Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0198530 | Msa0314230 | 0.804802 | 1.813612e-49 | -8.615850e-47 |
| Msa0239940 | Msa0314230 | 0.805150 | 1.533799e-49 | -8.615850e-47 |
| Msa0259270 | Msa0314230 | 0.816567 | 5.173980e-52 | -8.615850e-47 |
| Msa0267870 | Msa0314230 | 0.802060 | 6.711712e-49 | -8.615850e-47 |
| Msa0314230 | Msa0392200 | 0.804879 | 1.747438e-49 | -8.615850e-47 |
| Msa0314230 | Msa0419520 | 0.801312 | 9.553192e-49 | -8.615850e-47 |
| Msa0314230 | Msa0439890 | 0.820632 | 6.188909e-53 | -8.615850e-47 |
| Msa0314230 | Msa0474700 | 0.810366 | 1.194604e-50 | -8.615850e-47 |
| Msa0314230 | Msa0620330 | 0.810600 | 1.063359e-50 | -8.615850e-47 |
| Msa0314230 | Msa0744090 | 0.815692 | 8.114196e-52 | -8.615850e-47 |
| Msa0314230 | Msa0756930 | 0.804021 | 2.638096e-49 | -8.615850e-47 |
| Msa0314230 | Msa0781270 | 0.802140 | 6.462412e-49 | -8.615850e-47 |
| Msa0314230 | Msa0825270 | 0.802216 | 6.233589e-49 | -8.615850e-47 |
| Msa0314230 | Msa0825280 | 0.808250 | 3.396589e-50 | -8.615850e-47 |
| Msa0314230 | Msa0851470 | 0.808744 | 2.664593e-50 | -8.615850e-47 |
| Msa0314230 | Msa0856090 | 0.806590 | 7.641268e-50 | -8.615850e-47 |
| Msa0314230 | Msa0881580 | 0.815615 | 8.441879e-52 | -8.615850e-47 |
| Msa0314230 | Msa0899350 | 0.819480 | 1.136031e-52 | -8.615850e-47 |
| Msa0314230 | Msa0981430 | 0.809683 | 1.676016e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 12 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCTTTAAAGAGATGCTT+AGG | 0.420704 | 2_4:+9900268 | Msa0314230:three_prime_UTR |
| GAGAAAAGAATGGAGAGCTT+TGG | 0.444458 | 2_4:+9898637 | Msa0314230:CDS |
| AAAAGAATGGAGAGCTTTGG+AGG | 0.452020 | 2_4:+9898640 | Msa0314230:CDS |
| GAAGAAAGTTCCTGGTAGGA+TGG | 0.498355 | 2_4:+9900217 | Msa0314230:CDS |
| AAGAAAGTTCCTGGTAGGAT+GGG | 0.512739 | 2_4:+9900218 | Msa0314230:CDS |
| ACCACCTCGAATGGAGCCTA+TGG | 0.527800 | 2_4:+9898595 | None:intergenic |
| TGAAGAAGAAAGTTCCTGGT+AGG | 0.552225 | 2_4:+9900213 | Msa0314230:CDS |
| TAATTGATCCCCATCCTACC+AGG | 0.559440 | 2_4:-9900227 | None:intergenic |
| AGAAAGTTCCTGGTAGGATG+GGG | 0.573754 | 2_4:+9900219 | Msa0314230:CDS |
| GAGGTCGCAAGAGAAAAGAA+TGG | 0.581935 | 2_4:+9898627 | Msa0314230:CDS |
| GATGGGGATCAATTAAGAGA+AGG | 0.584478 | 2_4:+9900235 | Msa0314230:exon |
| CGACCTCCAAACAAAACCAT+AGG | 0.597762 | 2_4:-9898611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTAAGGTAAAATATA+AGG | - | chr2_4:9898763-9898782 | None:intergenic | 10.0% |
| !!! | TTATTGGTTTAAATAATTTA+AGG | - | chr2_4:9898775-9898794 | None:intergenic | 10.0% |
| !! | ATATTCAAGATTAAATTAAT+TGG | + | chr2_4:9899169-9899188 | Msa0314230:intron | 10.0% |
| !!! | TAAAATAAGTTTTATTTCAT+TGG | - | chr2_4:9899613-9899632 | None:intergenic | 10.0% |
| !!! | ATAATTTAAGGTAAAATATA+AGG | - | chr2_4:9898763-9898782 | None:intergenic | 10.0% |
| !!! | TTATTGGTTTAAATAATTTA+AGG | - | chr2_4:9898775-9898794 | None:intergenic | 10.0% |
