AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0486200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0486200 MtrunA17_Chr1g0213971 97.131 244 5 1 2 245 3 244 1.50e-172 474
Msa0486200 MtrunA17_Chr7g0270991 63.590 195 68 1 50 244 68 259 2.97e-88 262
Msa0486200 MtrunA17_Chr1g0193711 61.905 210 72 3 40 244 43 249 1.79e-86 257
Msa0486200 MtrunA17_Chr3g0104751 61.957 184 59 3 68 244 24 203 1.28e-72 220
Msa0486200 MtrunA17_Chr3g0113441 55.288 208 68 5 56 242 28 231 3.16e-68 210
Msa0486200 MtrunA17_Chr3g0145501 61.404 171 55 3 79 242 13 179 4.32e-68 208
Msa0486200 MtrunA17_Chr7g0274841 59.649 171 58 3 79 242 5 171 1.06e-66 204
Msa0486200 MtrunA17_Chr4g0038431 60.920 174 57 3 76 242 2 171 1.38e-66 204
Msa0486200 MtrunA17_Chr8g0374621 57.558 172 62 2 79 242 5 173 2.03e-61 196
Msa0486200 MtrunA17_Chr4g0037281 50.000 192 87 2 59 243 27 216 1.68e-58 185
Msa0486200 MtrunA17_Chr4g0045321 54.913 173 67 2 79 243 5 174 3.10e-58 188
Msa0486200 MtrunA17_Chr8g0353571 52.688 186 79 3 63 242 3 185 8.36e-58 182
Msa0486200 MtrunA17_Chr7g0260441 56.322 174 64 3 80 245 9 178 5.57e-55 186
Msa0486200 MtrunA17_Chr2g0321111 54.167 144 61 3 94 236 470 609 1.44e-42 152
Msa0486200 MtrunA17_Chr7g0266721 49.306 144 68 4 94 236 18 157 2.83e-39 134
Msa0486200 MtrunA17_Chr3g0138061 45.930 172 79 4 80 242 12 178 6.23e-37 137
Msa0486200 MtrunA17_Chr8g0351571 47.586 145 71 4 94 237 9 149 1.97e-36 126
Msa0486200 MtrunA17_Chr3g0122871 56.667 120 24 3 138 230 1 119 1.47e-34 120
Msa0486200 MtrunA17_Chr1g0149061 47.333 150 65 4 80 220 9 153 1.12e-32 125
Msa0486200 MtrunA17_Chr5g0401141 47.222 144 71 4 95 237 354 493 5.35e-31 120
Msa0486200 MtrunA17_Chr2g0288371 43.972 141 70 7 95 231 22 157 2.45e-21 92.4
Msa0486200 MtrunA17_Chr6g0484281 39.869 153 77 6 94 236 9 156 2.04e-19 87.0
Msa0486200 MtrunA17_Chr8g0357591 39.216 153 78 6 94 236 9 156 4.33e-18 83.2
Msa0486200 MtrunA17_Chr2g0305071 27.869 244 114 10 64 245 44 287 2.04e-16 77.0
Msa0486200 MtrunA17_Chr1g0199071 35.811 148 72 7 95 236 89 219 2.68e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0486200 AT5G13120.2 83.237 173 29 0 73 245 81 253 1.29e-111 321
Msa0486200 AT5G13120.1 83.237 173 29 0 73 245 85 257 1.95e-111 321
Msa0486200 AT3G62030.1 66.321 193 61 2 53 244 69 258 9.58e-90 266
Msa0486200 AT3G62030.3 65.625 192 63 1 53 244 69 257 1.58e-89 265
Msa0486200 AT3G62030.2 66.321 193 61 2 53 244 122 311 7.80e-89 265
Msa0486200 AT2G29960.1 62.712 177 55 3 75 244 29 201 5.32e-72 219
Msa0486200 AT2G29960.3 62.712 177 55 3 75 244 29 201 5.32e-72 219
Msa0486200 AT5G58710.1 62.147 177 56 3 75 244 32 204 2.48e-71 217
Msa0486200 AT2G21130.1 62.573 171 53 3 79 242 6 172 2.35e-70 213
Msa0486200 AT2G16600.1 61.988 171 54 3 79 242 6 172 3.43e-69 211
Msa0486200 AT4G38740.1 60.819 171 56 3 79 242 5 171 6.12e-68 207
Msa0486200 AT3G56070.1 59.064 171 59 3 79 242 5 171 1.90e-66 204
Msa0486200 AT3G56070.2 59.064 171 59 3 79 242 5 171 1.90e-66 204
Msa0486200 AT3G55920.1 59.322 177 59 4 76 244 57 228 3.10e-65 202
Msa0486200 AT4G34870.1 60.234 171 57 3 79 242 5 171 9.51e-65 199
Msa0486200 AT2G29960.2 59.322 177 51 4 75 244 29 191 6.85e-64 197
Msa0486200 AT4G34960.1 52.128 188 80 2 63 243 32 216 2.77e-59 187
Msa0486200 AT2G15790.1 57.225 173 63 2 79 243 5 174 9.62e-59 190
Msa0486200 AT2G16600.2 57.317 164 51 3 79 242 6 150 2.10e-58 182
Msa0486200 AT2G38730.1 55.621 169 66 3 80 242 34 199 9.84e-58 182
Msa0486200 AT3G63400.2 59.412 170 57 3 80 241 9 174 5.74e-57 186
Msa0486200 AT3G63400.3 59.412 170 57 3 80 241 9 174 2.21e-55 186
Msa0486200 AT3G63400.4 59.412 170 57 3 80 241 9 174 2.21e-55 186
Msa0486200 AT3G63400.1 59.412 170 57 3 80 241 9 174 2.21e-55 186
Msa0486200 AT4G34960.2 53.846 143 56 2 63 198 32 171 6.40e-45 149
Msa0486200 AT3G44600.1 54.167 144 61 3 94 236 484 623 1.31e-42 153
Msa0486200 AT2G36130.1 47.917 144 70 4 94 236 18 157 1.04e-39 135
Msa0486200 AT1G01940.1 46.897 145 72 4 94 237 9 149 1.67e-37 129
Msa0486200 AT3G22920.1 45.714 175 72 8 79 242 5 167 1.04e-31 116
Msa0486200 AT5G67530.1 46.853 143 71 4 95 236 353 491 1.28e-31 122
Msa0486200 AT4G32420.1 41.808 177 89 4 75 242 4 175 4.16e-29 115
Msa0486200 AT4G32420.5 41.808 177 89 4 75 242 4 175 4.16e-29 115
Msa0486200 AT4G32420.3 41.808 177 89 4 75 242 4 175 4.16e-29 115
Msa0486200 AT4G32420.6 41.808 177 89 4 75 242 4 175 4.16e-29 115
Msa0486200 AT4G32420.4 43.226 155 75 3 75 220 4 154 1.43e-27 111
Msa0486200 AT4G33060.1 44.681 141 69 7 95 231 22 157 2.30e-24 101
Msa0486200 AT1G53720.2 40.789 152 77 5 94 236 9 156 1.41e-22 95.1
Msa0486200 AT1G53720.1 40.789 152 77 5 94 236 9 156 1.48e-21 93.2

Find 114 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGATTGTCACCTTCTTT+AGG 0.241303 3_4:-3971942 None:intergenic
GATCAGAGGCATGTTGTATT+TGG 0.249985 3_4:+3971850 Msa0486200:CDS
TTCATAAATCTAAATCAGTT+TGG 0.255873 3_4:+3972119 Msa0486200:three_prime_UTR
