Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162430 | XP_013467789.1 | 93.750 | 704 | 41 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162430 | sp|F4K1B1|RPAP2_ARATH | 41.261 | 761 | 364 | 14 | 20 | 723 | 1 | 735 | 1.58e-171 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162430 | A0A072VJQ7 | 93.750 | 704 | 41 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002560 | Msa0162430 | 0.816997 | 4.143370e-52 | -8.615850e-47 |
| Msa0005620 | Msa0162430 | 0.809158 | 2.172436e-50 | -8.615850e-47 |
| Msa0010770 | Msa0162430 | 0.810865 | 9.320268e-51 | -8.615850e-47 |
| Msa0012710 | Msa0162430 | 0.824827 | 6.536714e-54 | -8.615850e-47 |
| Msa0023330 | Msa0162430 | 0.864057 | 1.598986e-64 | -8.615850e-47 |
| Msa0031180 | Msa0162430 | 0.853004 | 3.182507e-61 | -8.615850e-47 |
| Msa0037120 | Msa0162430 | 0.845184 | 4.758146e-59 | -8.615850e-47 |
| Msa0043500 | Msa0162430 | 0.846354 | 2.289865e-59 | -8.615850e-47 |
| Msa0043650 | Msa0162430 | 0.842875 | 1.979209e-58 | -8.615850e-47 |
| Msa0045340 | Msa0162430 | 0.833885 | 4.122891e-56 | -8.615850e-47 |
| Msa0051210 | Msa0162430 | 0.801166 | 1.023686e-48 | -8.615850e-47 |
| Msa0051450 | Msa0162430 | 0.808027 | 3.789293e-50 | -8.615850e-47 |
| Msa0053760 | Msa0162430 | 0.805813 | 1.113540e-49 | -8.615850e-47 |
| Msa0054820 | Msa0162430 | 0.856612 | 2.859761e-62 | -8.615850e-47 |
| Msa0056450 | Msa0162430 | 0.809122 | 2.211934e-50 | -8.615850e-47 |
| Msa0058600 | Msa0162430 | 0.801588 | 8.389881e-49 | -8.615850e-47 |
| Msa0058610 | Msa0162430 | 0.807839 | 4.154118e-50 | -8.615850e-47 |
| Msa0059890 | Msa0162430 | 0.805245 | 1.464861e-49 | -8.615850e-47 |
| Msa0064920 | Msa0162430 | 0.839102 | 1.936902e-57 | -8.615850e-47 |
| Msa0071090 | Msa0162430 | 0.981356 | 2.164961e-152 | -8.615850e-47 |
| Msa0078480 | Msa0162430 | 0.851999 | 6.155417e-61 | -8.615850e-47 |
| Msa0079130 | Msa0162430 | 0.804471 | 2.126656e-49 | -8.615850e-47 |
| Msa0084340 | Msa0162430 | 0.839711 | 1.345294e-57 | -8.615850e-47 |
| Msa0096580 | Msa0162430 | 0.801691 | 7.990478e-49 | -8.615850e-47 |
| Msa0099620 | Msa0162430 | 0.806056 | 9.899135e-50 | -8.615850e-47 |
| Msa0099650 | Msa0162430 | 0.825982 | 3.482503e-54 | -8.615850e-47 |
| Msa0100160 | Msa0162430 | 0.834014 | 3.829277e-56 | -8.615850e-47 |
| Msa0101830 | Msa0162430 | 0.802380 | 5.766944e-49 | -8.615850e-47 |
| Msa0115560 | Msa0162430 | 0.824735 | 6.870077e-54 | -8.615850e-47 |
| Msa0117520 | Msa0162430 | 0.802090 | 6.615643e-49 | -8.615850e-47 |
| Msa0119090 | Msa0162430 | 0.993180 | 5.530068e-198 | -8.615850e-47 |
| Msa0126190 | Msa0162430 | 0.829832 | 4.127594e-55 | -8.615850e-47 |
| Msa0126790 | Msa0162430 | 0.844882 | 5.742046e-59 | -8.615850e-47 |
| Msa0128180 | Msa0162430 | 0.800584 | 1.345846e-48 | -8.615850e-47 |
| Msa0131290 | Msa0162430 | 0.845856 | 3.127408e-59 | -8.615850e-47 |
| Msa0138020 | Msa0162430 | 0.818468 | 1.929517e-52 | -8.615850e-47 |
| Msa0138210 | Msa0162430 | 0.818336 | 2.067326e-52 | -8.615850e-47 |
| Msa0143850 | Msa0162430 | 0.834798 | 2.433020e-56 | -8.615850e-47 |
| Msa0152560 | Msa0162430 | 0.802574 | 5.259199e-49 | -8.615850e-47 |
| Msa0162430 | Msa0171120 | 0.809709 | 1.655102e-50 | -8.615850e-47 |
| Msa0162430 | Msa0171200 | 0.831993 | 1.217708e-55 | -8.615850e-47 |
| Msa0162430 | Msa0171870 | 0.835580 | 1.544455e-56 | -8.615850e-47 |
| Msa0162430 | Msa0174360 | 0.813843 | 2.084193e-51 | -8.615850e-47 |
| Msa0162430 | Msa0177170 | 0.832045 | 1.182454e-55 | -8.615850e-47 |
| Msa0162430 | Msa0178570 | 0.831821 | 1.343016e-55 | -8.615850e-47 |
| Msa0162430 | Msa0183420 | 0.809418 | 1.911228e-50 | -8.615850e-47 |
| Msa0162430 | Msa0202730 | 0.818928 | 1.517732e-52 | -8.615850e-47 |
| Msa0162430 | Msa0206330 | 0.823865 | 1.100355e-53 | -8.615850e-47 |
| Msa0162430 | Msa0218350 | 0.822779 | 1.973129e-53 | -8.615850e-47 |
| Msa0162430 | Msa0218370 | 0.803864 | 2.844685e-49 | -8.615850e-47 |
| Msa0162430 | Msa0223330 | 0.800672 | 1.291268e-48 | -8.615850e-47 |
| Msa0162430 | Msa0225220 | 0.813760 | 2.173949e-51 | -8.615850e-47 |
| Msa0162430 | Msa0227190 | 0.801117 | 1.047642e-48 | -8.615850e-47 |
| Msa0162430 | Msa0232020 | 0.810323 | 1.220285e-50 | -8.615850e-47 |
| Msa0162430 | Msa0233370 | 0.835347 | 1.768811e-56 | -8.615850e-47 |
| Msa0162430 | Msa0237200 | 0.831375 | 1.729836e-55 | -8.615850e-47 |
| Msa0162430 | Msa0237210 | 0.808821 | 2.565656e-50 | -8.615850e-47 |
| Msa0162430 | Msa0240300 | 0.803045 | 4.204404e-49 | -8.615850e-47 |
| Msa0162430 | Msa0241140 | 0.826379 | 2.802283e-54 | -8.615850e-47 |
| Msa0162430 | Msa0245860 | 0.823845 | 1.112388e-53 | -8.615850e-47 |
| Msa0162430 | Msa0249310 | 0.863018 | 3.358537e-64 | -8.615850e-47 |
| Msa0162430 | Msa0265150 | 0.811552 | 6.611187e-51 | -8.615850e-47 |
| Msa0162430 | Msa0271550 | 0.800698 | 1.275325e-48 | -8.615850e-47 |
| Msa0162430 | Msa0271790 | 0.814320 | 1.636387e-51 | -8.615850e-47 |
