+AGG + chr8_1:70406730-70406749 None:intergenic 40.0%
! AAGAGTTTTGCAGAAGCCTT+TGG - chr8_1:70406970-70406989 Msa1211040:intron 40.0%
TCTACAATAGCACCAACCAA+AGG + chr8_1:70406989-70407008 None:intergenic 40.0%
! GAGATTCATTTTCCCTCTTG+TGG - chr8_1:70407118-70407137 Msa1211040:intron 40.0%
GTGAAAAAGACAACCACAAG+AGG + chr8_1:70407134-70407153 None:intergenic 40.0%
!! CTTGTGGTTGTCTTTTTCAC+AGG - chr8_1:70407134-70407153 Msa1211040:intron 40.0%
GGTATTTGTACAGTCTGATG+TGG - chr8_1:70407155-70407174 Msa1211040:intron 40.0%
GTGCATCAACTTCATCAAAC+TGG + chr8_1:70407206-70407225 None:intergenic 40.0%
TATTGTGTGACAGTGAAGGA+TGG - chr8_1:70407256-70407275 Msa1211040:intron 40.0%
GGTTATTAAGCAACCCTATG+GGG - chr8_1:70407277-70407296 Msa1211040:intron 40.0%
TTCTGCATGAATCTCTCTCT+CGG + chr8_1:70407310-70407329 None:intergenic 40.0%
GAGATTCATGCAGAATTCGA+AGG - chr8_1:70407315-70407334 Msa1211040:intron 40.0%
ATTCATGCAGAATTCGAAGG+AGG - chr8_1:70407318-70407337 Msa1211040:CDS 40.0%
TTCATGCAGAATTCGAAGGA+GGG - chr8_1:70407319-70407338 Msa1211040:CDS 40.0%
AAGGAGGGAAAATCTATCGA+AGG - chr8_1:70407334-70407353 Msa1211040:CDS 40.0%
! GAATGCATACTTTTCTCCTG+TGG + chr8_1:70407473-70407492 None:intergenic 40.0%
!! GAAATGGGTTATTGCTGTGG+AGG - chr8_1:70404032-70404051 Msa1211040:three_prime_UTR 45.0%
GGTGAAAATGAGAGTGAGAG+TGG + chr8_1:70404131-70404150 None:intergenic 45.0%
GAAGAAGAGAGAGGACGAAA+GGG + chr8_1:70404152-70404171 None:intergenic 45.0%
AGAAGAAGAGAGAGGACGAA+AGG + chr8_1:70404153-70404172 None:intergenic 45.0%
GAAATAGAGGAAGAGGAGAG+TGG + chr8_1:70404191-70404210 None:intergenic 45.0%
!! GGTCTTGTTCAGCTGTTACT+TGG + chr8_1:70404214-70404233 None:intergenic 45.0%
ACGCACATGGATGACTTATG+GGG + chr8_1:70405123-70405142 None:intergenic 45.0%
GACGCACATGGATGACTTAT+GGG + chr8_1:70405124-70405143 None:intergenic 45.0%
AGACGCACATGGATGACTTA+TGG + chr8_1:70405125-70405144 None:intergenic 45.0%
GTGTTTAACAGAGACGCACA+TGG + chr8_1:70405136-70405155 None:intergenic 45.0%
CCAGCCCCCTATGTTTAAAA+AGG + chr8_1:70405245-70405264 None:intergenic 45.0%
! CCTTTTTAAACATAGGGGGC+TGG - chr8_1:70405242-70405261 Msa1211040:intron 45.0%
CATCCAATATCCACCATGAG+TGG + chr8_1:70405656-70405675 None:intergenic 45.0%
!! CTCATGGTGGATATTGGATG+TGG - chr8_1:70405656-70405675 Msa1211040:intron 45.0%