AAATGAGTTTAAGTTATTCT+AGG 0.267655 3_4:-3972198 None:intergenic
ACTGATTGTCACCTTCTTTA+GGG 0.273487 3_4:-3971941 None:intergenic
TCATAAATCTAAATCAGTTT+GGG 0.286580 3_4:+3972120 Msa0486200:three_prime_UTR
TGGAAGGCATGGACATTGTT+AGG 0.309018 3_4:+3971881 Msa0486200:CDS
GTTATAAGGTCTATAATAAT+GGG 0.334365 3_4:+3970672 Msa0486200:five_prime_UTR
CTAAAAGAAGCATCTCCTTC+GGG 0.337132 3_4:+3970995 Msa0486200:CDS
TCGCGCGTGCGTTAAAATTC+AGG 0.342844 3_4:-3970752 None:intergenic
CAAGGAGGAGACTTTGATAA+AGG 0.345816 3_4:+3971327 Msa0486200:CDS
AAAGTGAGGGCAGTGGAAAA+TGG 0.351843 3_4:+3971075 Msa0486200:CDS
TGTTGTATTTGGCCAAGTTT+TGG 0.352436 3_4:+3971861 Msa0486200:CDS
TGTTATAAGGTCTATAATAA+TGG 0.352864 3_4:+3970671 Msa0486200:five_prime_UTR
GTGGATTGAGTAGTGTTATA+AGG 0.355070 3_4:+3970658 Msa0486200:five_prime_UTR
ATCCTTCCTTCCTTCTTGTT+CGG 0.366675 3_4:+3970776 Msa0486200:five_prime_UTR
TCCACCGGTGAGAAGGGCTT+TGG 0.377046 3_4:+3971258 Msa0486200:CDS
GTGTGGAGAAAGGGAGTTAA+TGG 0.380638 3_4:+3972352 Msa0486200:three_prime_UTR
ATCTATCTATCGCAGGGAAC+TGG 0.385423 3_4:+3971415 Msa0486200:intron
AACAAAACATGTCAAGCAAT+TGG 0.393584 3_4:-3971979 None:intergenic
CTTCCAACCAGCTTCCCAAC+TGG 0.403156 3_4:-3971174 None:intergenic
GCATCTCCTTCGGGGTGGTT+AGG 0.405416 3_4:+3971004 Msa0486200:CDS
ACTGGAGGCAAAAGTATCTA+TGG 0.406648 3_4:+3971433 Msa0486200:CDS
GTTCTAGTGGGTGTGGAGAA+AGG 0.407477 3_4:+3972342 Msa0486200:three_prime_UTR
TTATTTCTATCTCTATGAAA+TGG 0.409659 3_4:+3970610 None:intergenic
GGAAGTTCTCAACAGTTTGC+GGG 0.417261 3_4:-3971227 None:intergenic
TGCCCTTTCCACCGGTGAGA+AGG 0.418329 3_4:+3971251 Msa0486200:CDS
TTGAGTTGAATAGATAGATT+AGG 0.424055 3_4:+3970718 Msa0486200:five_prime_UTR
TTCTTTGTTTCTTGCTGCTG+AGG 0.427286 3_4:+3972014 Msa0486200:three_prime_UTR
GTATTCTTTGATGTTAGTAT+TGG 0.430298 3_4:+3971147 Msa0486200:CDS
AACTGACTCCCATTGGTGTT+GGG 0.430322 3_4:-3971703 None:intergenic
GCCCTTCTCACCGGTGGAAA+GGG 0.431866 3_4:-3971253 None:intergenic
GGTGGTTAGGTCCCGAGGTG+TGG 0.434983 3_4:+3971017 Msa0486200:CDS
TGCTTAATCAGCAGTTGAGT+GGG 0.435663 3_4:+3972220 Msa0486200:three_prime_UTR
AGGATTGTGATAGGACTCTT+TGG 0.436041 3_4:+3971195 Msa0486200:CDS
TTCTAGTGGGTGTGGAGAAA+GGG 0.438917 3_4:+3972343 Msa0486200:three_prime_UTR
CCTAAAAGAAGCATCTCCTT+CGG 0.444911 3_4:+3970994 Msa0486200:CDS
GGGTTTGATAATTCATCCAT+TGG 0.447035 3_4:+3970693 Msa0486200:five_prime_UTR
TTGTGTTGAAAGACTGGTAA+AGG 0.449776 3_4:+3972308 Msa0486200:three_prime_UTR
GTGGTTAGGTCCCGAGGTGT+GGG 0.453738 3_4:+3971018 Msa0486200:CDS
ACATTGGCAGACGCCGTGGC+TGG 0.454530 3_4:+3971828 Msa0486200:intron
TGGAAATCCAGTTGGGAAGC+TGG 0.456366 3_4:+3971167 Msa0486200:CDS
TGTTAGGTTGATTGAATCAC+AGG 0.461699 3_4:+3971897 Msa0486200:CDS
AGCCCTTCTCACCGGTGGAA+AGG 0.480339 3_4:-3971254 None:intergenic
TATACATTGTGTTGAAAGAC+TGG 0.481340 3_4:+3972302 Msa0486200:three_prime_UTR
GGTTTGATAATTCATCCATT+GGG 0.481595 3_4:+3970694 Msa0486200:five_prime_UTR
AACTTCCGTGCCCTTTCCAC+CGG 0.482955 3_4:+3971243 Msa0486200:CDS
GCCCTTTCCACCGGTGAGAA+GGG 0.484178 3_4:+3971252 Msa0486200:CDS
TGTCCATGCCTTCCAAAACT+TGG 0.486542 3_4:-3971873 None:intergenic
ATCAAGGACTTCATGATTCA+AGG 0.494593 3_4:+3971309 Msa0486200:CDS
TTTCTAATATCAATGTCTCT+TGG 0.498054 3_4:-3972175 None:intergenic
CATGCTAACAGCTCCTGGTC+CGG 0.506814 3_4:-3971668 None:intergenic
ATGCTGGTCCCAACACCAAT+GGG 0.515041 3_4:+3971695 Msa0486200:CDS
CACCTTCCATCGCGTCATCA+AGG 0.515078 3_4:+3971293 Msa0486200:CDS
GTTAGTATTGGAAATCCAGT+TGG 0.515418 3_4:+3971159 Msa0486200:CDS
CCAGTGTCTCATACCGGACC+AGG 0.515423 3_4:+3971655 Msa0486200:intron
GGGGTTGAGGTGTGCACAGT+TGG 0.519233 3_4:+3972392 Msa0486200:intron
CTGATTGTCACCTTCTTTAG+GGG 0.526723 3_4:-3971940 None:intergenic
CGGAAGTTCTCAACAGTTTG+CGG 0.530427 3_4:-3971228 None:intergenic
TTTGCCATGCTAACAGCTCC+TGG 0.534982 3_4:-3971673 None:intergenic
TGTGTTGAAAGACTGGTAAA+GGG 0.536640 3_4:+3972309 Msa0486200:three_prime_UTR
GCTGTTAGCATGGCAAATGC+TGG 0.538859 3_4:+3971679 Msa0486200:CDS
TAGTTTCACACCCACACCTC+GGG 0.541866 3_4:-3971028 None:intergenic
TTCGGTGTTTAACCAACCGA+TGG 0.542282 3_4:+3970794 Msa0486200:exon
AGCAATTGTTCTAGTGGGTG+TGG 0.544753 3_4:+3972335 Msa0486200:three_prime_UTR
AATGCTGGTCCCAACACCAA+TGG 0.549301 3_4:+3971694 Msa0486200:CDS
AGACGCCGTGGCTGGATCAG+AGG 0.549918 3_4:+3971836 Msa0486200:intron
TTCGGGGTGGTTAGGTCCCG+AGG 0.551753 3_4:+3971012 Msa0486200:CDS
CAGTTGGGAAGCTGGTTGGA+AGG 0.554098 3_4:+3971175 Msa0486200:CDS
TTAGTATTGGAAATCCAGTT+GGG 0.555401 3_4:+3971160 Msa0486200:CDS
CTTGATGACGCGATGGAAGG+TGG 0.555450 3_4:-3971292 None:intergenic
CTGGTTGGAAGGATTGTGAT+AGG 0.560590 3_4:+3971186 Msa0486200:CDS
AAACTGACTCCCATTGGTGT+TGG 0.561474 3_4:-3971704 None:intergenic
TGGTGATCGTCCCCTAAAGA+AGG 0.561937 3_4:+3971930 Msa0486200:CDS
TTGCTTAATCAGCAGTTGAG+TGG 0.562436 3_4:+3972219 Msa0486200:three_prime_UTR
AATCCAGTTGGGAAGCTGGT+TGG 0.562899 3_4:+3971171 Msa0486200:CDS
CATAAATCTAAATCAGTTTG+GGG 0.574747 3_4:+3972121 Msa0486200:three_prime_UTR