| Msa0162430 | Msa0274970 | 0.832298 | 1.023695e-55 | -8.615850e-47 |
| Msa0162430 | Msa0280110 | 0.829648 | 4.575708e-55 | -8.615850e-47 |
| Msa0162430 | Msa0280150 | 0.820641 | 6.161972e-53 | -8.615850e-47 |
| Msa0162430 | Msa0287790 | 0.863736 | 2.012567e-64 | -8.615850e-47 |
| Msa0162430 | Msa0307310 | 0.827703 | 1.351669e-54 | -8.615850e-47 |
| Msa0162430 | Msa0308440 | 0.882926 | 6.913221e-71 | -8.615850e-47 |
| Msa0162430 | Msa0308560 | 0.827592 | 1.437098e-54 | -8.615850e-47 |
| Msa0162430 | Msa0311720 | 0.827272 | 1.714758e-54 | -8.615850e-47 |
| Msa0162430 | Msa0315680 | 0.837682 | 4.499273e-57 | -8.615850e-47 |
| Msa0162430 | Msa0315690 | 0.801693 | 7.980975e-49 | -8.615850e-47 |
| Msa0162430 | Msa0320800 | 0.821881 | 3.188841e-53 | -8.615850e-47 |
| Msa0162430 | Msa0324240 | 0.826922 | 2.079637e-54 | -8.615850e-47 |
| Msa0162430 | Msa0324890 | 0.807554 | 4.776758e-50 | -8.615850e-47 |
| Msa0162430 | Msa0328390 | 0.804238 | 2.378154e-49 | -8.615850e-47 |
| Msa0162430 | Msa0339910 | 0.819612 | 1.060084e-52 | -8.615850e-47 |
| Msa0162430 | Msa0341840 | 0.805765 | 1.139620e-49 | -8.615850e-47 |
| Msa0162430 | Msa0342010 | 0.816272 | 6.024690e-52 | -8.615850e-47 |
| Msa0162430 | Msa0346910 | 0.817922 | 2.565233e-52 | -8.615850e-47 |
| Msa0162430 | Msa0347950 | 0.828589 | 8.265254e-55 | -8.615850e-47 |
| Msa0162430 | Msa0347990 | 0.826133 | 3.206016e-54 | -8.615850e-47 |
| Msa0162430 | Msa0362890 | 0.820942 | 5.254207e-53 | -8.615850e-47 |
| Msa0162430 | Msa0366210 | 0.813422 | 2.579781e-51 | -8.615850e-47 |
| Msa0162430 | Msa0376020 | 0.819026 | 1.441369e-52 | -8.615850e-47 |
| Msa0162430 | Msa0377440 | 0.811627 | 6.369803e-51 | -8.615850e-47 |
| Msa0162430 | Msa0378970 | 0.815850 | 7.484466e-52 | -8.615850e-47 |
| Msa0162430 | Msa0382370 | 0.802050 | 6.742973e-49 | -8.615850e-47 |
| Msa0162430 | Msa0387050 | 0.802547 | 5.327038e-49 | -8.615850e-47 |
| Msa0162430 | Msa0388730 | 0.803525 | 3.344640e-49 | -8.615850e-47 |
| Msa0162430 | Msa0389910 | 0.833865 | 4.171654e-56 | -8.615850e-47 |
| Msa0162430 | Msa0392270 | 0.814872 | 1.234529e-51 | -8.615850e-47 |
| Msa0162430 | Msa0395980 | 0.841263 | 5.283076e-58 | -8.615850e-47 |
| Msa0162430 | Msa0398200 | 0.805302 | 1.425552e-49 | -8.615850e-47 |
| Msa0162430 | Msa0403490 | 0.825404 | 4.775165e-54 | -8.615850e-47 |
| Msa0162430 | Msa0414140 | 0.822223 | 2.656674e-53 | -8.615850e-47 |
| Msa0162430 | Msa0423840 | 0.807052 | 6.100613e-50 | -8.615850e-47 |
| Msa0162430 | Msa0428580 | 0.812945 | 3.283012e-51 | -8.615850e-47 |
| Msa0162430 | Msa0430060 | 0.800352 | 1.500416e-48 | -8.615850e-47 |
| Msa0162430 | Msa0430150 | 0.801410 | 9.123282e-49 | -8.615850e-47 |
| Msa0162430 | Msa0432160 | 0.817433 | 3.306319e-52 | -8.615850e-47 |
| Msa0162430 | Msa0432170 | 0.818762 | 1.655305e-52 | -8.615850e-47 |
| Msa0162430 | Msa0438040 | 0.806893 | 6.594908e-50 | -8.615850e-47 |
| Msa0162430 | Msa0440510 | 0.803734 | 3.026733e-49 | -8.615850e-47 |
| Msa0162430 | Msa0455760 | 0.820265 | 7.513404e-53 | -8.615850e-47 |
| Msa0162430 | Msa0473330 | 0.808314 | 3.290753e-50 | -8.615850e-47 |
| Msa0162430 | Msa0473980 | 0.816315 | 5.893291e-52 | -8.615850e-47 |
| Msa0162430 | Msa0474940 | 0.819595 | 1.069245e-52 | -8.615850e-47 |
| Msa0162430 | Msa0476680 | 0.822150 | 2.763604e-53 | -8.615850e-47 |
| Msa0162430 | Msa0477620 | 0.817340 | 3.469990e-52 | -8.615850e-47 |
| Msa0162430 | Msa0480780 | 0.829816 | 4.165669e-55 | -8.615850e-47 |
| Msa0162430 | Msa0481280 | 0.801545 | 8.561214e-49 | -8.615850e-47 |
| Msa0162430 | Msa0486690 | 0.812838 | 3.465187e-51 | -8.615850e-47 |
| Msa0162430 | Msa0487720 | 0.818536 | 1.862220e-52 | -8.615850e-47 |
| Msa0162430 | Msa0491000 | 0.825593 | 4.307657e-54 | -8.615850e-47 |
| Msa0162430 | Msa0516020 | 0.817696 | 2.884137e-52 | -8.615850e-47 |
| Msa0162430 | Msa0521010 | 0.818671 | 1.735649e-52 | -8.615850e-47 |
| Msa0162430 | Msa0523050 | 0.822413 | 2.400957e-53 | -8.615850e-47 |
| Msa0162430 | Msa0526020 | 0.817216 | 3.699123e-52 | -8.615850e-47 |
| Msa0162430 | Msa0560500 | 0.811440 | 6.992509e-51 | -8.615850e-47 |
| Msa0162430 | Msa0566350 | 0.821350 | 4.231278e-53 | -8.615850e-47 |
| Msa0162430 | Msa0566750 | 0.812905 | 3.350457e-51 | -8.615850e-47 |
| Msa0162430 | Msa0576680 | 0.807900 | 4.032213e-50 | -8.615850e-47 |
| Msa0162430 | Msa0579200 | 0.804989 | 1.657127e-49 | -8.615850e-47 |
| Msa0162430 | Msa0581400 | 0.808001 | 3.838021e-50 | -8.615850e-47 |
| Msa0162430 | Msa0618950 | 0.801647 | 8.158604e-49 | -8.615850e-47 |
| Msa0162430 | Msa0621600 | 0.827967 | 1.167557e-54 | -8.615850e-47 |
| Msa0162430 | Msa0622120 | 0.819508 | 1.119195e-52 | -8.615850e-47 |
| Msa0162430 | Msa0623990 | 0.829617 | 4.657121e-55 | -8.615850e-47 |
| Msa0162430 | Msa0624060 | 0.847370 | 1.207077e-59 | -8.615850e-47 |
| Msa0162430 | Msa0641730 | 0.812161 | 4.872784e-51 | -8.615850e-47 |
| Msa0162430 | Msa0645530 | 0.828626 | 8.098983e-55 | -8.615850e-47 |
