AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474700 MtrunA17_Chr3g0131621 98.456 518 7 1 1 518 1 517 0.0 1046
Msa0474700 MtrunA17_Chr8g0385711 55.754 504 191 5 12 514 35 507 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474700 AT5G50970.1 61.765 510 172 8 8 516 24 511 0.0 617
Msa0474700 AT5G19920.1 56.983 358 154 0 159 516 298 655 2.91e-147 437

Find 117 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAACTCTTGCGTATTAA+AGG 0.118944 3_3:+77612576 None:intergenic
AGTAAAGAAAAGAATTTATT+TGG 0.151676 3_3:-77608823 Msa0474700:three_prime_UTR
CGGACAGAACTTCATGCTTT+TGG 0.187053 3_3:-77609230 Msa0474700:CDS
TTTATTTGGAACGGTAAATT+AGG 0.206467 3_3:-77608809 Msa0474700:three_prime_UTR
GGTCGACTTCAACTTGTTTA+TGG 0.210939 3_3:-77610263 Msa0474700:CDS
ACAAATTGGAATAAAATTAA+AGG 0.221064 3_3:-77610731 Msa0474700:CDS
GAAAATCATTAATTGCAATT+TGG 0.221881 3_3:-77608677 Msa0474700:three_prime_UTR
GGTGCGGACAGGAGAATATT+TGG 0.221929 3_3:-77610361 Msa0474700:CDS
CACAAATATCAGTTACAAAT+TGG 0.251917 3_3:-77610745 Msa0474700:CDS
TGGATGGATTGGTCAACTTC+TGG 0.282759 3_3:-77611679 Msa0474700:CDS
TCTGCTGTCATGGGTGTTGC+TGG 0.313002 3_3:-77610415 Msa0474700:CDS
TAATGAAATAATCGAGAAAA+TGG 0.315483 3_3:-77614266 Msa0474700:exon
CCCGATGACCGTGAAATCTT+CGG 0.326249 3_3:+77613806 None:intergenic
AAAAGAGCCTGTTTCCTTCC+GGG 0.332486 3_3:+77610795 None:intergenic
CAAATTGGAATAAAATTAAA+GGG 0.340540 3_3:-77610730 Msa0474700:CDS
GCTCACCAGAAAAGAGTCTT+TGG 0.350080 3_3:-77609056 Msa0474700:CDS
AACTTGTTTATGGTTCAAAC+AGG 0.350438 3_3:-77610253 Msa0474700:CDS
ATATAAGATATAATCTTAAC+AGG 0.350592 3_3:-77609097 Msa0474700:CDS
TCTTCATTCTTCTGCTGTCA+TGG 0.353380 3_3:-77610425 Msa0474700:CDS
GAAAAGAGCCTGTTTCCTTC+CGG 0.362118 3_3:+77610794 None:intergenic
GAACGTTCATTCCTATCAAT+TGG 0.370380 3_3:+77613881 None:intergenic
ACCTCGAAGACGAGCCAGTT+TGG 0.373854 3_3:+77613985 None:intergenic
ACAGAACACTTTACTTCATC+AGG 0.377058 3_3:+77608964 None:intergenic
AACTCAGATGATGATGATAA+TGG 0.377955 3_3:-77613941 Msa0474700:CDS
GTTCATACTTCTTCGGTTAG+TGG 0.381037 3_3:-77613749 Msa0474700:CDS
TTGAGATGTGGTTGCTTGAT+TGG 0.389301 3_3:+77612535 None:intergenic
CTTGGCACCCGGAAGGAAAC+AGG 0.393450 3_3:-77610802 Msa0474700:CDS
ACCGAAGATTTCACGGTCAT+CGG 0.397677 3_3:-77613807 Msa0474700:CDS
TTGGGAGTGTTGCAGTGCTT+TGG 0.401238 3_3:-77611699 Msa0474700:intron
AGAGGACAAGCCCCATGTTA+AGG 0.404493 3_3:-77610581 Msa0474700:CDS
GTGCGGACAGGAGAATATTT+GGG 0.407971 3_3:-77610360 Msa0474700:CDS
GGCTACAACGACAAATTAGA+TGG 0.408918 3_3:+77608723 None:intergenic
GATCGAATAGTCCAATTGAT+AGG 0.414202 3_3:-77613892 Msa0474700:CDS
AAGTTGAAGTCGACCGGATT+GGG 0.417117 3_3:+77610271 None:intergenic
TCAATCAGCTCTGATTAATC+AGG 0.417753 3_3:-77609183 Msa0474700:CDS
TTCGTCAGTTCATACTTCTT+CGG 0.422150 3_3:-77613756 Msa0474700:CDS
GAGGACAAGCCCCATGTTAA+GGG 0.422318 3_3:-77610580 Msa0474700:CDS
GATGGTCTTTATATAACATC+TGG 0.422463 3_3:-77609149 Msa0474700:CDS
GTATTAAAGGAATCAATTCC+TGG 0.423259 3_3:+77612589 None:intergenic
ATGTTGAAGGGAAGGATAAA+GGG 0.424142 3_3:-77613691 Msa0474700:CDS
AATGTTGAAGGGAAGGATAA+AGG 0.425677 3_3:-77613692 Msa0474700:CDS
TCTGAAGAGCACGTTGTAAC+GGG 0.428339 3_3:+77614340 None:intergenic
CTTCATTCTTCTGCTGTCAT+GGG 0.430235 3_3:-77610424 Msa0474700:CDS
CTGTTACACCGAAGATTTCA+CGG 0.435935 3_3:-77613814 Msa0474700:CDS
AGATTCCTGTGCAATGGTCT+TGG 0.436295 3_3:+77610445 None:intergenic
GGGTGCCAAGCTATATCTTC+TGG 0.437830 3_3:+77610815 None:intergenic
CCGAAGATTTCACGGTCATC+GGG 0.440560 3_3:-77613806 Msa0474700:CDS
TCCAAACTGGCTCGTCTTCG+AGG 0.450756 3_3:-77613986 Msa0474700:CDS
TCAGTATATACTGCTGATAG+TGG 0.456056 3_3:-77610773 Msa0474700:CDS
CATTGATAATTCCCTTAACA+TGG 0.459099 3_3:+77610569 None:intergenic
TTGCAGTGCTTTGGATGGAT+TGG 0.459655 3_3:-77611690 Msa0474700:intron
CATGAGTGTCGTTCCCAATC+CGG 0.470143 3_3:-77610284 Msa0474700:CDS
CAAGTTGAAGTCGACCGGAT+TGG 0.472849 3_3:+77610270 None:intergenic
TCAGGGCATACCCTTTGGCT+TGG 0.473021 3_3:+77611651 None:intergenic
ATTTCACGGTCATCGGGAAA+AGG 0.477985 3_3:-77613800 Msa0474700:CDS
AGCAGGATGATGAGGACAAA+TGG 0.478363 3_3:-77610471 Msa0474700:CDS
ATAGATCAGCAAAATGTTGA+AGG 0.478843 3_3:-77613704 Msa0474700:CDS
GATGTTATATAAAGACCATC+AGG 0.485540 3_3:+77609152 None:intergenic
TAATATTCAGCACCAACAAA+AGG 0.490460 3_3:+77608935 None:intergenic
AGAAAAGAATTTATTTGGAA+CGG 0.493523 3_3:-77608818 Msa0474700:three_prime_UTR
TGTTATCTGCAGGTGCGGAC+AGG 0.496576 3_3:-77610372 Msa0474700:CDS
CAGCTCTGATTAATCAGGCT+TGG 0.504417 3_3:-77609178 Msa0474700:CDS
TATCATCTGATCTCAACATT+GGG 0.505917 3_3:-77608995 Msa0474700:CDS
ATATCATCTGATCTCAACAT+TGG 0.509338 3_3:-77608996 Msa0474700:CDS
GAGTGTTGCAGTGCTTTGGA+TGG 0.517229 3_3:-77611695 Msa0474700:intron
TACAAAACATGTGTCTTCCC+AGG 0.519960 3_3:+77610531 None:intergenic
CATGTTAAGGGAATTATCAA+TGG 0.520231 3_3:-77610568 Msa0474700:CDS
GTGATCATGCTGTTGTACTT+TGG 0.526531 3_3:-77610498 Msa0474700:CDS
TTTGGGTTTGATGTTGGTGC+AGG 0.530165 3_3:-77610343 Msa0474700:CDS