GGGGTGAGCAATTGTTCTAG+TGG 0.575296 3_4:+3972329 Msa0486200:three_prime_UTR
ATGCAGCAGCAGCCATCGGT+TGG 0.576471 3_4:-3970806 None:intergenic
GCCAAAGCCCTTCTCACCGG+TGG 0.577439 3_4:-3971259 None:intergenic
TCTCACCGGTGGAAAGGGCA+CGG 0.594226 3_4:-3971248 None:intergenic
GTAGCCAAAGCCCTTCTCAC+CGG 0.594772 3_4:-3971262 None:intergenic
CACCGAACAAGAAGGAAGGA+AGG 0.597774 3_4:-3970778 None:intergenic
GGAAAATGGTAGTAGTTCAG+AGG 0.600784 3_4:+3971089 Msa0486200:CDS
TATATTACCAGTGAGAAAAG+TGG 0.601545 3_4:-3970849 None:intergenic
CGGACCAGGAGCTGTTAGCA+TGG 0.603520 3_4:+3971669 Msa0486200:CDS
TCTATTCAACTCAAACCCAA+TGG 0.605314 3_4:-3970709 None:intergenic
GGGTGAGCAATTGTTCTAGT+GGG 0.606774 3_4:+3972330 Msa0486200:three_prime_UTR
TGGTTAAACACCGAACAAGA+AGG 0.608263 3_4:-3970786 None:intergenic
ACAAGTGAAAGTGAGGGCAG+TGG 0.614839 3_4:+3971068 Msa0486200:CDS
TTGAATGCAGCAGCAGCCAT+CGG 0.616311 3_4:-3970810 None:intergenic
CTAGTTTCACACCCACACCT+CGG 0.617486 3_4:-3971029 None:intergenic
TACGACGACAAGTGAAAGTG+AGG 0.618754 3_4:+3971061 Msa0486200:CDS
CATGACATTGGCAGACGCCG+TGG 0.622061 3_4:+3971824 Msa0486200:intron
GTCCTTGATGACGCGATGGA+AGG 0.624852 3_4:-3971295 None:intergenic
TGAAGTCCTTGATGACGCGA+TGG 0.626809 3_4:-3971299 None:intergenic
ATATCTCCAGTGTCTCATAC+CGG 0.627003 3_4:+3971649 Msa0486200:intron
GATGACGCGATGGAAGGTGG+AGG 0.631465 3_4:-3971289 None:intergenic
GTGGGTGTGAAACTAGCAGT+AGG 0.631670 3_4:+3971036 Msa0486200:CDS
TTATAAGGTCTATAATAATG+GGG 0.634734 3_4:+3970673 Msa0486200:five_prime_UTR
TATCTATCGCAGGGAACTGG+AGG 0.635120 3_4:+3971418 Msa0486200:intron
GCTTAATCAGCAGTTGAGTG+GGG 0.643968 3_4:+3972221 Msa0486200:three_prime_UTR
CGCGTGCGTTAAAATTCAGG+AGG 0.653719 3_4:-3970749 None:intergenic
GAATCACAGGAGACTGATCG+TGG 0.655138 3_4:+3971910 Msa0486200:CDS
TAAACACCGAACAAGAAGGA+AGG 0.656755 3_4:-3970782 None:intergenic
TCGGGACCTAACCACCCCGA+AGG 0.668691 3_4:-3971010 None:intergenic
ACATGCCTCTGATCCAGCCA+CGG 0.671333 3_4:-3971841 None:intergenic
TAAAAGAAGCATCTCCTTCG+GGG 0.673971 3_4:+3970996 Msa0486200:CDS
AAGGTGACAATCAGTGACTG+TGG 0.689468 3_4:+3971949 Msa0486200:CDS
ATTACCAGTGAGAAAAGTGG+CGG 0.690058 3_4:-3970846 None:intergenic
AAGAAGCATCTCCTTCGGGG+TGG 0.705303 3_4:+3970999 Msa0486200:CDS
ACGACGACAAGTGAAAGTGA+GGG 0.708194 3_4:+3971062 Msa0486200:CDS
GTGTTGAAAGACTGGTAAAG+GGG 0.712385 3_4:+3972310 Msa0486200:three_prime_UTR
AAGGACTTCATGATTCAAGG+AGG 0.745105 3_4:+3971312 Msa0486200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTATTTTGATTAG+TGG + chr3_4:3970639-3970658 Msa0486200:five_prime_UTR 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - chr3_4:3970893-3970912 None:intergenic 15.0%
!!! ATAAGTTGATGAATAAAAAA+AGG - chr3_4:3971389-3971408 None:intergenic 15.0%
!!! ATTTTAGTTTAGTTTAGTTT+AGG + chr3_4:3971573-3971592 Msa0486200:intron 15.0%
!!! TTTTGTTTTATTTTGATTAG+TGG + chr3_4:3970639-3970658 Msa0486200:five_prime_UTR 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - chr3_4:3970893-3970912 None:intergenic 15.0%
!!! ATAAGTTGATGAATAAAAAA+AGG - chr3_4:3971389-3971408 None:intergenic 15.0%
!!! ATTTTAGTTTAGTTTAGTTT+AGG + chr3_4:3971573-3971592 Msa0486200:intron 15.0%
!! TGTTATAAGGTCTATAATAA+TGG + chr3_4:3970671-3970690 Msa0486200:five_prime_UTR 20.0%
!! GTTATAAGGTCTATAATAAT+GGG + chr3_4:3970672-3970691 Msa0486200:five_prime_UTR 20.0%
!! TTATAAGGTCTATAATAATG+GGG + chr3_4:3970673-3970692 Msa0486200:five_prime_UTR 20.0%
!! TATTAATTGATTGATTGTCT+TGG + chr3_4:3970926-3970945 Msa0486200:intron 20.0%
!! AATAAAATAAACACAGTGAA+GGG - chr3_4:3971556-3971575 None:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - chr3_4:3971557-3971576 None:intergenic 20.0%
!!! TACTTTTAATTCTCTCTTAT+CGG + chr3_4:3971760-3971779 Msa0486200:intron 20.0%
!!! AATTTTTTGTTTTGTAAGCA+TGG + chr3_4:3972061-3972080 Msa0486200:three_prime_UTR 20.0%
!!! ATTTTTTGTTTTGTAAGCAT+GGG + chr3_4:3972062-3972081 Msa0486200:three_prime_UTR 20.0%
!! TTCATAAATCTAAATCAGTT+TGG + chr3_4:3972119-3972138 Msa0486200:three_prime_UTR 20.0%
!! TCATAAATCTAAATCAGTTT+GGG + chr3_4:3972120-3972139 Msa0486200:three_prime_UTR 20.0%
!!! AAATGAGTTTAAGTTATTCT+AGG - chr3_4:3972201-3972220 None:intergenic 20.0%
!! TGTTATAAGGTCTATAATAA+TGG + chr3_4:3970671-3970690 Msa0486200:five_prime_UTR 20.0%
!! GTTATAAGGTCTATAATAAT+GGG + chr3_4:3970672-3970691 Msa0486200:five_prime_UTR 20.0%
!! TTATAAGGTCTATAATAATG+GGG + chr3_4:3970673-3970692 Msa0486200:five_prime_UTR 20.0%
!! TATTAATTGATTGATTGTCT+TGG + chr3_4:3970926-3970945 Msa0486200:intron 20.0%
!! AATAAAATAAACACAGTGAA+GGG - chr3_4:3971556-3971575 None:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - chr3_4:3971557-3971576 None:intergenic 20.0%
!!! TACTTTTAATTCTCTCTTAT+CGG + chr3_4:3971760-3971779 Msa0486200:intron 20.0%
!!! AATTTTTTGTTTTGTAAGCA+TGG + chr3_4:3972061-3972080 Msa0486200:three_prime_UTR 20.0%
!!! ATTTTTTGTTTTGTAAGCAT+GGG + chr3_4:3972062-3972081 Msa0486200:three_prime_UTR 20.0%