| Msa0162430 | Msa0651560 | 0.806327 | 8.681159e-50 | -8.615850e-47 |
| Msa0162430 | Msa0652690 | 0.828871 | 7.063674e-55 | -8.615850e-47 |
| Msa0162430 | Msa0676130 | 0.839077 | 1.966231e-57 | -8.615850e-47 |
| Msa0162430 | Msa0676180 | 0.839734 | 1.327143e-57 | -8.615850e-47 |
| Msa0162430 | Msa0685090 | 0.828764 | 7.497811e-55 | -8.615850e-47 |
| Msa0162430 | Msa0689250 | 0.801625 | 8.241521e-49 | -8.615850e-47 |
| Msa0162430 | Msa0704920 | 0.806360 | 8.544294e-50 | -8.615850e-47 |
| Msa0162430 | Msa0705390 | 0.823429 | 1.391694e-53 | -8.615850e-47 |
| Msa0162430 | Msa0712560 | 0.813997 | 1.927814e-51 | -8.615850e-47 |
| Msa0162430 | Msa0733010 | 0.813814 | 2.115048e-51 | -8.615850e-47 |
| Msa0162430 | Msa0733250 | 0.818861 | 1.571161e-52 | -8.615850e-47 |
| Msa0162430 | Msa0738030 | 0.801054 | 1.079229e-48 | -8.615850e-47 |
| Msa0162430 | Msa0741070 | 0.824163 | 9.364743e-54 | -8.615850e-47 |
| Msa0162430 | Msa0749440 | 0.808316 | 3.288803e-50 | -8.615850e-47 |
| Msa0162430 | Msa0756380 | 0.812406 | 4.307429e-51 | -8.615850e-47 |
| Msa0162430 | Msa0763890 | 0.830524 | 2.798342e-55 | -8.615850e-47 |
| Msa0162430 | Msa0763920 | 0.845291 | 4.451287e-59 | -8.615850e-47 |
| Msa0162430 | Msa0780280 | 0.807626 | 4.612033e-50 | -8.615850e-47 |
| Msa0162430 | Msa0789560 | 0.825899 | 3.645170e-54 | -8.615850e-47 |
| Msa0162430 | Msa0791090 | 0.815210 | 1.038930e-51 | -8.615850e-47 |
| Msa0162430 | Msa0797770 | 0.833621 | 4.801466e-56 | -8.615850e-47 |
| Msa0162430 | Msa0821800 | 0.800831 | 1.198482e-48 | -8.615850e-47 |
| Msa0162430 | Msa0835230 | 0.819469 | 1.142381e-52 | -8.615850e-47 |
| Msa0162430 | Msa0844110 | 0.826291 | 2.941074e-54 | -8.615850e-47 |
| Msa0162430 | Msa0861830 | 0.800365 | 1.491583e-48 | -8.615850e-47 |
| Msa0162430 | Msa0873860 | 0.802528 | 5.374279e-49 | -8.615850e-47 |
| Msa0162430 | Msa0899970 | 0.818969 | 1.485071e-52 | -8.615850e-47 |
| Msa0162430 | Msa0909770 | 0.813816 | 2.113697e-51 | -8.615850e-47 |
| Msa0162430 | Msa0921420 | 0.800441 | 1.439277e-48 | -8.615850e-47 |
| Msa0162430 | Msa0945240 | 0.834305 | 3.235780e-56 | -8.615850e-47 |
| Msa0162430 | Msa0958030 | 0.805610 | 1.228245e-49 | -8.615850e-47 |
| Msa0162430 | Msa0965080 | 0.800319 | 1.523627e-48 | -8.615850e-47 |
| Msa0162430 | Msa0965290 | 0.809997 | 1.434734e-50 | -8.615850e-47 |
| Msa0162430 | Msa0985220 | 0.825699 | 4.065922e-54 | -8.615850e-47 |
| Msa0162430 | Msa0986510 | 0.810778 | 9.732283e-51 | -8.615850e-47 |
| Msa0162430 | Msa0992580 | 0.809571 | 1.771429e-50 | -8.615850e-47 |
| Msa0162430 | Msa0992600 | 0.818454 | 1.943517e-52 | -8.615850e-47 |
| Msa0162430 | Msa0999680 | 0.807721 | 4.401908e-50 | -8.615850e-47 |
| Msa0162430 | Msa1011090 | 0.801191 | 1.011611e-48 | -8.615850e-47 |
| Msa0162430 | Msa1034500 | 0.815594 | 8.533778e-52 | -8.615850e-47 |
| Msa0162430 | Msa1036740 | 0.802471 | 5.524107e-49 | -8.615850e-47 |
| Msa0162430 | Msa1077070 | 0.818874 | 1.561054e-52 | -8.615850e-47 |
| Msa0162430 | Msa1080270 | 0.807993 | 3.852260e-50 | -8.615850e-47 |
| Msa0162430 | Msa1098890 | 0.817791 | 2.745157e-52 | -8.615850e-47 |
| Msa0162430 | Msa1122150 | 0.827521 | 1.494217e-54 | -8.615850e-47 |
| Msa0162430 | Msa1122780 | 0.810508 | 1.112999e-50 | -8.615850e-47 |
| Msa0162430 | Msa1126240 | 0.802604 | 5.184871e-49 | -8.615850e-47 |
| Msa0162430 | Msa1127430 | 0.812328 | 4.479939e-51 | -8.615850e-47 |
| Msa0162430 | Msa1130530 | 0.804610 | 1.988567e-49 | -8.615850e-47 |
| Msa0162430 | Msa1137780 | 0.801133 | 1.039596e-48 | -8.615850e-47 |
| Msa0162430 | Msa1144040 | 0.814031 | 1.894805e-51 | -8.615850e-47 |
| Msa0162430 | Msa1160560 | 0.804180 | 2.445118e-49 | -8.615850e-47 |
| Msa0162430 | Msa1161810 | 0.821932 | 3.104332e-53 | -8.615850e-47 |
| Msa0162430 | Msa1163870 | 0.811646 | 6.309835e-51 | -8.615850e-47 |
| Msa0162430 | Msa1183890 | 0.812599 | 3.909301e-51 | -8.615850e-47 |
| Msa0162430 | Msa1203010 | 0.814752 | 1.313104e-51 | -8.615850e-47 |
| Msa0162430 | Msa1205370 | 0.807044 | 6.126120e-50 | -8.615850e-47 |
| Msa0162430 | Msa1209190 | 0.820508 | 6.608242e-53 | -8.615850e-47 |
| Msa0162430 | Msa1211340 | 0.818092 | 2.348010e-52 | -8.615850e-47 |
| Msa0162430 | Msa1236110 | -0.812122 | 4.969860e-51 | -8.615850e-47 |
| Msa0162430 | Msa1255290 | 0.806949 | 6.415396e-50 | -8.615850e-47 |
| Msa0162430 | Msa1259640 | 0.812835 | 3.471796e-51 | -8.615850e-47 |
| Msa0162430 | Msa1283740 | 0.806136 | 9.525735e-50 | -8.615850e-47 |
| Msa0162430 | Msa1304810 | 0.804226 | 2.391111e-49 | -8.615850e-47 |
| Msa0162430 | Msa1329790 | 0.816775 | 4.646306e-52 | -8.615850e-47 |
| Msa0162430 | Msa1332050 | 0.809203 | 2.125426e-50 | -8.615850e-47 |
| Msa0162430 | Msa1333730 | 0.810195 | 1.300670e-50 | -8.615850e-47 |
| Msa0162430 | Msa1336040 | 0.832977 | 6.946212e-56 | -8.615850e-47 |
| Msa0162430 | Msa1337480 | 0.808811 | 2.578416e-50 | -8.615850e-47 |
| Msa0162430 | Msa1340200 | 0.813220 | 2.858463e-51 | -8.615850e-47 |