! TGGCTTGGATACCATCTATG+TGG - chr8_1:70405778-70405797 Msa1211040:intron 45.0%
GCAGTGGTAGGTTTCTTATG+TGG - chr8_1:70406209-70406228 Msa1211040:intron 45.0%
TGGGATTGGAAATACGGCAA+AGG - chr8_1:70406266-70406285 Msa1211040:intron 45.0%
GGGATTGGAAATACGGCAAA+GGG - chr8_1:70406267-70406286 Msa1211040:intron 45.0%
TGGAAATACGGCAAAGGGTA+AGG - chr8_1:70406272-70406291 Msa1211040:intron 45.0%
! ATGGGTAAAAGATCTGGCTC+TGG - chr8_1:70406435-70406454 Msa1211040:intron 45.0%
!! ATTGGGTGTCACTGTCCTAA+TGG - chr8_1:70406682-70406701 Msa1211040:intron 45.0%
!! TGTCCTAATGGTTTGTTGGC+TGG - chr8_1:70406694-70406713 Msa1211040:intron 45.0%
! GTTTTGCAGAAGCCTTTGGT+TGG - chr8_1:70406974-70406993 Msa1211040:intron 45.0%
TAATTTATCTCCTGGGGGAC+AGG - chr8_1:70407009-70407028 Msa1211040:intron 45.0%
AGAAAATATACCTGTCCCCC+AGG + chr8_1:70407022-70407041 None:intergenic 45.0%
ACAGTCTGATGTGGTTGAAG+TGG - chr8_1:70407164-70407183 Msa1211040:intron 45.0%
TAAGCAACCCTATGGGGATT+AGG - chr8_1:70407283-70407302 Msa1211040:intron 45.0%
CATTCTCTTAGGATGCCTAC+CGG - chr8_1:70407488-70407507 Msa1211040:CDS 45.0%
!! ATTTATTTATTTGTAATTTA+AGG - chr8_1:70407573-70407592 Msa1211040:CDS 5.0%
!! GGGGAAATGGGTTATTGCTG+TGG - chr8_1:70404029-70404048 Msa1211040:three_prime_UTR 50.0%
TGGGTTATTGCTGTGGAGGT+TGG - chr8_1:70404036-70404055 Msa1211040:three_prime_UTR 50.0%
! CTCTGTCTAGAATGTCCACG+TGG - chr8_1:70405094-70405113 Msa1211040:intron 50.0%
CGCACATGGATGACTTATGG+GGG + chr8_1:70405122-70405141 None:intergenic 50.0%
GTGCGTCTCTGTTAAACACG+TGG - chr8_1:70405137-70405156 Msa1211040:intron 50.0%
!! CTGCCACTCATGGTGGATAT+TGG - chr8_1:70405650-70405669 Msa1211040:intron 50.0%
!! GATTGGCATTGGCATTGGCT+TGG - chr8_1:70405763-70405782 Msa1211040:intron 50.0%
TGGTGAAGCGTGCTGAGTTA+TGG - chr8_1:70406416-70406435 Msa1211040:intron 50.0%
GGTGAAGCGTGCTGAGTTAT+GGG - chr8_1:70406417-70406436 Msa1211040:intron 50.0%
GAAACTAACTGCAAGGGTCC+AGG + chr8_1:70406624-70406643 None:intergenic 50.0%
GACTGCAGGCGATCACTTAT+TGG - chr8_1:70406833-70406852 Msa1211040:intron 50.0%
TCTCGGTCCTAATCCCCATA+GGG + chr8_1:70407293-70407312 None:intergenic 50.0%
!! TTCCAGTCTGGTACTGGTGC+AGG + chr8_1:70405608-70405627 None:intergenic 55.0%