| !! | ATATTCAAGATTAAATTAAT+TGG | + | chr2_4:9899169-9899188 | Msa0314230:intron | 10.0% |
| !!! | TAAAATAAGTTTTATTTCAT+TGG | - | chr2_4:9899613-9899632 | None:intergenic | 10.0% |
| !!! | ATTTCTAACAATTTTCTTAT+TGG | - | chr2_4:9898791-9898810 | None:intergenic | 15.0% |
| !!! | CAAATTTGATGATTTTAATT+AGG | + | chr2_4:9899026-9899045 | Msa0314230:intron | 15.0% |
| !!! | TTTTCTTGATATGAAATATT+TGG | + | chr2_4:9899100-9899119 | Msa0314230:intron | 15.0% |
| !! | AATATCACTTTATGAAAATA+GGG | + | chr2_4:9899330-9899349 | Msa0314230:intron | 15.0% |
| !! | ATTTAAGTCTGATATAATAT+AGG | + | chr2_4:9899388-9899407 | Msa0314230:intron | 15.0% |
| !! | AATTAACCCTAAAAATTATA+AGG | + | chr2_4:9899423-9899442 | Msa0314230:intron | 15.0% |
| !!! | CTTAAACCTTATAATTTTTA+GGG | - | chr2_4:9899432-9899451 | None:intergenic | 15.0% |
| !!! | TCTTAAACCTTATAATTTTT+AGG | - | chr2_4:9899433-9899452 | None:intergenic | 15.0% |
| !!! | AAAATTATAAGGTTTAAGAT+TGG | + | chr2_4:9899434-9899453 | Msa0314230:intron | 15.0% |
| !! | AACAATATCTATGTTTAAAT+TGG | + | chr2_4:9899571-9899590 | Msa0314230:intron | 15.0% |
| !! | AAAATGTTTGATATAAATTG+TGG | + | chr2_4:9899928-9899947 | Msa0314230:intron | 15.0% |
| !! | AAATGTTTGATATAAATTGT+GGG | + | chr2_4:9899929-9899948 | Msa0314230:intron | 15.0% |
| !! | TAATGCTTCAATATTAAAAT+CGG | + | chr2_4:9900150-9900169 | Msa0314230:intron | 15.0% |
| !!! | ATTTCTAACAATTTTCTTAT+TGG | - | chr2_4:9898791-9898810 | None:intergenic | 15.0% |
| !!! | CAAATTTGATGATTTTAATT+AGG | + | chr2_4:9899026-9899045 | Msa0314230:intron | 15.0% |
| !!! | TTTTCTTGATATGAAATATT+TGG | + | chr2_4:9899100-9899119 | Msa0314230:intron | 15.0% |
| !! | AATATCACTTTATGAAAATA+GGG | + | chr2_4:9899330-9899349 | Msa0314230:intron | 15.0% |
| !! | ATTTAAGTCTGATATAATAT+AGG | + | chr2_4:9899388-9899407 | Msa0314230:intron | 15.0% |
| !! | AATTAACCCTAAAAATTATA+AGG | + | chr2_4:9899423-9899442 | Msa0314230:intron | 15.0% |
| !!! | CTTAAACCTTATAATTTTTA+GGG | - | chr2_4:9899432-9899451 | None:intergenic | 15.0% |
| !!! | TCTTAAACCTTATAATTTTT+AGG | - | chr2_4:9899433-9899452 | None:intergenic | 15.0% |
| !!! | AAAATTATAAGGTTTAAGAT+TGG | + | chr2_4:9899434-9899453 | Msa0314230:intron | 15.0% |
| !! | AACAATATCTATGTTTAAAT+TGG | + | chr2_4:9899571-9899590 | Msa0314230:intron | 15.0% |
| !! | AAAATGTTTGATATAAATTG+TGG | + | chr2_4:9899928-9899947 | Msa0314230:intron | 15.0% |
| !! | AAATGTTTGATATAAATTGT+GGG | + | chr2_4:9899929-9899948 | Msa0314230:intron | 15.0% |
| !! | TAATGCTTCAATATTAAAAT+CGG | + | chr2_4:9900150-9900169 | Msa0314230:intron | 15.0% |
| !! | AAAAAAATTGAAATAAAGGG+AGG | - | chr2_4:9898696-9898715 | None:intergenic | 20.0% |
| !!! | TCCCTTTATTTCAATTTTTT+TGG | + | chr2_4:9898695-9898714 | Msa0314230:intron | 20.0% |
| !! | CCCAAAAAAATTGAAATAAA+GGG | - | chr2_4:9898699-9898718 | None:intergenic | 20.0% |
| !!! | CCCTTTATTTCAATTTTTTT+GGG | + | chr2_4:9898696-9898715 | Msa0314230:intron | 20.0% |
| !! | ACCCAAAAAAATTGAAATAA+AGG | - | chr2_4:9898700-9898719 | None:intergenic | 20.0% |