| Msa0162430 | Msa1349450 | 0.809548 | 1.791678e-50 | -8.615850e-47 |
| Msa0162430 | Msa1358240 | 0.809945 | 1.471937e-50 | -8.615850e-47 |
| Msa0162430 | Msa1359560 | 0.830461 | 2.899382e-55 | -8.615850e-47 |
| Msa0162430 | Msa1368360 | 0.822030 | 2.945746e-53 | -8.615850e-47 |
| Msa0162430 | Msa1371940 | 0.810044 | 1.401959e-50 | -8.615850e-47 |
| Msa0162430 | Msa1372240 | 0.833692 | 4.607255e-56 | -8.615850e-47 |
| Msa0162430 | Msa1372290 | 0.803365 | 3.609931e-49 | -8.615850e-47 |
| Msa0162430 | Msa1377790 | 0.810021 | 1.417811e-50 | -8.615850e-47 |
| Msa0162430 | Msa1378410 | 0.847776 | 9.337149e-60 | -8.615850e-47 |
| Msa0162430 | Msa1383740 | 0.812896 | 3.365392e-51 | -8.615850e-47 |
| Msa0162430 | Msa1400120 | 0.816501 | 5.353546e-52 | -8.615850e-47 |
| Msa0162430 | Msa1401460 | 0.850411 | 1.728479e-60 | -8.615850e-47 |
| Msa0162430 | Msa1409560 | 0.820840 | 5.545985e-53 | -8.615850e-47 |
| Msa0162430 | Msa1413380 | 0.806051 | 9.923325e-50 | -8.615850e-47 |
| Msa0162430 | Msa1419840 | 0.800134 | 1.661685e-48 | -8.615850e-47 |
| Msa0162430 | Msa1426570 | 0.801522 | 8.653315e-49 | -8.615850e-47 |
| Msa0162430 | Msa1431170 | 0.806611 | 7.564077e-50 | -8.615850e-47 |
| Msa0162430 | Msa1437330 | 0.879512 | 1.173476e-69 | -8.615850e-47 |
| Msa0162430 | Msa1438520 | 0.841866 | 3.663377e-58 | -8.615850e-47 |
| Msa0162430 | Msa1446080 | 0.806233 | 9.088212e-50 | -8.615850e-47 |
| Msa0162430 | Msa1448490 | 0.808047 | 3.751362e-50 | -8.615850e-47 |
| Msa0162430 | Msa1450720 | 0.821846 | 3.249346e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162430 | MtrunA17_Chr1g0176591 | 93.750 | 704 | 41 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162430 | AT5G26760.2 | 41.261 | 761 | 364 | 14 | 20 | 723 | 1 | 735 | 1.60e-172 | 512 |
| Msa0162430 | AT5G26760.1 | 48.571 | 350 | 170 | 4 | 376 | 723 | 89 | 430 | 7.40e-105 | 327 |
Find 152 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGAATTTCCATCATAAA+TGG | 0.132481 | 1_4:+39354667 | Msa0162430:three_prime_UTR |
| CTTTGTGCAGTGAAAGAATT+TGG | 0.146405 | 1_4:+39351993 | Msa0162430:CDS |
| TTGGAACCAATGGAAAATTT+TGG | 0.149339 | 1_4:+39350938 | Msa0162430:CDS |
| TCTTCTTTGGCATATATATA+TGG | 0.189186 | 1_4:+39352600 | Msa0162430:CDS |
| ATTCAATTGCTTGTTCAATT+AGG | 0.231043 | 1_4:-39351863 | None:intergenic |
| GAAGAATTTCTATCAGTTAA+TGG | 0.239586 | 1_4:+39352642 | Msa0162430:CDS |
| AACATTGGCAGAATTTAAAT+TGG | 0.247143 | 1_4:-39351829 | None:intergenic |
| GAATCATTGTCTCTTTGTTT+TGG | 0.252817 | 1_4:-39351079 | None:intergenic |
| AACAATGTTCTTAGGTTGTT+TGG | 0.256285 | 1_4:+39350905 | Msa0162430:CDS |
| AATGATTATAAAAGTTTAAT+TGG | 0.257744 | 1_4:+39351390 | Msa0162430:CDS |
| CCATATTGGAGAAGCCAAAA+AGG | 0.270922 | 1_4:+39351523 | Msa0162430:CDS |
| GCATCAGAAGCAGTTGCTTC+TGG | 0.271175 | 1_4:+39352119 | Msa0162430:CDS |
| GTGGATAACATCATCTTCTT+TGG | 0.277954 | 1_4:+39352587 | Msa0162430:CDS |
| CAAACAGCTGGTCTTCTCTT+TGG | 0.278459 | 1_4:-39350613 | None:intergenic |
| TCGGAAACTCCAGGTTTCTT+TGG | 0.282638 | 1_4:-39352359 | None:intergenic |
| AGAATTTGGAAACATTAAAA+AGG | 0.285942 | 1_4:+39352007 | Msa0162430:CDS |
| AAGTATCATATAGATAAAAT+TGG | 0.288959 | 1_4:-39354849 | None:intergenic |
| TTAGATTTAAGAGAAGATTT+TGG | 0.295505 | 1_4:-39351900 | None:intergenic |
| AGAAACTGAACAATGTTCTT+AGG | 0.303436 | 1_4:+39350897 | Msa0162430:CDS |
| GGCCACGGTGTACTTATAAT+TGG | 0.312064 | 1_4:-39354809 | None:intergenic |
| TGCCACTGCAGAGGTGTCTT+TGG | 0.317308 | 1_4:+39351015 | Msa0162430:CDS |
| AAGAATTTCTATCAGTTAAT+GGG | 0.321763 | 1_4:+39352643 | Msa0162430:CDS |
| GATGAGAAAATCAACAGTTC+TGG | 0.329888 | 1_4:+39351960 | Msa0162430:CDS |
| AACTCAGTCGCTCTGTTACT+TGG | 0.346040 | 1_4:+39351934 | Msa0162430:CDS |
| ACAAAGAGACAATGATTCTA+AGG | 0.351983 | 1_4:+39351084 | Msa0162430:CDS |
| TTGCAATTGGCCCTCCTTGA+TGG | 0.353204 | 1_4:+39350587 | Msa0162430:CDS |
| TCAACACTCCAATGCTTTGA+AGG | 0.354297 | 1_4:-39354759 | None:intergenic |
| TAACCCTCAATTGCATTTGA+TGG | 0.359086 | 1_4:-39351052 | None:intergenic |
| GTTCTGAGTGGTTCACAAAT+AGG | 0.360354 | 1_4:+39354559 | Msa0162430:CDS |
| GAAATAAAACAAACATTAGT+TGG | 0.365903 | 1_4:+39352711 | Msa0162430:CDS |
| CATTGCACCTCTCATCTTGC+AGG | 0.368177 | 1_4:-39350862 | None:intergenic |
| CGACTTGCCACGATTAGCTT+TGG | 0.375326 | 1_4:-39351367 | None:intergenic |
| ATCACATTCTCTTTCTGAAA+TGG | 0.377271 | 1_4:-39351721 | None:intergenic |
| ACATCAATTACCAGCATCAT+TGG | 0.377762 | 1_4:-39352153 | None:intergenic |
| AATTAAGCCGCCATCCATAT+TGG | 0.396147 | 1_4:+39351509 | Msa0162430:CDS |
| ACAGTCAAACTAAAACCTTC+TGG | 0.396644 | 1_4:-39352425 | None:intergenic |
| GAACTTAATCAAACACGTAT+AGG | 0.396804 | 1_4:+39354700 | Msa0162430:three_prime_UTR |
| CTTCTTTGGCATATATATAT+GGG | 0.399659 | 1_4:+39352601 | Msa0162430:CDS |
| TCCTCTGTCGCTAGGGGCCA+CGG | 0.401182 | 1_4:-39354824 | None:intergenic |
| AAAATTCAGTTACTCTGAAA+TGG | 0.402967 | 1_4:+39352336 | Msa0162430:CDS |