!! TTCATAAATCTAAATCAGTT+TGG + chr3_4:3972119-3972138 Msa0486200:three_prime_UTR 20.0%
!! TCATAAATCTAAATCAGTTT+GGG + chr3_4:3972120-3972139 Msa0486200:three_prime_UTR 20.0%
!!! AAATGAGTTTAAGTTATTCT+AGG - chr3_4:3972201-3972220 None:intergenic 20.0%
!!! TTGAGTTGAATAGATAGATT+AGG + chr3_4:3970718-3970737 Msa0486200:five_prime_UTR 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + chr3_4:3971147-3971166 Msa0486200:CDS 25.0%
!! GTTGATGAATAAAAAAAGGA+AGG - chr3_4:3971385-3971404 None:intergenic 25.0%
! ATAAAATAAACACAGTGAAG+GGG - chr3_4:3971555-3971574 None:intergenic 25.0%
!!! TGACATGTTTTGTTTTCTTA+TGG + chr3_4:3971988-3972007 Msa0486200:exon 25.0%
! AAAACAAAAAATTGAGAGAG+TGG - chr3_4:3972054-3972073 None:intergenic 25.0%
! CATAAATCTAAATCAGTTTG+GGG + chr3_4:3972121-3972140 Msa0486200:three_prime_UTR 25.0%
! TTTCTAATATCAATGTCTCT+TGG - chr3_4:3972178-3972197 None:intergenic 25.0%
!!! TTGAGTTGAATAGATAGATT+AGG + chr3_4:3970718-3970737 Msa0486200:five_prime_UTR 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + chr3_4:3971147-3971166 Msa0486200:CDS 25.0%
!! GTTGATGAATAAAAAAAGGA+AGG - chr3_4:3971385-3971404 None:intergenic 25.0%
! ATAAAATAAACACAGTGAAG+GGG - chr3_4:3971555-3971574 None:intergenic 25.0%
!!! TGACATGTTTTGTTTTCTTA+TGG + chr3_4:3971988-3972007 Msa0486200:exon 25.0%
! AAAACAAAAAATTGAGAGAG+TGG - chr3_4:3972054-3972073 None:intergenic 25.0%
! CATAAATCTAAATCAGTTTG+GGG + chr3_4:3972121-3972140 Msa0486200:three_prime_UTR 25.0%
! TTTCTAATATCAATGTCTCT+TGG - chr3_4:3972178-3972197 None:intergenic 25.0%
! GGTTTGATAATTCATCCATT+GGG + chr3_4:3970694-3970713 Msa0486200:five_prime_UTR 30.0%
TATATTACCAGTGAGAAAAG+TGG - chr3_4:3970852-3970871 None:intergenic 30.0%
AATTGATTGATTGTCTTGGT+TGG + chr3_4:3970930-3970949 Msa0486200:intron 30.0%
ATTGATTGATTGTCTTGGTT+GGG + chr3_4:3970931-3970950 Msa0486200:intron 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + chr3_4:3971160-3971179 Msa0486200:CDS 30.0%
TAAAATAAACACAGTGAAGG+GGG - chr3_4:3971554-3971573 None:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + chr3_4:3971812-3971831 Msa0486200:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - chr3_4:3971982-3972001 None:intergenic 30.0%
TATACATTGTGTTGAAAGAC+TGG + chr3_4:3972302-3972321 Msa0486200:three_prime_UTR 30.0%
ATGGTGAAGGACTATATATA+AGG + chr3_4:3972371-3972390 Msa0486200:intron 30.0%
TGGTGAAGGACTATATATAA+GGG + chr3_4:3972372-3972391 Msa0486200:intron 30.0%
! GGTTTGATAATTCATCCATT+GGG + chr3_4:3970694-3970713 Msa0486200:five_prime_UTR 30.0%
TATATTACCAGTGAGAAAAG+TGG - chr3_4:3970852-3970871 None:intergenic 30.0%
AATTGATTGATTGTCTTGGT+TGG + chr3_4:3970930-3970949 Msa0486200:intron 30.0%
ATTGATTGATTGTCTTGGTT+GGG + chr3_4:3970931-3970950 Msa0486200:intron 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + chr3_4:3971160-3971179 Msa0486200:CDS 30.0%
TAAAATAAACACAGTGAAGG+GGG - chr3_4:3971554-3971573 None:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + chr3_4:3971812-3971831 Msa0486200:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - chr3_4:3971982-3972001 None:intergenic 30.0%
TATACATTGTGTTGAAAGAC+TGG + chr3_4:3972302-3972321 Msa0486200:three_prime_UTR 30.0%
ATGGTGAAGGACTATATATA+AGG + chr3_4:3972371-3972390 Msa0486200:intron 30.0%
TGGTGAAGGACTATATATAA+GGG + chr3_4:3972372-3972391 Msa0486200:intron 30.0%
! GTGGATTGAGTAGTGTTATA+AGG + chr3_4:3970658-3970677 Msa0486200:five_prime_UTR 35.0%
! GGGTTTGATAATTCATCCAT+TGG + chr3_4:3970693-3970712 Msa0486200:five_prime_UTR 35.0%
TCTATTCAACTCAAACCCAA+TGG - chr3_4:3970712-3970731 None:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGAAT+AGG - chr3_4:3970985-3971004 None:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + chr3_4:3971159-3971178 Msa0486200:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + chr3_4:3971309-3971328 Msa0486200:CDS 35.0%
TCTATCTATCTATCTATCGC+AGG + chr3_4:3971408-3971427 Msa0486200:intron 35.0%
CTATCTATCTATCTATCGCA+GGG + chr3_4:3971409-3971428 Msa0486200:intron 35.0%
! TATGAAAAACTGACTCCCAT+TGG - chr3_4:3971713-3971732 None:intergenic 35.0%
! GTTTTTCATATGCACTGTCA+AGG + chr3_4:3971723-3971742 Msa0486200:CDS 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + chr3_4:3971861-3971880 Msa0486200:CDS 35.0%
!! TGTTAGGTTGATTGAATCAC+AGG + chr3_4:3971897-3971916 Msa0486200:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - chr3_4:3971944-3971963 None:intergenic 35.0%
TTGTGTTGAAAGACTGGTAA+AGG + chr3_4:3972308-3972327 Msa0486200:three_prime_UTR 35.0%
TGTGTTGAAAGACTGGTAAA+GGG + chr3_4:3972309-3972328 Msa0486200:three_prime_UTR 35.0%
GGTGAAGGACTATATATAAG+GGG + chr3_4:3972373-3972392 Msa0486200:intron 35.0%
! GTGGATTGAGTAGTGTTATA+AGG + chr3_4:3970658-3970677 Msa0486200:five_prime_UTR 35.0%
! GGGTTTGATAATTCATCCAT+TGG + chr3_4:3970693-3970712 Msa0486200:five_prime_UTR 35.0%
