AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087500 MtrunA17_Chr8g0337231 90.476 315 29 1 1 314 1 315 0.0 569
Msa1087500 MtrunA17_Chr8g0337241 87.500 256 30 1 61 316 27 280 1.94e-165 461
Msa1087500 MtrunA17_Chr6g0457691 42.347 196 104 4 119 313 538 725 3.80e-42 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087500 AT5G17660.1 65.306 245 77 3 75 316 69 308 3.63e-120 348
Msa1087500 AT5G24840.1 28.512 242 128 11 99 313 23 246 5.41e-12 65.1

Find 85 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTGTAATTTA+AGG 0.065136 7_3:-220233 Msa1087500:three_prime_UTR
ACCTAAAGTGAGAAATTATT+TGG 0.126545 7_3:-221560 Msa1087500:CDS
CTTGCAGTTAGTTTCAATTT+TGG 0.187587 7_3:-221177 Msa1087500:intron
CCCAAATAATTTCTCACTTT+AGG 0.263184 7_3:+221559 None:intergenic
TCAATCACATCTGTTTCTTT+TGG 0.300643 7_3:+220444 None:intergenic
GGTCTTGTTCAGCTGTTACT+TGG 0.321900 7_3:+223599 None:intergenic
TAAGCAACCCTATGGGGATT+AGG 0.326313 7_3:-220523 Msa1087500:CDS
ATTATTTGGGATTGGAAATA+CGG 0.335361 7_3:-221546 Msa1087500:CDS
CTGCCACTCATGGTGGATAT+TGG 0.351376 7_3:-222156 Msa1087500:CDS
TTGAAGAGAAAGAGGGGAAA+TGG 0.356944 7_3:-223794 Msa1087500:exon
TCACTGTCACACAATATAGA+AGG 0.376117 7_3:+220557 None:intergenic
GGGGAAATGGGTTATTGCTT+TGG 0.377517 7_3:-223781 Msa1087500:exon
ACCAACTGCTTGAAAGAAAT+AGG 0.378434 7_3:+221218 None:intergenic
CGTCACAAGAAGTTAGTATA+TGG 0.384046 7_3:-223730 Msa1087500:CDS
AGAAAAGTATGCATTCTCTT+AGG 0.387543 7_3:-220329 Msa1087500:three_prime_UTR
TTTGTCAAATTTCAGGATAT+GGG 0.389407 7_3:-223431 Msa1087500:intron
TACAGAGAAAGAAGAACTTA+AGG 0.390216 7_3:+223379 None:intergenic
AGTGAGAAATTATTTGGGAT+TGG 0.396847 7_3:-221554 Msa1087500:CDS
GTTGTGACTTATGTTGTTGT+TGG 0.400793 7_3:+223578 None:intergenic
CCTAAAGTGAGAAATTATTT+GGG 0.400944 7_3:-221559 Msa1087500:CDS
GAAGAAGAGAGAGGACGAAA+GGG 0.402215 7_3:+223661 None:intergenic
GTGCATCAACTTCATCAAAC+TGG 0.411217 7_3:+220603 None:intergenic
GTCTTGTTCAGCTGTTACTT+GGG 0.430566 7_3:+223600 None:intergenic
TGAAGAGAAAGAGGGGAAAT+GGG 0.430964 7_3:-223793 Msa1087500:exon
TGGTGAAGCGTGCTGAGTTA+TGG 0.441715 7_3:-221390 Msa1087500:CDS
ATTGTAGATAATTTATCTCC+TGG 0.443117 7_3:-220805 Msa1087500:CDS
ACCTATTTCTTTCAAGCAGT+TGG 0.457053 7_3:-221219 Msa1087500:CDS
GGTGAAGCGTGCTGAGTTAT+GGG 0.461581 7_3:-221389 Msa1087500:CDS
TGGGTTATTGCTTTGGAGGT+TGG 0.461977 7_3:-223774 Msa1087500:CDS
TCCACCATGAGTGGCAGAGC+AGG 0.463070 7_3:+222162 None:intergenic
AGCTGTTACTTGGGAAATAG+AGG 0.464400 7_3:+223609 None:intergenic
AGAAGAAGAGAGAGGACGAA+AGG 0.467431 7_3:+223660 None:intergenic
TTGTAGATAATTTATCTCCT+GGG 0.470027 7_3:-220804 Msa1087500:CDS
TTCCAGTCTGGTACTGGTGC+AGG 0.472779 7_3:+222201 None:intergenic
ACAGAGAAAGAAGAACTTAA+GGG 0.478265 7_3:+223380 None:intergenic
GGGATTGGAAATACGGCAAA+GGG 0.483148 7_3:-221539 Msa1087500:intron
AGACCCTGCTCTGCCACTCA+TGG 0.484179 7_3:-222166 Msa1087500:CDS
ACCTGGTTCCAGTCTGGTAC+TGG 0.484249 7_3:+222195 None:intergenic
GAAATGGGTTATTGCTTTGG+AGG 0.487921 7_3:-223778 Msa1087500:CDS
ATGGTTATTAAGCAACCCTA+TGG 0.492202 7_3:-220531 Msa1087500:CDS
CTCTCGGTCCTAATCCCCAT+AGG 0.493796 7_3:+220515 None:intergenic
TGAGTTATGGGTAAAAGATC+TGG 0.497316 7_3:-221377 Msa1087500:CDS
GAAACTAACTGCAAGGGTCC+AGG 0.506605 7_3:+221185 None:intergenic
GCAAACACCTGGTTCCAGTC+TGG 0.508336 7_3:+222189 None:intergenic
TTCTGCATGAATCTCTCTCT+CGG 0.516639 7_3:+220499 None:intergenic
GAAATAGAGGAAGAGGAGAG+TGG 0.516991 7_3:+223622 None:intergenic