| AGAGTCAAACAAATCAAATT+CGG | 0.409918 | 1_4:-39352378 | None:intergenic |
| TTCTAGAAACTTGCTTCTGA+TGG | 0.413119 | 1_4:+39350523 | Msa0162430:CDS |
| CACTGTTTCATTCTGAATGC+TGG | 0.415973 | 1_4:-39353556 | None:intergenic |
| CTGCTGTTGTTGAAGAGCTC+AGG | 0.417817 | 1_4:+39352754 | Msa0162430:CDS |
| CGCTTGCTCTAATATATCTA+CGG | 0.420079 | 1_4:-39352787 | None:intergenic |
| ATTGAATTTCCATCATAAAT+GGG | 0.426414 | 1_4:+39354668 | Msa0162430:three_prime_UTR |
| TCTAATATATCTACGGGTAT+TGG | 0.431896 | 1_4:-39352780 | None:intergenic |
| TAGTGTTTCGAAAGTATCAT+TGG | 0.437175 | 1_4:+39351458 | Msa0162430:CDS |
| ATGCAAAATTGATATTCAAA+TGG | 0.438185 | 1_4:+39354896 | Msa0162430:three_prime_UTR |
| CAATAGAAAACACAATAACT+TGG | 0.448887 | 1_4:-39354927 | None:intergenic |
| TTTGCTGTTAATTACACAAC+CGG | 0.450833 | 1_4:-39350825 | None:intergenic |
| ATGAGAAAATCAACAGTTCT+GGG | 0.455398 | 1_4:+39351961 | Msa0162430:CDS |
| AGTGTTTCGAAAGTATCATT+GGG | 0.455834 | 1_4:+39351459 | Msa0162430:CDS |
| CTGAAATGGCCAAAGAAACC+TGG | 0.462966 | 1_4:+39352350 | Msa0162430:CDS |
| TAGATATCGGATTTCATTGA+AGG | 0.467664 | 1_4:+39350757 | Msa0162430:CDS |
| GAAGACCAGCTGTTTGCAGC+TGG | 0.470370 | 1_4:+39350620 | Msa0162430:CDS |
| TGATACTTTAATGCTGTTAG+TGG | 0.477402 | 1_4:+39354864 | Msa0162430:three_prime_UTR |
| AGTACTTTCCTCAACAGCAT+TGG | 0.477464 | 1_4:-39352288 | None:intergenic |
| TGTGAAAATGACAGTGGAAA+AGG | 0.478655 | 1_4:+39355029 | Msa0162430:three_prime_UTR |
| ATTGGATTCCTCTGTCGCTA+GGG | 0.478912 | 1_4:-39354831 | None:intergenic |
| AAGCAACTGCTTCTGATGCT+TGG | 0.479108 | 1_4:-39352115 | None:intergenic |
| AAATTTGAACTTGGAACCAA+TGG | 0.481401 | 1_4:+39350928 | Msa0162430:CDS |
| GTACTTTCCTCAACAGCATT+GGG | 0.483000 | 1_4:-39352287 | None:intergenic |
| GAACATTGTTCAGTTTCTCC+AGG | 0.487506 | 1_4:-39350892 | None:intergenic |
| TAGGAATTTCTCTTCAACAT+TGG | 0.487770 | 1_4:-39351844 | None:intergenic |
| ACTCAGTCGCTCTGTTACTT+GGG | 0.488356 | 1_4:+39351935 | Msa0162430:CDS |
| GGCAGAATTTAAATTGGAAG+TGG | 0.495798 | 1_4:-39351823 | None:intergenic |
| GCTGGATACAATGTCGTTTG+TGG | 0.496169 | 1_4:+39353525 | Msa0162430:CDS |
| CTTCTCTTTGGATACCATCA+AGG | 0.498483 | 1_4:-39350601 | None:intergenic |
| TGGACCATCAAATGCAATTG+AGG | 0.498530 | 1_4:+39351048 | Msa0162430:CDS |
| CATCAATTACCAGCATCATT+GGG | 0.503869 | 1_4:-39352152 | None:intergenic |
| TTTGGCTTCTCCAATATGGA+TGG | 0.512435 | 1_4:-39351519 | None:intergenic |
| GTGTCTTTGGAACAGTGGGC+TGG | 0.514994 | 1_4:+39351028 | Msa0162430:CDS |
| TGATGTTATCCACGAAAAGA+AGG | 0.516826 | 1_4:-39352577 | None:intergenic |
| AATTGGATTCCTCTGTCGCT+AGG | 0.517271 | 1_4:-39354832 | None:intergenic |
| CAGATCCAGCTGCAAACAGC+TGG | 0.520179 | 1_4:-39350625 | None:intergenic |
| GGGTTGGCAATAAAGTGGTC+AGG | 0.521721 | 1_4:+39351544 | Msa0162430:CDS |
| TTGGGGCAAACAGATACAAC+TGG | 0.522191 | 1_4:+39351477 | Msa0162430:CDS |
| ATGCTTTGAAGGTAAAAGAA+AGG | 0.523749 | 1_4:-39354748 | None:intergenic |
| AAGGATTTCGTTGTACCACT+TGG | 0.526604 | 1_4:+39354604 | Msa0162430:CDS |
| GACTCGGATCCCAATGATGC+TGG | 0.527843 | 1_4:+39352143 | Msa0162430:CDS |
| AGAGGTGTCTTTGGAACAGT+GGG | 0.528299 | 1_4:+39351024 | Msa0162430:CDS |
| AGCAGTTGCTTCTGGAGACT+CGG | 0.529316 | 1_4:+39352127 | Msa0162430:CDS |
| GTCCTCGGAAGGGTAGATAT+CGG | 0.529838 | 1_4:+39350744 | Msa0162430:CDS |
| GATACTTTAATGCTGTTAGT+GGG | 0.530504 | 1_4:+39354865 | Msa0162430:three_prime_UTR |
| GCTTGCTCTAATATATCTAC+GGG | 0.532496 | 1_4:-39352786 | None:intergenic |
| CCTCATTTCTCTTCTCAAAG+TGG | 0.532595 | 1_4:+39354634 | Msa0162430:CDS |
| ACATCCTCCCAATGCTGTTG+AGG | 0.537391 | 1_4:+39352280 | Msa0162430:CDS |
| AAATCAAATTCGGAAACTCC+AGG | 0.537463 | 1_4:-39352368 | None:intergenic |
| GCATTCCACATAGTAGCAAA+AGG | 0.537790 | 1_4:-39352555 | None:intergenic |
| CTTTGCCAACTGATCGTCCT+CGG | 0.538022 | 1_4:+39350729 | Msa0162430:CDS |
| TGCTTCTGATGCTTGGCTCA+AGG | 0.539836 | 1_4:-39352108 | None:intergenic |
| GTTGTTTGGAAATTTGAACT+TGG | 0.540609 | 1_4:+39350919 | Msa0162430:CDS |
| TCAACAGCATTGGGAGGATG+TGG | 0.540662 | 1_4:-39352278 | None:intergenic |
| GCCAACTGATCGTCCTCGGA+AGG | 0.542811 | 1_4:+39350733 | Msa0162430:CDS |
| AGCAAAATTGTCTTGACAGA+TGG | 0.547346 | 1_4:+39352678 | Msa0162430:CDS |
| AAGTTTCTAGAAATAGCATA+AGG | 0.550886 | 1_4:-39350512 | None:intergenic |
| CTGAGCTCTTCAACAACAGC+AGG | 0.551817 | 1_4:-39352753 | None:intergenic |
| CCCTTCCGAGGACGATCAGT+TGG | 0.553458 | 1_4:-39350734 | None:intergenic |
| GGCTTCTCCAATATGGATGG+CGG | 0.555808 | 1_4:-39351516 | None:intergenic |
| TCTTGTGCAGTATCGGAAGC+AGG | 0.557558 | 1_4:+39352242 | Msa0162430:intron |
| GGACCATCAAATGCAATTGA+GGG | 0.558886 | 1_4:+39351049 | Msa0162430:CDS |
| AAATCTTCTCTTAAATCTAA+CGG | 0.559728 | 1_4:+39351903 | Msa0162430:CDS |
| ATGAAGATGTTGTAACTGAA+AGG | 0.563773 | 1_4:+39350666 | Msa0162430:CDS |
| TGGTTTGATGCTCCACCAGA+AGG | 0.577882 | 1_4:+39352410 | Msa0162430:CDS |
| CAGGAGGGACTTGTTTCTCA+AGG | 0.580423 | 1_4:+39353654 | Msa0162430:CDS |
| TTATCTCATACATGACGGAC+AGG | 0.585032 | 1_4:+39353635 | Msa0162430:CDS |
| AGGTCCATCGCTAATTTGTG+TGG | 0.588401 | 1_4:+39350686 | Msa0162430:CDS |
| TTCAACAGAAGGATCATGAG+AGG | 0.591346 | 1_4:-39351676 | None:intergenic |
| CTTTGGCATATATATATGGG+AGG | 0.592014 | 1_4:+39352604 | Msa0162430:CDS |
| CAGAGGTGTCTTTGGAACAG+TGG | 0.592215 | 1_4:+39351023 | Msa0162430:CDS |
| CAGAACAGAATGATTCTGAA+AGG | 0.593966 | 1_4:+39351745 | Msa0162430:CDS |
| CTCATACATGACGGACAGGA+GGG | 0.594470 | 1_4:+39353639 | Msa0162430:CDS |
| AAGTACCTCAACAAAAGAGA+AGG | 0.595618 | 1_4:+39351620 | Msa0162430:CDS |
| AAAACATGTAAGTTTCGTGT+AGG | 0.601008 | 1_4:-39350796 | None:intergenic |
| CATCGATTAATACAAAATGT+CGG | 0.605502 | 1_4:-39354953 | None:intergenic |
| ACCGTGGCCCCTAGCGACAG+AGG | 0.607010 | 1_4:+39354823 | Msa0162430:three_prime_UTR |
| GAAATCGATACAACTCAAAG+AGG | 0.607557 | 1_4:+39351767 | Msa0162430:CDS |
| TTCCAAAGACACCTCTGCAG+TGG | 0.615979 | 1_4:-39351017 | None:intergenic |
| TTTGGCATATATATATGGGA+GGG | 0.616710 | 1_4:+39352605 | Msa0162430:CDS |
| GATTTCATTGAAGGAGCACA+AGG | 0.625957 | 1_4:+39350766 | Msa0162430:CDS |
| GTCAAACTAAAACCTTCTGG+TGG | 0.626841 | 1_4:-39352422 | None:intergenic |
| TCTCATACATGACGGACAGG+AGG | 0.627733 | 1_4:+39353638 | Msa0162430:CDS |
| TACTCTTATCTCATACATGA+CGG | 0.628188 | 1_4:+39353630 | Msa0162430:CDS |
| CTGGGAGCCTGCAAGATGAG+AGG | 0.628600 | 1_4:+39350855 | Msa0162430:CDS |
| AACAGAAACTGCCACTGCAG+AGG | 0.631088 | 1_4:+39351006 | Msa0162430:CDS |
| CAGAATGAAACAGTGGCAAG+TGG | 0.634857 | 1_4:+39353564 | Msa0162430:CDS |
| GGCAAAGCATTGCGGCACAA+TGG | 0.636176 | 1_4:-39350713 | None:intergenic |
| CCACTTTGAGAAGAGAAATG+AGG | 0.636699 | 1_4:-39354634 | None:intergenic |
| GAGTGGTTCACAAATAGGCA+AGG | 0.636728 | 1_4:+39354564 | Msa0162430:CDS |
| CTCTTTGGATACCATCAAGG+AGG | 0.637806 | 1_4:-39350598 | None:intergenic |
| TTTCTGAAATGGTAATCGAG+TGG | 0.640137 | 1_4:-39351710 | None:intergenic |
| CCAACTGATCGTCCTCGGAA+GGG | 0.642742 | 1_4:+39350734 | Msa0162430:CDS |
| GGTCCATCGCTAATTTGTGT+GGG | 0.648300 | 1_4:+39350687 | Msa0162430:CDS |
| ATACCCACACAAATTAGCGA+TGG | 0.649576 | 1_4:-39350690 | None:intergenic |
| TTGGATTCCTCTGTCGCTAG+GGG | 0.650829 | 1_4:-39354830 | None:intergenic |
| CTTTCCTCAACAGCATTGGG+AGG | 0.652955 | 1_4:-39352284 | None:intergenic |
| TCTTTGGATACCATCAAGGA+GGG | 0.655363 | 1_4:-39350597 | None:intergenic |
| GTCATGTATGAGATAAGAGT+AGG | 0.656182 | 1_4:-39353628 | None:intergenic |
| AAATGAGGTGCTCGACCAAG+TGG | 0.656919 | 1_4:-39354619 | None:intergenic |
| GATCAGTTGGCAAAGCATTG+CGG | 0.658842 | 1_4:-39350721 | None:intergenic |
| AGATATATTAGAGCAAGCGA+TGG | 0.661113 | 1_4:+39352791 | Msa0162430:CDS |
| TGTTTGACTCTGAAGACACG+TGG | 0.666494 | 1_4:+39352390 | Msa0162430:CDS |
| ATCCGATATCTACCCTTCCG+AGG | 0.667151 | 1_4:-39350746 | None:intergenic |
| TTGGTGAAGCAGGTTCTGAG+TGG | 0.679031 | 1_4:+39354547 | Msa0162430:intron |
| GTGTTTCGAAAGTATCATTG+GGG | 0.679627 | 1_4:+39351460 | Msa0162430:CDS |
| GCTGTTAATTACACAACCGG+AGG | 0.683543 | 1_4:-39350822 | None:intergenic |
| GCAGGGTCCAAAGCTAATCG+TGG | 0.689841 | 1_4:+39351360 | Msa0162430:intron |
| CAGCATTCAGAATGAAACAG+TGG | 0.697410 | 1_4:+39353557 | Msa0162430:CDS |
| GGCATATGTGAAAATGACAG+TGG | 0.700784 | 1_4:+39355023 | Msa0162430:three_prime_UTR |
| TGCTGTTGAGGAAAGTACTG+TGG | 0.706731 | 1_4:+39352292 | Msa0162430:CDS |
| ATCCAATTATAAGTACACCG+TGG | 0.818278 | 1_4:+39354807 | Msa0162430:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTATAAAAGTTTAAT+TGG | + | chr1_4:39351390-39351409 | Msa0162430:CDS | 10.0% |
| !!! | TATTATTTTACTCTATAATT+TGG | + | chr1_4:39354189-39354208 | Msa0162430:intron | 10.0% |
| !! | AGGATTTCAAAAAATTATAT+TGG | - | chr1_4:39351152-39351171 | None:intergenic | 15.0% |
| !! | ATTAAATATTTATTACACTC+TGG | + | chr1_4:39352861-39352880 | Msa0162430:intron | 15.0% |
| !!! | TAAAACATTGCTTTATTAAT+TGG | + | chr1_4:39353152-39353171 | Msa0162430:intron | 15.0% |
| !!! | AAACATTATAAATTTTCGAA+TGG | + | chr1_4:39353195-39353214 | Msa0162430:intron | 15.0% |
| !!! | TTTCTAAATTTTGAAAAAGA+AGG | - | chr1_4:39353358-39353377 | None:intergenic | 15.0% |
| !! | TACTAGCAAATAAAATAATA+AGG | - | chr1_4:39353918-39353937 | None:intergenic | 15.0% |
| !!! | TATTTTATTTGCTAGTATTT+TGG | + | chr1_4:39353921-39353940 | Msa0162430:intron | 15.0% |
| !! | AAAACTGAAAATAATAAGAT+AGG | - | chr1_4:39354456-39354475 | None:intergenic | 15.0% |
| !! | AAGTATCATATAGATAAAAT+TGG | - | chr1_4:39354852-39354871 | None:intergenic | 15.0% |
| !! | TCTAAGAAAAATGCTAAAAA+AGG | + | chr1_4:39351109-39351128 | Msa0162430:CDS | 20.0% |
| !! | ATACTATAATTGTAAAGTTG+AGG | + | chr1_4:39351261-39351280 | Msa0162430:intron | 20.0% |
| !!! | TTAGATTTAAGAGAAGATTT+TGG | - | chr1_4:39351903-39351922 | None:intergenic | 20.0% |
| !! | AAATCTTCTCTTAAATCTAA+CGG | + | chr1_4:39351903-39351922 | Msa0162430:CDS | 20.0% |