TCTATTCAACTCAAACCCAA+TGG - chr3_4:3970712-3970731 None:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGAAT+AGG - chr3_4:3970985-3971004 None:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + chr3_4:3971159-3971178 Msa0486200:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + chr3_4:3971309-3971328 Msa0486200:CDS 35.0%
TCTATCTATCTATCTATCGC+AGG + chr3_4:3971408-3971427 Msa0486200:intron 35.0%
CTATCTATCTATCTATCGCA+GGG + chr3_4:3971409-3971428 Msa0486200:intron 35.0%
! TATGAAAAACTGACTCCCAT+TGG - chr3_4:3971713-3971732 None:intergenic 35.0%
! GTTTTTCATATGCACTGTCA+AGG + chr3_4:3971723-3971742 Msa0486200:CDS 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + chr3_4:3971861-3971880 Msa0486200:CDS 35.0%
!! TGTTAGGTTGATTGAATCAC+AGG + chr3_4:3971897-3971916 Msa0486200:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - chr3_4:3971944-3971963 None:intergenic 35.0%
TTGTGTTGAAAGACTGGTAA+AGG + chr3_4:3972308-3972327 Msa0486200:three_prime_UTR 35.0%
TGTGTTGAAAGACTGGTAAA+GGG + chr3_4:3972309-3972328 Msa0486200:three_prime_UTR 35.0%
GGTGAAGGACTATATATAAG+GGG + chr3_4:3972373-3972392 Msa0486200:intron 35.0%
ATCCTTCCTTCCTTCTTGTT+CGG + chr3_4:3970776-3970795 Msa0486200:five_prime_UTR 40.0%
TAAACACCGAACAAGAAGGA+AGG - chr3_4:3970785-3970804 None:intergenic 40.0%
TGGTTAAACACCGAACAAGA+AGG - chr3_4:3970789-3970808 None:intergenic 40.0%
ATTACCAGTGAGAAAAGTGG+CGG - chr3_4:3970849-3970868 None:intergenic 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - chr3_4:3970991-3971010 None:intergenic 40.0%
! CGAAGGAGATGCTTCTTTTA+GGG - chr3_4:3970996-3971015 None:intergenic 40.0%
!! CCTAAAAGAAGCATCTCCTT+CGG + chr3_4:3970994-3971013 Msa0486200:CDS 40.0%
!! CTAAAAGAAGCATCTCCTTC+GGG + chr3_4:3970995-3971014 Msa0486200:CDS 40.0%
!! TAAAAGAAGCATCTCCTTCG+GGG + chr3_4:3970996-3971015 Msa0486200:CDS 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + chr3_4:3971089-3971108 Msa0486200:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + chr3_4:3971195-3971214 Msa0486200:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + chr3_4:3971312-3971331 Msa0486200:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + chr3_4:3971327-3971346 Msa0486200:CDS 40.0%
!! ACTGGAGGCAAAAGTATCTA+TGG + chr3_4:3971433-3971452 Msa0486200:CDS 40.0%
ATATCTCCAGTGTCTCATAC+CGG + chr3_4:3971649-3971668 Msa0486200:intron 40.0%
! GATCAGAGGCATGTTGTATT+TGG + chr3_4:3971850-3971869 Msa0486200:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + chr3_4:3971865-3971884 Msa0486200:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - chr3_4:3971943-3971962 None:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - chr3_4:3971945-3971964 None:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + chr3_4:3972014-3972033 Msa0486200:three_prime_UTR 40.0%
! TGTTTTGTAAGCATGGGTTC+TGG + chr3_4:3972068-3972087 Msa0486200:three_prime_UTR 40.0%
TTGCTTAATCAGCAGTTGAG+TGG + chr3_4:3972219-3972238 Msa0486200:three_prime_UTR 40.0%
TGCTTAATCAGCAGTTGAGT+GGG + chr3_4:3972220-3972239 Msa0486200:three_prime_UTR 40.0%
GTGTTGAAAGACTGGTAAAG+GGG + chr3_4:3972310-3972329 Msa0486200:three_prime_UTR 40.0%
AGAAAGGGAGTTAATGGTGA+AGG + chr3_4:3972358-3972377 Msa0486200:intron 40.0%
GGACTATATATAAGGGGTTG+AGG + chr3_4:3972379-3972398 Msa0486200:intron 40.0%
ATCCTTCCTTCCTTCTTGTT+CGG + chr3_4:3970776-3970795 Msa0486200:five_prime_UTR 40.0%
TAAACACCGAACAAGAAGGA+AGG - chr3_4:3970785-3970804 None:intergenic 40.0%
TGGTTAAACACCGAACAAGA+AGG - chr3_4:3970789-3970808 None:intergenic 40.0%
ATTACCAGTGAGAAAAGTGG+CGG - chr3_4:3970849-3970868 None:intergenic 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - chr3_4:3970991-3971010 None:intergenic 40.0%
! CGAAGGAGATGCTTCTTTTA+GGG - chr3_4:3970996-3971015 None:intergenic 40.0%
!! CCTAAAAGAAGCATCTCCTT+CGG + chr3_4:3970994-3971013 Msa0486200:CDS 40.0%
!! CTAAAAGAAGCATCTCCTTC+GGG + chr3_4:3970995-3971014 Msa0486200:CDS 40.0%
!! TAAAAGAAGCATCTCCTTCG+GGG + chr3_4:3970996-3971015 Msa0486200:CDS 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + chr3_4:3971089-3971108 Msa0486200:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + chr3_4:3971195-3971214 Msa0486200:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + chr3_4:3971312-3971331 Msa0486200:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + chr3_4:3971327-3971346 Msa0486200:CDS 40.0%
!! ACTGGAGGCAAAAGTATCTA+TGG + chr3_4:3971433-3971452 Msa0486200:CDS 40.0%
ATATCTCCAGTGTCTCATAC+CGG + chr3_4:3971649-3971668 Msa0486200:intron 40.0%
! GATCAGAGGCATGTTGTATT+TGG + chr3_4:3971850-3971869 Msa0486200:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + chr3_4:3971865-3971884 Msa0486200:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - chr3_4:3971943-3971962 None:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - chr3_4:3971945-3971964 None:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + chr3_4:3972014-3972033 Msa0486200:three_prime_UTR 40.0%
! TGTTTTGTAAGCATGGGTTC+TGG + chr3_4:3972068-3972087 Msa0486200:three_prime_UTR 40.0%