TACTTGGGAAATAGAGGAAG+AGG 0.521735 7_3:+223615 None:intergenic
ATAAAATGTCTGCAATGGAC+AGG 0.522666 7_3:+220400 None:intergenic
GCAGTGGTAGGTTTCTTATG+TGG 0.523016 7_3:-221597 Msa1087500:CDS
ACTCAATCTCTCTAACAACT+TGG 0.526628 7_3:-223518 Msa1087500:intron
CAGTTGGTAGAATCATATCC+TGG 0.532880 7_3:-221203 Msa1087500:CDS
TGGTTATTAAGCAACCCTAT+GGG 0.534053 7_3:-220530 Msa1087500:CDS
CTCCTGCACCAGTACCAGAC+TGG 0.539916 7_3:-222203 Msa1087500:CDS
CGGTGGGGTTGAAGAGAAAG+AGG 0.544282 7_3:-223802 None:intergenic
GGTGAAAATGAGAGTGAGAG+TGG 0.548892 7_3:+223682 None:intergenic
CAAAATTGAAACTAACTGCA+AGG 0.551890 7_3:+221178 None:intergenic
ATGGGTAAAAGATCTGGCTC+TGG 0.555239 7_3:-221371 Msa1087500:CDS
ACACTATAAAATGTCTGCAA+TGG 0.555855 7_3:+220395 None:intergenic
TGTAGATAATTTATCTCCTG+GGG 0.562130 7_3:-220803 Msa1087500:CDS
AAATAATGACAGGCAGTGGT+AGG 0.578508 7_3:-221609 Msa1087500:intron
TGGGATTGGAAATACGGCAA+AGG 0.583272 7_3:-221540 Msa1087500:CDS
GAGCAGGGTCTGCAAACACC+TGG 0.584261 7_3:+222178 None:intergenic
CATTCTCTTAGGATGCCTAC+CGG 0.595714 7_3:-220318 Msa1087500:three_prime_UTR
CACTGTCACACAATATAGAA+GGG 0.596542 7_3:+220558 None:intergenic
TCTCGGTCCTAATCCCCATA+GGG 0.597669 7_3:+220516 None:intergenic
ACCAGTACCAGACTGGAACC+AGG 0.600428 7_3:-222196 Msa1087500:CDS
ATATGTTCAACATCAACCAC+AGG 0.611589 7_3:-220352 Msa1087500:three_prime_UTR
CTCATGGTGGATATTGGATG+TGG 0.615858 7_3:-222150 Msa1087500:intron
TTCATGCAGAATTCGAAGGA+GGG 0.618770 7_3:-220487 Msa1087500:CDS
GAGATTCATGCAGAATTCGA+AGG 0.619717 7_3:-220491 Msa1087500:CDS
AAAATTGAAACTAACTGCAA+GGG 0.620397 7_3:+221179 None:intergenic
CCCTGCTCTGCCACTCATGG+TGG 0.621197 7_3:-222163 Msa1087500:CDS
AAGGAGGGAAAATCTATCGA+AGG 0.623652 7_3:-220472 Msa1087500:CDS
CCACCATGAGTGGCAGAGCA+GGG 0.630245 7_3:+222163 None:intergenic
ATTCATGCAGAATTCGAAGG+AGG 0.630607 7_3:-220488 Msa1087500:CDS
GGTTATTAAGCAACCCTATG+GGG 0.641395 7_3:-220529 Msa1087500:CDS
ACAGTCTGATGTGGTTGAAG+TGG 0.648166 7_3:-220642 Msa1087500:CDS
CATCCAATATCCACCATGAG+TGG 0.650715 7_3:+222153 None:intergenic
GGTATTTGTACAGTCTGATG+TGG 0.665592 7_3:-220651 Msa1087500:CDS
TCTACAATAGCACCAACCAA+AGG 0.670279 7_3:+220820 None:intergenic
GGTGGGGTTGAAGAGAAAGA+GGG 0.671119 7_3:-223801 None:intergenic
TCTATATTGTGTGACAGTGA+AGG 0.673502 7_3:-220554 Msa1087500:CDS
TATTGTGTGACAGTGAAGGA+TGG 0.681117 7_3:-220550 Msa1087500:CDS
GTAGATAATTTATCTCCTGG+GGG 0.693547 7_3:-220802 Msa1087500:CDS
GTGGGGTTGAAGAGAAAGAG+GGG 0.718218 7_3:-223800 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAAATGATATTTTTAT+AGG - chr7_3:221114-221133 Msa1087500:intron 10.0%
!!! TAATATTTTCAGTTTAAAGT+GGG + chr7_3:220544-220563 None:intergenic 15.0%
!!! ATAATATTTTCAGTTTAAAG+TGG + chr7_3:220545-220564 None:intergenic 15.0%
!! AATAAGAATAAACTACTAAA+GGG + chr7_3:220693-220712 None:intergenic 15.0%
!! TATAAAACAGTTTAATACAA+TGG - chr7_3:220743-220762 Msa1087500:intron 15.0%
!!! TATCATTTTTTTGTTTGTTT+TGG + chr7_3:221107-221126 None:intergenic 15.0%
!! AACATATAACTTATAATGAA+TGG + chr7_3:221158-221177 None:intergenic 15.0%
!! TTCATTATAAGTTATATGTT+AGG - chr7_3:221158-221177 Msa1087500:intron 15.0%
!! AAAACGTAAAATAAACATAA+GGG + chr7_3:221185-221204 None:intergenic 15.0%
!! TAAAACGTAAAATAAACATA+AGG + chr7_3:221186-221205 None:intergenic 15.0%
!!! ACTTGAACATTTTAAATATA+GGG + chr7_3:221217-221236 None:intergenic 15.0%
!!! AACTTGAACATTTTAAATAT+AGG + chr7_3:221218-221237 None:intergenic 15.0%