ACCAGTACCAGACTGGAACC+AGG - chr8_1:70405610-70405629 Msa1211040:intron 55.0%
ACCTGGTTCCAGTCTGGTAC+TGG + chr8_1:70405614-70405633 None:intergenic 55.0%
GCAAACACCTGGTTCCAGTC+TGG + chr8_1:70405620-70405639 None:intergenic 55.0%
CACGCTTCACCATCTGCACA+TGG + chr8_1:70406408-70406427 None:intergenic 55.0%
CTCTCGGTCCTAATCCCCAT+AGG + chr8_1:70407294-70407313 None:intergenic 55.0%
!! TGACTTATGGGGGTGCCACG+TGG + chr8_1:70405112-70405131 None:intergenic 60.0%
CTCCTGCACCAGTACCAGAC+TGG - chr8_1:70405603-70405622 Msa1211040:intron 60.0%
GAGCAGGGTCTGCAAACACC+TGG + chr8_1:70405631-70405650 None:intergenic 60.0%
AGACCCTGCTCTGCCACTCA+TGG - chr8_1:70405640-70405659 Msa1211040:intron 60.0%
CCACCATGAGTGGCAGAGCA+GGG + chr8_1:70405646-70405665 None:intergenic 60.0%
TCCACCATGAGTGGCAGAGC+AGG + chr8_1:70405647-70405666 None:intergenic 60.0%
CTGGACACTGCATCCGGTGA+GGG + chr8_1:70406919-70406938 None:intergenic 60.0%
TCTGGACACTGCATCCGGTG+AGG + chr8_1:70406920-70406939 None:intergenic 60.0%
GAGGGTCTGGACACTGCATC+CGG + chr8_1:70406925-70406944 None:intergenic 60.0%
CCCTGCTCTGCCACTCATGG+TGG - chr8_1:70405643-70405662 Msa1211040:intron 65.0%
CGGCGTGAGACTGTGACTGC+AGG - chr8_1:70406819-70406838 Msa1211040:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 70404015 70407614 70404015 ID=Msa1211040;Name=Msa1211040
chr8_1 mRNA 70404015 70407614 70404015 ID=Msa1211040-mRNA-1;Parent=Msa1211040;Name=Msa1211040-mRNA-1;_AED=0.40;_eAED=0.40;_QI=20|1|1|1|1|1|8|234|316
chr8_1 exon 70404015 70404473 70404015 ID=Msa1211040-mRNA-1:exon:23602;Parent=Msa1211040-mRNA-1
chr8_1 exon 70404599 70404697 70404599 ID=Msa1211040-mRNA-1:exon:23601;Parent=Msa1211040-mRNA-1
chr8_1 exon 70404979 70405063 70404979 ID=Msa1211040-mRNA-1:exon:23600;Parent=Msa1211040-mRNA-1
chr8_1 exon 70405165 70405214 70405165 ID=Msa1211040-mRNA-1:exon:23599;Parent=Msa1211040-mRNA-1
chr8_1 exon 70405341 70405420 70405341 ID=Msa1211040-mRNA-1:exon:23598;Parent=Msa1211040-mRNA-1
chr8_1 exon 70405952 70406027 70405952 ID=Msa1211040-mRNA-1:exon:23597;Parent=Msa1211040-mRNA-1
chr8_1 exon 70407183 70407239 70407183 ID=Msa1211040-mRNA-1:exon:23596;Parent=Msa1211040-mRNA-1
chr8_1 exon 70407316 70407614 70407316 ID=Msa1211040-mRNA-1:exon:23595;Parent=Msa1211040-mRNA-1