| !!! | AATCTTCCATTTCAATTTTT+AGG | + | chr2_4:9898721-9898740 | Msa0314230:intron | 20.0% |
| !! | CAATATCACTTTATGAAAAT+AGG | + | chr2_4:9899329-9899348 | Msa0314230:intron | 20.0% |
| !! | ATATCACTTTATGAAAATAG+GGG | + | chr2_4:9899331-9899350 | Msa0314230:intron | 20.0% |
| !! | AAAAAAATTGAAATAAAGGG+AGG | - | chr2_4:9898696-9898715 | None:intergenic | 20.0% |
| !!! | TCCCTTTATTTCAATTTTTT+TGG | + | chr2_4:9898695-9898714 | Msa0314230:intron | 20.0% |
| !! | CCCAAAAAAATTGAAATAAA+GGG | - | chr2_4:9898699-9898718 | None:intergenic | 20.0% |
| !!! | CCCTTTATTTCAATTTTTTT+GGG | + | chr2_4:9898696-9898715 | Msa0314230:intron | 20.0% |
| !! | ACCCAAAAAAATTGAAATAA+AGG | - | chr2_4:9898700-9898719 | None:intergenic | 20.0% |
| !!! | AATCTTCCATTTCAATTTTT+AGG | + | chr2_4:9898721-9898740 | Msa0314230:intron | 20.0% |
| !! | CAATATCACTTTATGAAAAT+AGG | + | chr2_4:9899329-9899348 | Msa0314230:intron | 20.0% |
| !! | ATATCACTTTATGAAAATAG+GGG | + | chr2_4:9899331-9899350 | Msa0314230:intron | 20.0% |
| ! | ATTAACGACAAAATAGATAG+TGG | - | chr2_4:9898936-9898955 | None:intergenic | 25.0% |
| ! | TTGATATGAAATATTTGGCA+CGG | + | chr2_4:9899105-9899124 | Msa0314230:intron | 25.0% |
| ! | GGACACAATTTAAAAACAAT+CGG | + | chr2_4:9899217-9899236 | Msa0314230:intron | 25.0% |
| !! | CAAAATTCGCTAATTTTATG+AGG | - | chr2_4:9899661-9899680 | None:intergenic | 25.0% |
| !! | CTCATAAAATTAGCGAATTT+TGG | + | chr2_4:9899659-9899678 | Msa0314230:intron | 25.0% |
| !!! | ACGGTGGATTTTTTTTTATA+GGG | - | chr2_4:9899692-9899711 | None:intergenic | 25.0% |
| !!! | AACGGTGGATTTTTTTTTAT+AGG | - | chr2_4:9899693-9899712 | None:intergenic | 25.0% |
| ! | ATTAAAACTGACCTTTAAAC+AGG | - | chr2_4:9900134-9900153 | None:intergenic | 25.0% |
| ! | ATTAACGACAAAATAGATAG+TGG | - | chr2_4:9898936-9898955 | None:intergenic | 25.0% |
| ! | TTGATATGAAATATTTGGCA+CGG | + | chr2_4:9899105-9899124 | Msa0314230:intron | 25.0% |
| ! | GGACACAATTTAAAAACAAT+CGG | + | chr2_4:9899217-9899236 | Msa0314230:intron | 25.0% |
| !! | CAAAATTCGCTAATTTTATG+AGG | - | chr2_4:9899661-9899680 | None:intergenic | 25.0% |
| !! | CTCATAAAATTAGCGAATTT+TGG | + | chr2_4:9899659-9899678 | Msa0314230:intron | 25.0% |
| !!! | ACGGTGGATTTTTTTTTATA+GGG | - | chr2_4:9899692-9899711 | None:intergenic | 25.0% |
| !!! | AACGGTGGATTTTTTTTTAT+AGG | - | chr2_4:9899693-9899712 | None:intergenic | 25.0% |
| ! | ATTAAAACTGACCTTTAAAC+AGG | - | chr2_4:9900134-9900153 | None:intergenic | 25.0% |
| CTTGCACCTAAAAATTGAAA+TGG | - | chr2_4:9898730-9898749 | None:intergenic | 30.0% | |
| TATGTCCATAACACATTGTT+TGG | - | chr2_4:9898892-9898911 | None:intergenic | 30.0% | |
| ! | TCAAATTTGCTTTCAAAGAG+AGG | - | chr2_4:9899015-9899034 | None:intergenic | 30.0% |
| CATATCAAGAAAATCAAGCT+TGG | - | chr2_4:9899093-9899112 | None:intergenic | 30.0% | |
| TGATATGAAATATTTGGCAC+GGG | + | chr2_4:9899106-9899125 | Msa0314230:intron | 30.0% | |
| TAATTGGATGCTAAAGTAAG+TGG | + | chr2_4:9899185-9899204 | Msa0314230:intron | 30.0% | |