TTGCTTAATCAGCAGTTGAG+TGG + chr3_4:3972219-3972238 Msa0486200:three_prime_UTR 40.0%
TGCTTAATCAGCAGTTGAGT+GGG + chr3_4:3972220-3972239 Msa0486200:three_prime_UTR 40.0%
GTGTTGAAAGACTGGTAAAG+GGG + chr3_4:3972310-3972329 Msa0486200:three_prime_UTR 40.0%
AGAAAGGGAGTTAATGGTGA+AGG + chr3_4:3972358-3972377 Msa0486200:intron 40.0%
GGACTATATATAAGGGGTTG+AGG + chr3_4:3972379-3972398 Msa0486200:intron 40.0%
!! TTCGGTGTTTAACCAACCGA+TGG + chr3_4:3970794-3970813 Msa0486200:exon 45.0%
GATTGATTGTCTTGGTTGGG+TGG + chr3_4:3970934-3970953 Msa0486200:intron 45.0%
! CCGAAGGAGATGCTTCTTTT+AGG - chr3_4:3970997-3971016 None:intergenic 45.0%
TACGACGACAAGTGAAAGTG+AGG + chr3_4:3971061-3971080 Msa0486200:CDS 45.0%
ACGACGACAAGTGAAAGTGA+GGG + chr3_4:3971062-3971081 Msa0486200:CDS 45.0%
AAAGTGAGGGCAGTGGAAAA+TGG + chr3_4:3971075-3971094 Msa0486200:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + chr3_4:3971186-3971205 Msa0486200:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - chr3_4:3971230-3971249 None:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - chr3_4:3971231-3971250 None:intergenic 45.0%
ATCTATCTATCGCAGGGAAC+TGG + chr3_4:3971415-3971434 Msa0486200:intron 45.0%
! AACTGACTCCCATTGGTGTT+GGG - chr3_4:3971706-3971725 None:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - chr3_4:3971707-3971726 None:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - chr3_4:3971876-3971895 None:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + chr3_4:3971881-3971900 Msa0486200:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + chr3_4:3971949-3971968 Msa0486200:CDS 45.0%
GCTTAATCAGCAGTTGAGTG+GGG + chr3_4:3972221-3972240 Msa0486200:three_prime_UTR 45.0%
GGGTGAGCAATTGTTCTAGT+GGG + chr3_4:3972330-3972349 Msa0486200:three_prime_UTR 45.0%
! AGCAATTGTTCTAGTGGGTG+TGG + chr3_4:3972335-3972354 Msa0486200:three_prime_UTR 45.0%
! TTCTAGTGGGTGTGGAGAAA+GGG + chr3_4:3972343-3972362 Msa0486200:three_prime_UTR 45.0%
GTGTGGAGAAAGGGAGTTAA+TGG + chr3_4:3972352-3972371 Msa0486200:three_prime_UTR 45.0%
!! TTCGGTGTTTAACCAACCGA+TGG + chr3_4:3970794-3970813 Msa0486200:exon 45.0%
GATTGATTGTCTTGGTTGGG+TGG + chr3_4:3970934-3970953 Msa0486200:intron 45.0%
! CCGAAGGAGATGCTTCTTTT+AGG - chr3_4:3970997-3971016 None:intergenic 45.0%
TACGACGACAAGTGAAAGTG+AGG + chr3_4:3971061-3971080 Msa0486200:CDS 45.0%
ACGACGACAAGTGAAAGTGA+GGG + chr3_4:3971062-3971081 Msa0486200:CDS 45.0%
AAAGTGAGGGCAGTGGAAAA+TGG + chr3_4:3971075-3971094 Msa0486200:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + chr3_4:3971186-3971205 Msa0486200:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - chr3_4:3971230-3971249 None:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - chr3_4:3971231-3971250 None:intergenic 45.0%
ATCTATCTATCGCAGGGAAC+TGG + chr3_4:3971415-3971434 Msa0486200:intron 45.0%
! AACTGACTCCCATTGGTGTT+GGG - chr3_4:3971706-3971725 None:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - chr3_4:3971707-3971726 None:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - chr3_4:3971876-3971895 None:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + chr3_4:3971881-3971900 Msa0486200:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + chr3_4:3971949-3971968 Msa0486200:CDS 45.0%
GCTTAATCAGCAGTTGAGTG+GGG + chr3_4:3972221-3972240 Msa0486200:three_prime_UTR 45.0%
GGGTGAGCAATTGTTCTAGT+GGG + chr3_4:3972330-3972349 Msa0486200:three_prime_UTR 45.0%
! AGCAATTGTTCTAGTGGGTG+TGG + chr3_4:3972335-3972354 Msa0486200:three_prime_UTR 45.0%
! TTCTAGTGGGTGTGGAGAAA+GGG + chr3_4:3972343-3972362 Msa0486200:three_prime_UTR 45.0%
GTGTGGAGAAAGGGAGTTAA+TGG + chr3_4:3972352-3972371 Msa0486200:three_prime_UTR 45.0%
CGCGTGCGTTAAAATTCAGG+AGG - chr3_4:3970752-3970771 None:intergenic 50.0%
TCGCGCGTGCGTTAAAATTC+AGG - chr3_4:3970755-3970774 None:intergenic 50.0%
CACCGAACAAGAAGGAAGGA+AGG - chr3_4:3970781-3970800 None:intergenic 50.0%
TTGAATGCAGCAGCAGCCAT+CGG - chr3_4:3970813-3970832 None:intergenic 50.0%
!!! AACACCGCCACTTTTCTCAC+TGG + chr3_4:3970842-3970861 Msa0486200:CDS 50.0%
TAGTTTCACACCCACACCTC+GGG - chr3_4:3971031-3971050 None:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - chr3_4:3971032-3971051 None:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + chr3_4:3971036-3971055 Msa0486200:CDS 50.0%
ACAAGTGAAAGTGAGGGCAG+TGG + chr3_4:3971068-3971087 Msa0486200:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + chr3_4:3971167-3971186 Msa0486200:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + chr3_4:3971171-3971190 Msa0486200:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - chr3_4:3971302-3971321 None:intergenic 50.0%
TATCTATCGCAGGGAACTGG+AGG + chr3_4:3971418-3971437 Msa0486200:intron 50.0%
TTTGCCATGCTAACAGCTCC+TGG - chr3_4:3971676-3971695 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + chr3_4:3971679-3971698 Msa0486200:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + chr3_4:3971694-3971713 Msa0486200:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + chr3_4:3971695-3971714 Msa0486200:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + chr3_4:3971870-3971889 Msa0486200:CDS 50.0%