!!! TATATTTAAAATGTTCAAGT+TGG - chr7_3:221217-221236 Msa1087500:CDS 15.0%
!!! TGGTTAAAATGTATATTTTT+TGG - chr7_3:221538-221557 Msa1087500:intron 15.0%
!! CTTGATATATAACATATTTA+TGG - chr7_3:223250-223269 Msa1087500:intron 15.0%
!! CAATATTTAGATAAAAATAC+CGG + chr7_3:223713-223732 None:intergenic 15.0%
!! ATAAGAATAAACTACTAAAG+GGG + chr7_3:220692-220711 None:intergenic 20.0%
!! GAATAAGAATAAACTACTAA+AGG + chr7_3:220694-220713 None:intergenic 20.0%
!! ACACCATTAATCAATTATAA+CGG + chr7_3:220840-220859 None:intergenic 20.0%
!! ATTAAACCTTATTCATTGTA+TGG - chr7_3:220890-220909 Msa1087500:intron 20.0%
!! ATTTAACCATACAATGAATA+AGG + chr7_3:220899-220918 None:intergenic 20.0%
!! ACAAAATTCGAGATAATTAA+AGG + chr7_3:220934-220953 None:intergenic 20.0%
!! CAAAATTACATGCTTTAATA+GGG + chr7_3:221014-221033 None:intergenic 20.0%
!! ACAAAATTACATGCTTTAAT+AGG + chr7_3:221015-221034 None:intergenic 20.0%
!! TAATTTGAAAGACTGATAAA+TGG - chr7_3:221034-221053 Msa1087500:intron 20.0%
!! AATTTGAAAGACTGATAAAT+GGG - chr7_3:221035-221054 Msa1087500:intron 20.0%
!!! AAGAAAATGTAACTTTTCTA+GGG - chr7_3:221074-221093 Msa1087500:intron 20.0%
!!! GTTTATTTTACGTTTTAAGT+CGG - chr7_3:221189-221208 Msa1087500:CDS 20.0%
!!! CTTGAACATTTTAAATATAG+GGG + chr7_3:221216-221235 None:intergenic 20.0%
!!! TTAGAACCTTTTTAAACATA+GGG - chr7_3:221439-221458 Msa1087500:intron 20.0%
!!! CCTTTTATATAATATAGTGA+AGG + chr7_3:221515-221534 None:intergenic 20.0%
!! CCTTCACTATATTATATAAA+AGG - chr7_3:221512-221531 Msa1087500:intron 20.0%
!! CTATATTATATAAAAGGTTG+TGG - chr7_3:221518-221537 Msa1087500:intron 20.0%
!! GTTATCAAACTATATATATG+TGG + chr7_3:221587-221606 None:intergenic 20.0%
!!! ATCTCAATTTCATTGATAAT+TGG - chr7_3:221884-221903 Msa1087500:intron 20.0%
!!! ACTTTGATTATAAGATGTTT+TGG + chr7_3:222068-222087 None:intergenic 20.0%
!! TGCTGAATATTTAAATTTGT+GGG + chr7_3:222947-222966 None:intergenic 20.0%
!! AATTTAAATATTCAGCACAT+TGG - chr7_3:222950-222969 Msa1087500:intron 20.0%
!!! TTTTCTACTTTTTCTTATAG+TGG - chr7_3:223735-223754 Msa1087500:CDS 20.0%
!!! CTGTTTTTTTGTCAAATTTC+AGG - chr7_3:220571-220590 Msa1087500:CDS 25.0%
!! TTTTGTCAAATTTCAGGATA+TGG - chr7_3:220577-220596 Msa1087500:CDS 25.0%
! TTTGTCAAATTTCAGGATAT+GGG - chr7_3:220578-220597 Msa1087500:CDS 25.0%
! GAATTGGTATATGTAAAGAA+AGG + chr7_3:220660-220679 None:intergenic 25.0%
!!! ACAGTTTAATTTTGATACAC+TGG - chr7_3:220717-220736 Msa1087500:intron 25.0%
!! TCTAAAGTCAAACATTAGAT+TGG + chr7_3:220779-220798 None:intergenic 25.0%
!! CAAGAAAATGTAACTTTTCT+AGG - chr7_3:221073-221092 Msa1087500:intron 25.0%
!!! AATGATATTTTTATAGGAGC+TGG - chr7_3:221120-221139 Msa1087500:intron 25.0%
! AGAGTTAACTCAAAATTTGA+CGG + chr7_3:221281-221300 None:intergenic 25.0%
!! GTTAGAACCTTTTTAAACAT+AGG - chr7_3:221438-221457 Msa1087500:intron 25.0%
!! TAGAACCTTTTTAAACATAG+GGG - chr7_3:221440-221459 Msa1087500:intron 25.0%
! TGATTAGATACTAGTGTAAA+AGG + chr7_3:221622-221641 None:intergenic 25.0%
!!! CATTTTTTCACACCAATTTT+AGG - chr7_3:221650-221669 Msa1087500:intron 25.0%
! CAATATACCATTCCTAAAAT+TGG + chr7_3:221665-221684 None:intergenic 25.0%
! TTAGGAATGGTATATTGATA+AGG - chr7_3:221668-221687 Msa1087500:intron 25.0%
! ATAAACAAACCAGACATAAT+AGG - chr7_3:221699-221718 Msa1087500:intron 25.0%
! TTGGTTCAATAAAACAGAAA+GGG + chr7_3:222049-222068 None:intergenic 25.0%
!! TTTGGTTCAATAAAACAGAA+AGG + chr7_3:222050-222069 None:intergenic 25.0%
!! TGTTGTTTGAAAATAATGAC+AGG - chr7_3:222390-222409 Msa1087500:intron 25.0%
! ACCTAAAGTGAGAAATTATT+TGG - chr7_3:222449-222468 Msa1087500:intron 25.0%
! CCTAAAGTGAGAAATTATTT+GGG - chr7_3:222450-222469 Msa1087500:intron 25.0%
!! ATTATTTGGGATTGGAAATA+CGG - chr7_3:222463-222482 Msa1087500:intron 25.0%
! GAAATCAAAATTTACTGGAA+GGG + chr7_3:222519-222538 None:intergenic 25.0%
! AGAAATCAAAATTTACTGGA+AGG + chr7_3:222520-222539 None:intergenic 25.0%
! GATGAGAAATCAAAATTTAC+TGG + chr7_3:222524-222543 None:intergenic 25.0%
!! TGGCATCTAAATAAAGTTTT+CGG + chr7_3:222682-222701 None:intergenic 25.0%
! TATGTGTGTGTAATTTACTT+TGG + chr7_3:222702-222721 None:intergenic 25.0%
! AAAATTGAAACTAACTGCAA+GGG + chr7_3:222833-222852 None:intergenic 25.0%
!! AAAGCACTAAAAAGAGAAAT+TGG - chr7_3:222867-222886 Msa1087500:intron 25.0%
! AAGCACTAAAAAGAGAAATT+GGG - chr7_3:222868-222887 Msa1087500:intron 25.0%
! GTGCTGAATATTTAAATTTG+TGG + chr7_3:222948-222967 None:intergenic 25.0%
! AACTATAAATAAAACACCCT+TGG + chr7_3:223091-223110 None:intergenic 25.0%
!!! GATGTTTTTTCTTGAAATGA+GGG + chr7_3:223146-223165 None:intergenic 25.0%
!!! TGATGTTTTTTCTTGAAATG+AGG + chr7_3:223147-223166 None:intergenic 25.0%
! ATTGTAGATAATTTATCTCC+TGG - chr7_3:223204-223223 Msa1087500:intron 25.0%
! TTGTAGATAATTTATCTCCT+GGG - chr7_3:223205-223224 Msa1087500:intron 25.0%
! ATTTAGATAAAAATACCGGT+AGG + chr7_3:223709-223728 None:intergenic 25.0%
! TTTCAGTTTAAAGTGGGAAT+TGG + chr7_3:220538-220557 None:intergenic 30.0%
ACAGAGAAAGAAGAACTTAA+GGG + chr7_3:220632-220651 None:intergenic 30.0%
TACAGAGAAAGAAGAACTTA+AGG + chr7_3:220633-220652 None:intergenic 30.0%
AAAGGGGAAAACAATTGAAT+TGG + chr7_3:220676-220695 None:intergenic 30.0%
CCATTAATCAATTATAACGG+TGG + chr7_3:220837-220856 None:intergenic 30.0%
CCACCGTTATAATTGATTAA+TGG - chr7_3:220834-220853 Msa1087500:CDS 30.0%
GTAAAAAATCTTTACACCGA+CGG - chr7_3:220858-220877 Msa1087500:CDS 30.0%
! TGAAGAAATTTTGCTGACAT+TGG + chr7_3:221255-221274 None:intergenic 30.0%
! AGAACCTTTTTAAACATAGG+GGG - chr7_3:221441-221460 Msa1087500:intron 30.0%
TGAAACCTAAAATAGAGGTA+AGG - chr7_3:221470-221489 Msa1087500:intron 30.0%
GAAACCTAAAATAGAGGTAA+GGG - chr7_3:221471-221490 Msa1087500:intron 30.0%
TGAAGGCTAAATTGTATGTT+TGG + chr7_3:221498-221517 None:intergenic 30.0%
!! TTTCACACCAATTTTAGGAA+TGG - chr7_3:221655-221674 Msa1087500:intron 30.0%
!! TTATGTCTGGTTTGTTTATC+CGG + chr7_3:221698-221717 None:intergenic 30.0%
AAAGAAATGCCTATTATGTC+TGG + chr7_3:221711-221730 None:intergenic 30.0%
TAATCATTAGACGAAAGCAA+GGG + chr7_3:221772-221791 None:intergenic 30.0%
ATAATCATTAGACGAAAGCA+AGG + chr7_3:221773-221792 None:intergenic 30.0%
ATGCATTTGTTCTTGATTGT+TGG - chr7_3:221924-221943 Msa1087500:intron 30.0%
TTAGCCTACATGTTATTGAT+TGG - chr7_3:221949-221968 Msa1087500:intron 30.0%
AATGCCAATCAATAACATGT+AGG + chr7_3:221956-221975 None:intergenic 30.0%
! TACATGTTATTGATTGGCAT+TGG - chr7_3:221955-221974 Msa1087500:intron 30.0%
ATTATCAACTTCCACATAGA+TGG + chr7_3:221995-222014 None:intergenic 30.0%
TATAACAATGTCGACAATTG+TGG + chr7_3:222303-222322 None:intergenic 30.0%
CCCAAATAATTTCTCACTTT+AGG + chr7_3:222453-222472 None:intergenic 30.0%
! AGTGAGAAATTATTTGGGAT+TGG - chr7_3:222455-222474 Msa1087500:intron 30.0%
! TTTGATTTCTCATCCAGTTA+TGG - chr7_3:222530-222549 Msa1087500:intron 30.0%
CAAAATTGAAACTAACTGCA+AGG + chr7_3:222834-222853 None:intergenic 30.0%
!! CTTGCAGTTAGTTTCAATTT+TGG - chr7_3:222832-222851 Msa1087500:intron 30.0%