GAAATCTTCGGTGTAACAGC+AGG 0.530314 3_3:+77613818 None:intergenic
AACTGACGAAACAGCTACTT+CGG 0.530754 3_3:+77613769 None:intergenic
TGTTGTACTTTGGCGCGAGC+AGG 0.531627 3_3:-77610488 Msa0474700:CDS
GACGGAGATTGTTAACTTCG+CGG 0.531658 3_3:+77614170 None:intergenic
AAGCAGATTGTGTTATCTGC+AGG 0.531813 3_3:-77610382 Msa0474700:CDS
ATATCAAATATGTGAATCAC+AGG 0.533530 3_3:+77609116 None:intergenic
AGAATATTTGGGTTTGATGT+TGG 0.536408 3_3:-77610349 Msa0474700:CDS
GTCTGAAGAGCACGTTGTAA+CGG 0.537155 3_3:+77614339 None:intergenic
ACGGAGATTGTTAACTTCGC+GGG 0.537563 3_3:+77614171 None:intergenic
ACATCTCAAGTCAGCACAAG+AGG 0.537650 3_3:-77612521 Msa0474700:CDS
AGAACGTGTGAAATTCTTAG+AGG 0.541392 3_3:-77610599 Msa0474700:CDS
GGAAAGGCATGCTTAGATGT+TGG 0.543340 3_3:-77608773 Msa0474700:three_prime_UTR
TGGTATAGGCAAGACGGTGA+CGG 0.548190 3_3:+77614152 None:intergenic
GATGATATAGATATGAGAAG+AGG 0.551317 3_3:+77609011 None:intergenic
AAAACGTGATGTATCACCTC+AGG 0.551500 3_3:+77608702 None:intergenic
TCTTGTGCTGACTTGAGATG+TGG 0.551926 3_3:+77612523 None:intergenic
TTCTGGAAAGTCCAAGCCAA+AGG 0.557141 3_3:-77611662 Msa0474700:CDS
ATTGATAATTCCCTTAACAT+GGG 0.559536 3_3:+77610570 None:intergenic
TCAGCAAAATGTTGAAGGGA+AGG 0.560402 3_3:-77613699 Msa0474700:CDS
GATTATTTGATATTAGATTG+AGG 0.569773 3_3:-77609253 Msa0474700:CDS
ATAAACAAGTTGAAGTCGAC+CGG 0.571664 3_3:+77610265 None:intergenic
GAATGAAGATTCCTGTGCAA+TGG 0.573307 3_3:+77610439 None:intergenic
TCTGGAAAGTCCAAGCCAAA+GGG 0.573565 3_3:-77611661 Msa0474700:intron
ATTCAGCACCAACAAAAGGA+TGG 0.578426 3_3:+77608939 None:intergenic
AATCAGGCTTGGTCTCCTGA+TGG 0.579710 3_3:-77609167 Msa0474700:CDS
ATACTTCTTCGGTTAGTGGA+GGG 0.580151 3_3:-77613745 Msa0474700:CDS
CATACTTCTTCGGTTAGTGG+AGG 0.583662 3_3:-77613746 Msa0474700:CDS
GATGGCCAGAAGATATAGCT+TGG 0.587820 3_3:-77610820 Msa0474700:CDS
AAAGAGTCTTTGGAGCCTTG+TGG 0.589884 3_3:-77609046 Msa0474700:CDS
TTGATAATTCCCTTAACATG+GGG 0.590416 3_3:+77610571 None:intergenic
AAATTGGAATAAAATTAAAG+GGG 0.598095 3_3:-77610729 Msa0474700:intron
GGAAGCCAAGACCATTGCAC+AGG 0.600850 3_3:-77610450 Msa0474700:CDS
TAGATCAGCAAAATGTTGAA+GGG 0.602211 3_3:-77613703 Msa0474700:CDS
TAATTTGTCGTTGTAGCCTG+AGG 0.603955 3_3:-77608718 Msa0474700:three_prime_UTR
TTATATAACATCTGGTTCAG+CGG 0.612784 3_3:-77609141 Msa0474700:CDS
GATATAGCTTGGCACCCGGA+AGG 0.613083 3_3:-77610809 Msa0474700:CDS
ATATATGCAGCTTGATGATG+CGG 0.615595 3_3:-77614032 Msa0474700:intron
TTGGCGCGAGCAGGATGATG+AGG 0.619686 3_3:-77610479 Msa0474700:CDS
AGAAGATATAGCTTGGCACC+CGG 0.619978 3_3:-77610813 Msa0474700:CDS
CAGAACACTTTACTTCATCA+GGG 0.627232 3_3:+77608965 None:intergenic
ACAAAACATGTGTCTTCCCA+GGG 0.629446 3_3:+77610532 None:intergenic
GATTGTGTTATCTGCAGGTG+CGG 0.637682 3_3:-77610377 Msa0474700:CDS
ACTTGTTTATGGTTCAAACA+GGG 0.647131 3_3:-77610252 Msa0474700:intron
AGGAATAGACTGAAGCCACA+AGG 0.650340 3_3:+77609031 None:intergenic
GTCAGCACAAGAGGAAATTG+CGG 0.652458 3_3:-77612512 Msa0474700:CDS
ATCAGTAGAGTTAAGCAGAG+AGG 0.678641 3_3:+77610865 None:intergenic
GCTCTTCAGACAAGAAAGCG+AGG 0.696860 3_3:-77614327 Msa0474700:five_prime_UTR
TATTTGATATTAGATTGAGG+CGG 0.699704 3_3:-77609250 Msa0474700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATATTCAGAAACAA+GGG + chr3_3:77608949-77608968 None:intergenic 15.0%
!! AATTTAAATATTCAGAAACA+AGG + chr3_3:77608950-77608969 None:intergenic 15.0%
!! TTAATTAATTTCACAAACTT+AGG + chr3_3:77608989-77609008 None:intergenic 15.0%
!!! ATTGGTAATAATGTAAATAA+TGG - chr3_3:77609569-77609588 Msa0474700:intron 15.0%
!! ATTTATAGATTATAGGTATT+AGG - chr3_3:77609735-77609754 Msa0474700:intron 15.0%
!!! TTTTTATTTGTCTATAGATT+AGG - chr3_3:77609778-77609797 Msa0474700:intron 15.0%
!! CTGGTAATAATTTAAAAAAA+TGG - chr3_3:77609927-77609946 Msa0474700:intron 15.0%
!!! TTCAAATGTAAATTCTAAAA+TGG - chr3_3:77610880-77610899 Msa0474700:intron 15.0%
!! TAGTCAAAATACAATTAAAT+GGG + chr3_3:77611991-77612010 None:intergenic 15.0%
!! ATAGTCAAAATACAATTAAA+TGG + chr3_3:77611992-77612011 None:intergenic 15.0%
!! AAATATGAATTAGATTATGT+GGG + chr3_3:77612121-77612140 None:intergenic 15.0%
!! AAAATATGAATTAGATTATG+TGG + chr3_3:77612122-77612141 None:intergenic 15.0%
!! ACAAATTGGAATAAAATTAA+AGG - chr3_3:77612309-77612328 Msa0474700:intron 15.0%
!! CAAATTGGAATAAAATTAAA+GGG - chr3_3:77612310-77612329 Msa0474700:intron 15.0%
!! AAATTGGAATAAAATTAAAG+GGG - chr3_3:77612311-77612330 Msa0474700:intron 15.0%
!!! AAAGTTTAAATTTTATGTCA+GGG + chr3_3:77612355-77612374 None:intergenic 15.0%
!! AAAATTTAAACTTTGGATTT+AGG - chr3_3:77612361-77612380 Msa0474700:intron 15.0%
!! AATCAATATTATTATCAAGT+AGG + chr3_3:77613558-77613577 None:intergenic 15.0%
!! ATATAAGATATAATCTTAAC+AGG - chr3_3:77613943-77613962 Msa0474700:CDS 15.0%
!! AGTAAAGAAAAGAATTTATT+TGG - chr3_3:77614217-77614236 Msa0474700:CDS 15.0%
!!! TAAATTAGGAAAATTTTGAT+TGG - chr3_3:77614245-77614264 Msa0474700:CDS 15.0%
!!! AAATTAGGAAAATTTTGATT+GGG - chr3_3:77614246-77614265 Msa0474700:CDS 15.0%
!! TAATGAAATAATCGAGAAAA+TGG - chr3_3:77608774-77608793 Msa0474700:three_prime_UTR 20.0%