| ACTCATACTTAAAGACATGA+AGG | + | chr2_4:9899252-9899271 | Msa0314230:intron | 30.0% | |
| ! | AAGCCACATTTAGAGTAAAA+AGG | + | chr2_4:9899293-9899312 | Msa0314230:intron | 30.0% |
| TAGGGTTAATTGTTCAAACT+AGG | - | chr2_4:9899414-9899433 | None:intergenic | 30.0% | |
| !!! | CGGTGGATTTTTTTTTATAG+GGG | - | chr2_4:9899691-9899710 | None:intergenic | 30.0% |
| AAATTAAGTAGGGACGAAAA+CGG | - | chr2_4:9899711-9899730 | None:intergenic | 30.0% | |
| GGTGACTGAAAAATTAAGTA+GGG | - | chr2_4:9899721-9899740 | None:intergenic | 30.0% | |
| ! | TCAACAGTTAGTTGACTTAA+CGG | - | chr2_4:9899757-9899776 | None:intergenic | 30.0% |
| ! | TATTTTACTGAATGCTGATG+TGG | - | chr2_4:9899834-9899853 | None:intergenic | 30.0% |
| TGGTTTCTAAATCAGATCTA+GGG | - | chr2_4:9899968-9899987 | None:intergenic | 30.0% | |
| TCTTCAAACACTTTGATCTA+GGG | - | chr2_4:9900058-9900077 | None:intergenic | 30.0% | |
| CTTGCACCTAAAAATTGAAA+TGG | - | chr2_4:9898730-9898749 | None:intergenic | 30.0% | |
| TATGTCCATAACACATTGTT+TGG | - | chr2_4:9898892-9898911 | None:intergenic | 30.0% | |
| ! | TCAAATTTGCTTTCAAAGAG+AGG | - | chr2_4:9899015-9899034 | None:intergenic | 30.0% |
| CATATCAAGAAAATCAAGCT+TGG | - | chr2_4:9899093-9899112 | None:intergenic | 30.0% | |
| TGATATGAAATATTTGGCAC+GGG | + | chr2_4:9899106-9899125 | Msa0314230:intron | 30.0% | |
| TAATTGGATGCTAAAGTAAG+TGG | + | chr2_4:9899185-9899204 | Msa0314230:intron | 30.0% | |
| ACTCATACTTAAAGACATGA+AGG | + | chr2_4:9899252-9899271 | Msa0314230:intron | 30.0% | |
| ! | AAGCCACATTTAGAGTAAAA+AGG | + | chr2_4:9899293-9899312 | Msa0314230:intron | 30.0% |
| TAGGGTTAATTGTTCAAACT+AGG | - | chr2_4:9899414-9899433 | None:intergenic | 30.0% | |
| !!! | CGGTGGATTTTTTTTTATAG+GGG | - | chr2_4:9899691-9899710 | None:intergenic | 30.0% |
| AAATTAAGTAGGGACGAAAA+CGG | - | chr2_4:9899711-9899730 | None:intergenic | 30.0% | |
| GGTGACTGAAAAATTAAGTA+GGG | - | chr2_4:9899721-9899740 | None:intergenic | 30.0% | |
| ! | TCAACAGTTAGTTGACTTAA+CGG | - | chr2_4:9899757-9899776 | None:intergenic | 30.0% |
| ! | TATTTTACTGAATGCTGATG+TGG | - | chr2_4:9899834-9899853 | None:intergenic | 30.0% |
| TGGTTTCTAAATCAGATCTA+GGG | - | chr2_4:9899968-9899987 | None:intergenic | 30.0% | |
| TCTTCAAACACTTTGATCTA+GGG | - | chr2_4:9900058-9900077 | None:intergenic | 30.0% | |
| ACATTCAAAGCAACTGAAGT+AGG | + | chr2_4:9898838-9898857 | Msa0314230:intron | 35.0% | |
| CATTCAAAGCAACTGAAGTA+GGG | + | chr2_4:9898839-9898858 | Msa0314230:intron | 35.0% | |
| ATTCAAAGCAACTGAAGTAG+GGG | + | chr2_4:9898840-9898859 | Msa0314230:intron | 35.0% | |
| ! | GAGCTATGGTGTCAATAATT+TGG | - | chr2_4:9898986-9899005 | None:intergenic | 35.0% |
| TGCTTTCAAAGAGAGGTTTA+TGG | - | chr2_4:9899008-9899027 | None:intergenic | 35.0% | |
| CATACTTAAAGACATGAAGG+TGG | + | chr2_4:9899255-9899274 | Msa0314230:intron | 35.0% | |
| ! | CGACCTTTTTACTCTAAATG+TGG | - | chr2_4:9899299-9899318 | None:intergenic | 35.0% |