TTAAATATTCAGCACATTGG+TGG - chr7_3:222953-222972 Msa1087500:intron 30.0%
! AAAAGCAAAGCAGATTTTGA+CGG - chr7_3:223002-223021 Msa1087500:intron 30.0%
TGTAGATAATTTATCTCCTG+GGG - chr7_3:223206-223225 Msa1087500:intron 30.0%
GGCATGAAATATCACTAAAA+GGG + chr7_3:223286-223305 None:intergenic 30.0%
AGGCATGAAATATCACTAAA+AGG + chr7_3:223287-223306 None:intergenic 30.0%
!! TCAATCACATCTGTTTCTTT+TGG + chr7_3:223568-223587 None:intergenic 30.0%
ACACTATAAAATGTCTGCAA+TGG + chr7_3:223617-223636 None:intergenic 30.0%
! AGAAAAGTATGCATTCTCTT+AGG - chr7_3:223680-223699 Msa1087500:CDS 30.0%
CGTCACAAGAAGTTAGTATA+TGG - chr7_3:220279-220298 Msa1087500:three_prime_UTR 35.0%
GTTGTGACTTATGTTGTTGT+TGG + chr7_3:220434-220453 None:intergenic 35.0%
ACTCAATCTCTCTAACAACT+TGG - chr7_3:220491-220510 Msa1087500:CDS 35.0%
GTTTAATTCATATACGCCGT+CGG + chr7_3:220877-220896 None:intergenic 35.0%
TGGCTTGAAACCTAAAATAG+AGG - chr7_3:221465-221484 Msa1087500:intron 35.0%
GGTATATTGATAAGGAGAAC+CGG - chr7_3:221676-221695 Msa1087500:intron 35.0%
CATAAACAATGAAAGGCAGA+AGG + chr7_3:221742-221761 None:intergenic 35.0%
TCTGCCTTTCATTGTTTATG+AGG - chr7_3:221742-221761 Msa1087500:intron 35.0%
CTGCCTTTCATTGTTTATGA+GGG - chr7_3:221743-221762 Msa1087500:intron 35.0%
TGCCTTTCATTGTTTATGAG+GGG - chr7_3:221744-221763 Msa1087500:intron 35.0%
!! TTATTGATTGGCATTGGCAT+TGG - chr7_3:221961-221980 Msa1087500:intron 35.0%
! AACTCTTTTACCCTAACATC+AGG - chr7_3:222105-222124 Msa1087500:intron 35.0%
TTTACCACATCCTGATGTTA+GGG + chr7_3:222118-222137 None:intergenic 35.0%
ATTTACCACATCCTGATGTT+AGG + chr7_3:222119-222138 None:intergenic 35.0%
! CGTAGTGGAATTTGAATCAA+TGG - chr7_3:222170-222189 Msa1087500:CDS 35.0%
!! TACAAAGCGTTGTCAAATAG+AGG - chr7_3:222215-222234 Msa1087500:intron 35.0%
! TTGTGGATTGAGGAAAATAG+CGG + chr7_3:222286-222305 None:intergenic 35.0%
TTGAAAATAATGACAGGCAG+TGG - chr7_3:222396-222415 Msa1087500:intron 35.0%
TAAGCTGAATGTACCATAAC+TGG + chr7_3:222546-222565 None:intergenic 35.0%
TGAGTTATGGGTAAAAGATC+TGG - chr7_3:222632-222651 Msa1087500:intron 35.0%
! ACCTATTTCTTTCAAGCAGT+TGG - chr7_3:222790-222809 Msa1087500:intron 35.0%
ACCAACTGCTTGAAAGAAAT+AGG + chr7_3:222794-222813 None:intergenic 35.0%
! GGCTACATTGTTGTTACTTA+AGG - chr7_3:223057-223076 Msa1087500:intron 35.0%
TACTTAAGGTTTGACATCCA+AGG - chr7_3:223071-223090 Msa1087500:intron 35.0%
ACTTAAGGTTTGACATCCAA+GGG - chr7_3:223072-223091 Msa1087500:intron 35.0%
TAGTTAATGATTTCCCTCAC+CGG - chr7_3:223106-223125 Msa1087500:intron 35.0%
! TTTTTCTTGAAATGAGGGTC+TGG + chr7_3:223141-223160 None:intergenic 35.0%
GTAGATAATTTATCTCCTGG+GGG - chr7_3:223207-223226 Msa1087500:intron 35.0%
AATCTCTTAAGTATTCTCGC+AGG + chr7_3:223307-223326 None:intergenic 35.0%
TGAAAAAGACAACCACAAGA+GGG + chr7_3:223336-223355 None:intergenic 35.0%
CACTGTCACACAATATAGAA+GGG + chr7_3:223454-223473 None:intergenic 35.0%
TCACTGTCACACAATATAGA+AGG + chr7_3:223455-223474 None:intergenic 35.0%
TCTATATTGTGTGACAGTGA+AGG - chr7_3:223455-223474 Msa1087500:intron 35.0%
ATGGTTATTAAGCAACCCTA+TGG - chr7_3:223478-223497 Msa1087500:intron 35.0%
TGGTTATTAAGCAACCCTAT+GGG - chr7_3:223479-223498 Msa1087500:intron 35.0%
ATAAAATGTCTGCAATGGAC+AGG + chr7_3:223612-223631 None:intergenic 35.0%
ATATGTTCAACATCAACCAC+AGG - chr7_3:223657-223676 Msa1087500:CDS 35.0%
TTGAAGAGAAAGAGGGGAAA+TGG - chr7_3:220215-220234 Msa1087500:three_prime_UTR 40.0%
