AlfalfaGEDB | Msa0881580

M. sativa cultivar zhongmu-4 / Msa0881580

KEGG: K09528
GO: GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881580	XP_003596904.1	80.000	250	2	1	1	202	1	250	3.14e-128	371

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881580	G7IRF3	80.000	250	2	1	1	202	1	250	1.50e-128	371

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005270	Msa0881580	0.802912	4.478384e-49	-8.615850e-47
Msa0006880	Msa0881580	0.810724	9.998117e-51	-8.615850e-47
Msa0008220	Msa0881580	0.800097	1.690944e-48	-8.615850e-47
Msa0010770	Msa0881580	0.813216	2.863557e-51	-8.615850e-47
Msa0015140	Msa0881580	0.827911	1.204030e-54	-8.615850e-47
Msa0015680	Msa0881580	0.836187	1.083659e-56	-8.615850e-47
Msa0027390	Msa0881580	0.840951	6.379861e-58	-8.615850e-47
Msa0038000	Msa0881580	0.816068	6.689848e-52	-8.615850e-47
Msa0038440	Msa0881580	0.813287	2.763250e-51	-8.615850e-47
Msa0043500	Msa0881580	0.804195	2.427615e-49	-8.615850e-47

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881580	MtrunA17_Chr2g0322111	80.000	250	2	1	1	202	1	250	2.89e-132	371

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881580	AT5G22080.1	64.000	250	38	2	1	202	1	246	2.87e-88	260
Msa0881580	AT5G22080.2	58.400	250	34	3	1	202	1	228	1.77e-72	219

Showing 1 to 2 of 2 entries

Previous1Next

Find 57 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGACACAAAGGGCGCA+TGG	0.611823	6_1:-28863641	None:intergenic
AAAGAGACAATGAAGTCCTC+AGG	0.532848	6_1:+28858377	Msa0881580:CDS
AAATATTATGTAGATATCCG+AGG	0.665580	6_1:+28861672	Msa0881580:intron
AAGAAAGCGTGAACATGAAG+AGG	0.566688	6_1:+28861744	Msa0881580:CDS
AAGTAAATCATCTTCGATGA+TGG	0.548035	6_1:-28858320	None:intergenic
AAGTTGTATTGCCTTTACAA+TGG	0.532894	6_1:+28863785	Msa0881580:three_prime_UTR
AATATCAATCAGTATTCATT+TGG	0.350105	6_1:-28863724	None:intergenic
AATCATGCATATAGGTTACC+TGG	0.444107	6_1:-28863937	None:intergenic
AATGAAGTCCTTAGTTGATG+AGG	0.574884	6_1:+28860883	Msa0881580:CDS
ACAATATCAAACTGACACAA+AGG	0.582509	6_1:-28863649	None:intergenic

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAAATCATCTTCGATGA+TGG	-	chr6_1:28858323-28858342	None:intergenic	30.0%
GATAGGTTTAAATGCTCAAA+CGG	-	chr6_1:28858615-28858634	None:intergenic	30.0%
CAATAGATGAATCAAACGAT+AGG	-	chr6_1:28858632-28858651	None:intergenic	30.0%
TAAACTTTACAACTAAAGCG+AGG	+	chr6_1:28859595-28859614	Msa0881580:intron	30.0%
TAGTGGAAGATAACTTCAAA+AGG	+	chr6_1:28859710-28859729	Msa0881580:intron	30.0%
TAACCAACATATCAGTGTAT+TGG	-	chr6_1:28859862-28859881	None:intergenic	30.0%
TACATATATGATGCCTAAGA+AGG	+	chr6_1:28859880-28859899	Msa0881580:intron	30.0%
CAACCAAAATAACACTTGAA+TGG	-	chr6_1:28859940-28859959	None:intergenic	30.0%
TGATAATTTCTGCAACATGA+TGG	+	chr6_1:28860149-28860168	Msa0881580:intron	30.0%
AGTGCAAATTACTTCTACTA+AGG	+	chr6_1:28860358-28860377	Msa0881580:intron	30.0%