| CGGTGACTGAAAAATTAAGT+AGG | - | chr2_4:9899722-9899741 | None:intergenic | 35.0% | |
| ! | CAACAGTTAGTTGACTTAAC+GGG | - | chr2_4:9899756-9899775 | None:intergenic | 35.0% |
| ! | ACCTGGATTTTTAAATGACG+TGG | + | chr2_4:9899792-9899811 | Msa0314230:intron | 35.0% |
| TCCACGTCATTTAAAAATCC+AGG | - | chr2_4:9899796-9899815 | None:intergenic | 35.0% | |
| CTGGTTTCTAAATCAGATCT+AGG | - | chr2_4:9899969-9899988 | None:intergenic | 35.0% | |
| GTCTTCAAACACTTTGATCT+AGG | - | chr2_4:9900059-9900078 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAGAAGAAAGTTCC+TGG | + | chr2_4:9900209-9900228 | Msa0314230:CDS | 35.0% |
| !! | GAAGCTTTAAAGAGATGCTT+AGG | + | chr2_4:9900268-9900287 | Msa0314230:three_prime_UTR | 35.0% |
| ACATTCAAAGCAACTGAAGT+AGG | + | chr2_4:9898838-9898857 | Msa0314230:intron | 35.0% | |
| CATTCAAAGCAACTGAAGTA+GGG | + | chr2_4:9898839-9898858 | Msa0314230:intron | 35.0% | |
| ATTCAAAGCAACTGAAGTAG+GGG | + | chr2_4:9898840-9898859 | Msa0314230:intron | 35.0% | |
| ! | GAGCTATGGTGTCAATAATT+TGG | - | chr2_4:9898986-9899005 | None:intergenic | 35.0% |
| TGCTTTCAAAGAGAGGTTTA+TGG | - | chr2_4:9899008-9899027 | None:intergenic | 35.0% | |
| CATACTTAAAGACATGAAGG+TGG | + | chr2_4:9899255-9899274 | Msa0314230:intron | 35.0% | |
| ! | CGACCTTTTTACTCTAAATG+TGG | - | chr2_4:9899299-9899318 | None:intergenic | 35.0% |
| CGGTGACTGAAAAATTAAGT+AGG | - | chr2_4:9899722-9899741 | None:intergenic | 35.0% | |
| ! | CAACAGTTAGTTGACTTAAC+GGG | - | chr2_4:9899756-9899775 | None:intergenic | 35.0% |
| ! | ACCTGGATTTTTAAATGACG+TGG | + | chr2_4:9899792-9899811 | Msa0314230:intron | 35.0% |
| TCCACGTCATTTAAAAATCC+AGG | - | chr2_4:9899796-9899815 | None:intergenic | 35.0% | |
| CTGGTTTCTAAATCAGATCT+AGG | - | chr2_4:9899969-9899988 | None:intergenic | 35.0% | |
| GTCTTCAAACACTTTGATCT+AGG | - | chr2_4:9900059-9900078 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAGAAGAAAGTTCC+TGG | + | chr2_4:9900209-9900228 | Msa0314230:CDS | 35.0% |
| !! | GAAGCTTTAAAGAGATGCTT+AGG | + | chr2_4:9900268-9900287 | Msa0314230:three_prime_UTR | 35.0% |
| !!! | ATGGAGCCTATGGTTTTGTT+TGG | + | chr2_4:9898605-9898624 | Msa0314230:CDS | 40.0% |
| GAGAAAAGAATGGAGAGCTT+TGG | + | chr2_4:9898637-9898656 | Msa0314230:CDS | 40.0% | |
| ! | AAAAGAATGGAGAGCTTTGG+AGG | + | chr2_4:9898640-9898659 | Msa0314230:CDS | 40.0% |
| !! | GAGCTTTGGAGGTATATGAA+TGG | + | chr2_4:9898651-9898670 | Msa0314230:intron | 40.0% |
| CCACATGGAATTTCAAGGAA+TGG | - | chr2_4:9898868-9898887 | None:intergenic | 40.0% | |
| CCATTCCTTGAAATTCCATG+TGG | + | chr2_4:9898865-9898884 | Msa0314230:intron | 40.0% | |
| TTGGACCACATGGAATTTCA+AGG | - | chr2_4:9898873-9898892 | None:intergenic | 40.0% | |
| AACACATTGTTTGGACCACA+TGG | - | chr2_4:9898883-9898902 | None:intergenic | 40.0% | |
| GTGGTCCAAACAATGTGTTA+TGG | + | chr2_4:9898884-9898903 | Msa0314230:intron | 40.0% | |
| GTTATGGACATAGTCAGTCA+CGG | + | chr2_4:9898900-9898919 | Msa0314230:intron | 40.0% | |
| AAGAGAGGTTTATGGAGCTA+TGG | - | chr2_4:9899000-9899019 | None:intergenic | 40.0% | |