TGAAGAGAAAGAGGGGAAAT+GGG - chr7_3:220216-220235 Msa1087500:three_prime_UTR 40.0%
!! GAAATGGGTTATTGCTTTGG+AGG - chr7_3:220231-220250 Msa1087500:three_prime_UTR 40.0%
GAAGAAGAAGAAGAAGAGAG+AGG + chr7_3:220360-220379 None:intergenic 40.0%
TACTTGGGAAATAGAGGAAG+AGG + chr7_3:220397-220416 None:intergenic 40.0%
! AGCTGTTACTTGGGAAATAG+AGG + chr7_3:220403-220422 None:intergenic 40.0%
! GTCTTGTTCAGCTGTTACTT+GGG + chr7_3:220412-220431 None:intergenic 40.0%
! TGCTGACATTGGTTACGTAA+GGG + chr7_3:221244-221263 None:intergenic 40.0%
! TTGCTGACATTGGTTACGTA+AGG + chr7_3:221245-221264 None:intergenic 40.0%
! TGGTCCCTTACCTCTATTTT+AGG + chr7_3:221478-221497 None:intergenic 40.0%
GCCTTTCATTGTTTATGAGG+GGG - chr7_3:221745-221764 Msa1087500:intron 40.0%
ACCCCCTCATAAACAATGAA+AGG + chr7_3:221749-221768 None:intergenic 40.0%
TTTACCCTAACATCAGGATG+TGG - chr7_3:222111-222130 Msa1087500:intron 40.0%
TCAGGATGTGGTAAATGAGT+AGG - chr7_3:222123-222142 Msa1087500:intron 40.0%
AAATAGCAGCTATAGCGTAG+TGG - chr7_3:222155-222174 Msa1087500:CDS 40.0%
!! AAAGCGTTGTCAAATAGAGG+CGG - chr7_3:222218-222237 Msa1087500:intron 40.0%
! ATGTCGACAATTGTGGATTG+AGG + chr7_3:222296-222315 None:intergenic 40.0%
!! GAGTAAGTGTGCTGTTTATC+AGG + chr7_3:222357-222376 None:intergenic 40.0%
AAATAATGACAGGCAGTGGT+AGG - chr7_3:222400-222419 Msa1087500:intron 40.0%
ACTTTGATTCCATGTGCAGA+TGG - chr7_3:222599-222618 Msa1087500:intron 40.0%
!! CAGTTGGTAGAATCATATCC+TGG - chr7_3:222806-222825 Msa1087500:intron 40.0%
! TCACTGTCCTAATGGTTTGT+TGG - chr7_3:222893-222912 Msa1087500:intron 40.0%
AATCCAGCCAACAAACCATT+AGG + chr7_3:222903-222922 None:intergenic 40.0%
!! AATGGTTTGTTGGCTGGATT+TGG - chr7_3:222903-222922 Msa1087500:intron 40.0%
ATTTGTGGGATTGTGACTAC+AGG + chr7_3:222933-222952 None:intergenic 40.0%
! AAGAGTTTTGCAGAAGCCTT+TGG - chr7_3:223173-223192 Msa1087500:intron 40.0%
TCTACAATAGCACCAACCAA+AGG + chr7_3:223192-223211 None:intergenic 40.0%
! GAGATTCATTTTCCCTCTTG+TGG - chr7_3:223321-223340 Msa1087500:intron 40.0%
GTGAAAAAGACAACCACAAG+AGG + chr7_3:223337-223356 None:intergenic 40.0%
!! CTTGTGGTTGTCTTTTTCAC+AGG - chr7_3:223337-223356 Msa1087500:intron 40.0%
GGTATTTGTACAGTCTGATG+TGG - chr7_3:223358-223377 Msa1087500:intron 40.0%
GTGCATCAACTTCATCAAAC+TGG + chr7_3:223409-223428 None:intergenic 40.0%
TATTGTGTGACAGTGAAGGA+TGG - chr7_3:223459-223478 Msa1087500:intron 40.0%
GGTTATTAAGCAACCCTATG+GGG - chr7_3:223480-223499 Msa1087500:intron 40.0%
TTCTGCATGAATCTCTCTCT+CGG + chr7_3:223513-223532 None:intergenic 40.0%
GAGATTCATGCAGAATTCGA+AGG - chr7_3:223518-223537 Msa1087500:intron 40.0%
ATTCATGCAGAATTCGAAGG+AGG - chr7_3:223521-223540 Msa1087500:CDS 40.0%
TTCATGCAGAATTCGAAGGA+GGG - chr7_3:223522-223541 Msa1087500:CDS 40.0%
AAGGAGGGAAAATCTATCGA+AGG - chr7_3:223537-223556 Msa1087500:CDS 40.0%
! GAATGCATACTTTTCTCCTG+TGG + chr7_3:223676-223695 None:intergenic 40.0%
!! GGGGAAATGGGTTATTGCTT+TGG - chr7_3:220228-220247 Msa1087500:three_prime_UTR 45.0%
!! TGGGTTATTGCTTTGGAGGT+TGG - chr7_3:220235-220254 Msa1087500:three_prime_UTR 45.0%
GGTGAAAATGAGAGTGAGAG+TGG + chr7_3:220330-220349 None:intergenic 45.0%
GAAGAAGAGAGAGGACGAAA+GGG + chr7_3:220351-220370 None:intergenic 45.0%
AGAAGAAGAGAGAGGACGAA+AGG + chr7_3:220352-220371 None:intergenic 45.0%
GAAATAGAGGAAGAGGAGAG+TGG + chr7_3:220390-220409 None:intergenic 45.0%
!! GGTCTTGTTCAGCTGTTACT+TGG + chr7_3:220413-220432 None:intergenic 45.0%
ACGCACATGGATGACTTATG+GGG + chr7_3:221326-221345 None:intergenic 45.0%
GACGCACATGGATGACTTAT+GGG + chr7_3:221327-221346 None:intergenic 45.0%
AGACGCACATGGATGACTTA+TGG + chr7_3:221328-221347 None:intergenic 45.0%
GTGTTTAACAGAGACGCACA+TGG + chr7_3:221339-221358 None:intergenic 45.0%
CCAGCCCCCTATGTTTAAAA+AGG + chr7_3:221448-221467 None:intergenic 45.0%
! CCTTTTTAAACATAGGGGGC+TGG - chr7_3:221445-221464 Msa1087500:intron 45.0%
CATCCAATATCCACCATGAG+TGG + chr7_3:221859-221878 None:intergenic 45.0%
!! CTCATGGTGGATATTGGATG+TGG - chr7_3:221859-221878 Msa1087500:intron 45.0%
! TGGCTTGGATACCATCTATG+TGG - chr7_3:221981-222000 Msa1087500:intron 45.0%
GCAGTGGTAGGTTTCTTATG+TGG - chr7_3:222412-222431 Msa1087500:intron 45.0%
TGGGATTGGAAATACGGCAA+AGG - chr7_3:222469-222488 Msa1087500:intron 45.0%
GGGATTGGAAATACGGCAAA+GGG - chr7_3:222470-222489 Msa1087500:intron 45.0%
TGGAAATACGGCAAAGGGTA+AGG - chr7_3:222475-222494 Msa1087500:intron 45.0%
! ATGGGTAAAAGATCTGGCTC+TGG - chr7_3:222638-222657 Msa1087500:intron 45.0%
!! ATTGGGTGTCACTGTCCTAA+TGG - chr7_3:222885-222904 Msa1087500:intron 45.0%
!! TGTCCTAATGGTTTGTTGGC+TGG - chr7_3:222897-222916 Msa1087500:intron 45.0%
! GTTTTGCAGAAGCCTTTGGT+TGG - chr7_3:223177-223196 Msa1087500:intron 45.0%
TAATTTATCTCCTGGGGGAC+AGG - chr7_3:223212-223231 Msa1087500:intron 45.0%
AGAAAATATACCTGTCCCCC+AGG + chr7_3:223225-223244 None:intergenic 45.0%
ACAGTCTGATGTGGTTGAAG+TGG - chr7_3:223367-223386 Msa1087500:intron 45.0%
TAAGCAACCCTATGGGGATT+AGG - chr7_3:223486-223505 Msa1087500:intron 45.0%
CATTCTCTTAGGATGCCTAC+CGG - chr7_3:223691-223710 Msa1087500:CDS 45.0%
!! ATTTATTTATTTGTAATTTA+AGG - chr7_3:223776-223795 Msa1087500:CDS 5.0%
! CTCTGTCTAGAATGTCCACG+TGG - chr7_3:221297-221316 Msa1087500:intron 50.0%
CGCACATGGATGACTTATGG+GGG + chr7_3:221325-221344 None:intergenic 50.0%
GTGCGTCTCTGTTAAACACG+TGG - chr7_3:221340-221359 Msa1087500:intron 50.0%
!! CTGCCACTCATGGTGGATAT+TGG - chr7_3:221853-221872 Msa1087500:intron 50.0%
!! GATTGGCATTGGCATTGGCT+TGG - chr7_3:221966-221985 Msa1087500:intron 50.0%
TGGTGAAGCGTGCTGAGTTA+TGG - chr7_3:222619-222638 Msa1087500:intron 50.0%
GGTGAAGCGTGCTGAGTTAT+GGG - chr7_3:222620-222639 Msa1087500:intron 50.0%
GAAACTAACTGCAAGGGTCC+AGG + chr7_3:222827-222846 None:intergenic 50.0%
GACTGCAGGCGATCACTTAT+TGG - chr7_3:223036-223055 Msa1087500:intron 50.0%
TCTCGGTCCTAATCCCCATA+GGG + chr7_3:223496-223515 None:intergenic 50.0%
!! TTCCAGTCTGGTACTGGTGC+AGG + chr7_3:221811-221830 None:intergenic 55.0%
ACCAGTACCAGACTGGAACC+AGG - chr7_3:221813-221832 Msa1087500:intron 55.0%
ACCTGGTTCCAGTCTGGTAC+TGG + chr7_3:221817-221836 None:intergenic 55.0%
GCAAACACCTGGTTCCAGTC+TGG + chr7_3:221823-221842 None:intergenic 55.0%
CACGCTTCACCATCTGCACA+TGG + chr7_3:222611-222630 None:intergenic 55.0%
CTCTCGGTCCTAATCCCCAT+AGG + chr7_3:223497-223516 None:intergenic 55.0%
!! TGACTTATGGGGGTGCCACG+TGG + chr7_3:221315-221334 None:intergenic 60.0%
CTCCTGCACCAGTACCAGAC+TGG - chr7_3:221806-221825 Msa1087500:intron 60.0%
GAGCAGGGTCTGCAAACACC+TGG + chr7_3:221834-221853 None:intergenic 60.0%
AGACCCTGCTCTGCCACTCA+TGG - chr7_3:221843-221862 Msa1087500:intron 60.0%
CCACCATGAGTGGCAGAGCA+GGG + chr7_3:221849-221868 None:intergenic 60.0%
TCCACCATGAGTGGCAGAGC+AGG + chr7_3:221850-221869 None:intergenic 60.0%
CTGGACACTGCATCCGGTGA+GGG + chr7_3:223122-223141 None:intergenic 60.0%
TCTGGACACTGCATCCGGTG+AGG + chr7_3:223123-223142 None:intergenic 60.0%