Showing 1 to 10 of 361 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	28858168	28863991	28858168	ID=Msa0881580;Name=Msa0881580
chr6_1	mRNA	28858168	28863991	28858168	ID=Msa0881580-mRNA-1;Parent=Msa0881580;Name=Msa0881580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130\|0.85\|0.87\|1\|0.71\|0.87\|8\|400\|202
chr6_1	exon	28858168	28858398	28858168	ID=Msa0881580-mRNA-1:exon:7349;Parent=Msa0881580-mRNA-1
chr6_1	exon	28858587	28858594	28858587	ID=Msa0881580-mRNA-1:exon:7350;Parent=Msa0881580-mRNA-1
chr6_1	exon	28860230	28860307	28860230	ID=Msa0881580-mRNA-1:exon:7351;Parent=Msa0881580-mRNA-1
chr6_1	exon	28860831	28860904	28860831	ID=Msa0881580-mRNA-1:exon:7352;Parent=Msa0881580-mRNA-1
chr6_1	exon	28861145	28861258	28861145	ID=Msa0881580-mRNA-1:exon:7353;Parent=Msa0881580-mRNA-1
chr6_1	exon	28861685	28861792	28861685	ID=Msa0881580-mRNA-1:exon:7354;Parent=Msa0881580-mRNA-1
chr6_1	exon	28863351	28863389	28863351	ID=Msa0881580-mRNA-1:exon:7355;Parent=Msa0881580-mRNA-1
chr6_1	exon	28863505	28863991	28863505	ID=Msa0881580-mRNA-1:exon:7356;Parent=Msa0881580-mRNA-1
chr6_1	five_prime_UTR	28858168	28858297	28858168	ID=Msa0881580-mRNA-1:five_prime_utr;Parent=Msa0881580-mRNA-1
chr6_1	CDS	28858298	28858398	28858298	ID=Msa0881580-mRNA-1:cds;Parent=Msa0881580-mRNA-1
chr6_1	CDS	28858587	28858594	28858587	ID=Msa0881580-mRNA-1:cds;Parent=Msa0881580-mRNA-1
chr6_1	CDS	28860230	28860307	28860230	ID=Msa0881580-mRNA-1:cds;Parent=Msa0881580-mRNA-1
chr6_1	CDS	28860831	28860904	28860831	ID=Msa0881580-mRNA-1:cds;Parent=Msa0881580-mRNA-1
chr6_1	CDS	28861145	28861258	28861145	ID=Msa0881580-mRNA-1:cds;Parent=Msa0881580-mRNA-1
chr6_1	CDS	28861685	28861792	28861685	ID=Msa0881580-mRNA-1:cds;Parent=Msa0881580-mRNA-1
chr6_1	CDS	28863351	28863389	28863351	ID=Msa0881580-mRNA-1:cds;Parent=Msa0881580-mRNA-1
chr6_1	CDS	28863505	28863591	28863505	ID=Msa0881580-mRNA-1:cds;Parent=Msa0881580-mRNA-1
chr6_1	three_prime_UTR	28863592	28863991	28863592	ID=Msa0881580-mRNA-1:three_prime_utr;Parent=Msa0881580-mRNA-1

Gene Sequence

>Msa0881580

ATGGGAGAATCAAACCCATCCACCATCATCGAAGATGATTTACTTCTCAAAAATTTCTTCGCTGAAGTCAGCGAAGTTGAAAGAGACAATGAAGTCCTCAGGATTCTGGCACTAGCAAAAGCACAACAATTATTACTCGATCCAAATGAAAGAGATTATCTTCTTAGCCAAGTTAATTCAGCAAAAGAAGAACTTAGAGTAAAGAGAAAGAAACATCTGAAGAAGGATACAGCCTCAAAAATGAAGTCCTTAGTTGATGAGGGAAAATATGATAAGCAATATGAACAGTCGGAAGAATTCAAGCAGGAGCTCAAACTTAAAGTTCGTGAACTATTAACAGAAAAAGAATGGAGGAGAAGAAAAATGCAAATGAGGATATCCGAGGAGGAAGGCAGATTAAAAAAGGATGAGGAGGAACAGAAAGAAATATGGAAAAGAAAGCGTGAACATGAAGAGGAATGGGAAGGAACAAGAGAAAAGAGGGTATCCAGCTGGAGAGATTTTATGAAGGGTGGAAAGAAGAACAAAAAGGGAGAAATTCGTCCCCCTAAGCTCAAGACAGAAGATCCTAACAAATCCTACGTTCAGAGGCCTGTAAAAAAAGGCTAG

Protein sequence

>Msa0881580

MGESNPSTIIEDDLLLKNFFAEVSEVERDNEVLRILALAKAQQLLLDPNERDYLLSQVNSAKEELRVKRKKHLKKDTASKMKSLVDEGKYDKQYEQSEEFKQELKLKVRELLTEKEWRRRKMQMRISEEEGRLKKDEEEQKEIWKRKREHEEEWEGTREKRVSSWRDFMKGGKKNKKGEIRPPKLKTEDPNKSYVQRPVKKG*