chr8_1 five_prime_UTR 70407595 70407614 70407595 ID=Msa1211040-mRNA-1:five_prime_utr;Parent=Msa1211040-mRNA-1
chr8_1 CDS 70407316 70407594 70407316 ID=Msa1211040-mRNA-1:cds;Parent=Msa1211040-mRNA-1
chr8_1 CDS 70407183 70407239 70407183 ID=Msa1211040-mRNA-1:cds;Parent=Msa1211040-mRNA-1
chr8_1 CDS 70405952 70406027 70405952 ID=Msa1211040-mRNA-1:cds;Parent=Msa1211040-mRNA-1
chr8_1 CDS 70405341 70405420 70405341 ID=Msa1211040-mRNA-1:cds;Parent=Msa1211040-mRNA-1
chr8_1 CDS 70405165 70405214 70405165 ID=Msa1211040-mRNA-1:cds;Parent=Msa1211040-mRNA-1
chr8_1 CDS 70404979 70405063 70404979 ID=Msa1211040-mRNA-1:cds;Parent=Msa1211040-mRNA-1
chr8_1 CDS 70404599 70404697 70404599 ID=Msa1211040-mRNA-1:cds;Parent=Msa1211040-mRNA-1
chr8_1 CDS 70404249 70404473 70404249 ID=Msa1211040-mRNA-1:cds;Parent=Msa1211040-mRNA-1
chr8_1 three_prime_UTR 70404015 70404248 70404015 ID=Msa1211040-mRNA-1:three_prime_utr;Parent=Msa1211040-mRNA-1
Gene Sequence

>Msa1211040

ATGGGTTATTGCTGTGGAGGTTGGCGTATATTACAGATACAGAGTCGTCACAAGAAGTTAGTATATGGCATTGATACTGCTTTAGTAATGTTACCACTCTCACTCTCATTTTCACCCTTTCGTCCTCTCTCTTCTTCTTCTTCTTCTTCTCTTCCACTCTCCTCTTCCTCTATTTCCCAAGTAACAGCTGAACAAGACCAACAACAACATAAGTCACAACGAAAAAGCTCACAACTTGTCGCATTAGAATATGCTGAACTCAATCTCTCTAACAACTTGGATATGGGTCATGTCAGAATCAGACAACATGTCAATCCCTTAAGTTCTTCTTTCTCTACTCCTGCACCAGTACCAGACTGGAACCAGGTGTTTGCAGACCCTGCTCTGCCACTCATGGTGGATATTGGATGTGGCAGTGGTAGGTTTCTTATGTGGCTTGCAAAAAGAACACCTAAAGTGAGAAATTATTTGGGATTGGAAATACGGCAAAGGATGGTGAAGCGTGCTGAGTTATGGGTAAAAGATCTGGCTCTGGATAACATACATTTCTTGTTTGCAAATGCACCTATTTCTTTCAAGCAGTTGGTAGAATCATATCCTGGACCCTTGCAGTTAGTTTCAATTTTGTGTCCAGACCCTCATTTCAAGAAAAAACATCATAAAAGAAGAGTTTTGCAGAAGCCTTTGGTTGGTGCTATTGTAGATAATTTATCTCCTGGGGGACAGGTATTTGTACAGTCTGATGTGGTTGAAGTGGCACTTGACATGAAAAACCAGTTTGATGAAGTTGATGCACTTAGTCACACAGATGCTTTGAACCCTTCTATATTGTGTGACAGTGAAGGATGGTTATTAAGCAACCCTATGGGGATTAGGACCGAGAGAGAGATTCATGCAGAATTCGAAGGAGGGAAAATCTATCGAAGGTTGTACCAAAAGAAACAGATGTGA

Protein sequence

>Msa1211040

MGYCCGGWRILQIQSRHKKLVYGIDTALVMLPLSLSFSPFRPLSSSSSSSLPLSSSSISQVTAEQDQQQHKSQRKSSQLVALEYAELNLSNNLDMGHVRIRQHVNPLSSSFSTPAPVPDWNQVFADPALPLMVDIGCGSGRFLMWLAKRTPKVRNYLGLEIRQRMVKRAELWVKDLALDNIHFLFANAPISFKQLVESYPGPLQLVSILCPDPHFKKKHHKRRVLQKPLVGAIVDNLSPGGQVFVQSDVVEVALDMKNQFDEVDALSHTDALNPSILCDSEGWLLSNPMGIRTEREIHAEFEGGKIYRRLYQKKQM*