| TTGGATGCTAAAGTAAGTGG+AGG | + | chr2_4:9899188-9899207 | Msa0314230:intron | 40.0% | |
| ! | TAAAGTAAGTGGAGGCACAA+AGG | + | chr2_4:9899196-9899215 | Msa0314230:intron | 40.0% |
| ! | AGTTAGTTGACTTAACGGGA+GGG | - | chr2_4:9899752-9899771 | None:intergenic | 40.0% |
| TCAACTAACTGTTGACCACT+TGG | + | chr2_4:9899762-9899781 | Msa0314230:intron | 40.0% | |
| TAGGGTGGAGAATGGAATAT+TGG | - | chr2_4:9900040-9900059 | None:intergenic | 40.0% | |
| TCAAACACTTTGATCTAGGG+TGG | - | chr2_4:9900055-9900074 | None:intergenic | 40.0% | |
| AAGGTTGGATATCGTAGAAG+TGG | + | chr2_4:9900107-9900126 | Msa0314230:intron | 40.0% | |
| GTAGAAGTGGTCCTGTTTAA+AGG | + | chr2_4:9900120-9900139 | Msa0314230:intron | 40.0% | |
| AAAATCGGAACTGTAGAACG+TGG | + | chr2_4:9900165-9900184 | Msa0314230:intron | 40.0% | |
| ! | CAAAACTTTTCCCTGCAAAC+AGG | - | chr2_4:9900195-9900214 | None:intergenic | 40.0% |
| TGAAGAAGAAAGTTCCTGGT+AGG | + | chr2_4:9900213-9900232 | Msa0314230:CDS | 40.0% | |
| AAGAAAGTTCCTGGTAGGAT+GGG | + | chr2_4:9900218-9900237 | Msa0314230:CDS | 40.0% | |
| GATGGGGATCAATTAAGAGA+AGG | + | chr2_4:9900235-9900254 | Msa0314230:exon | 40.0% | |
| !!! | ATGGAGCCTATGGTTTTGTT+TGG | + | chr2_4:9898605-9898624 | Msa0314230:CDS | 40.0% |
| GAGAAAAGAATGGAGAGCTT+TGG | + | chr2_4:9898637-9898656 | Msa0314230:CDS | 40.0% | |
| ! | AAAAGAATGGAGAGCTTTGG+AGG | + | chr2_4:9898640-9898659 | Msa0314230:CDS | 40.0% |
| !! | GAGCTTTGGAGGTATATGAA+TGG | + | chr2_4:9898651-9898670 | Msa0314230:intron | 40.0% |
| CCACATGGAATTTCAAGGAA+TGG | - | chr2_4:9898868-9898887 | None:intergenic | 40.0% | |
| CCATTCCTTGAAATTCCATG+TGG | + | chr2_4:9898865-9898884 | Msa0314230:intron | 40.0% | |
| TTGGACCACATGGAATTTCA+AGG | - | chr2_4:9898873-9898892 | None:intergenic | 40.0% | |
| AACACATTGTTTGGACCACA+TGG | - | chr2_4:9898883-9898902 | None:intergenic | 40.0% | |
| GTGGTCCAAACAATGTGTTA+TGG | + | chr2_4:9898884-9898903 | Msa0314230:intron | 40.0% | |
| GTTATGGACATAGTCAGTCA+CGG | + | chr2_4:9898900-9898919 | Msa0314230:intron | 40.0% | |
| AAGAGAGGTTTATGGAGCTA+TGG | - | chr2_4:9899000-9899019 | None:intergenic | 40.0% | |
| TTGGATGCTAAAGTAAGTGG+AGG | + | chr2_4:9899188-9899207 | Msa0314230:intron | 40.0% | |
| ! | TAAAGTAAGTGGAGGCACAA+AGG | + | chr2_4:9899196-9899215 | Msa0314230:intron | 40.0% |
| ! | AGTTAGTTGACTTAACGGGA+GGG | - | chr2_4:9899752-9899771 | None:intergenic | 40.0% |
| TCAACTAACTGTTGACCACT+TGG | + | chr2_4:9899762-9899781 | Msa0314230:intron | 40.0% | |
| TAGGGTGGAGAATGGAATAT+TGG | - | chr2_4:9900040-9900059 | None:intergenic | 40.0% | |
| TCAAACACTTTGATCTAGGG+TGG | - | chr2_4:9900055-9900074 | None:intergenic | 40.0% | |
| AAGGTTGGATATCGTAGAAG+TGG | + | chr2_4:9900107-9900126 | Msa0314230:intron | 40.0% | |
| GTAGAAGTGGTCCTGTTTAA+AGG | + | chr2_4:9900120-9900139 | Msa0314230:intron | 40.0% | |
| AAAATCGGAACTGTAGAACG+TGG | + | chr2_4:9900165-9900184 | Msa0314230:intron | 40.0% | |