GAATCACAGGAGACTGATCG+TGG + chr3_4:3971910-3971929 Msa0486200:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + chr3_4:3971930-3971949 Msa0486200:CDS 50.0%
GGGGTGAGCAATTGTTCTAG+TGG + chr3_4:3972329-3972348 Msa0486200:three_prime_UTR 50.0%
! GTTCTAGTGGGTGTGGAGAA+AGG + chr3_4:3972342-3972361 Msa0486200:three_prime_UTR 50.0%
CGCGTGCGTTAAAATTCAGG+AGG - chr3_4:3970752-3970771 None:intergenic 50.0%
TCGCGCGTGCGTTAAAATTC+AGG - chr3_4:3970755-3970774 None:intergenic 50.0%
CACCGAACAAGAAGGAAGGA+AGG - chr3_4:3970781-3970800 None:intergenic 50.0%
TTGAATGCAGCAGCAGCCAT+CGG - chr3_4:3970813-3970832 None:intergenic 50.0%
!!! AACACCGCCACTTTTCTCAC+TGG + chr3_4:3970842-3970861 Msa0486200:CDS 50.0%
TAGTTTCACACCCACACCTC+GGG - chr3_4:3971031-3971050 None:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - chr3_4:3971032-3971051 None:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + chr3_4:3971036-3971055 Msa0486200:CDS 50.0%
ACAAGTGAAAGTGAGGGCAG+TGG + chr3_4:3971068-3971087 Msa0486200:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + chr3_4:3971167-3971186 Msa0486200:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + chr3_4:3971171-3971190 Msa0486200:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - chr3_4:3971302-3971321 None:intergenic 50.0%
TATCTATCGCAGGGAACTGG+AGG + chr3_4:3971418-3971437 Msa0486200:intron 50.0%
TTTGCCATGCTAACAGCTCC+TGG - chr3_4:3971676-3971695 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + chr3_4:3971679-3971698 Msa0486200:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + chr3_4:3971694-3971713 Msa0486200:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + chr3_4:3971695-3971714 Msa0486200:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + chr3_4:3971870-3971889 Msa0486200:CDS 50.0%
GAATCACAGGAGACTGATCG+TGG + chr3_4:3971910-3971929 Msa0486200:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + chr3_4:3971930-3971949 Msa0486200:CDS 50.0%
GGGGTGAGCAATTGTTCTAG+TGG + chr3_4:3972329-3972348 Msa0486200:three_prime_UTR 50.0%
! GTTCTAGTGGGTGTGGAGAA+AGG + chr3_4:3972342-3972361 Msa0486200:three_prime_UTR 50.0%
!! AAGAAGCATCTCCTTCGGGG+TGG + chr3_4:3970999-3971018 Msa0486200:CDS 55.0%
CTTCCAACCAGCTTCCCAAC+TGG - chr3_4:3971177-3971196 None:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + chr3_4:3971175-3971194 Msa0486200:CDS 55.0%
AACTTCCGTGCCCTTTCCAC+CGG + chr3_4:3971243-3971262 Msa0486200:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+CGG - chr3_4:3971265-3971284 None:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - chr3_4:3971295-3971314 None:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + chr3_4:3971293-3971312 Msa0486200:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - chr3_4:3971298-3971317 None:intergenic 55.0%
CATGCTAACAGCTCCTGGTC+CGG - chr3_4:3971671-3971690 None:intergenic 55.0%
ACATGCCTCTGATCCAGCCA+CGG - chr3_4:3971844-3971863 None:intergenic 55.0%
!! AAGAAGCATCTCCTTCGGGG+TGG + chr3_4:3970999-3971018 Msa0486200:CDS 55.0%
CTTCCAACCAGCTTCCCAAC+TGG - chr3_4:3971177-3971196 None:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + chr3_4:3971175-3971194 Msa0486200:CDS 55.0%
AACTTCCGTGCCCTTTCCAC+CGG + chr3_4:3971243-3971262 Msa0486200:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+CGG - chr3_4:3971265-3971284 None:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - chr3_4:3971295-3971314 None:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + chr3_4:3971293-3971312 Msa0486200:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - chr3_4:3971298-3971317 None:intergenic 55.0%
CATGCTAACAGCTCCTGGTC+CGG - chr3_4:3971671-3971690 None:intergenic 55.0%
ACATGCCTCTGATCCAGCCA+CGG - chr3_4:3971844-3971863 None:intergenic 55.0%
ATGCAGCAGCAGCCATCGGT+TGG - chr3_4:3970809-3970828 None:intergenic 60.0%
GCATCTCCTTCGGGGTGGTT+AGG + chr3_4:3971004-3971023 Msa0486200:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + chr3_4:3971018-3971037 Msa0486200:CDS 60.0%
TCTCACCGGTGGAAAGGGCA+CGG - chr3_4:3971251-3971270 None:intergenic 60.0%
TGCCCTTTCCACCGGTGAGA+AGG + chr3_4:3971251-3971270 Msa0486200:CDS 60.0%
GCCCTTTCCACCGGTGAGAA+GGG + chr3_4:3971252-3971271 Msa0486200:CDS 60.0%
GCCCTTCTCACCGGTGGAAA+GGG - chr3_4:3971256-3971275 None:intergenic 60.0%
AGCCCTTCTCACCGGTGGAA+AGG - chr3_4:3971257-3971276 None:intergenic 60.0%
TCCACCGGTGAGAAGGGCTT+TGG + chr3_4:3971258-3971277 Msa0486200:CDS 60.0%
GATGACGCGATGGAAGGTGG+AGG - chr3_4:3971292-3971311 None:intergenic 60.0%
CCTGGTCCGGTATGAGACAC+TGG - chr3_4:3971658-3971677 None:intergenic 60.0%
CCAGTGTCTCATACCGGACC+AGG + chr3_4:3971655-3971674 Msa0486200:intron 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + chr3_4:3971669-3971688 Msa0486200:CDS 60.0%