GAGGGTCTGGACACTGCATC+CGG + chr7_3:223128-223147 None:intergenic 60.0%
CCCTGCTCTGCCACTCATGG+TGG - chr7_3:221846-221865 Msa1087500:intron 65.0%
CGGCGTGAGACTGTGACTGC+AGG - chr7_3:223022-223041 Msa1087500:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 220214 223817 220214 ID=Msa1087500;Name=Msa1087500
chr7_3 mRNA 220214 223817 220214 ID=Msa1087500-mRNA-1;Parent=Msa1087500;Name=Msa1087500-mRNA-1;_AED=0.40;_eAED=0.40;_QI=20|1|1|1|1|1|8|234|316
chr7_3 exon 220214 220672 220214 ID=Msa1087500-mRNA-1:exon:127;Parent=Msa1087500-mRNA-1
chr7_3 exon 220798 220896 220798 ID=Msa1087500-mRNA-1:exon:126;Parent=Msa1087500-mRNA-1
chr7_3 exon 221178 221262 221178 ID=Msa1087500-mRNA-1:exon:125;Parent=Msa1087500-mRNA-1
chr7_3 exon 221364 221413 221364 ID=Msa1087500-mRNA-1:exon:124;Parent=Msa1087500-mRNA-1
chr7_3 exon 221540 221619 221540 ID=Msa1087500-mRNA-1:exon:123;Parent=Msa1087500-mRNA-1
chr7_3 exon 222151 222226 222151 ID=Msa1087500-mRNA-1:exon:122;Parent=Msa1087500-mRNA-1
chr7_3 exon 223382 223438 223382 ID=Msa1087500-mRNA-1:exon:121;Parent=Msa1087500-mRNA-1
chr7_3 exon 223519 223817 223519 ID=Msa1087500-mRNA-1:exon:120;Parent=Msa1087500-mRNA-1
chr7_3 five_prime_UTR 223798 223817 223798 ID=Msa1087500-mRNA-1:five_prime_utr;Parent=Msa1087500-mRNA-1
chr7_3 CDS 223519 223797 223519 ID=Msa1087500-mRNA-1:cds;Parent=Msa1087500-mRNA-1
chr7_3 CDS 223382 223438 223382 ID=Msa1087500-mRNA-1:cds;Parent=Msa1087500-mRNA-1
chr7_3 CDS 222151 222226 222151 ID=Msa1087500-mRNA-1:cds;Parent=Msa1087500-mRNA-1
chr7_3 CDS 221540 221619 221540 ID=Msa1087500-mRNA-1:cds;Parent=Msa1087500-mRNA-1
chr7_3 CDS 221364 221413 221364 ID=Msa1087500-mRNA-1:cds;Parent=Msa1087500-mRNA-1
chr7_3 CDS 221178 221262 221178 ID=Msa1087500-mRNA-1:cds;Parent=Msa1087500-mRNA-1
chr7_3 CDS 220798 220896 220798 ID=Msa1087500-mRNA-1:cds;Parent=Msa1087500-mRNA-1
chr7_3 CDS 220448 220672 220448 ID=Msa1087500-mRNA-1:cds;Parent=Msa1087500-mRNA-1
chr7_3 three_prime_UTR 220214 220447 220214 ID=Msa1087500-mRNA-1:three_prime_utr;Parent=Msa1087500-mRNA-1
Gene Sequence

>Msa1087500

ATGGGTTATTGCTTTGGAGGTTGGCGTATATTACAGATACAGAGTCGTCACAAGAAGTTAGTATATGGCATTGATACTGCTTTAGTAATGTTACCACTCTCACTCTCATTTTCACCCTTTCGTCCTCTCTCTTCTTCTTCTTCTTCTTCTCTTCCACTCTCCTCTTCCTCTATTTCCCAAGTAACAGCTGAACAAGACCAACAACAACATAAGTCACAACGAAAAAGCTCACAACTTGTCGCATTAGAATATGCTGAACTCAATCTCTCTAACAACTTGGATATGGGTCATGTCAGAATCAGACAACATGTCAATCCCTTAAGTTCTTCTTTCTCTACTCCTGCACCAGTACCAGACTGGAACCAGGTGTTTGCAGACCCTGCTCTGCCACTCATGGTGGATATTGGATGTGGCAGTGGTAGGTTTCTTATGTGGCTTGCAAAAAGAACACCTAAAGTGAGAAATTATTTGGGATTGGAAATACGGCAAAGGATGGTGAAGCGTGCTGAGTTATGGGTAAAAGATCTGGCTCTGGATAACATACATTTCTTGTTTGCAAATGCACCTATTTCTTTCAAGCAGTTGGTAGAATCATATCCTGGACCCTTGCAGTTAGTTTCAATTTTGTGTCCAGACCCTCATTTCAAGAAAAAACATCATAAAAGAAGAGTTTTGCAGAAGCCTTTGGTTGGTGCTATTGTAGATAATTTATCTCCTGGGGGACAGGTATTTGTACAGTCTGATGTGGTTGAAGTGGCACTTGACATGAAAAACCAGTTTGATGAAGTTGATGCACTTAGTCACACAGATGCTTTGAACCCTTCTATATTGTGTGACAGTGAAGGATGGTTATTAAGCAACCCTATGGGGATTAGGACCGAGAGAGAGATTCATGCAGAATTCGAAGGAGGGAAAATCTATCGAAGGTTGTACCAAAAGAAACAGATGTGA

Protein sequence

>Msa1087500

MGYCFGGWRILQIQSRHKKLVYGIDTALVMLPLSLSFSPFRPLSSSSSSSLPLSSSSISQVTAEQDQQQHKSQRKSSQLVALEYAELNLSNNLDMGHVRIRQHVNPLSSSFSTPAPVPDWNQVFADPALPLMVDIGCGSGRFLMWLAKRTPKVRNYLGLEIRQRMVKRAELWVKDLALDNIHFLFANAPISFKQLVESYPGPLQLVSILCPDPHFKKKHHKRRVLQKPLVGAIVDNLSPGGQVFVQSDVVEVALDMKNQFDEVDALSHTDALNPSILCDSEGWLLSNPMGIRTEREIHAEFEGGKIYRRLYQKKQM*