!!! GATATTCATTTATTGACTAT+AGG - chr3_3:77609392-77609411 Msa0474700:intron 20.0%
!!! ATTTATTGACTATAGGTATT+AGG - chr3_3:77609399-77609418 Msa0474700:intron 20.0%
!!! TTTTTGTTCATCTCTTTATT+AGG - chr3_3:77609441-77609460 Msa0474700:intron 20.0%
!! GACATTCATTTATAGATTAT+AGG - chr3_3:77609728-77609747 Msa0474700:intron 20.0%
!!! GTTTTTGAAAAATTGAAATG+TGG - chr3_3:77610161-77610180 Msa0474700:intron 20.0%
!!! TGTATATTTAGTTGGTATAT+TGG - chr3_3:77610280-77610299 Msa0474700:CDS 20.0%
!! ACTCGTTAATAATGATTAAT+AGG - chr3_3:77610650-77610669 Msa0474700:intron 20.0%
!! AATATGATGAATCAATATCT+AGG - chr3_3:77610797-77610816 Msa0474700:CDS 20.0%
!!! ATATCTAGGCTTATAATTTT+AGG - chr3_3:77610811-77610830 Msa0474700:CDS 20.0%
!!! TATCTAGGCTTATAATTTTA+GGG - chr3_3:77610812-77610831 Msa0474700:CDS 20.0%
!! AATATAAGCTTAAACCAAAA+CGG + chr3_3:77610915-77610934 None:intergenic 20.0%
!!! TTATTTTATTTCATAAACGC+TGG - chr3_3:77611173-77611192 Msa0474700:intron 20.0%
!!! TCTTTTGTAATATATGTTTC+TGG - chr3_3:77611273-77611292 Msa0474700:intron 20.0%
!! AGATATGCTAGATATAAAAT+TGG - chr3_3:77611477-77611496 Msa0474700:intron 20.0%
!! GATATGCTAGATATAAAATT+GGG - chr3_3:77611478-77611497 Msa0474700:intron 20.0%
!!! TCTCTATCAATTTTTATTAG+AGG - chr3_3:77611596-77611615 Msa0474700:intron 20.0%
!! ACTTGAAAAAACAAACAAAA+TGG + chr3_3:77611932-77611951 None:intergenic 20.0%
!!! CAAAGTTTAAATTTTATGTC+AGG + chr3_3:77612356-77612375 None:intergenic 20.0%
!! CTGACATAAAATTTAAACTT+TGG - chr3_3:77612354-77612373 Msa0474700:intron 20.0%
!! AAAATTTATATGCAATTGAC+AGG - chr3_3:77612417-77612436 Msa0474700:intron 20.0%
!! TGTAGAAAATAAAAGCAAAA+AGG + chr3_3:77612849-77612868 None:intergenic 20.0%
!!! TTTTTGCTTTTATTTTCTAC+AGG - chr3_3:77612848-77612867 Msa0474700:intron 20.0%
!!! ATTGGAAACAAAAAGAATTT+TGG - chr3_3:77613099-77613118 Msa0474700:intron 20.0%
!!! TGTCTTTTAATTGGAAAAAA+TGG - chr3_3:77613187-77613206 Msa0474700:intron 20.0%
!!! CAATAAAAATTTTCACCATA+AGG + chr3_3:77613256-77613275 None:intergenic 20.0%
!! GATTATTTGATATTAGATTG+AGG - chr3_3:77613787-77613806 Msa0474700:CDS 20.0%
!!! GAAGAAATATTGATTTTAGT+TGG - chr3_3:77614157-77614176 Msa0474700:CDS 20.0%
!! AGAAAAGAATTTATTTGGAA+CGG - chr3_3:77614222-77614241 Msa0474700:CDS 20.0%
!! GAAAATCATTAATTGCAATT+TGG - chr3_3:77614363-77614382 Msa0474700:five_prime_UTR 20.0%
! AAAAAATTCAGAATCCAAAC+TGG - chr3_3:77609041-77609060 Msa0474700:CDS 25.0%
! AAAGGGACAAAAAGAAAATT+TGG - chr3_3:77609366-77609385 Msa0474700:intron 25.0%
!!! TCTCTTTATTAGGTTTTGTT+TGG - chr3_3:77609451-77609470 Msa0474700:intron 25.0%
! CTTATAAGAACAATCTTACT+AGG + chr3_3:77609517-77609536 None:intergenic 25.0%
!!! TCTATAGATTAGGTTTTGTT+TGG - chr3_3:77609788-77609807 Msa0474700:intron 25.0%
! ACAATAGAGTCATTTAAACT+GGG + chr3_3:77609839-77609858 None:intergenic 25.0%
! AACAATAGAGTCATTTAAAC+TGG + chr3_3:77609840-77609859 None:intergenic 25.0%
!!! CTCAGTAAGAATGTTTTTAT+AGG - chr3_3:77609864-77609883 Msa0474700:intron 25.0%
! AAGAAAATAATCCAATTACC+TGG + chr3_3:77610594-77610613 None:intergenic 25.0%
! GATTGGTAAACTTTATAAGT+TGG + chr3_3:77610844-77610863 None:intergenic 25.0%
! TATAAAAGAAAGTTGTAGCT+AGG - chr3_3:77611066-77611085 Msa0474700:intron 25.0%
! TAGATATAAAATTGGGAACA+GGG - chr3_3:77611485-77611504 Msa0474700:intron 25.0%
! GCAAGCATATTATATGATAT+GGG + chr3_3:77611662-77611681 None:intergenic 25.0%
! TGCAAGCATATTATATGATA+TGG + chr3_3:77611663-77611682 None:intergenic 25.0%
!! AGTTACTTTGTTACAACTAT+AGG + chr3_3:77611693-77611712 None:intergenic 25.0%
! AGATTGTTAGTTACTACTAT+AGG - chr3_3:77611768-77611787 Msa0474700:intron 25.0%
! TACATGCTTAATATATGAAG+TGG - chr3_3:77611800-77611819 Msa0474700:intron 25.0%
! ACATGCTTAATATATGAAGT+GGG - chr3_3:77611801-77611820 Msa0474700:intron 25.0%
! CTGATGATCTACAAAATAAT+AGG + chr3_3:77612155-77612174 None:intergenic 25.0%
! CACAAATATCAGTTACAAAT+TGG - chr3_3:77612295-77612314 Msa0474700:intron 25.0%
!!! TGGATTTAGGTTTCTTTTAT+TGG - chr3_3:77612374-77612393 Msa0474700:intron 25.0%
!! ATTGATAATTCCCTTAACAT+GGG + chr3_3:77612473-77612492 None:intergenic 25.0%
! AGCAAAAAGGTTTAACAAAT+GGG + chr3_3:77612836-77612855 None:intergenic 25.0%
! AAGCAAAAAGGTTTAACAAA+TGG + chr3_3:77612837-77612856 None:intergenic 25.0%
!!! TGTCTCGTTTTTTTTGTTTT+AGG - chr3_3:77612924-77612943 Msa0474700:intron 25.0%
!!! GTCTCGTTTTTTTTGTTTTA+GGG - chr3_3:77612925-77612944 Msa0474700:intron 25.0%
!! TTTTTCCAATTAAAAGACAC+AGG + chr3_3:77613186-77613205 None:intergenic 25.0%
! AAAAAATGGAATCTCTATGA+AGG - chr3_3:77613201-77613220 Msa0474700:intron 25.0%
! AAAAATGGAATCTCTATGAA+GGG - chr3_3:77613202-77613221 Msa0474700:intron 25.0%
!! TCCTTTTCCTTTTATATACA+TGG - chr3_3:77613292-77613311 Msa0474700:intron 25.0%
! TCCATGTATATAAAAGGAAA+AGG + chr3_3:77613296-77613315 None:intergenic 25.0%
!!! ATGTAGTTGTCTTTTTTATG+TGG - chr3_3:77613335-77613354 Msa0474700:intron 25.0%
!!! TTTTTTATGTGGATGACATT+TGG - chr3_3:77613346-77613365 Msa0474700:intron 25.0%
!! TTTTTATGTGGATGACATTT+GGG - chr3_3:77613347-77613366 Msa0474700:intron 25.0%
! CAAGAACATGAATAACAAAA+GGG + chr3_3:77613509-77613528 None:intergenic 25.0%
! TTCTATTCTACATTGAATTC+AGG - chr3_3:77613584-77613603 Msa0474700:intron 25.0%
! AAAGTATGTTCCTATCTTAA+AGG + chr3_3:77613620-77613639 None:intergenic 25.0%
! AACTAAATAATACCCAAGAA+TGG + chr3_3:77613723-77613742 None:intergenic 25.0%
!!! TAACTACTTTTCTTTCTATC+AGG - chr3_3:77613745-77613764 Msa0474700:CDS 25.0%
! TATTTGATATTAGATTGAGG+CGG - chr3_3:77613790-77613809 Msa0474700:CDS 25.0%
! ATATCAAATATGTGAATCAC+AGG + chr3_3:77613927-77613946 None:intergenic 25.0%
!! ATGTTGCATCAAATTTTTGT+AGG - chr3_3:77614135-77614154 Msa0474700:intron 25.0%
!!! TTGGAACTTTGAAATTTTGT+GGG - chr3_3:77614176-77614195 Msa0474700:CDS 25.0%
!! TTTATTTGGAACGGTAAATT+AGG - chr3_3:77614231-77614250 Msa0474700:CDS 25.0%
AGAATTGAAAAAGACATTGG+CGG - chr3_3:77608669-77608688 Msa0474700:three_prime_UTR 30.0%
!!! AATGACCTGATTTTTGGTAT+AGG + chr3_3:77608905-77608924 None:intergenic 30.0%
! GAAGAAAATGACCTGATTTT+TGG + chr3_3:77608911-77608930 None:intergenic 30.0%
AATATTCAGAAACAAGGGTT+AGG + chr3_3:77608944-77608963 None:intergenic 30.0%
! AACTCAGATGATGATGATAA+TGG - chr3_3:77609099-77609118 Msa0474700:CDS 30.0%
ATAGATCAGCAAAATGTTGA+AGG - chr3_3:77609336-77609355 Msa0474700:intron 30.0%
TAGATCAGCAAAATGTTGAA+GGG - chr3_3:77609337-77609356 Msa0474700:intron 30.0%
!!! GTTTTGTTTGGATTAGTTTC+TGG - chr3_3:77609463-77609482 Msa0474700:intron 30.0%
ATAACTAACCCTACTTAACT+AGG - chr3_3:77609969-77609988 Msa0474700:intron 30.0%
ACGAATTACCTAGTTAAGTA+GGG + chr3_3:77609980-77609999 None:intergenic 30.0%
AACGAATTACCTAGTTAAGT+AGG + chr3_3:77609981-77610000 None:intergenic 30.0%
AAAGCTTATATGAACTGAAC+TGG - chr3_3:77610252-77610271 Msa0474700:intron 30.0%
TGGCTCTTTGTATATTTAGT+TGG - chr3_3:77610272-77610291 Msa0474700:CDS 30.0%
!!! TTCTCTTTGGTTTTCATATC+CGG - chr3_3:77610331-77610350 Msa0474700:CDS 30.0%
GTATTAAAGGAATCAATTCC+TGG + chr3_3:77610454-77610473 None:intergenic 30.0%
GAGGTCAAATGTTATTAACA+GGG - chr3_3:77610747-77610766 Msa0474700:CDS 30.0%
!!! AGGCTTATAATTTTAGGGTA+TGG - chr3_3:77610817-77610836 Msa0474700:CDS 30.0%
!!! GGCTTATAATTTTAGGGTAT+GGG - chr3_3:77610818-77610837 Msa0474700:CDS 30.0%
! AATGGAAGTTTTTACCGTTT+TGG - chr3_3:77610898-77610917 Msa0474700:intron 30.0%
AAGAGATATTCATACAACAG+AGG + chr3_3:77610977-77610996 None:intergenic 30.0%
GTTATTGTTCAAACCACTAA+AGG + chr3_3:77611237-77611256 None:intergenic 30.0%
!!! TCTGATCATTGCTACTTTTT+GGG - chr3_3:77611323-77611342 Msa0474700:intron 30.0%
TATGCCCTGATTTATCTTTA+TGG - chr3_3:77611402-77611421 Msa0474700:intron 30.0%
CTAGATATAAAATTGGGAAC+AGG - chr3_3:77611484-77611503 Msa0474700:intron 30.0%
! TTTTATTAGAGGAATAGCCT+AGG - chr3_3:77611607-77611626 Msa0474700:intron 30.0%
GCATATTATATGATATGGGA+GGG + chr3_3:77611658-77611677 None:intergenic 30.0%
AGCATATTATATGATATGGG+AGG + chr3_3:77611659-77611678 None:intergenic 30.0%
!! ATTGTTCTAGAGAGTTCTAA+GGG + chr3_3:77611738-77611757 None:intergenic 30.0%
!! AATTGTTCTAGAGAGTTCTA+AGG + chr3_3:77611739-77611758 None:intergenic 30.0%
AAGAAATGTATGAGATGACA+CGG + chr3_3:77611964-77611983 None:intergenic 30.0%
ATGAATTAGATTATGTGGGT+GGG + chr3_3:77612117-77612136 None:intergenic 30.0%
TATGAATTAGATTATGTGGG+TGG + chr3_3:77612118-77612137 None:intergenic 30.0%
TGATCTACAAAATAATAGGC+AGG + chr3_3:77612151-77612170 None:intergenic 30.0%
GGAATAAAATTAAAGGGGTA+TGG - chr3_3:77612316-77612335 Msa0474700:intron 30.0%
! TTGATAATTCCCTTAACATG+GGG + chr3_3:77612472-77612491 None:intergenic 30.0%
! CATTGATAATTCCCTTAACA+TGG + chr3_3:77612474-77612493 None:intergenic 30.0%
CATGTTAAGGGAATTATCAA+TGG - chr3_3:77612472-77612491 Msa0474700:CDS 30.0%
! AGAATATTTGGGTTTGATGT+TGG - chr3_3:77612691-77612710 Msa0474700:intron 30.0%
! AACTTGTTTATGGTTCAAAC+AGG - chr3_3:77612787-77612806 Msa0474700:intron 30.0%
ACTTGTTTATGGTTCAAACA+GGG - chr3_3:77612788-77612807 Msa0474700:intron 30.0%
GTTTAAATTTCAGCAATCCA+TGG + chr3_3:77612879-77612898 None:intergenic 30.0%
ATAATAGTGCAAGAAACTTC+AGG + chr3_3:77613012-77613031 None:intergenic 30.0%
! TTTTGTATGCAACATCCTTA+TGG - chr3_3:77613238-77613257 Msa0474700:intron 30.0%
GCACATTCCATGTATATAAA+AGG + chr3_3:77613302-77613321 None:intergenic 30.0%
TTTCTTCTGCCTTATAAACA+TGG - chr3_3:77613372-77613391 Msa0474700:intron 30.0%
TTCTTCTGCCTTATAAACAT+GGG - chr3_3:77613373-77613392 Msa0474700:intron 30.0%
!! TTGTTTTGCCCATGTTTATA+AGG + chr3_3:77613384-77613403 None:intergenic 30.0%
CCAAGAACATGAATAACAAA+AGG + chr3_3:77613510-77613529 None:intergenic 30.0%
!!! CCTTTTGTTATTCATGTTCT+TGG - chr3_3:77613507-77613526 Msa0474700:intron 30.0%
! TTGTTATTCATGTTCTTGGT+TGG - chr3_3:77613511-77613530 Msa0474700:intron 30.0%
TTTGTCAAGAAAAGAGAGAT+AGG - chr3_3:77613638-77613657 Msa0474700:intron 30.0%
TGGCAATAGAAGAAAAATCT+TGG + chr3_3:77613703-77613722 None:intergenic 30.0%
! TTTTCTTCTATTGCCATTCT+TGG - chr3_3:77613707-77613726 Msa0474700:CDS 30.0%
TTTCTTCTATTGCCATTCTT+GGG - chr3_3:77613708-77613727 Msa0474700:CDS 30.0%
GATGTTATATAAAGACCATC+AGG + chr3_3:77613891-77613910 None:intergenic 30.0%
GATGGTCTTTATATAACATC+TGG - chr3_3:77613891-77613910 Msa0474700:CDS 30.0%
! TTATATAACATCTGGTTCAG+CGG - chr3_3:77613899-77613918 Msa0474700:CDS 30.0%
! TGAGCTTTTATAGATTGTGA+CGG + chr3_3:77613969-77613988 None:intergenic 30.0%
GATGATATAGATATGAGAAG+AGG + chr3_3:77614032-77614051 None:intergenic 30.0%
ATATCATCTGATCTCAACAT+TGG - chr3_3:77614044-77614063 Msa0474700:intron 30.0%
TATCATCTGATCTCAACATT+GGG - chr3_3:77614045-77614064 Msa0474700:intron 30.0%
TAATATTCAGCACCAACAAA+AGG + chr3_3:77614108-77614127 None:intergenic 30.0%
!!! GTTGGAACTTTGAAATTTTG+TGG - chr3_3:77614175-77614194 Msa0474700:CDS 30.0%
!!! AGGAAAATTTTGATTGGGAA+AGG - chr3_3:77614251-77614270 Msa0474700:exon 30.0%
!!! GATTTTTGGTATAGGCAAGA+CGG + chr3_3:77608897-77608916 None:intergenic 35.0%
TCTTGCCTATACCAAAAATC+AGG - chr3_3:77608897-77608916 Msa0474700:three_prime_UTR 35.0%
!! ATATATGCAGCTTGATGATG+CGG - chr3_3:77609008-77609027 Msa0474700:CDS 35.0%
GATCGAATAGTCCAATTGAT+AGG - chr3_3:77609148-77609167 Msa0474700:CDS 35.0%
GAACGTTCATTCCTATCAAT+TGG + chr3_3:77609162-77609181 None:intergenic 35.0%
TTCGTCAGTTCATACTTCTT+CGG - chr3_3:77609284-77609303 Msa0474700:intron 35.0%
AATGTTGAAGGGAAGGATAA+AGG - chr3_3:77609348-77609367 Msa0474700:intron 35.0%
ATGTTGAAGGGAAGGATAAA+GGG - chr3_3:77609349-77609368 Msa0474700:intron 35.0%
AGCACATAACCTTAAGATAC+AGG + chr3_3:77610312-77610331 None:intergenic 35.0%
TAAGGTTATGTGCTTCTCTT+TGG - chr3_3:77610318-77610337 Msa0474700:CDS 35.0%
!! TTGGTTTTCATATCCGGTAT+TGG - chr3_3:77610337-77610356 Msa0474700:CDS 35.0%
CAACAGTAAAAAGCCAATAC+CGG + chr3_3:77610353-77610372 None:intergenic 35.0%
TTACTGTTGTCTTTGTCTCA+AGG - chr3_3:77610364-77610383 Msa0474700:CDS 35.0%
!! CTTTGTCTCAAGGTTGATTT+TGG - chr3_3:77610374-77610393 Msa0474700:CDS 35.0%
GATGAACTCTTGCGTATTAA+AGG + chr3_3:77610467-77610486 None:intergenic 35.0%
AGTTTCAACAAATCGCAGAA+AGG + chr3_3:77610628-77610647 None:intergenic 35.0%
CGAGGTCAAATGTTATTAAC+AGG - chr3_3:77610746-77610765 Msa0474700:CDS 35.0%
ACCAATCAAGATAGAATGAG+AGG - chr3_3:77610857-77610876 Msa0474700:CDS 35.0%
ACCTCTCATTCTATCTTGAT+TGG + chr3_3:77610861-77610880 None:intergenic 35.0%
! TTTTATGAGACGACCTTTAG+TGG - chr3_3:77611221-77611240 Msa0474700:intron 35.0%
!!! GTCTGATCATTGCTACTTTT+TGG - chr3_3:77611322-77611341 Msa0474700:intron 35.0%
GGCACCATAAAGATAAATCA+GGG + chr3_3:77611409-77611428 None:intergenic 35.0%
TGGCACCATAAAGATAAATC+AGG + chr3_3:77611410-77611429 None:intergenic 35.0%
!! TTATCTTTATGGTGCCACTT+TGG - chr3_3:77611413-77611432 Msa0474700:intron 35.0%
!! TTGTTCTAGAGAGTTCTAAG+GGG + chr3_3:77611737-77611756 None:intergenic 35.0%
TGCTTAATATATGAAGTGGG+AGG - chr3_3:77611804-77611823 Msa0474700:intron 35.0%
GCTTAATATATGAAGTGGGA+GGG - chr3_3:77611805-77611824 Msa0474700:intron 35.0%
CAGAGAGTAGAAGTTGTTAA+AGG + chr3_3:77611867-77611886 None:intergenic 35.0%
TCAGTATATACTGCTGATAG+TGG - chr3_3:77612267-77612286 Msa0474700:intron 35.0%
AGAACGTGTGAAATTCTTAG+AGG - chr3_3:77612441-77612460 Msa0474700:intron 35.0%
!!! ATGGTATTGTTTTTATGCCC+TGG - chr3_3:77612491-77612510 Msa0474700:CDS 35.0%
!!! TGGTATTGTTTTTATGCCCT+GGG - chr3_3:77612492-77612511 Msa0474700:CDS 35.0%
! GAAGACACATGTTTTGTAAC+TGG - chr3_3:77612514-77612533 Msa0474700:CDS 35.0%
! ATAAACAAGTTGAAGTCGAC+CGG + chr3_3:77612778-77612797 None:intergenic 35.0%
ACAGGTGTGAGATAATAGAA+TGG + chr3_3:77613168-77613187 None:intergenic 35.0%
! TCACACCTGTGTCTTTTAAT+TGG - chr3_3:77613178-77613197 Msa0474700:intron 35.0%
TGGAATGTGCTTGAAATAGT+AGG - chr3_3:77613312-77613331 Msa0474700:intron 35.0%
ACTCTCGTCCTTATATTGAA+GGG + chr3_3:77613453-77613472 None:intergenic 35.0%
TACTCTCGTCCTTATATTGA+AGG + chr3_3:77613454-77613473 None:intergenic 35.0%
! GAGAGTATGTTCAATTGTTG+TGG - chr3_3:77613467-77613486 Msa0474700:intron 35.0%
!! ACATAGTGTGCCTTTAAGAT+AGG - chr3_3:77613607-77613626 Msa0474700:intron 35.0%
AAGTGGAAATAGGATCAACA+TGG + chr3_3:77613676-77613695 None:intergenic 35.0%
!! AGAAAAATCTTGGTGTCAAG+TGG + chr3_3:77613693-77613712 None:intergenic 35.0%
! TCAATCAGCTCTGATTAATC+AGG - chr3_3:77613857-77613876 Msa0474700:CDS 35.0%
CAGAACACTTTACTTCATCA+GGG + chr3_3:77614078-77614097 None:intergenic 35.0%
ACAGAACACTTTACTTCATC+AGG + chr3_3:77614079-77614098 None:intergenic 35.0%
!! ACAAGAAAGCGAGGTTTTAG+AGG - chr3_3:77608722-77608741 Msa0474700:three_prime_UTR 40.0%
TCAGAAACAAGGGTTAGGAT+TGG + chr3_3:77608939-77608958 None:intergenic 40.0%
CTGTTACACCGAAGATTTCA+CGG - chr3_3:77609226-77609245 Msa0474700:CDS 40.0%
AACTGACGAAACAGCTACTT+CGG + chr3_3:77609274-77609293 None:intergenic 40.0%
GTTCATACTTCTTCGGTTAG+TGG - chr3_3:77609291-77609310 Msa0474700:intron 40.0%
ATACTTCTTCGGTTAGTGGA+GGG - chr3_3:77609295-77609314 Msa0474700:intron 40.0%
TCAGCAAAATGTTGAAGGGA+AGG - chr3_3:77609341-77609360 Msa0474700:intron 40.0%
CTTATCTCACAGAGTAGAGT+CGG + chr3_3:77609618-77609637 None:intergenic 40.0%
CTACTCTGTGAGATAAGACT+TGG - chr3_3:77609621-77609640 Msa0474700:intron 40.0%
TGTCGAACACTGATACATGT+CGG - chr3_3:77610059-77610078 Msa0474700:intron 40.0%
TCCAGAACAAAAAGAACACC+AGG - chr3_3:77610433-77610452 Msa0474700:CDS 40.0%
! TCCTGGTGTTCTTTTTGTTC+TGG + chr3_3:77610437-77610456 None:intergenic 40.0%
TTGAGATGTGGTTGCTTGAT+TGG + chr3_3:77610508-77610527 None:intergenic 40.0%
GCAAAAAGCTGATCATTAGC+GGG + chr3_3:77610569-77610588 None:intergenic 40.0%
CGCAAAAAGCTGATCATTAG+CGG + chr3_3:77610570-77610589 None:intergenic 40.0%
! TCTTTTCATCTCCCAGCTTT+TGG - chr3_3:77610711-77610730 Msa0474700:intron 40.0%
ATTTCATAAACGCTGGCGAT+TGG - chr3_3:77611180-77611199 Msa0474700:intron 40.0%
ATAAATCAGGGCATACCCTT+TGG + chr3_3:77611397-77611416 None:intergenic 40.0%
!! AGAATAGAAGCACTCCAAAG+TGG + chr3_3:77611430-77611449 None:intergenic 40.0%
! GCACAAGCATAATTTGTCTG+TGG - chr3_3:77611535-77611554 Msa0474700:intron 40.0%
TAAGGGGATAACTAACTGAC+AGG + chr3_3:77611721-77611740 None:intergenic 40.0%
CTTCTTTCCTCTATCACTGA+TGG - chr3_3:77612018-77612037 Msa0474700:intron 40.0%
GAAGAAACCATCAGTGATAG+AGG + chr3_3:77612028-77612047 None:intergenic 40.0%
CCTAAACATCATGTCTACTG+AGG + chr3_3:77612050-77612069 None:intergenic 40.0%
CCTCAGTAGACATGATGTTT+AGG - chr3_3:77612047-77612066 Msa0474700:intron 40.0%
ATCAGTAGAGTTAAGCAGAG+AGG + chr3_3:77612178-77612197 None:intergenic 40.0%
ACAAAACATGTGTCTTCCCA+GGG + chr3_3:77612511-77612530 None:intergenic 40.0%
TACAAAACATGTGTCTTCCC+AGG + chr3_3:77612512-77612531 None:intergenic 40.0%
! GACACATGTTTTGTAACTGG+TGG - chr3_3:77612517-77612536 Msa0474700:CDS 40.0%
GTGATCATGCTGTTGTACTT+TGG - chr3_3:77612542-77612561 Msa0474700:CDS 40.0%
GAATGAAGATTCCTGTGCAA+TGG + chr3_3:77612604-77612623 None:intergenic 40.0%
TCTTCATTCTTCTGCTGTCA+TGG - chr3_3:77612615-77612634 Msa0474700:intron 40.0%
CTTCATTCTTCTGCTGTCAT+GGG - chr3_3:77612616-77612635 Msa0474700:intron 40.0%
AAGCAGATTGTGTTATCTGC+AGG - chr3_3:77612658-77612677 Msa0474700:intron 40.0%
! GGTCGACTTCAACTTGTTTA+TGG - chr3_3:77612777-77612796 Msa0474700:intron 40.0%
! ATTTTCTACAGGCTTTGCCA+TGG - chr3_3:77612859-77612878 Msa0474700:intron 40.0%
TAGTGCAAGAAACTTCAGGT+GGG + chr3_3:77613008-77613027 None:intergenic 40.0%
ATAGTGCAAGAAACTTCAGG+TGG + chr3_3:77613009-77613028 None:intergenic 40.0%
ACCTGTGAACTTCAGTGAAT+TGG - chr3_3:77613081-77613100 Msa0474700:intron 40.0%
TCCAATTCACTGAAGTTCAC+AGG + chr3_3:77613085-77613104 None:intergenic 40.0%
GTGAGATAATAGAATGGTGG+CGG + chr3_3:77613162-77613181 None:intergenic 40.0%
GGTGTGAGATAATAGAATGG+TGG + chr3_3:77613165-77613184 None:intergenic 40.0%
CATGGGCAAAACAAATGAGA+TGG - chr3_3:77613390-77613409 Msa0474700:intron 40.0%
GGCAAAACAAATGAGATGGT+TGG - chr3_3:77613394-77613413 Msa0474700:intron 40.0%
TCTCGTCCTTATATTGAAGG+GGG + chr3_3:77613451-77613470 None:intergenic 40.0%
CTCTCGTCCTTATATTGAAG+GGG + chr3_3:77613452-77613471 None:intergenic 40.0%
!! TCTTGGTGTCAAGTGGAAAT+AGG + chr3_3:77613686-77613705 None:intergenic 40.0%
! GGACAGAACTTCATGCTTTT+GGG - chr3_3:77613811-77613830 Msa0474700:CDS 40.0%
! TTCTGTCTCCATCCTTTTGT+TGG - chr3_3:77614093-77614112 Msa0474700:intron 40.0%
ATTCAGCACCAACAAAAGGA+TGG + chr3_3:77614104-77614123 None:intergenic 40.0%
GGCTACAACGACAAATTAGA+TGG + chr3_3:77614320-77614339 None:intergenic 40.0%
! TAATTTGTCGTTGTAGCCTG+AGG - chr3_3:77614322-77614341 Msa0474700:five_prime_UTR 40.0%
AAAACGTGATGTATCACCTC+AGG + chr3_3:77614341-77614360 None:intergenic 40.0%
! TCTGAAGAGCACGTTGTAAC+GGG + chr3_3:77608703-77608722 None:intergenic 45.0%
! GTCTGAAGAGCACGTTGTAA+CGG + chr3_3:77608704-77608723 None:intergenic 45.0%
ACGGAGATTGTTAACTTCGC+GGG + chr3_3:77608872-77608891 None:intergenic 45.0%
GACGGAGATTGTTAACTTCG+CGG + chr3_3:77608873-77608892 None:intergenic 45.0%
! GAAATCTTCGGTGTAACAGC+AGG + chr3_3:77609225-77609244 None:intergenic 45.0%
ACCGAAGATTTCACGGTCAT+CGG - chr3_3:77609233-77609252 Msa0474700:CDS 45.0%
ATTTCACGGTCATCGGGAAA+AGG - chr3_3:77609240-77609259 Msa0474700:CDS 45.0%
CATACTTCTTCGGTTAGTGG+AGG - chr3_3:77609294-77609313 Msa0474700:intron 45.0%
CACTGACATCAGACACACAT+TGG - chr3_3:77609551-77609570 Msa0474700:intron 45.0%
TCAGACGTCATACACAACAC+TGG - chr3_3:77609908-77609927 Msa0474700:intron 45.0%
GTCGAACACTGATACATGTC+GGG - chr3_3:77610060-77610079 Msa0474700:intron 45.0%
AGCTTTCCAAGCAGCTCTTA+CGG + chr3_3:77610238-77610257 None:intergenic 45.0%
TGGCTGTAGCCTGTATCTTA+AGG - chr3_3:77610300-77610319 Msa0474700:CDS 45.0%
!! TCTTGTGCTGACTTGAGATG+TGG + chr3_3:77610520-77610539 None:intergenic 45.0%
ACATCTCAAGTCAGCACAAG+AGG - chr3_3:77610519-77610538 Msa0474700:CDS 45.0%
GTCAGCACAAGAGGAAATTG+CGG - chr3_3:77610528-77610547 Msa0474700:CDS 45.0%
! ATGATCAGCTTTTTGCGACC+AGG - chr3_3:77610573-77610592 Msa0474700:CDS 45.0%
! GCTTTTTGCGACCAGGTAAT+TGG - chr3_3:77610580-77610599 Msa0474700:CDS 45.0%
! GATAGAGAAGCATACTCACG+AGG + chr3_3:77611110-77611129 None:intergenic 45.0%
! TTGCAGTGCTTTGGATGGAT+TGG - chr3_3:77611350-77611369 Msa0474700:intron 45.0%
!! TGGATGGATTGGTCAACTTC+TGG - chr3_3:77611361-77611380 Msa0474700:intron 45.0%
! TTCTGGAAAGTCCAAGCCAA+AGG - chr3_3:77611378-77611397 Msa0474700:intron 45.0%
TCTGGAAAGTCCAAGCCAAA+GGG - chr3_3:77611379-77611398 Msa0474700:intron 45.0%
GAGAATAGACTGTCAGCAGA+AGG + chr3_3:77611580-77611599 None:intergenic 45.0%
ACTTCTACTCTCTGAATGCG+AGG - chr3_3:77611873-77611892 Msa0474700:intron 45.0%
! ACTCTCTGAATGCGAGGTTT+TGG - chr3_3:77611879-77611898 Msa0474700:intron 45.0%
ATTGTGCGTCCCAAAAACAG+AGG - chr3_3:77612196-77612215 Msa0474700:intron 45.0%
!! TGGCCATCTCCTCTGTTTTT+GGG + chr3_3:77612208-77612227 None:intergenic 45.0%
GATGGCCAGAAGATATAGCT+TGG - chr3_3:77612220-77612239 Msa0474700:intron 45.0%
AGAAGATATAGCTTGGCACC+CGG - chr3_3:77612227-77612246 Msa0474700:intron 45.0%
AAAAGAGCCTGTTTCCTTCC+GGG + chr3_3:77612248-77612267 None:intergenic 45.0%
GAAAAGAGCCTGTTTCCTTC+CGG + chr3_3:77612249-77612268 None:intergenic 45.0%
AGCAGGATGATGAGGACAAA+TGG - chr3_3:77612569-77612588 Msa0474700:CDS 45.0%
AGATTCCTGTGCAATGGTCT+TGG + chr3_3:77612598-77612617 None:intergenic 45.0%
GATTGTGTTATCTGCAGGTG+CGG - chr3_3:77612663-77612682 Msa0474700:intron 45.0%
GTGCGGACAGGAGAATATTT+GGG - chr3_3:77612680-77612699 Msa0474700:intron 45.0%
! TTTGGGTTTGATGTTGGTGC+AGG - chr3_3:77612697-77612716 Msa0474700:intron 45.0%
AAGTTGAAGTCGACCGGATT+GGG + chr3_3:77612772-77612791 None:intergenic 45.0%
TCACAGGTAACTTGAGCAAC+TGG + chr3_3:77613069-77613088 None:intergenic 45.0%
CCACGCAACTACTGAATCAT+GGG + chr3_3:77613420-77613439 None:intergenic 45.0%
CATCCACCCCCTTCAATATA+AGG - chr3_3:77613442-77613461 Msa0474700:intron 45.0%
! CGGACAGAACTTCATGCTTT+TGG - chr3_3:77613810-77613829 Msa0474700:CDS 45.0%
! CAGAACTTCATGCTTTTGGG+TGG - chr3_3:77613814-77613833 Msa0474700:CDS 45.0%
! CAGCTCTGATTAATCAGGCT+TGG - chr3_3:77613862-77613881 Msa0474700:CDS 45.0%
GCTCACCAGAAAAGAGTCTT+TGG - chr3_3:77613984-77614003 Msa0474700:CDS 45.0%
! AGGCTCCAAAGACTCTTTTC+TGG + chr3_3:77613992-77614011 None:intergenic 45.0%
!! AAAGAGTCTTTGGAGCCTTG+TGG - chr3_3:77613994-77614013 Msa0474700:CDS 45.0%
AGGAATAGACTGAAGCCACA+AGG + chr3_3:77614012-77614031 None:intergenic 45.0%
! GGAAAGGCATGCTTAGATGT+TGG - chr3_3:77614267-77614286 Msa0474700:exon 45.0%
!!! AAATATATATTTTTAGAAAA+TGG + chr3_3:77611033-77611052 None:intergenic 5.0%
GCTCTTCAGACAAGAAAGCG+AGG - chr3_3:77608713-77608732 Msa0474700:three_prime_UTR 50.0%
TGGTATAGGCAAGACGGTGA+CGG + chr3_3:77608891-77608910 None:intergenic 50.0%
CCCGATGACCGTGAAATCTT+CGG + chr3_3:77609237-77609256 None:intergenic 50.0%
CCGAAGATTTCACGGTCATC+GGG - chr3_3:77609234-77609253 Msa0474700:CDS 50.0%
GTTCTTCCGTAAGAGCTGCT+TGG - chr3_3:77610229-77610248 Msa0474700:intron 50.0%
GCTGGGAGATGAAAAGAGAC+AGG + chr3_3:77610708-77610727 None:intergenic 50.0%
ATACAACAGAGGCCTCGCAT+AGG + chr3_3:77610966-77610985 None:intergenic 50.0%
!! TTGGGAGTGTTGCAGTGCTT+TGG - chr3_3:77611341-77611360 Msa0474700:intron 50.0%
! GAGTGTTGCAGTGCTTTGGA+TGG - chr3_3:77611345-77611364 Msa0474700:intron 50.0%
TGTCTGTGGTGTACTCCCTA+TGG - chr3_3:77611549-77611568 Msa0474700:intron 50.0%
CAGCAGAAGGAGCAACCATA+GGG + chr3_3:77611567-77611586 None:intergenic 50.0%
TCAGCAGAAGGAGCAACCAT+AGG + chr3_3:77611568-77611587 None:intergenic 50.0%
AGCTCACATAAGCTCGACCT+AGG + chr3_3:77611627-77611646 None:intergenic 50.0%
AGCTCTTGTGAGCTTGAGCT+AGG - chr3_3:77611836-77611855 Msa0474700:intron 50.0%
!! CTGAATGCGAGGTTTTGGTG+TGG - chr3_3:77611884-77611903 Msa0474700:intron 50.0%
CGTCCCAAAAACAGAGGAGA+TGG - chr3_3:77612202-77612221 Msa0474700:intron 50.0%
! CTGGCCATCTCCTCTGTTTT+TGG + chr3_3:77612209-77612228 None:intergenic 50.0%
GGGTGCCAAGCTATATCTTC+TGG + chr3_3:77612228-77612247 None:intergenic 50.0%
AGAGGACAAGCCCCATGTTA+AGG - chr3_3:77612459-77612478 Msa0474700:intron 50.0%
GAGGACAAGCCCCATGTTAA+GGG - chr3_3:77612460-77612479 Msa0474700:intron 50.0%
GGTGCGGACAGGAGAATATT+TGG - chr3_3:77612679-77612698 Msa0474700:intron 50.0%
! CATGAGTGTCGTTCCCAATC+CGG - chr3_3:77612756-77612775 Msa0474700:intron 50.0%
! CAAGTTGAAGTCGACCGGAT+TGG + chr3_3:77612773-77612792 None:intergenic 50.0%
CCCATGATTCAGTAGTTGCG+TGG - chr3_3:77613417-77613436 Msa0474700:intron 50.0%
GCCACGCAACTACTGAATCA+TGG + chr3_3:77613421-77613440 None:intergenic 50.0%
CGTCCTTATATTGAAGGGGG+TGG + chr3_3:77613448-77613467 None:intergenic 50.0%
! AATCAGGCTTGGTCTCCTGA+TGG - chr3_3:77613873-77613892 Msa0474700:CDS 50.0%
!! TCCAAACTGGCTCGTCTTCG+AGG - chr3_3:77609054-77609073 Msa0474700:CDS 55.0%
ACCTCGAAGACGAGCCAGTT+TGG + chr3_3:77609058-77609077 None:intergenic 55.0%
!! TCCCAGCTTTTGGCTGCAGA+AGG - chr3_3:77610721-77610740 Msa0474700:intron 55.0%
GCCTTCTGCAGCCAAAAGCT+GGG + chr3_3:77610725-77610744 None:intergenic 55.0%
TGCCTTCTGCAGCCAAAAGC+TGG + chr3_3:77610726-77610745 None:intergenic 55.0%
!! TTTTGGCTGCAGAAGGCACG+AGG - chr3_3:77610728-77610747 Msa0474700:intron 55.0%
TCAGGGCATACCCTTTGGCT+TGG + chr3_3:77611392-77611411 None:intergenic 55.0%
GATATAGCTTGGCACCCGGA+AGG - chr3_3:77612231-77612250 Msa0474700:intron 55.0%
TGTTGTACTTTGGCGCGAGC+AGG - chr3_3:77612552-77612571 Msa0474700:CDS 55.0%
GGAAGCCAAGACCATTGCAC+AGG - chr3_3:77612590-77612609 Msa0474700:CDS 55.0%
! TCTGCTGTCATGGGTGTTGC+TGG - chr3_3:77612625-77612644 Msa0474700:intron 55.0%
TGTTATCTGCAGGTGCGGAC+AGG - chr3_3:77612668-77612687 Msa0474700:intron 55.0%
! AGGCTATGACGCACTGACGC+AGG - chr3_3:77609884-77609903 Msa0474700:intron 60.0%
CTTGGCACCCGGAAGGAAAC+AGG - chr3_3:77612238-77612257 Msa0474700:intron 60.0%
TTGGCGCGAGCAGGATGATG+AGG - chr3_3:77612561-77612580 Msa0474700:CDS 60.0%
!! TGGTGGCGGTCAAGTAGCGT+GGG + chr3_3:77613148-77613167 None:intergenic 60.0%
!! ATGGTGGCGGTCAAGTAGCG+TGG + chr3_3:77613149-77613168 None:intergenic 60.0%
TCCGCACGACTGCCTATGCG+AGG - chr3_3:77610951-77610970 Msa0474700:intron 65.0%
GCCTCGCATAGGCAGTCGTG+CGG + chr3_3:77610955-77610974 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 77608667 77614395 77608667 ID=Msa0474700;Name=Msa0474700
chr3_3 mRNA 77608667 77614395 77608667 ID=Msa0474700-mRNA-1;Parent=Msa0474700;Name=Msa0474700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=126|1|1|1|1|1|7|307|518
chr3_3 exon 77608667 77609295 77608667 ID=Msa0474700-mRNA-1:exon:20814;Parent=Msa0474700-mRNA-1
chr3_3 exon 77610253 77610623 77610253 ID=Msa0474700-mRNA-1:exon:20813;Parent=Msa0474700-mRNA-1
chr3_3 exon 77610730 77610895 77610730 ID=Msa0474700-mRNA-1:exon:20812;Parent=Msa0474700-mRNA-1
chr3_3 exon 77611662 77611706 77611662 ID=Msa0474700-mRNA-1:exon:20811;Parent=Msa0474700-mRNA-1
chr3_3 exon 77612468 77612624 77612468 ID=Msa0474700-mRNA-1:exon:20810;Parent=Msa0474700-mRNA-1
chr3_3 exon 77613675 77614044 77613675 ID=Msa0474700-mRNA-1:exon:20809;Parent=Msa0474700-mRNA-1
chr3_3 exon 77614144 77614395 77614144 ID=Msa0474700-mRNA-1:exon:20808;Parent=Msa0474700-mRNA-1
chr3_3 five_prime_UTR 77614270 77614395 77614270 ID=Msa0474700-mRNA-1:five_prime_utr;Parent=Msa0474700-mRNA-1
chr3_3 CDS 77614144 77614269 77614144 ID=Msa0474700-mRNA-1:cds;Parent=Msa0474700-mRNA-1
chr3_3 CDS 77613675 77614044 77613675 ID=Msa0474700-mRNA-1:cds;Parent=Msa0474700-mRNA-1
chr3_3 CDS 77612468 77612624 77612468 ID=Msa0474700-mRNA-1:cds;Parent=Msa0474700-mRNA-1
chr3_3 CDS 77611662 77611706 77611662 ID=Msa0474700-mRNA-1:cds;Parent=Msa0474700-mRNA-1
chr3_3 CDS 77610730 77610895 77610730 ID=Msa0474700-mRNA-1:cds;Parent=Msa0474700-mRNA-1
chr3_3 CDS 77610253 77610623 77610253 ID=Msa0474700-mRNA-1:cds;Parent=Msa0474700-mRNA-1
chr3_3 CDS 77608974 77609295 77608974 ID=Msa0474700-mRNA-1:cds;Parent=Msa0474700-mRNA-1
chr3_3 three_prime_UTR 77608667 77608973 77608667 ID=Msa0474700-mRNA-1:three_prime_utr;Parent=Msa0474700-mRNA-1
Gene Sequence

>Msa0474700

ATGGAAGAAGAAGATAACGAAATCACGAGCAGAGAAGAACAAGAAGAAGCATTAGTCGCTTTAATCGAACATCGAACCCGCGAAGTTAACAATCTCCGTCACCGTCTTGCCTATACCAAAAATCAGCTTGATGATGCGGAAAAGAGATTAAAAAATTCAGAATCCAAACTGGCTCGTCTTCGAGGTCAAACAACTAAAAAAATAACTAACTCAGATGATGATGATAATGGAATTGTAGCTGTCAAGAAAGAGCGTAGATCGAATAGTCCAATTGATAGGAATGAACGTTCTTATAAAAGTAATAAGCAATCTAAAACTGAACTTGTTATTCCTGCTGTTACACCGAAGATTTCACGGTCATCGGGAAAAGGTTCTGTTTCCGAAGTAGCTGTTTCGTCAGTTCATACTTCTTCGGTTAGTGGAGGGAAATCAGATAAGTCGAAAATAGATCAGCAAAATGTTGAAGGGAAGGATAAAGGGACAAAAAGAAAATTTGAACAAAAAGAACACCAGGAATTGATTCCTTTAATACGCAAGAGTTCATCAAAGAAATTAGTACACTGCCAATCAAGCAACCACATCTCAAGTCAGCACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCCGCTAATGATCAGCTTTTTGCGACCAGTGCTTTGGATGGATTGGTCAACTTCTGGAAAGTCCAAGCCAAAGGATCATCAGCCTCTCTGCTTAACTCTACTGATTGTGCGTCCCAAAAACAGAGGAGATGGCCAGAAGATATAGCTTGGCACCCGGAAGGAAACAGGCTCTTTTCAGTATATACTGCTGATAGTGGAGACTCACAAATATCAGTTACAAATTGGAATAAAATTAAAGGGGTAGAACGTGTGAAATTCTTAGAGGACAAGCCCCATGTTAAGGGAATTATCAATGGTATTGTTTTTATGCCCTGGGAAGACACATGTTTTGTAACTGGTGGAAGTGATCATGCTGTTGTACTTTGGCGCGAGCAGGATGATGAGGACAAATGGAAGCCAAGACCATTGCACAGGAATCTTCATTCTTCTGCTGTCATGGGTGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTATCTGCAGGTGCGGACAGGAGAATATTTGGGTTTGATGTTGGTGCAGGAAGAGCAGAGTTCACTCATCAGATTGATAGTAAATGCATGAGTGTCGTTCCCAATCCGGTCGACTTCAACTTGTTTATGGTTCAAACAGGGACTCATGAGAAGCAGCTTCGATTATTTGATATTAGATTGAGGCGGACAGAACTTCATGCTTTTGGGTGGAAACAAGAAAGCAGTGAATCTCAATCAGCTCTGATTAATCAGGCTTGGTCTCCTGATGGTCTTTATATAACATCTGGTTCAGCGGATCCTGTGATTCACATATTTGATATAAGATATAATCTTAACAGGCCGTCACAATCTATAAAAGCTCACCAGAAAAGAGTCTTTGGAGCCTTGTGGCTTCAGTCTATTCCTCTTCTCATATCTATATCATCTGATCTCAACATTGGGTTGCACACCCTGATGAAGTAA

Protein sequence

>Msa0474700

MEEEDNEITSREEQEEALVALIEHRTREVNNLRHRLAYTKNQLDDAEKRLKNSESKLARLRGQTTKKITNSDDDDNGIVAVKKERRSNSPIDRNERSYKSNKQSKTELVIPAVTPKISRSSGKGSVSEVAVSSVHTSSVSGGKSDKSKIDQQNVEGKDKGTKRKFEQKEHQELIPLIRKSSSKKLVHCQSSNHISSQHKRKLRSIALCPANDQLFATSALDGLVNFWKVQAKGSSASLLNSTDCASQKQRRWPEDIAWHPEGNRLFSVYTADSGDSQISVTNWNKIKGVERVKFLEDKPHVKGIINGIVFMPWEDTCFVTGGSDHAVVLWREQDDEDKWKPRPLHRNLHSSAVMGVAGMQQKQIVLSAGADRRIFGFDVGAGRAEFTHQIDSKCMSVVPNPVDFNLFMVQTGTHEKQLRLFDIRLRRTELHAFGWKQESSESQSALINQAWSPDGLYITSGSADPVIHIFDIRYNLNRPSQSIKAHQKRVFGALWLQSIPLLISISSDLNIGLHTLMK*