| ! | CAAAACTTTTCCCTGCAAAC+AGG | - | chr2_4:9900195-9900214 | None:intergenic | 40.0% |
| TGAAGAAGAAAGTTCCTGGT+AGG | + | chr2_4:9900213-9900232 | Msa0314230:CDS | 40.0% | |
| AAGAAAGTTCCTGGTAGGAT+GGG | + | chr2_4:9900218-9900237 | Msa0314230:CDS | 40.0% | |
| GATGGGGATCAATTAAGAGA+AGG | + | chr2_4:9900235-9900254 | Msa0314230:exon | 40.0% | |
| !!! | GAGCCTATGGTTTTGTTTGG+AGG | + | chr2_4:9898608-9898627 | Msa0314230:CDS | 45.0% |
| CGACCTCCAAACAAAACCAT+AGG | - | chr2_4:9898614-9898633 | None:intergenic | 45.0% | |
| GAGGTCGCAAGAGAAAAGAA+TGG | + | chr2_4:9898627-9898646 | Msa0314230:CDS | 45.0% | |
| TGAAATATTTGGCACGGGTG+AGG | + | chr2_4:9899111-9899130 | Msa0314230:intron | 45.0% | |
| TTAAGTAGGGACGAAAACGG+TGG | - | chr2_4:9899708-9899727 | None:intergenic | 45.0% | |
| ! | CAGTTAGTTGACTTAACGGG+AGG | - | chr2_4:9899753-9899772 | None:intergenic | 45.0% |
| GCTGATGTGGCATGCTTATA+TGG | - | chr2_4:9899821-9899840 | None:intergenic | 45.0% | |
| CAGATGAGAGTGAACAAGAC+TGG | - | chr2_4:9899988-9900007 | None:intergenic | 45.0% | |
| ! | CTTTGATCTAGGGTGGAGAA+TGG | - | chr2_4:9900048-9900067 | None:intergenic | 45.0% |
| TCTGTTTGCACGTGTATCGT+CGG | + | chr2_4:9900080-9900099 | Msa0314230:intron | 45.0% | |
| GAAGAAAGTTCCTGGTAGGA+TGG | + | chr2_4:9900217-9900236 | Msa0314230:CDS | 45.0% | |
| AGAAAGTTCCTGGTAGGATG+GGG | + | chr2_4:9900219-9900238 | Msa0314230:CDS | 45.0% | |
| TAATTGATCCCCATCCTACC+AGG | - | chr2_4:9900230-9900249 | None:intergenic | 45.0% | |
| !!! | GAGCCTATGGTTTTGTTTGG+AGG | + | chr2_4:9898608-9898627 | Msa0314230:CDS | 45.0% |
| CGACCTCCAAACAAAACCAT+AGG | - | chr2_4:9898614-9898633 | None:intergenic | 45.0% | |
| GAGGTCGCAAGAGAAAAGAA+TGG | + | chr2_4:9898627-9898646 | Msa0314230:CDS | 45.0% | |
| TGAAATATTTGGCACGGGTG+AGG | + | chr2_4:9899111-9899130 | Msa0314230:intron | 45.0% | |
| TTAAGTAGGGACGAAAACGG+TGG | - | chr2_4:9899708-9899727 | None:intergenic | 45.0% | |
| ! | CAGTTAGTTGACTTAACGGG+AGG | - | chr2_4:9899753-9899772 | None:intergenic | 45.0% |
| GCTGATGTGGCATGCTTATA+TGG | - | chr2_4:9899821-9899840 | None:intergenic | 45.0% | |
| CAGATGAGAGTGAACAAGAC+TGG | - | chr2_4:9899988-9900007 | None:intergenic | 45.0% | |
| ! | CTTTGATCTAGGGTGGAGAA+TGG | - | chr2_4:9900048-9900067 | None:intergenic | 45.0% |
| TCTGTTTGCACGTGTATCGT+CGG | + | chr2_4:9900080-9900099 | Msa0314230:intron | 45.0% | |
| GAAGAAAGTTCCTGGTAGGA+TGG | + | chr2_4:9900217-9900236 | Msa0314230:CDS | 45.0% | |
| AGAAAGTTCCTGGTAGGATG+GGG | + | chr2_4:9900219-9900238 | Msa0314230:CDS | 45.0% | |
| TAATTGATCCCCATCCTACC+AGG | - | chr2_4:9900230-9900249 | None:intergenic | 45.0% | |
| !!! | TAATTTTTAAATTTTTAAAC+AGG | - | chr2_4:9899524-9899543 | None:intergenic | 5.0% |
| !!! | AATAAAACTTATTTTAATAT+TGG | + | chr2_4:9899617-9899636 | Msa0314230:intron | 5.0% |
| !!! | ATAAAACTTATTTTAATATT+GGG | + | chr2_4:9899618-9899637 | Msa0314230:intron | 5.0% |
| !!! | TAATTTTTAAATTTTTAAAC+AGG | - | chr2_4:9899524-9899543 | None:intergenic | 5.0% |
| !!! | AATAAAACTTATTTTAATAT+TGG | + | chr2_4:9899617-9899636 | Msa0314230:intron | 5.0% |
| !!! | ATAAAACTTATTTTAATATT+GGG | + | chr2_4:9899618-9899637 | Msa0314230:intron | 5.0% |
| TATTTGGCACGGGTGAGGTA+AGG | + | chr2_4:9899116-9899135 | Msa0314230:intron | 50.0% | |
| CTTAACGGGAGGGACGAAAA+CGG | - | chr2_4:9899742-9899761 | None:intergenic | 50.0% | |
| TGTATCGTCGGATCGAAGGT+TGG | + | chr2_4:9900092-9900111 | Msa0314230:intron | 50.0% | |
| ATCGGAACTGTAGAACGTGG+TGG | + | chr2_4:9900168-9900187 | Msa0314230:intron | 50.0% | |
| TATTTGGCACGGGTGAGGTA+AGG | + | chr2_4:9899116-9899135 | Msa0314230:intron | 50.0% | |
| CTTAACGGGAGGGACGAAAA+CGG | - | chr2_4:9899742-9899761 | None:intergenic | 50.0% | |
| TGTATCGTCGGATCGAAGGT+TGG | + | chr2_4:9900092-9900111 | Msa0314230:intron | 50.0% | |
| ATCGGAACTGTAGAACGTGG+TGG | + | chr2_4:9900168-9900187 | Msa0314230:intron | 50.0% | |
| ! | ATCCAGGTGTCACAGCCAAG+TGG | - | chr2_4:9899780-9899799 | None:intergenic | 55.0% |
| CACGTGTATCGTCGGATCGA+AGG | + | chr2_4:9900088-9900107 | Msa0314230:intron | 55.0% | |
| AACGTGGTGGTCCTGTTTGC+AGG | + | chr2_4:9900181-9900200 | Msa0314230:intron | 55.0% | |
| ACGTGGTGGTCCTGTTTGCA+GGG | + | chr2_4:9900182-9900201 | Msa0314230:intron | 55.0% | |
| ! | ATCCAGGTGTCACAGCCAAG+TGG | - | chr2_4:9899780-9899799 | None:intergenic | 55.0% |
| CACGTGTATCGTCGGATCGA+AGG | + | chr2_4:9900088-9900107 | Msa0314230:intron | 55.0% | |
| AACGTGGTGGTCCTGTTTGC+AGG | + | chr2_4:9900181-9900200 | Msa0314230:intron | 55.0% | |
| ACGTGGTGGTCCTGTTTGCA+GGG | + | chr2_4:9900182-9900201 | Msa0314230:intron | 55.0% | |
| TTGGCACGGGTGAGGTAAGG+TGG | + | chr2_4:9899119-9899138 | Msa0314230:intron | 60.0% | |
| TGGCACGGGTGAGGTAAGGT+GGG | + | chr2_4:9899120-9899139 | Msa0314230:intron | 60.0% | |
| GACCACTTGGCTGTGACACC+TGG | + | chr2_4:9899775-9899794 | Msa0314230:intron | 60.0% | |
| TTGGCACGGGTGAGGTAAGG+TGG | + | chr2_4:9899119-9899138 | Msa0314230:intron | 60.0% | |
| TGGCACGGGTGAGGTAAGGT+GGG | + | chr2_4:9899120-9899139 | Msa0314230:intron | 60.0% | |
| GACCACTTGGCTGTGACACC+TGG | + | chr2_4:9899775-9899794 | Msa0314230:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9898605 | 9900296 | 9898605 | ID=Msa0314230;Name=Msa0314230 |
| chr2_4 | mRNA | 9898605 | 9900296 | 9898605 | ID=Msa0314230-mRNA-1;Parent=Msa0314230;Name=Msa0314230-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0.5|0.5|1|1|2|46|34 |
| chr2_4 | exon | 9898605 | 9898661 | 9898605 | ID=Msa0314230-mRNA-1:exon:3829;Parent=Msa0314230-mRNA-1 |
| chr2_4 | exon | 9900203 | 9900296 | 9900203 | ID=Msa0314230-mRNA-1:exon:3830;Parent=Msa0314230-mRNA-1 |
| chr2_4 | CDS | 9898605 | 9898661 | 9898605 | ID=Msa0314230-mRNA-1:cds;Parent=Msa0314230-mRNA-1 |
| chr2_4 | CDS | 9900203 | 9900250 | 9900203 | ID=Msa0314230-mRNA-1:cds;Parent=Msa0314230-mRNA-1 |
| chr2_4 | three_prime_UTR | 9900251 | 9900296 | 9900251 | ID=Msa0314230-mRNA-1:three_prime_utr;Parent=Msa0314230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