CATGACATTGGCAGACGCCG+TGG + chr3_4:3971824-3971843 Msa0486200:intron 60.0%
GGGGTTGAGGTGTGCACAGT+TGG + chr3_4:3972392-3972411 Msa0486200:intron 60.0%
ATGCAGCAGCAGCCATCGGT+TGG - chr3_4:3970809-3970828 None:intergenic 60.0%
GCATCTCCTTCGGGGTGGTT+AGG + chr3_4:3971004-3971023 Msa0486200:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + chr3_4:3971018-3971037 Msa0486200:CDS 60.0%
TCTCACCGGTGGAAAGGGCA+CGG - chr3_4:3971251-3971270 None:intergenic 60.0%
TGCCCTTTCCACCGGTGAGA+AGG + chr3_4:3971251-3971270 Msa0486200:CDS 60.0%
GCCCTTTCCACCGGTGAGAA+GGG + chr3_4:3971252-3971271 Msa0486200:CDS 60.0%
GCCCTTCTCACCGGTGGAAA+GGG - chr3_4:3971256-3971275 None:intergenic 60.0%
AGCCCTTCTCACCGGTGGAA+AGG - chr3_4:3971257-3971276 None:intergenic 60.0%
TCCACCGGTGAGAAGGGCTT+TGG + chr3_4:3971258-3971277 Msa0486200:CDS 60.0%
GATGACGCGATGGAAGGTGG+AGG - chr3_4:3971292-3971311 None:intergenic 60.0%
CCTGGTCCGGTATGAGACAC+TGG - chr3_4:3971658-3971677 None:intergenic 60.0%
CCAGTGTCTCATACCGGACC+AGG + chr3_4:3971655-3971674 Msa0486200:intron 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + chr3_4:3971669-3971688 Msa0486200:CDS 60.0%
CATGACATTGGCAGACGCCG+TGG + chr3_4:3971824-3971843 Msa0486200:intron 60.0%
GGGGTTGAGGTGTGCACAGT+TGG + chr3_4:3972392-3972411 Msa0486200:intron 60.0%
TCGGGACCTAACCACCCCGA+AGG - chr3_4:3971013-3971032 None:intergenic 65.0%
TTCGGGGTGGTTAGGTCCCG+AGG + chr3_4:3971012-3971031 Msa0486200:CDS 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + chr3_4:3971017-3971036 Msa0486200:CDS 65.0%
GCCAAAGCCCTTCTCACCGG+TGG - chr3_4:3971262-3971281 None:intergenic 65.0%
ACATTGGCAGACGCCGTGGC+TGG + chr3_4:3971828-3971847 Msa0486200:intron 65.0%
AGACGCCGTGGCTGGATCAG+AGG + chr3_4:3971836-3971855 Msa0486200:intron 65.0%
TCGGGACCTAACCACCCCGA+AGG - chr3_4:3971013-3971032 None:intergenic 65.0%
TTCGGGGTGGTTAGGTCCCG+AGG + chr3_4:3971012-3971031 Msa0486200:CDS 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + chr3_4:3971017-3971036 Msa0486200:CDS 65.0%
GCCAAAGCCCTTCTCACCGG+TGG - chr3_4:3971262-3971281 None:intergenic 65.0%
ACATTGGCAGACGCCGTGGC+TGG + chr3_4:3971828-3971847 Msa0486200:intron 65.0%
AGACGCCGTGGCTGGATCAG+AGG + chr3_4:3971836-3971855 Msa0486200:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 3970612 3972420 3970612 ID=Msa0486200;Name=Msa0486200
chr3_4 mRNA 3970612 3972420 3970612 ID=Msa0486200-mRNA-1;Parent=Msa0486200;Name=Msa0486200-mRNA-1;_AED=0.35;_eAED=0.35;_QI=201|1|1|1|0.8|0.66|6|409|245
chr3_4 exon 3970612 3970863 3970612 ID=Msa0486200-mRNA-1:exon:1515;Parent=Msa0486200-mRNA-1
chr3_4 exon 3970961 3971353 3970961 ID=Msa0486200-mRNA-1:exon:1516;Parent=Msa0486200-mRNA-1
chr3_4 exon 3971430 3971484 3971430 ID=Msa0486200-mRNA-1:exon:1517;Parent=Msa0486200-mRNA-1
chr3_4 exon 3971659 3971744 3971659 ID=Msa0486200-mRNA-1:exon:1518;Parent=Msa0486200-mRNA-1
chr3_4 exon 3971838 3972373 3971838 ID=Msa0486200-mRNA-1:exon:1519;Parent=Msa0486200-mRNA-1
chr3_4 exon 3972395 3972420 3972395 ID=Msa0486200-mRNA-1:exon:1520;Parent=Msa0486200-mRNA-1
chr3_4 five_prime_UTR 3970612 3970812 3970612 ID=Msa0486200-mRNA-1:five_prime_utr;Parent=Msa0486200-mRNA-1
chr3_4 CDS 3970813 3970863 3970813 ID=Msa0486200-mRNA-1:cds;Parent=Msa0486200-mRNA-1
chr3_4 CDS 3970961 3971353 3970961 ID=Msa0486200-mRNA-1:cds;Parent=Msa0486200-mRNA-1
chr3_4 CDS 3971430 3971484 3971430 ID=Msa0486200-mRNA-1:cds;Parent=Msa0486200-mRNA-1
chr3_4 CDS 3971659 3971744 3971659 ID=Msa0486200-mRNA-1:cds;Parent=Msa0486200-mRNA-1
chr3_4 CDS 3971838 3971990 3971838 ID=Msa0486200-mRNA-1:cds;Parent=Msa0486200-mRNA-1
chr3_4 three_prime_UTR 3971991 3972373 3971991 ID=Msa0486200-mRNA-1:three_prime_utr;Parent=Msa0486200-mRNA-1
chr3_4 three_prime_UTR 3972395 3972420 3972395 ID=Msa0486200-mRNA-1:three_prime_utr;Parent=Msa0486200-mRNA-1
Gene Sequence

>Msa0486200

ATGGCTGCTGCTGCATTCAATGTTACTACAACACCGCCACTTTTCTCACTGTCAAATGTTGTTGCTCTGAATCCTATTCCTAACCCTAAAAGAAGCATCTCCTTCGGGGTGGTTAGGTCCCGAGGTGTGGGTGTGAAACTAGCAGTAGGAGTACGACGACAAGTGAAAGTGAGGGCAGTGGAAAATGGTAGTAGTTCAGAGGAGAAAGTAATAGTACAGTCAAAAGTGACTCACAAAGTATTCTTTGATGTTAGTATTGGAAATCCAGTTGGGAAGCTGGTTGGAAGGATTGTGATAGGACTCTTTGGTGATGATGTCCCGCAAACTGTTGAGAACTTCCGTGCCCTTTCCACCGGTGAGAAGGGCTTTGGCTACAAGTCCTCCACCTTCCATCGCGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGATAAAGGAAATGGAACTGGAGGCAAAAGTATCTATGGTCGTACTTTCAAAGATGAGAATTTTAATCTGTCTCATACCGGACCAGGAGCTGTTAGCATGGCAAATGCTGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACGCCGTGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCACAGGAGACTGATCGTGGTGATCGTCCCCTAAAGAAGGTGACAATCAGTGACTGTGGCGAGCTTCCAATTGCTTGA
Protein sequence

>Msa0486200

MAAAAFNVTTTPPLFSLSNVVALNPIPNPKRSISFGVVRSRGVGVKLAVGVRRQVKVRAVENGSSSEEKVIVQSKVTHKVFFDVSIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTGEKGFGYKSSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGAVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPLKKVTISDCGELPIA*