AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0981430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981430 MtrunA17_Chr3g0131621 98.456 518 7 1 1 518 1 517 0.0 1046
Msa0981430 MtrunA17_Chr8g0385711 55.754 504 191 5 12 514 35 507 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981430 AT5G50970.1 61.765 510 172 8 8 516 24 511 0.0 617
Msa0981430 AT5G19920.1 56.983 358 154 0 159 516 298 655 2.91e-147 437

Find 117 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAACTCTTGCGTATTAA+AGG 0.118944 6_4:+20979205 None:intergenic
AGTAAAGAAAAGAATTTATT+TGG 0.151676 6_4:-20975452 Msa0981430:three_prime_UTR
CGGACAGAACTTCATGCTTT+TGG 0.187053 6_4:-20975859 Msa0981430:CDS
TTTATTTGGAACGGTAAATT+AGG 0.206467 6_4:-20975438 Msa0981430:three_prime_UTR
GGTCGACTTCAACTTGTTTA+TGG 0.210939 6_4:-20976892 Msa0981430:CDS
ACAAATTGGAATAAAATTAA+AGG 0.221064 6_4:-20977360 Msa0981430:CDS
GAAAATCATTAATTGCAATT+TGG 0.221881 6_4:-20975306 Msa0981430:three_prime_UTR
GGTGCGGACAGGAGAATATT+TGG 0.221929 6_4:-20976990 Msa0981430:CDS
CACAAATATCAGTTACAAAT+TGG 0.251917 6_4:-20977374 Msa0981430:CDS
TGGATGGATTGGTCAACTTC+TGG 0.282759 6_4:-20978308 Msa0981430:CDS
TCTGCTGTCATGGGTGTTGC+TGG 0.313002 6_4:-20977044 Msa0981430:CDS
TAATGAAATAATCGAGAAAA+TGG 0.315483 6_4:-20980895 Msa0981430:exon
CCCGATGACCGTGAAATCTT+CGG 0.326249 6_4:+20980435 None:intergenic
AAAAGAGCCTGTTTCCTTCC+GGG 0.332486 6_4:+20977424 None:intergenic
CAAATTGGAATAAAATTAAA+GGG 0.340540 6_4:-20977359 Msa0981430:CDS
GCTCACCAGAAAAGAGTCTT+TGG 0.350080 6_4:-20975685 Msa0981430:CDS
AACTTGTTTATGGTTCAAAC+AGG 0.350438 6_4:-20976882 Msa0981430:CDS
ATATAAGATATAATCTTAAC+AGG 0.350592 6_4:-20975726 Msa0981430:CDS
TCTTCATTCTTCTGCTGTCA+TGG 0.353380 6_4:-20977054 Msa0981430:CDS
GAAAAGAGCCTGTTTCCTTC+CGG 0.362118 6_4:+20977423 None:intergenic
GAACGTTCATTCCTATCAAT+TGG 0.370380 6_4:+20980510 None:intergenic
ACCTCGAAGACGAGCCAGTT+TGG 0.373854 6_4:+20980614 None:intergenic
ACAGAACACTTTACTTCATC+AGG 0.377058 6_4:+20975593 None:intergenic
AACTCAGATGATGATGATAA+TGG 0.377955 6_4:-20980570 Msa0981430:CDS
GTTCATACTTCTTCGGTTAG+TGG 0.381037 6_4:-20980378 Msa0981430:CDS
TTGAGATGTGGTTGCTTGAT+TGG 0.389301 6_4:+20979164 None:intergenic
CTTGGCACCCGGAAGGAAAC+AGG 0.393450 6_4:-20977431 Msa0981430:CDS
ACCGAAGATTTCACGGTCAT+CGG 0.397677 6_4:-20980436 Msa0981430:CDS
TTGGGAGTGTTGCAGTGCTT+TGG 0.401238 6_4:-20978328 Msa0981430:intron
AGAGGACAAGCCCCATGTTA+AGG 0.404493 6_4:-20977210 Msa0981430:CDS
GTGCGGACAGGAGAATATTT+GGG 0.407971 6_4:-20976989 Msa0981430:CDS
GGCTACAACGACAAATTAGA+TGG 0.408918 6_4:+20975352 None:intergenic
GATCGAATAGTCCAATTGAT+AGG 0.414202 6_4:-20980521 Msa0981430:CDS
AAGTTGAAGTCGACCGGATT+GGG 0.417117 6_4:+20976900 None:intergenic
TCAATCAGCTCTGATTAATC+AGG 0.417753 6_4:-20975812 Msa0981430:CDS
TTCGTCAGTTCATACTTCTT+CGG 0.422150 6_4:-20980385 Msa0981430:CDS
GAGGACAAGCCCCATGTTAA+GGG 0.422318 6_4:-20977209 Msa0981430:CDS
GATGGTCTTTATATAACATC+TGG 0.422463 6_4:-20975778 Msa0981430:CDS
GTATTAAAGGAATCAATTCC+TGG 0.423259 6_4:+20979218 None:intergenic
ATGTTGAAGGGAAGGATAAA+GGG 0.424142 6_4:-20980320 Msa0981430:CDS
AATGTTGAAGGGAAGGATAA+AGG 0.425677 6_4:-20980321 Msa0981430:CDS
TCTGAAGAGCACGTTGTAAC+GGG 0.428339 6_4:+20980969 None:intergenic
CTTCATTCTTCTGCTGTCAT+GGG 0.430235 6_4:-20977053 Msa0981430:CDS
CTGTTACACCGAAGATTTCA+CGG 0.435935 6_4:-20980443 Msa0981430:CDS
AGATTCCTGTGCAATGGTCT+TGG 0.436295 6_4:+20977074 None:intergenic
GGGTGCCAAGCTATATCTTC+TGG 0.437830 6_4:+20977444 None:intergenic
CCGAAGATTTCACGGTCATC+GGG 0.440560 6_4:-20980435 Msa0981430:CDS
TCCAAACTGGCTCGTCTTCG+AGG 0.450756 6_4:-20980615 Msa0981430:CDS
TCAGTATATACTGCTGATAG+TGG 0.456056 6_4:-20977402 Msa0981430:CDS
CATTGATAATTCCCTTAACA+TGG 0.459099 6_4:+20977198 None:intergenic
TTGCAGTGCTTTGGATGGAT+TGG 0.459655 6_4:-20978319 Msa0981430:intron
CATGAGTGTCGTTCCCAATC+CGG 0.470143 6_4:-20976913 Msa0981430:CDS
CAAGTTGAAGTCGACCGGAT+TGG 0.472849 6_4:+20976899 None:intergenic
TCAGGGCATACCCTTTGGCT+TGG 0.473021 6_4:+20978280 None:intergenic
ATTTCACGGTCATCGGGAAA+AGG 0.477985 6_4:-20980429 Msa0981430:CDS
AGCAGGATGATGAGGACAAA+TGG 0.478363 6_4:-20977100 Msa0981430:CDS
ATAGATCAGCAAAATGTTGA+AGG 0.478843 6_4:-20980333 Msa0981430:CDS
GATGTTATATAAAGACCATC+AGG 0.485540 6_4:+20975781 None:intergenic
TAATATTCAGCACCAACAAA+AGG 0.490460 6_4:+20975564 None:intergenic
AGAAAAGAATTTATTTGGAA+CGG 0.493523 6_4:-20975447 Msa0981430:three_prime_UTR
TGTTATCTGCAGGTGCGGAC+AGG 0.496576 6_4:-20977001 Msa0981430:CDS
CAGCTCTGATTAATCAGGCT+TGG 0.504417 6_4:-20975807 Msa0981430:CDS
TATCATCTGATCTCAACATT+GGG 0.505917 6_4:-20975624 Msa0981430:CDS
ATATCATCTGATCTCAACAT+TGG 0.509338 6_4:-20975625 Msa0981430:CDS
GAGTGTTGCAGTGCTTTGGA+TGG 0.517229 6_4:-20978324 Msa0981430:intron
TACAAAACATGTGTCTTCCC+AGG 0.519960 6_4:+20977160 None:intergenic
CATGTTAAGGGAATTATCAA+TGG 0.520231 6_4:-20977197 Msa0981430:CDS
GTGATCATGCTGTTGTACTT+TGG 0.526531 6_4:-20977127 Msa0981430:CDS
TTTGGGTTTGATGTTGGTGC+AGG 0.530165 6_4:-20976972 Msa0981430:CDS
GAAATCTTCGGTGTAACAGC+AGG 0.530314 6_4:+20980447 None:intergenic
AACTGACGAAACAGCTACTT+CGG 0.530754 6_4:+20980398 None:intergenic
TGTTGTACTTTGGCGCGAGC+AGG 0.531627 6_4:-20977117 Msa0981430:CDS
GACGGAGATTGTTAACTTCG+CGG 0.531658 6_4:+20980799 None:intergenic
AAGCAGATTGTGTTATCTGC+AGG 0.531813 6_4:-20977011 Msa0981430:CDS
ATATCAAATATGTGAATCAC+AGG 0.533530 6_4:+20975745 None:intergenic
AGAATATTTGGGTTTGATGT+TGG 0.536408 6_4:-20976978 Msa0981430:CDS
GTCTGAAGAGCACGTTGTAA+CGG 0.537155 6_4:+20980968 None:intergenic
ACGGAGATTGTTAACTTCGC+GGG 0.537563 6_4:+20980800 None:intergenic
ACATCTCAAGTCAGCACAAG+AGG 0.537650 6_4:-20979150 Msa0981430:CDS
AGAACGTGTGAAATTCTTAG+AGG 0.541392 6_4:-20977228 Msa0981430:CDS
GGAAAGGCATGCTTAGATGT+TGG 0.543340 6_4:-20975402 Msa0981430:three_prime_UTR
TGGTATAGGCAAGACGGTGA+CGG 0.548190 6_4:+20980781 None:intergenic
GATGATATAGATATGAGAAG+AGG 0.551317 6_4:+20975640 None:intergenic
AAAACGTGATGTATCACCTC+AGG 0.551500 6_4:+20975331 None:intergenic
TCTTGTGCTGACTTGAGATG+TGG 0.551926 6_4:+20979152 None:intergenic
TTCTGGAAAGTCCAAGCCAA+AGG 0.557141 6_4:-20978291 Msa0981430:CDS
ATTGATAATTCCCTTAACAT+GGG 0.559536 6_4:+20977199 None:intergenic
TCAGCAAAATGTTGAAGGGA+AGG 0.560402 6_4:-20980328 Msa0981430:CDS
GATTATTTGATATTAGATTG+AGG 0.569773 6_4:-20975882 Msa0981430:CDS
ATAAACAAGTTGAAGTCGAC+CGG 0.571664 6_4:+20976894 None:intergenic
GAATGAAGATTCCTGTGCAA+TGG 0.573307 6_4:+20977068 None:intergenic
TCTGGAAAGTCCAAGCCAAA+GGG 0.573565 6_4:-20978290 Msa0981430:intron
ATTCAGCACCAACAAAAGGA+TGG 0.578426 6_4:+20975568 None:intergenic
AATCAGGCTTGGTCTCCTGA+TGG 0.579710 6_4:-20975796 Msa0981430:CDS
ATACTTCTTCGGTTAGTGGA+GGG 0.580151 6_4:-20980374 Msa0981430:CDS
CATACTTCTTCGGTTAGTGG+AGG 0.583662 6_4:-20980375 Msa0981430:CDS
GATGGCCAGAAGATATAGCT+TGG 0.587820 6_4:-20977449 Msa0981430:CDS
AAAGAGTCTTTGGAGCCTTG+TGG 0.589884 6_4:-20975675 Msa0981430:CDS
TTGATAATTCCCTTAACATG+GGG 0.590416 6_4:+20977200 None:intergenic
AAATTGGAATAAAATTAAAG+GGG 0.598095 6_4:-20977358 Msa0981430:intron
GGAAGCCAAGACCATTGCAC+AGG 0.600850 6_4:-20977079 Msa0981430:CDS
TAGATCAGCAAAATGTTGAA+GGG 0.602211 6_4:-20980332 Msa0981430:CDS
TAATTTGTCGTTGTAGCCTG+AGG 0.603955 6_4:-20975347 Msa0981430:three_prime_UTR
TTATATAACATCTGGTTCAG+CGG 0.612784 6_4:-20975770 Msa0981430:CDS
GATATAGCTTGGCACCCGGA+AGG 0.613083 6_4:-20977438 Msa0981430:CDS
ATATATGCAGCTTGATGATG+CGG 0.615595 6_4:-20980661 Msa0981430:intron
TTGGCGCGAGCAGGATGATG+AGG 0.619686 6_4:-20977108 Msa0981430:CDS
AGAAGATATAGCTTGGCACC+CGG 0.619978 6_4:-20977442 Msa0981430:CDS
CAGAACACTTTACTTCATCA+GGG 0.627232 6_4:+20975594 None:intergenic
ACAAAACATGTGTCTTCCCA+GGG 0.629446 6_4:+20977161 None:intergenic
GATTGTGTTATCTGCAGGTG+CGG 0.637682 6_4:-20977006 Msa0981430:CDS
ACTTGTTTATGGTTCAAACA+GGG 0.647131 6_4:-20976881 Msa0981430:intron
AGGAATAGACTGAAGCCACA+AGG 0.650340 6_4:+20975660 None:intergenic
GTCAGCACAAGAGGAAATTG+CGG 0.652458 6_4:-20979141 Msa0981430:CDS
ATCAGTAGAGTTAAGCAGAG+AGG 0.678641 6_4:+20977494 None:intergenic
GCTCTTCAGACAAGAAAGCG+AGG 0.696860 6_4:-20980956 Msa0981430:five_prime_UTR
TATTTGATATTAGATTGAGG+CGG 0.699704 6_4:-20975879 Msa0981430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATATTCAGAAACAA+GGG + chr6_4:20975578-20975597 None:intergenic 15.0%
!! AATTTAAATATTCAGAAACA+AGG + chr6_4:20975579-20975598 None:intergenic 15.0%
!! TTAATTAATTTCACAAACTT+AGG + chr6_4:20975618-20975637 None:intergenic 15.0%
!!! TTTTTGTTTATCTCTTTATT+AGG - chr6_4:20976070-20976089 Msa0981430:intron 15.0%
!!! ATTGGTAATAATGTAAATAA+TGG - chr6_4:20976198-20976217 Msa0981430:intron 15.0%
!! ATTTATAGATTATAGGTATT+AGG - chr6_4:20976364-20976383 Msa0981430:intron 15.0%
!!! TTTTTATTTGTCTATAGATT+AGG - chr6_4:20976407-20976426 Msa0981430:intron 15.0%
!! CTGGTAATAATTTAAAAAAA+TGG - chr6_4:20976556-20976575 Msa0981430:intron 15.0%
!!! TTCAAATGTAAATTCTAAAA+TGG - chr6_4:20977509-20977528 Msa0981430:intron 15.0%
!! TAGTCAAAATACAATTAAAT+GGG + chr6_4:20978620-20978639 None:intergenic 15.0%
!! ATAGTCAAAATACAATTAAA+TGG + chr6_4:20978621-20978640 None:intergenic 15.0%
!! AAATATGAATTAGATTATGT+GGG + chr6_4:20978750-20978769 None:intergenic 15.0%
!! AAAATATGAATTAGATTATG+TGG + chr6_4:20978751-20978770 None:intergenic 15.0%
!! ACAAATTGGAATAAAATTAA+AGG - chr6_4:20978938-20978957 Msa0981430:intron 15.0%
!! CAAATTGGAATAAAATTAAA+GGG - chr6_4:20978939-20978958 Msa0981430:intron 15.0%
!! AAATTGGAATAAAATTAAAG+GGG - chr6_4:20978940-20978959 Msa0981430:intron 15.0%
!!! AAAGTTTAAATTTTATGTCA+GGG + chr6_4:20978984-20979003 None:intergenic 15.0%
!! AAAATTTAAACTTTGGATTT+AGG - chr6_4:20978990-20979009 Msa0981430:intron 15.0%
!! AATCAATATTATTATCAAGT+AGG + chr6_4:20980187-20980206 None:intergenic 15.0%
!! ATATAAGATATAATCTTAAC+AGG - chr6_4:20980572-20980591 Msa0981430:CDS 15.0%
!! AGTAAAGAAAAGAATTTATT+TGG - chr6_4:20980846-20980865 Msa0981430:CDS 15.0%
!!! TAAATTAGGAAAATTTTGAT+TGG - chr6_4:20980874-20980893 Msa0981430:CDS 15.0%
!!! AAATTAGGAAAATTTTGATT+GGG - chr6_4:20980875-20980894 Msa0981430:CDS 15.0%
!! TAATGAAATAATCGAGAAAA+TGG - chr6_4:20975403-20975422 Msa0981430:three_prime_UTR 20.0%
!!! GATATTCATTTATTGACTAT+AGG - chr6_4:20976021-20976040 Msa0981430:intron 20.0%
!!! ATTTATTGACTATAGGTATT+AGG - chr6_4:20976028-20976047 Msa0981430:intron 20.0%
!! GACATTCATTTATAGATTAT+AGG - chr6_4:20976357-20976376 Msa0981430:intron 20.0%
!!! GTTTTTGAAAAATTGAAATG+TGG - chr6_4:20976790-20976809 Msa0981430:intron 20.0%
!!! TGTATATTTAGTTGGTATAT+TGG - chr6_4:20976909-20976928 Msa0981430:CDS 20.0%
!! ACTCGTTAATAATGATTAAT+AGG - chr6_4:20977279-20977298 Msa0981430:intron 20.0%
!! AATATGATGAATCAATATCT+AGG - chr6_4:20977426-20977445 Msa0981430:CDS 20.0%
!!! ATATCTAGGCTTATAATTTT+AGG - chr6_4:20977440-20977459 Msa0981430:CDS 20.0%
!!! TATCTAGGCTTATAATTTTA+GGG - chr6_4:20977441-20977460 Msa0981430:CDS 20.0%
!! AATATAAGCTTAAACCAAAA+CGG + chr6_4:20977544-20977563 None:intergenic 20.0%
!!! TTATTTTATTTCATAAACGC+TGG - chr6_4:20977802-20977821 Msa0981430:intron 20.0%
!!! TCTTTTGTAATATATGTTTC+TGG - chr6_4:20977902-20977921 Msa0981430:intron 20.0%
!! AGATATGCTAGATATAAAAT+TGG - chr6_4:20978106-20978125 Msa0981430:intron 20.0%
!! GATATGCTAGATATAAAATT+GGG - chr6_4:20978107-20978126 Msa0981430:intron 20.0%
!!! TCTCTATCAATTTTTATTAG+AGG - chr6_4:20978225-20978244 Msa0981430:intron 20.0%
!! ACTTGAAAAAACAAACAAAA+TGG + chr6_4:20978561-20978580 None:intergenic 20.0%
!!! CAAAGTTTAAATTTTATGTC+AGG + chr6_4:20978985-20979004 None:intergenic 20.0%
!! CTGACATAAAATTTAAACTT+TGG - chr6_4:20978983-20979002 Msa0981430:intron 20.0%
!! AAAATTTATATGCAATTGAC+AGG - chr6_4:20979046-20979065 Msa0981430:intron 20.0%
!! TGTAGAAAATAAAAGCAAAA+AGG + chr6_4:20979478-20979497 None:intergenic 20.0%
!!! TTTTTGCTTTTATTTTCTAC+AGG - chr6_4:20979477-20979496 Msa0981430:intron 20.0%
!!! ATTGGAAACAAAAAGAATTT+TGG - chr6_4:20979728-20979747 Msa0981430:intron 20.0%
!!! TGTCTTTTAATTGGAAAAAA+TGG - chr6_4:20979816-20979835 Msa0981430:intron 20.0%
!!! CAATAAAAATTTTCACCATA+AGG + chr6_4:20979885-20979904 None:intergenic 20.0%
!! GATTATTTGATATTAGATTG+AGG - chr6_4:20980416-20980435 Msa0981430:CDS 20.0%
!!! GAAGAAATATTGATTTTAGT+TGG - chr6_4:20980786-20980805 Msa0981430:CDS 20.0%
!! AGAAAAGAATTTATTTGGAA+CGG - chr6_4:20980851-20980870 Msa0981430:CDS 20.0%
!! GAAAATCATTAATTGCAATT+TGG - chr6_4:20980992-20981011 Msa0981430:five_prime_UTR 20.0%
! AAAAAATTCAGAATCCAAAC+TGG - chr6_4:20975670-20975689 Msa0981430:CDS 25.0%
! AAAGGGACAAAAAGAAAATT+TGG - chr6_4:20975995-20976014 Msa0981430:intron 25.0%
!!! TCTCTTTATTAGGTTTTGTT+TGG - chr6_4:20976080-20976099 Msa0981430:intron 25.0%
! CTTATAAGAACAATCTTACT+AGG + chr6_4:20976146-20976165 None:intergenic 25.0%
!!! TCTATAGATTAGGTTTTGTT+TGG - chr6_4:20976417-20976436 Msa0981430:intron 25.0%
! ACAATAGAGTCATTTAAACT+GGG + chr6_4:20976468-20976487 None:intergenic 25.0%
! AACAATAGAGTCATTTAAAC+TGG + chr6_4:20976469-20976488 None:intergenic 25.0%
!!! CTCAGTAAGTATGTTTTTAT+AGG - chr6_4:20976493-20976512 Msa0981430:intron 25.0%
! AAGAAAATAATCCAATTACC+TGG + chr6_4:20977223-20977242 None:intergenic 25.0%
! GATTGGTAAACTTTATAAGT+TGG + chr6_4:20977473-20977492 None:intergenic 25.0%
! TATAAAAGAAAGTTGTAGCT+AGG - chr6_4:20977695-20977714 Msa0981430:intron 25.0%
! TAGATATAAAATTGGGAACA+GGG - chr6_4:20978114-20978133 Msa0981430:intron 25.0%
! GCAAGCATATTATATGATAT+GGG + chr6_4:20978291-20978310 None:intergenic 25.0%
!! AGTTACTTTGTTACAACTAT+AGG + chr6_4:20978322-20978341 None:intergenic 25.0%
! AGATTGTTAGTTACTACTAT+AGG - chr6_4:20978397-20978416 Msa0981430:intron 25.0%
! TACATGCTTAATATATGAAG+TGG - chr6_4:20978429-20978448 Msa0981430:intron 25.0%
! ACATGCTTAATATATGAAGT+GGG - chr6_4:20978430-20978449 Msa0981430:intron 25.0%
! CTGATGATCTACAAAATAAT+AGG + chr6_4:20978784-20978803 None:intergenic 25.0%
! CACAAATATCAGTTACAAAT+TGG - chr6_4:20978924-20978943 Msa0981430:intron 25.0%
!!! TGGATTTAGGTTTCTTTTAT+TGG - chr6_4:20979003-20979022 Msa0981430:intron 25.0%
!! ATTGATAATTCCCTTAACAT+GGG + chr6_4:20979102-20979121 None:intergenic 25.0%
! AGCAAAAAGGTTTAACAAAT+GGG + chr6_4:20979465-20979484 None:intergenic 25.0%
! AAGCAAAAAGGTTTAACAAA+TGG + chr6_4:20979466-20979485 None:intergenic 25.0%
!!! TGTCTCGTTTTTTTTGTTTT+AGG - chr6_4:20979553-20979572 Msa0981430:intron 25.0%
!!! GTCTCGTTTTTTTTGTTTTA+GGG - chr6_4:20979554-20979573 Msa0981430:intron 25.0%
!! TTTTTCCAATTAAAAGACAC+AGG + chr6_4:20979815-20979834 None:intergenic 25.0%
! AAAAAATGGAATCTCTATGA+AGG - chr6_4:20979830-20979849 Msa0981430:intron 25.0%
! AAAAATGGAATCTCTATGAA+GGG - chr6_4:20979831-20979850 Msa0981430:intron 25.0%
!! TCCTTTTCCTTTTATATACA+TGG - chr6_4:20979921-20979940 Msa0981430:intron 25.0%
! TCCATGTATATAAAAGGAAA+AGG + chr6_4:20979925-20979944 None:intergenic 25.0%
!!! ATGTAGTTGTCTTTTTTATG+TGG - chr6_4:20979964-20979983 Msa0981430:intron 25.0%
!!! TTTTTTATGTGGATGACATT+TGG - chr6_4:20979975-20979994 Msa0981430:intron 25.0%
!! TTTTTATGTGGATGACATTT+GGG - chr6_4:20979976-20979995 Msa0981430:intron 25.0%
! CAAGAACATGAATAACAAAA+GGG + chr6_4:20980138-20980157 None:intergenic 25.0%
! TTCTATTCTACATTGAATTC+AGG - chr6_4:20980213-20980232 Msa0981430:intron 25.0%
! AAAGTATGTTCCTATCTTAA+AGG + chr6_4:20980249-20980268 None:intergenic 25.0%
! AACTAAATAATACCCAAGAA+TGG + chr6_4:20980352-20980371 None:intergenic 25.0%
!!! TAACTACTTTTCTTTCTATC+AGG - chr6_4:20980374-20980393 Msa0981430:CDS 25.0%
! TATTTGATATTAGATTGAGG+CGG - chr6_4:20980419-20980438 Msa0981430:CDS 25.0%
! ATATCAAATATGTGAATCAC+AGG + chr6_4:20980556-20980575 None:intergenic 25.0%
!! ATGTTGCATCAAATTTTTGT+AGG - chr6_4:20980764-20980783 Msa0981430:intron 25.0%
!!! TTGGAACTTTGAAATTTTGT+GGG - chr6_4:20980805-20980824 Msa0981430:CDS 25.0%
!! TTTATTTGGAACGGTAAATT+AGG - chr6_4:20980860-20980879 Msa0981430:CDS 25.0%
AGAATTGAAAAAGACATTGG+CGG - chr6_4:20975298-20975317 Msa0981430:three_prime_UTR 30.0%
!!! AATGACCTGATTTTTGGTAT+AGG + chr6_4:20975534-20975553 None:intergenic 30.0%
! GAAGAAAATGACCTGATTTT+TGG + chr6_4:20975540-20975559 None:intergenic 30.0%
AATATTCAGAAACAAGGGTT+AGG + chr6_4:20975573-20975592 None:intergenic 30.0%
! AACTCAGATGATGATGATAA+TGG - chr6_4:20975728-20975747 Msa0981430:CDS 30.0%
ATAGATCAGCAAAATGTTGA+AGG - chr6_4:20975965-20975984 Msa0981430:intron 30.0%
TAGATCAGCAAAATGTTGAA+GGG - chr6_4:20975966-20975985 Msa0981430:intron 30.0%
!!! GTTTTGTTTGGATTAGTTTC+TGG - chr6_4:20976092-20976111 Msa0981430:intron 30.0%
ATAACTAACCCTACTTAACT+AGG - chr6_4:20976598-20976617 Msa0981430:intron 30.0%
ACGAATTACCTAGTTAAGTA+GGG + chr6_4:20976609-20976628 None:intergenic 30.0%
AACGAATTACCTAGTTAAGT+AGG + chr6_4:20976610-20976629 None:intergenic 30.0%
AAAGCTTATATGAACTGAAC+TGG - chr6_4:20976881-20976900 Msa0981430:intron 30.0%
TGGCTCTTTGTATATTTAGT+TGG - chr6_4:20976901-20976920 Msa0981430:CDS 30.0%
!!! TTCTCTTTGGTTTTCATATC+CGG - chr6_4:20976960-20976979 Msa0981430:CDS 30.0%
GTATTAAAGGAATCAATTCC+TGG + chr6_4:20977083-20977102 None:intergenic 30.0%
GAGGTCAAATGTTATTAACA+GGG - chr6_4:20977376-20977395 Msa0981430:CDS 30.0%
!!! AGGCTTATAATTTTAGGGTA+TGG - chr6_4:20977446-20977465 Msa0981430:CDS 30.0%
!!! GGCTTATAATTTTAGGGTAT+GGG - chr6_4:20977447-20977466 Msa0981430:CDS 30.0%
! AATGGAAGTTTTTACCGTTT+TGG - chr6_4:20977527-20977546 Msa0981430:intron 30.0%
AAGAGATATTCATACAACAG+AGG + chr6_4:20977606-20977625 None:intergenic 30.0%
GTTATTGTTCAAACCACTAA+AGG + chr6_4:20977866-20977885 None:intergenic 30.0%
!!! TCTGATCATTGCTACTTTTT+GGG - chr6_4:20977952-20977971 Msa0981430:intron 30.0%
TATGCCCTGATTTATCTTTA+TGG - chr6_4:20978031-20978050 Msa0981430:intron 30.0%
CTAGATATAAAATTGGGAAC+AGG - chr6_4:20978113-20978132 Msa0981430:intron 30.0%
! TTTTATTAGAGGAATAGCCT+AGG - chr6_4:20978236-20978255 Msa0981430:intron 30.0%
GCATATTATATGATATGGGA+GGG + chr6_4:20978287-20978306 None:intergenic 30.0%
AGCATATTATATGATATGGG+AGG + chr6_4:20978288-20978307 None:intergenic 30.0%
GGCAAGCATATTATATGATA+TGG + chr6_4:20978292-20978311 None:intergenic 30.0%
!! ATTGTTCTAGAGAGTTCTAA+GGG + chr6_4:20978367-20978386 None:intergenic 30.0%
!! AATTGTTCTAGAGAGTTCTA+AGG + chr6_4:20978368-20978387 None:intergenic 30.0%
AAGAAATGTATGAGATGACA+CGG + chr6_4:20978593-20978612 None:intergenic 30.0%
ATGAATTAGATTATGTGGGT+GGG + chr6_4:20978746-20978765 None:intergenic 30.0%
TATGAATTAGATTATGTGGG+TGG + chr6_4:20978747-20978766 None:intergenic 30.0%
TGATCTACAAAATAATAGGC+AGG + chr6_4:20978780-20978799 None:intergenic 30.0%
GGAATAAAATTAAAGGGGTA+TGG - chr6_4:20978945-20978964 Msa0981430:intron 30.0%
! TTGATAATTCCCTTAACATG+GGG + chr6_4:20979101-20979120 None:intergenic 30.0%
! CATTGATAATTCCCTTAACA+TGG + chr6_4:20979103-20979122 None:intergenic 30.0%
CATGTTAAGGGAATTATCAA+TGG - chr6_4:20979101-20979120 Msa0981430:CDS 30.0%
! AGAATATTTGGGTTTGATGT+TGG - chr6_4:20979320-20979339 Msa0981430:intron 30.0%
! AACTTGTTTATGGTTCAAAC+AGG - chr6_4:20979416-20979435 Msa0981430:intron 30.0%
ACTTGTTTATGGTTCAAACA+GGG - chr6_4:20979417-20979436 Msa0981430:intron 30.0%
GTTTAAATTTCAGCAATCCA+TGG + chr6_4:20979508-20979527 None:intergenic 30.0%
ATAATAGTGCAAGAAACTTC+AGG + chr6_4:20979641-20979660 None:intergenic 30.0%
! TTTTGTATGCAACATCCTTA+TGG - chr6_4:20979867-20979886 Msa0981430:intron 30.0%
GCACATTCCATGTATATAAA+AGG + chr6_4:20979931-20979950 None:intergenic 30.0%
TTTCTTCTGCCTTATAAACA+TGG - chr6_4:20980001-20980020 Msa0981430:intron 30.0%
TTCTTCTGCCTTATAAACAT+GGG - chr6_4:20980002-20980021 Msa0981430:intron 30.0%
!! TTGTTTTGCCCATGTTTATA+AGG + chr6_4:20980013-20980032 None:intergenic 30.0%
CCAAGAACATGAATAACAAA+AGG + chr6_4:20980139-20980158 None:intergenic 30.0%
!!! CCTTTTGTTATTCATGTTCT+TGG - chr6_4:20980136-20980155 Msa0981430:intron 30.0%
! TTGTTATTCATGTTCTTGGT+TGG - chr6_4:20980140-20980159 Msa0981430:intron 30.0%
TTTGTCAAGAAAAGAGAGAT+AGG - chr6_4:20980267-20980286 Msa0981430:intron 30.0%
TGGCAATAGAAGAAAAATCT+TGG + chr6_4:20980332-20980351 None:intergenic 30.0%
! TTTTCTTCTATTGCCATTCT+TGG - chr6_4:20980336-20980355 Msa0981430:CDS 30.0%
TTTCTTCTATTGCCATTCTT+GGG - chr6_4:20980337-20980356 Msa0981430:CDS 30.0%
GATGTTATATAAAGACCATC+AGG + chr6_4:20980520-20980539 None:intergenic 30.0%
GATGGTCTTTATATAACATC+TGG - chr6_4:20980520-20980539 Msa0981430:CDS 30.0%
! TTATATAACATCTGGTTCAG+CGG - chr6_4:20980528-20980547 Msa0981430:CDS 30.0%
! TGAGCTTTTATAGATTGTGA+CGG + chr6_4:20980598-20980617 None:intergenic 30.0%
GATGATATAGATATGAGAAG+AGG + chr6_4:20980661-20980680 None:intergenic 30.0%
ATATCATCTGATCTCAACAT+TGG - chr6_4:20980673-20980692 Msa0981430:intron 30.0%
TATCATCTGATCTCAACATT+GGG - chr6_4:20980674-20980693 Msa0981430:intron 30.0%
TAATATTCAGCACCAACAAA+AGG + chr6_4:20980737-20980756 None:intergenic 30.0%
!!! GTTGGAACTTTGAAATTTTG+TGG - chr6_4:20980804-20980823 Msa0981430:CDS 30.0%
!!! AGGAAAATTTTGATTGGGAA+AGG - chr6_4:20980880-20980899 Msa0981430:exon 30.0%
!!! GATTTTTGGTATAGGCAAGA+CGG + chr6_4:20975526-20975545 None:intergenic 35.0%
TCTTGCCTATACCAAAAATC+AGG - chr6_4:20975526-20975545 Msa0981430:three_prime_UTR 35.0%
!! ATATATGCAGCTTGATGATG+CGG - chr6_4:20975637-20975656 Msa0981430:CDS 35.0%
GATCGAATAGTCCAATTGAT+AGG - chr6_4:20975777-20975796 Msa0981430:CDS 35.0%
GAACGTTCATTCCTATCAAT+TGG + chr6_4:20975791-20975810 None:intergenic 35.0%
TTCGTCAGTTCATACTTCTT+CGG - chr6_4:20975913-20975932 Msa0981430:intron 35.0%
AATGTTGAAGGGAAGGATAA+AGG - chr6_4:20975977-20975996 Msa0981430:intron 35.0%
ATGTTGAAGGGAAGGATAAA+GGG - chr6_4:20975978-20975997 Msa0981430:intron 35.0%
AGCACATAACCTTAAGATAC+AGG + chr6_4:20976941-20976960 None:intergenic 35.0%
TAAGGTTATGTGCTTCTCTT+TGG - chr6_4:20976947-20976966 Msa0981430:CDS 35.0%
!! TTGGTTTTCATATCCGGTAT+TGG - chr6_4:20976966-20976985 Msa0981430:CDS 35.0%
CAACAGTAAAAAGCCAATAC+CGG + chr6_4:20976982-20977001 None:intergenic 35.0%
TTACTGTTGTCTTTGTCTCA+AGG - chr6_4:20976993-20977012 Msa0981430:CDS 35.0%
!! CTTTGTCTCAAGGTTGATTT+TGG - chr6_4:20977003-20977022 Msa0981430:CDS 35.0%
GATGAACTCTTGCGTATTAA+AGG + chr6_4:20977096-20977115 None:intergenic 35.0%
AGTTTCAACAAATCGCAGAA+AGG + chr6_4:20977257-20977276 None:intergenic 35.0%
CGAGGTCAAATGTTATTAAC+AGG - chr6_4:20977375-20977394 Msa0981430:CDS 35.0%
ACCAATCAAGATAGAATGAG+AGG - chr6_4:20977486-20977505 Msa0981430:CDS 35.0%
ACCTCTCATTCTATCTTGAT+TGG + chr6_4:20977490-20977509 None:intergenic 35.0%
! TTTTATGAGACGACCTTTAG+TGG - chr6_4:20977850-20977869 Msa0981430:intron 35.0%
!!! GTCTGATCATTGCTACTTTT+TGG - chr6_4:20977951-20977970 Msa0981430:intron 35.0%
GGCACCATAAAGATAAATCA+GGG + chr6_4:20978038-20978057 None:intergenic 35.0%
TGGCACCATAAAGATAAATC+AGG + chr6_4:20978039-20978058 None:intergenic 35.0%
!! TTATCTTTATGGTGCCACTT+TGG - chr6_4:20978042-20978061 Msa0981430:intron 35.0%
GTTACAACTATAGGAGTTAG+TGG + chr6_4:20978313-20978332 None:intergenic 35.0%
TAAGGGGATAATTAACTGAC+AGG + chr6_4:20978350-20978369 None:intergenic 35.0%
!! TTGTTCTAGAGAGTTCTAAG+GGG + chr6_4:20978366-20978385 None:intergenic 35.0%
TGCTTAATATATGAAGTGGG+AGG - chr6_4:20978433-20978452 Msa0981430:intron 35.0%
GCTTAATATATGAAGTGGGA+GGG - chr6_4:20978434-20978453 Msa0981430:intron 35.0%
CAGAGAGTAGAAGTTGTTAA+AGG + chr6_4:20978496-20978515 None:intergenic 35.0%
TCAGTATATACTGCTGATAG+TGG - chr6_4:20978896-20978915 Msa0981430:intron 35.0%
AGAACGTGTGAAATTCTTAG+AGG - chr6_4:20979070-20979089 Msa0981430:intron 35.0%
!!! ATGGTATTGTTTTTATGCCC+TGG - chr6_4:20979120-20979139 Msa0981430:CDS 35.0%
!!! TGGTATTGTTTTTATGCCCT+GGG - chr6_4:20979121-20979140 Msa0981430:CDS 35.0%
! GAAGACACATGTTTTGTAAC+TGG - chr6_4:20979143-20979162 Msa0981430:CDS 35.0%
! ATAAACAAGTTGAAGTCGAC+CGG + chr6_4:20979407-20979426 None:intergenic 35.0%
ACAGGTGTGAGATAATAGAA+TGG + chr6_4:20979797-20979816 None:intergenic 35.0%
! TCACACCTGTGTCTTTTAAT+TGG - chr6_4:20979807-20979826 Msa0981430:intron 35.0%
TGGAATGTGCTTGAAATAGT+AGG - chr6_4:20979941-20979960 Msa0981430:intron 35.0%
ACTCTCGTCCTTATATTGAA+GGG + chr6_4:20980082-20980101 None:intergenic 35.0%
TACTCTCGTCCTTATATTGA+AGG + chr6_4:20980083-20980102 None:intergenic 35.0%
! GAGAGTATGTTCAATTGTTG+TGG - chr6_4:20980096-20980115 Msa0981430:intron 35.0%
!! ACATAGTGTGCCTTTAAGAT+AGG - chr6_4:20980236-20980255 Msa0981430:intron 35.0%
AAGTGGAAATAGGATCAACA+TGG + chr6_4:20980305-20980324 None:intergenic 35.0%
!! AGAAAAATCTTGGTGTCAAG+TGG + chr6_4:20980322-20980341 None:intergenic 35.0%
! TCAATCAGCTCTGATTAATC+AGG - chr6_4:20980486-20980505 Msa0981430:CDS 35.0%
CAGAACACTTTACTTCATCA+GGG + chr6_4:20980707-20980726 None:intergenic 35.0%
ACAGAACACTTTACTTCATC+AGG + chr6_4:20980708-20980727 None:intergenic 35.0%
!! ACAAGAAAGCGAGGTTTTAG+AGG - chr6_4:20975351-20975370 Msa0981430:three_prime_UTR 40.0%
TCAGAAACAAGGGTTAGGAT+TGG + chr6_4:20975568-20975587 None:intergenic 40.0%
CTGTTACACCGAAGATTTCA+CGG - chr6_4:20975855-20975874 Msa0981430:CDS 40.0%
AACTGACGAAACAGCTACTT+CGG + chr6_4:20975903-20975922 None:intergenic 40.0%
GTTCATACTTCTTCGGTTAG+TGG - chr6_4:20975920-20975939 Msa0981430:intron 40.0%
ATACTTCTTCGGTTAGTGGA+GGG - chr6_4:20975924-20975943 Msa0981430:intron 40.0%
TCAGCAAAATGTTGAAGGGA+AGG - chr6_4:20975970-20975989 Msa0981430:intron 40.0%
CTTATCTCACAGAGTAGAGT+CGG + chr6_4:20976247-20976266 None:intergenic 40.0%
CTACTCTGTGAGATAAGACT+TGG - chr6_4:20976250-20976269 Msa0981430:intron 40.0%
TGTCGAACACTGATACATGT+CGG - chr6_4:20976688-20976707 Msa0981430:intron 40.0%
TCCAGAACAAAAAGAACACC+AGG - chr6_4:20977062-20977081 Msa0981430:CDS 40.0%
! TCCTGGTGTTCTTTTTGTTC+TGG + chr6_4:20977066-20977085 None:intergenic 40.0%
TTGAGATGTGGTTGCTTGAT+TGG + chr6_4:20977137-20977156 None:intergenic 40.0%
GCAAAAAGCTGATCATTAGC+GGG + chr6_4:20977198-20977217 None:intergenic 40.0%
CGCAAAAAGCTGATCATTAG+CGG + chr6_4:20977199-20977218 None:intergenic 40.0%
! TCTTTTCATCTCCCAGCTTT+TGG - chr6_4:20977340-20977359 Msa0981430:intron 40.0%
ATTTCATAAACGCTGGCGAT+TGG - chr6_4:20977809-20977828 Msa0981430:intron 40.0%
ATAAATCAGGGCATACCCTT+TGG + chr6_4:20978026-20978045 None:intergenic 40.0%
!! AGAATAGAAGCACTCCAAAG+TGG + chr6_4:20978059-20978078 None:intergenic 40.0%
! GCACAAGCATAATTTGTCTG+TGG - chr6_4:20978164-20978183 Msa0981430:intron 40.0%
CTTCTTTCCTCTATCACTGA+TGG - chr6_4:20978647-20978666 Msa0981430:intron 40.0%
GAAGAAACCATCAGTGATAG+AGG + chr6_4:20978657-20978676 None:intergenic 40.0%
CCTAAACATCATGTCTACTG+AGG + chr6_4:20978679-20978698 None:intergenic 40.0%
CCTCAGTAGACATGATGTTT+AGG - chr6_4:20978676-20978695 Msa0981430:intron 40.0%
ATCAGTAGAGTTAAGCAGAG+AGG + chr6_4:20978807-20978826 None:intergenic 40.0%
ACAAAACATGTGTCTTCCCA+GGG + chr6_4:20979140-20979159 None:intergenic 40.0%
TACAAAACATGTGTCTTCCC+AGG + chr6_4:20979141-20979160 None:intergenic 40.0%
! GACACATGTTTTGTAACTGG+TGG - chr6_4:20979146-20979165 Msa0981430:CDS 40.0%
GTGATCATGCTGTTGTACTT+TGG - chr6_4:20979171-20979190 Msa0981430:CDS 40.0%
GAATGAAGATTCCTGTGCAA+TGG + chr6_4:20979233-20979252 None:intergenic 40.0%
TCTTCATTCTTCTGCTGTCA+TGG - chr6_4:20979244-20979263 Msa0981430:intron 40.0%
CTTCATTCTTCTGCTGTCAT+GGG - chr6_4:20979245-20979264 Msa0981430:intron 40.0%
AAGCAGATTGTGTTATCTGC+AGG - chr6_4:20979287-20979306 Msa0981430:intron 40.0%
! GGTCGACTTCAACTTGTTTA+TGG - chr6_4:20979406-20979425 Msa0981430:intron 40.0%
! ATTTTCTACAGGCTTTGCCA+TGG - chr6_4:20979488-20979507 Msa0981430:intron 40.0%
TAGTGCAAGAAACTTCAGGT+GGG + chr6_4:20979637-20979656 None:intergenic 40.0%
ATAGTGCAAGAAACTTCAGG+TGG + chr6_4:20979638-20979657 None:intergenic 40.0%
ACCTGTGAACTTCAGTGAAT+TGG - chr6_4:20979710-20979729 Msa0981430:intron 40.0%
TCCAATTCACTGAAGTTCAC+AGG + chr6_4:20979714-20979733 None:intergenic 40.0%
GTGAGATAATAGAATGGTGG+CGG + chr6_4:20979791-20979810 None:intergenic 40.0%
GGTGTGAGATAATAGAATGG+TGG + chr6_4:20979794-20979813 None:intergenic 40.0%
CATGGGCAAAACAAATGAGA+TGG - chr6_4:20980019-20980038 Msa0981430:intron 40.0%
GGCAAAACAAATGAGATGGT+TGG - chr6_4:20980023-20980042 Msa0981430:intron 40.0%
TCTCGTCCTTATATTGAAGG+GGG + chr6_4:20980080-20980099 None:intergenic 40.0%
CTCTCGTCCTTATATTGAAG+GGG + chr6_4:20980081-20980100 None:intergenic 40.0%
!! TCTTGGTGTCAAGTGGAAAT+AGG + chr6_4:20980315-20980334 None:intergenic 40.0%
! GGACAGAACTTCATGCTTTT+GGG - chr6_4:20980440-20980459 Msa0981430:CDS 40.0%
! TTCTGTCTCCATCCTTTTGT+TGG - chr6_4:20980722-20980741 Msa0981430:intron 40.0%
ATTCAGCACCAACAAAAGGA+TGG + chr6_4:20980733-20980752 None:intergenic 40.0%
GGCTACAACGACAAATTAGA+TGG + chr6_4:20980949-20980968 None:intergenic 40.0%
! TAATTTGTCGTTGTAGCCTG+AGG - chr6_4:20980951-20980970 Msa0981430:five_prime_UTR 40.0%
AAAACGTGATGTATCACCTC+AGG + chr6_4:20980970-20980989 None:intergenic 40.0%
! TCTGAAGAGCACGTTGTAAC+GGG + chr6_4:20975332-20975351 None:intergenic 45.0%
! GTCTGAAGAGCACGTTGTAA+CGG + chr6_4:20975333-20975352 None:intergenic 45.0%
ACGGAGATTGTTAACTTCGC+GGG + chr6_4:20975501-20975520 None:intergenic 45.0%
GACGGAGATTGTTAACTTCG+CGG + chr6_4:20975502-20975521 None:intergenic 45.0%
! GAAATCTTCGGTGTAACAGC+AGG + chr6_4:20975854-20975873 None:intergenic 45.0%
ACCGAAGATTTCACGGTCAT+CGG - chr6_4:20975862-20975881 Msa0981430:CDS 45.0%
ATTTCACGGTCATCGGGAAA+AGG - chr6_4:20975869-20975888 Msa0981430:CDS 45.0%
CATACTTCTTCGGTTAGTGG+AGG - chr6_4:20975923-20975942 Msa0981430:intron 45.0%
CACTGACATCAGACACACAT+TGG - chr6_4:20976180-20976199 Msa0981430:intron 45.0%
TCAGACGTCATACACAACAC+TGG - chr6_4:20976537-20976556 Msa0981430:intron 45.0%
GTCGAACACTGATACATGTC+GGG - chr6_4:20976689-20976708 Msa0981430:intron 45.0%
AGCTTTCCAAGCAGCTCTTA+CGG + chr6_4:20976867-20976886 None:intergenic 45.0%
TGGCTGTAGCCTGTATCTTA+AGG - chr6_4:20976929-20976948 Msa0981430:CDS 45.0%
!! TCTTGTGCTGACTTGAGATG+TGG + chr6_4:20977149-20977168 None:intergenic 45.0%
ACATCTCAAGTCAGCACAAG+AGG - chr6_4:20977148-20977167 Msa0981430:CDS 45.0%
GTCAGCACAAGAGGAAATTG+CGG - chr6_4:20977157-20977176 Msa0981430:CDS 45.0%
! ATGATCAGCTTTTTGCGACC+AGG - chr6_4:20977202-20977221 Msa0981430:CDS 45.0%
! GCTTTTTGCGACCAGGTAAT+TGG - chr6_4:20977209-20977228 Msa0981430:CDS 45.0%
! GATAGAGAAGCATACTCACG+AGG + chr6_4:20977739-20977758 None:intergenic 45.0%
! TTGCAGTGCTTTGGATGGAT+TGG - chr6_4:20977979-20977998 Msa0981430:intron 45.0%
!! TGGATGGATTGGTCAACTTC+TGG - chr6_4:20977990-20978009 Msa0981430:intron 45.0%
! TTCTGGAAAGTCCAAGCCAA+AGG - chr6_4:20978007-20978026 Msa0981430:intron 45.0%
TCTGGAAAGTCCAAGCCAAA+GGG - chr6_4:20978008-20978027 Msa0981430:intron 45.0%
GAGAATAGACTGTCAGCAGA+AGG + chr6_4:20978209-20978228 None:intergenic 45.0%
ACTTCTACTCTCTGAATGCG+AGG - chr6_4:20978502-20978521 Msa0981430:intron 45.0%
! ACTCTCTGAATGCGAGGTTT+TGG - chr6_4:20978508-20978527 Msa0981430:intron 45.0%
ATTGTGCGTCCCAAAAACAG+AGG - chr6_4:20978825-20978844 Msa0981430:intron 45.0%
!! TGGCCATCTCCTCTGTTTTT+GGG + chr6_4:20978837-20978856 None:intergenic 45.0%
GATGGCCAGAAGATATAGCT+TGG - chr6_4:20978849-20978868 Msa0981430:intron 45.0%
AGAAGATATAGCTTGGCACC+CGG - chr6_4:20978856-20978875 Msa0981430:intron 45.0%
AAAAGAGCCTGTTTCCTTCC+GGG + chr6_4:20978877-20978896 None:intergenic 45.0%
GAAAAGAGCCTGTTTCCTTC+CGG + chr6_4:20978878-20978897 None:intergenic 45.0%
AGCAGGATGATGAGGACAAA+TGG - chr6_4:20979198-20979217 Msa0981430:CDS 45.0%
AGATTCCTGTGCAATGGTCT+TGG + chr6_4:20979227-20979246 None:intergenic 45.0%
GATTGTGTTATCTGCAGGTG+CGG - chr6_4:20979292-20979311 Msa0981430:intron 45.0%
GTGCGGACAGGAGAATATTT+GGG - chr6_4:20979309-20979328 Msa0981430:intron 45.0%
! TTTGGGTTTGATGTTGGTGC+AGG - chr6_4:20979326-20979345 Msa0981430:intron 45.0%
AAGTTGAAGTCGACCGGATT+GGG + chr6_4:20979401-20979420 None:intergenic 45.0%
TCACAGGTAACTTGAGCAAC+TGG + chr6_4:20979698-20979717 None:intergenic 45.0%
CCACGCAACTACTGAATCAT+GGG + chr6_4:20980049-20980068 None:intergenic 45.0%
CATCCACCCCCTTCAATATA+AGG - chr6_4:20980071-20980090 Msa0981430:intron 45.0%
! CGGACAGAACTTCATGCTTT+TGG - chr6_4:20980439-20980458 Msa0981430:CDS 45.0%
! CAGAACTTCATGCTTTTGGG+TGG - chr6_4:20980443-20980462 Msa0981430:CDS 45.0%
! CAGCTCTGATTAATCAGGCT+TGG - chr6_4:20980491-20980510 Msa0981430:CDS 45.0%
GCTCACCAGAAAAGAGTCTT+TGG - chr6_4:20980613-20980632 Msa0981430:CDS 45.0%
! AGGCTCCAAAGACTCTTTTC+TGG + chr6_4:20980621-20980640 None:intergenic 45.0%
!! AAAGAGTCTTTGGAGCCTTG+TGG - chr6_4:20980623-20980642 Msa0981430:CDS 45.0%
AGGAATAGACTGAAGCCACA+AGG + chr6_4:20980641-20980660 None:intergenic 45.0%
! GGAAAGGCATGCTTAGATGT+TGG - chr6_4:20980896-20980915 Msa0981430:exon 45.0%
!!! AAATATATATTTTTAGAAAA+TGG + chr6_4:20977662-20977681 None:intergenic 5.0%
GCTCTTCAGACAAGAAAGCG+AGG - chr6_4:20975342-20975361 Msa0981430:three_prime_UTR 50.0%
TGGTATAGGCAAGACGGTGA+CGG + chr6_4:20975520-20975539 None:intergenic 50.0%
CCCGATGACCGTGAAATCTT+CGG + chr6_4:20975866-20975885 None:intergenic 50.0%
CCGAAGATTTCACGGTCATC+GGG - chr6_4:20975863-20975882 Msa0981430:CDS 50.0%
GTTCTTCCGTAAGAGCTGCT+TGG - chr6_4:20976858-20976877 Msa0981430:intron 50.0%
GCTGGGAGATGAAAAGAGAC+AGG + chr6_4:20977337-20977356 None:intergenic 50.0%
ATACAACAGAGGCCTCGCAT+AGG + chr6_4:20977595-20977614 None:intergenic 50.0%
!! TTGGGAGTGTTGCAGTGCTT+TGG - chr6_4:20977970-20977989 Msa0981430:intron 50.0%
! GAGTGTTGCAGTGCTTTGGA+TGG - chr6_4:20977974-20977993 Msa0981430:intron 50.0%
TGTCTGTGGTGTACTCCCTA+TGG - chr6_4:20978178-20978197 Msa0981430:intron 50.0%
CAGCAGAAGGAGCAACCATA+GGG + chr6_4:20978196-20978215 None:intergenic 50.0%
TCAGCAGAAGGAGCAACCAT+AGG + chr6_4:20978197-20978216 None:intergenic 50.0%
AGCTCACATAAGCTCGACCT+AGG + chr6_4:20978256-20978275 None:intergenic 50.0%
AGCTCTTGTGAGCTTGAGCT+AGG - chr6_4:20978465-20978484 Msa0981430:intron 50.0%
!! CTGAATGCGAGGTTTTGGTG+TGG - chr6_4:20978513-20978532 Msa0981430:intron 50.0%
CGTCCCAAAAACAGAGGAGA+TGG - chr6_4:20978831-20978850 Msa0981430:intron 50.0%
! CTGGCCATCTCCTCTGTTTT+TGG + chr6_4:20978838-20978857 None:intergenic 50.0%
GGGTGCCAAGCTATATCTTC+TGG + chr6_4:20978857-20978876 None:intergenic 50.0%
AGAGGACAAGCCCCATGTTA+AGG - chr6_4:20979088-20979107 Msa0981430:intron 50.0%
GAGGACAAGCCCCATGTTAA+GGG - chr6_4:20979089-20979108 Msa0981430:intron 50.0%
GGTGCGGACAGGAGAATATT+TGG - chr6_4:20979308-20979327 Msa0981430:intron 50.0%
! CATGAGTGTCGTTCCCAATC+CGG - chr6_4:20979385-20979404 Msa0981430:intron 50.0%
! CAAGTTGAAGTCGACCGGAT+TGG + chr6_4:20979402-20979421 None:intergenic 50.0%
CCCATGATTCAGTAGTTGCG+TGG - chr6_4:20980046-20980065 Msa0981430:intron 50.0%
GCCACGCAACTACTGAATCA+TGG + chr6_4:20980050-20980069 None:intergenic 50.0%
CGTCCTTATATTGAAGGGGG+TGG + chr6_4:20980077-20980096 None:intergenic 50.0%
! AATCAGGCTTGGTCTCCTGA+TGG - chr6_4:20980502-20980521 Msa0981430:CDS 50.0%
!! TCCAAACTGGCTCGTCTTCG+AGG - chr6_4:20975683-20975702 Msa0981430:CDS 55.0%
ACCTCGAAGACGAGCCAGTT+TGG + chr6_4:20975687-20975706 None:intergenic 55.0%
!! TCCCAGCTTTTGGCTGCAGA+AGG - chr6_4:20977350-20977369 Msa0981430:intron 55.0%
GCCTTCTGCAGCCAAAAGCT+GGG + chr6_4:20977354-20977373 None:intergenic 55.0%
TGCCTTCTGCAGCCAAAAGC+TGG + chr6_4:20977355-20977374 None:intergenic 55.0%
!! TTTTGGCTGCAGAAGGCACG+AGG - chr6_4:20977357-20977376 Msa0981430:intron 55.0%
TCAGGGCATACCCTTTGGCT+TGG + chr6_4:20978021-20978040 None:intergenic 55.0%
GATATAGCTTGGCACCCGGA+AGG - chr6_4:20978860-20978879 Msa0981430:intron 55.0%
TGTTGTACTTTGGCGCGAGC+AGG - chr6_4:20979181-20979200 Msa0981430:CDS 55.0%
GGAAGCCAAGACCATTGCAC+AGG - chr6_4:20979219-20979238 Msa0981430:CDS 55.0%
! TCTGCTGTCATGGGTGTTGC+TGG - chr6_4:20979254-20979273 Msa0981430:intron 55.0%
TGTTATCTGCAGGTGCGGAC+AGG - chr6_4:20979297-20979316 Msa0981430:intron 55.0%
! AGGCTATGACGCACTGACGC+AGG - chr6_4:20976513-20976532 Msa0981430:intron 60.0%
CTTGGCACCCGGAAGGAAAC+AGG - chr6_4:20978867-20978886 Msa0981430:intron 60.0%
TTGGCGCGAGCAGGATGATG+AGG - chr6_4:20979190-20979209 Msa0981430:CDS 60.0%
!! TGGTGGCGGTCAAGTAGCGT+GGG + chr6_4:20979777-20979796 None:intergenic 60.0%
!! ATGGTGGCGGTCAAGTAGCG+TGG + chr6_4:20979778-20979797 None:intergenic 60.0%
TCCGCACGACTGCCTATGCG+AGG - chr6_4:20977580-20977599 Msa0981430:intron 65.0%
GCCTCGCATAGGCAGTCGTG+CGG + chr6_4:20977584-20977603 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 20975296 20981024 20975296 ID=Msa0981430;Name=Msa0981430
chr6_4 mRNA 20975296 20981024 20975296 ID=Msa0981430-mRNA-1;Parent=Msa0981430;Name=Msa0981430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=126|1|1|1|1|1|7|307|518
chr6_4 exon 20975296 20975924 20975296 ID=Msa0981430-mRNA-1:exon:6409;Parent=Msa0981430-mRNA-1
chr6_4 exon 20976882 20977252 20976882 ID=Msa0981430-mRNA-1:exon:6408;Parent=Msa0981430-mRNA-1
chr6_4 exon 20977359 20977524 20977359 ID=Msa0981430-mRNA-1:exon:6407;Parent=Msa0981430-mRNA-1
chr6_4 exon 20978291 20978335 20978291 ID=Msa0981430-mRNA-1:exon:6406;Parent=Msa0981430-mRNA-1
chr6_4 exon 20979097 20979253 20979097 ID=Msa0981430-mRNA-1:exon:6405;Parent=Msa0981430-mRNA-1
chr6_4 exon 20980304 20980673 20980304 ID=Msa0981430-mRNA-1:exon:6404;Parent=Msa0981430-mRNA-1
chr6_4 exon 20980773 20981024 20980773 ID=Msa0981430-mRNA-1:exon:6403;Parent=Msa0981430-mRNA-1
chr6_4 five_prime_UTR 20980899 20981024 20980899 ID=Msa0981430-mRNA-1:five_prime_utr;Parent=Msa0981430-mRNA-1
chr6_4 CDS 20980773 20980898 20980773 ID=Msa0981430-mRNA-1:cds;Parent=Msa0981430-mRNA-1
chr6_4 CDS 20980304 20980673 20980304 ID=Msa0981430-mRNA-1:cds;Parent=Msa0981430-mRNA-1
chr6_4 CDS 20979097 20979253 20979097 ID=Msa0981430-mRNA-1:cds;Parent=Msa0981430-mRNA-1
chr6_4 CDS 20978291 20978335 20978291 ID=Msa0981430-mRNA-1:cds;Parent=Msa0981430-mRNA-1
chr6_4 CDS 20977359 20977524 20977359 ID=Msa0981430-mRNA-1:cds;Parent=Msa0981430-mRNA-1
chr6_4 CDS 20976882 20977252 20976882 ID=Msa0981430-mRNA-1:cds;Parent=Msa0981430-mRNA-1
chr6_4 CDS 20975603 20975924 20975603 ID=Msa0981430-mRNA-1:cds;Parent=Msa0981430-mRNA-1
chr6_4 three_prime_UTR 20975296 20975602 20975296 ID=Msa0981430-mRNA-1:three_prime_utr;Parent=Msa0981430-mRNA-1
Gene Sequence

>Msa0981430

ATGGAAGAAGAAGATAACGAAATCACGAGCAGAGAAGAACAAGAAGAAGCATTAGTCGCTTTAATCGAACATCGAACCCGCGAAGTTAACAATCTCCGTCACCGTCTTGCCTATACCAAAAATCAGCTTGATGATGCGGAAAAGAGATTAAAAAATTCAGAATCCAAACTGGCTCGTCTTCGAGGTCAAACAACTAAAAAAATAACTAACTCAGATGATGATGATAATGGAATTGTAGCTGTCAAGAAAGAGCGTAGATCGAATAGTCCAATTGATAGGAATGAACGTTCTTATAAAAGTAATAAGCAATCTAAAACTGAACTTGTTATTCCTGCTGTTACACCGAAGATTTCACGGTCATCGGGAAAAGGTTCTGTTTCCGAAGTAGCTGTTTCGTCAGTTCATACTTCTTCGGTTAGTGGAGGGAAATCAGATAAGTCGAAAATAGATCAGCAAAATGTTGAAGGGAAGGATAAAGGGACAAAAAGAAAATTTGAACAAAAAGAACACCAGGAATTGATTCCTTTAATACGCAAGAGTTCATCAAAGAAATTAGTACACTGCCAATCAAGCAACCACATCTCAAGTCAGCACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCCGCTAATGATCAGCTTTTTGCGACCAGTGCTTTGGATGGATTGGTCAACTTCTGGAAAGTCCAAGCCAAAGGATCATCAGCCTCTCTGCTTAACTCTACTGATTGTGCGTCCCAAAAACAGAGGAGATGGCCAGAAGATATAGCTTGGCACCCGGAAGGAAACAGGCTCTTTTCAGTATATACTGCTGATAGTGGAGACTCACAAATATCAGTTACAAATTGGAATAAAATTAAAGGGGTAGAACGTGTGAAATTCTTAGAGGACAAGCCCCATGTTAAGGGAATTATCAATGGTATTGTTTTTATGCCCTGGGAAGACACATGTTTTGTAACTGGTGGAAGTGATCATGCTGTTGTACTTTGGCGCGAGCAGGATGATGAGGACAAATGGAAGCCAAGACCATTGCACAGGAATCTTCATTCTTCTGCTGTCATGGGTGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTATCTGCAGGTGCGGACAGGAGAATATTTGGGTTTGATGTTGGTGCAGGAAGAGCAGAGTTCACTCATCAGATTGATAGTAAATGCATGAGTGTCGTTCCCAATCCGGTCGACTTCAACTTGTTTATGGTTCAAACAGGGACTCATGAGAAGCAGCTTCGATTATTTGATATTAGATTGAGGCGGACAGAACTTCATGCTTTTGGGTGGAAACAAGAAAGCAGTGAATCTCAATCAGCTCTGATTAATCAGGCTTGGTCTCCTGATGGTCTTTATATAACATCTGGTTCAGCGGATCCTGTGATTCACATATTTGATATAAGATATAATCTTAACAGGCCGTCACAATCTATAAAAGCTCACCAGAAAAGAGTCTTTGGAGCCTTGTGGCTTCAGTCTATTCCTCTTCTCATATCTATATCATCTGATCTCAACATTGGGTTGCACACCCTGATGAAGTAA

Protein sequence

>Msa0981430

MEEEDNEITSREEQEEALVALIEHRTREVNNLRHRLAYTKNQLDDAEKRLKNSESKLARLRGQTTKKITNSDDDDNGIVAVKKERRSNSPIDRNERSYKSNKQSKTELVIPAVTPKISRSSGKGSVSEVAVSSVHTSSVSGGKSDKSKIDQQNVEGKDKGTKRKFEQKEHQELIPLIRKSSSKKLVHCQSSNHISSQHKRKLRSIALCPANDQLFATSALDGLVNFWKVQAKGSSASLLNSTDCASQKQRRWPEDIAWHPEGNRLFSVYTADSGDSQISVTNWNKIKGVERVKFLEDKPHVKGIINGIVFMPWEDTCFVTGGSDHAVVLWREQDDEDKWKPRPLHRNLHSSAVMGVAGMQQKQIVLSAGADRRIFGFDVGAGRAEFTHQIDSKCMSVVPNPVDFNLFMVQTGTHEKQLRLFDIRLRRTELHAFGWKQESSESQSALINQAWSPDGLYITSGSADPVIHIFDIRYNLNRPSQSIKAHQKRVFGALWLQSIPLLISISSDLNIGLHTLMK*