| !! | AGAATTTGGAAACATTAAAA+AGG | + | chr1_4:39352007-39352026 | Msa0162430:CDS | 20.0% |
| !! | AAGAATTTCTATCAGTTAAT+GGG | + | chr1_4:39352643-39352662 | Msa0162430:CDS | 20.0% |
| !! | GAAATAAAACAAACATTAGT+TGG | + | chr1_4:39352711-39352730 | Msa0162430:CDS | 20.0% |
| !!! | TAATGACTTAGTTTAAAACA+AGG | - | chr1_4:39352845-39352864 | None:intergenic | 20.0% |
| !! | TAGAAATTTCCAAAAAATCA+TGG | + | chr1_4:39353372-39353391 | Msa0162430:intron | 20.0% |
| !! | AGAAATTTCCAAAAAATCAT+GGG | + | chr1_4:39353373-39353392 | Msa0162430:intron | 20.0% |
| !!! | TATCCATTTTTGTTTATATG+AGG | + | chr1_4:39353466-39353485 | Msa0162430:intron | 20.0% |
| !! | ATCAGAACAATATAAACAAA+TGG | - | chr1_4:39353685-39353704 | None:intergenic | 20.0% |
| !! | ATCAGAACAATATAAACAAA+CGG | - | chr1_4:39353685-39353704 | None:intergenic | 20.0% |
| !!! | TTATTTTACCCACATTAATA+TGG | + | chr1_4:39353813-39353832 | Msa0162430:intron | 20.0% |
| !!! | AAGCATTTTATAATGATATC+AGG | + | chr1_4:39353859-39353878 | Msa0162430:intron | 20.0% |
| !! | AATAAGGATTAAATGTTTGT+CGG | - | chr1_4:39353902-39353921 | None:intergenic | 20.0% |
| !!! | CATTTAGAATAAACAAACAA+AGG | - | chr1_4:39353972-39353991 | None:intergenic | 20.0% |
| !! | CACTAACAAATGTAATAATA+GGG | - | chr1_4:39354084-39354103 | None:intergenic | 20.0% |
| !! | ACACTAACAAATGTAATAAT+AGG | - | chr1_4:39354085-39354104 | None:intergenic | 20.0% |
| !!! | TATTACATTTGTTAGTGTTT+TGG | + | chr1_4:39354087-39354106 | Msa0162430:intron | 20.0% |
| !!! | TTTTATTTTGTTAAGTTTGG+AGG | - | chr1_4:39354138-39354157 | None:intergenic | 20.0% |
| !!! | GGATTTTATTTTGTTAAGTT+TGG | - | chr1_4:39354141-39354160 | None:intergenic | 20.0% |
| !! | AGTAAAATAATATCTAAGCA+TGG | - | chr1_4:39354181-39354200 | None:intergenic | 20.0% |
| !!! | ATAATTTGGTTTATCTAATG+TGG | + | chr1_4:39354203-39354222 | Msa0162430:intron | 20.0% |
| !! | CAATTACAATTTACAACTAT+TGG | - | chr1_4:39354233-39354252 | None:intergenic | 20.0% |
| !!! | GCAAGTAAATTTTATTCATA+TGG | - | chr1_4:39354310-39354329 | None:intergenic | 20.0% |
| !! | ATTGAATTTCCATCATAAAT+GGG | + | chr1_4:39354668-39354687 | Msa0162430:three_prime_UTR | 20.0% |
| !! | ATGCAAAATTGATATTCAAA+TGG | + | chr1_4:39354896-39354915 | Msa0162430:three_prime_UTR | 20.0% |
| !! | AAGTTTCTAGAAATAGCATA+AGG | - | chr1_4:39350515-39350534 | None:intergenic | 25.0% |
| ! | AACATTGGCAGAATTTAAAT+TGG | - | chr1_4:39351832-39351851 | None:intergenic | 25.0% |
| ! | ATTCAATTGCTTGTTCAATT+AGG | - | chr1_4:39351866-39351885 | None:intergenic | 25.0% |
| !! | AAAATTCAGTTACTCTGAAA+TGG | + | chr1_4:39352336-39352355 | Msa0162430:CDS | 25.0% |
| ! | AGAGTCAAACAAATCAAATT+CGG | - | chr1_4:39352381-39352400 | None:intergenic | 25.0% |
| ! | TCTTCTTTGGCATATATATA+TGG | + | chr1_4:39352600-39352619 | Msa0162430:CDS | 25.0% |
| ! | CTTCTTTGGCATATATATAT+GGG | + | chr1_4:39352601-39352620 | Msa0162430:CDS | 25.0% |
| ! | GAAGAATTTCTATCAGTTAA+TGG | + | chr1_4:39352642-39352661 | Msa0162430:CDS | 25.0% |
| ! | AATATTTATTACACTCTGGT+AGG | + | chr1_4:39352865-39352884 | Msa0162430:intron | 25.0% |
| ! | ATGCTAAAATTGATGAAACT+TGG | - | chr1_4:39353083-39353102 | None:intergenic | 25.0% |
| !!! | CAATTTTAGCATATGTGAAA+AGG | + | chr1_4:39353091-39353110 | Msa0162430:intron | 25.0% |
| ! | GAGTATAAGAAACAAAGAAA+TGG | - | chr1_4:39353315-39353334 | None:intergenic | 25.0% |
| !! | TTTCTTTGTTTCTTATACTC+TGG | + | chr1_4:39353315-39353334 | Msa0162430:intron | 25.0% |
| !! | TTTCTTATACTCTGGTTTAT+AGG | + | chr1_4:39353323-39353342 | Msa0162430:intron | 25.0% |
| ! | CATCCTCATATAAACAAAAA+TGG | - | chr1_4:39353472-39353491 | None:intergenic | 25.0% |
| !!! | TTATTTTACCCACATTACTA+TGG | + | chr1_4:39353708-39353727 | Msa0162430:intron | 25.0% |
| !!! | AAGCATTTGATAATGATATC+AGG | + | chr1_4:39353754-39353773 | Msa0162430:intron | 25.0% |
| !!! | TTTGATAATGATATCAGGTA+AGG | + | chr1_4:39353759-39353778 | Msa0162430:intron | 25.0% |
| ! | ATAAGGATTAAATGTTTGTC+GGG | - | chr1_4:39353901-39353920 | None:intergenic | 25.0% |
| !! | TTCTATCATTAAGAAAGCAT+GGG | - | chr1_4:39354028-39354047 | None:intergenic | 25.0% |
| ! | TGTAAATTGTAATTGCTATG+CGG | + | chr1_4:39354238-39354257 | Msa0162430:intron | 25.0% |
| !!! | TAATTTGTTAACCATTGTTC+TGG | + | chr1_4:39354517-39354536 | Msa0162430:intron | 25.0% |
| ! | CATTGAATTTCCATCATAAA+TGG | + | chr1_4:39354667-39354686 | Msa0162430:three_prime_UTR | 25.0% |
| ! | CAATAGAAAACACAATAACT+TGG | - | chr1_4:39354930-39354949 | None:intergenic | 25.0% |
| !! | CATCGATTAATACAAAATGT+CGG | - | chr1_4:39354956-39354975 | None:intergenic | 25.0% |
| !!! | TGCTGTTTTGAAATTGCAAT+TGG | + | chr1_4:39350574-39350593 | Msa0162430:CDS | 30.0% |
| ATGAAGATGTTGTAACTGAA+AGG | + | chr1_4:39350666-39350685 | Msa0162430:CDS | 30.0% | |
| TAGATATCGGATTTCATTGA+AGG | + | chr1_4:39350757-39350776 | Msa0162430:CDS | 30.0% | |
| AAAACATGTAAGTTTCGTGT+AGG | - | chr1_4:39350799-39350818 | None:intergenic | 30.0% | |
| !! | TTTGCTGTTAATTACACAAC+CGG | - | chr1_4:39350828-39350847 | None:intergenic | 30.0% |
| AGAAACTGAACAATGTTCTT+AGG | + | chr1_4:39350897-39350916 | Msa0162430:CDS | 30.0% | |
| ! | AACAATGTTCTTAGGTTGTT+TGG | + | chr1_4:39350905-39350924 | Msa0162430:CDS | 30.0% |
| GTTGTTTGGAAATTTGAACT+TGG | + | chr1_4:39350919-39350938 | Msa0162430:CDS | 30.0% | |
| AAATTTGAACTTGGAACCAA+TGG | + | chr1_4:39350928-39350947 | Msa0162430:CDS | 30.0% | |
| ! | TTGGAACCAATGGAAAATTT+TGG | + | chr1_4:39350938-39350957 | Msa0162430:CDS | 30.0% |
| !! | ACCAATGGAAAATTTTGGAA+AGG | + | chr1_4:39350943-39350962 | Msa0162430:CDS | 30.0% |
| ! | TCCTTTCCAAAATTTTCCAT+TGG | - | chr1_4:39350947-39350966 | None:intergenic | 30.0% |
| !! | ATGGAAAATTTTGGAAAGGA+TGG | + | chr1_4:39350947-39350966 | Msa0162430:CDS | 30.0% |
| !! | TTTTTCTGACTTGAAAATCC+AGG | + | chr1_4:39350979-39350998 | Msa0162430:CDS | 30.0% |
| !! | GAATCATTGTCTCTTTGTTT+TGG | - | chr1_4:39351082-39351101 | None:intergenic | 30.0% |
| ACAAAGAGACAATGATTCTA+AGG | + | chr1_4:39351084-39351103 | Msa0162430:CDS | 30.0% | |
| ATAAGGCTATCTAATAGTCT+AGG | - | chr1_4:39351172-39351191 | None:intergenic | 30.0% | |
| TTTGAGCAAAAAATGGCATA+AGG | - | chr1_4:39351189-39351208 | None:intergenic | 30.0% | |
| ! | AGACACTTTTGAGCAAAAAA+TGG | - | chr1_4:39351196-39351215 | None:intergenic | 30.0% |
| !!! | TGTATTCTTTGTTTTCCTGA+TGG | + | chr1_4:39351227-39351246 | Msa0162430:intron | 30.0% |
| !!! | GTATTCTTTGTTTTCCTGAT+GGG | + | chr1_4:39351228-39351247 | Msa0162430:intron | 30.0% |
| GTATATTAAAATCACCCATC+AGG | - | chr1_4:39351245-39351264 | None:intergenic | 30.0% | |
| TATTCCATTTCTCAGAACTT+AGG | - | chr1_4:39351288-39351307 | None:intergenic | 30.0% | |
| !! | TAGTGTTTCGAAAGTATCAT+TGG | + | chr1_4:39351458-39351477 | Msa0162430:CDS | 30.0% |
| !! | AGTGTTTCGAAAGTATCATT+GGG | + | chr1_4:39351459-39351478 | Msa0162430:CDS | 30.0% |
| ! | TATTTCCTTCTCTTTTGTTG+AGG | - | chr1_4:39351628-39351647 | None:intergenic | 30.0% |
| ! | ACAACTTTCTTTTCAACAGA+AGG | - | chr1_4:39351690-39351709 | None:intergenic | 30.0% |
| ! | ATCACATTCTCTTTCTGAAA+TGG | - | chr1_4:39351724-39351743 | None:intergenic | 30.0% |
| TAGGAATTTCTCTTCAACAT+TGG | - | chr1_4:39351847-39351866 | None:intergenic | 30.0% | |
| !!! | GAGAAGATTTTGGTTTAGTA+TGG | - | chr1_4:39351893-39351912 | None:intergenic | 30.0% |
| ATGAGAAAATCAACAGTTCT+GGG | + | chr1_4:39351961-39351980 | Msa0162430:CDS | 30.0% | |
| GGTAATTGATGTTTCTTTAG+AGG | + | chr1_4:39352164-39352183 | Msa0162430:intron | 30.0% | |
| TTTGGCATATATATATGGGA+GGG | + | chr1_4:39352605-39352624 | Msa0162430:CDS | 30.0% | |
| TCTAATATATCTACGGGTAT+TGG | - | chr1_4:39352783-39352802 | None:intergenic | 30.0% | |
| !!! | TTCCTTATTTTGTGTATGAG+TGG | - | chr1_4:39352970-39352989 | None:intergenic | 30.0% |
| ATAAGGAATCAACAAAACTG+TGG | + | chr1_4:39352982-39353001 | Msa0162430:intron | 30.0% | |
| AATCAACAAAACTGTGGAAA+AGG | + | chr1_4:39352988-39353007 | Msa0162430:intron | 30.0% | |
| TCCAAAAAATCATGGGTTTA+AGG | + | chr1_4:39353380-39353399 | Msa0162430:intron | 30.0% | |
| ! | TAAGTGCACAACTTTCTTTT+AGG | + | chr1_4:39353495-39353514 | Msa0162430:intron | 30.0% |
| TACTCTTATCTCATACATGA+CGG | + | chr1_4:39353630-39353649 | Msa0162430:CDS | 30.0% | |
| GATTGCTACCATATTAATGT+GGG | - | chr1_4:39353824-39353843 | None:intergenic | 30.0% | |
| AGATTGCTACCATATTAATG+TGG | - | chr1_4:39353825-39353844 | None:intergenic | 30.0% | |
| ! | TCTATCATTAAGAAAGCATG+GGG | - | chr1_4:39354027-39354046 | None:intergenic | 30.0% |
| CTTCTATCATTAAGAAAGCA+TGG | - | chr1_4:39354029-39354048 | None:intergenic | 30.0% | |
| CATGCTTTCTTAATGATAGA+AGG | + | chr1_4:39354027-39354046 | Msa0162430:intron | 30.0% | |
| ATCATTCCCAAGAAATACAT+AGG | - | chr1_4:39354379-39354398 | None:intergenic | 30.0% | |
| TCTTGGGAATGATGTTAATA+TGG | + | chr1_4:39354386-39354405 | Msa0162430:intron | 30.0% | |
| CTTGGGAATGATGTTAATAT+GGG | + | chr1_4:39354387-39354406 | Msa0162430:intron | 30.0% | |
| !! | TTAATATGGGCACTTGTTTT+GGG | + | chr1_4:39354400-39354419 | Msa0162430:intron | 30.0% |
| GAAATGATGTATGTAAACTG+AGG | + | chr1_4:39354425-39354444 | Msa0162430:intron | 30.0% | |
| GAACTTAATCAAACACGTAT+AGG | + | chr1_4:39354700-39354719 | Msa0162430:three_prime_UTR | 30.0% | |
| !! | ATGCTTTGAAGGTAAAAGAA+AGG | - | chr1_4:39354751-39354770 | None:intergenic | 30.0% |
| ! | TTCTTTTACCTTCAAAGCAT+TGG | + | chr1_4:39354751-39354770 | Msa0162430:three_prime_UTR | 30.0% |
| TGATACTTTAATGCTGTTAG+TGG | + | chr1_4:39354864-39354883 | Msa0162430:three_prime_UTR | 30.0% | |
| GATACTTTAATGCTGTTAGT+GGG | + | chr1_4:39354865-39354884 | Msa0162430:three_prime_UTR | 30.0% | |
| ! | CGACATTTTGTATTAATCGA+TGG | + | chr1_4:39354954-39354973 | Msa0162430:three_prime_UTR | 30.0% |
| ! | GATGTCTTTTACATAGCATT+TGG | + | chr1_4:39355002-39355021 | Msa0162430:three_prime_UTR | 30.0% |
| !! | AGTGGAAAAGGTCTATTTTT+GGG | + | chr1_4:39355041-39355060 | Msa0162430:three_prime_UTR | 30.0% |
| ! | TTCTAGAAACTTGCTTCTGA+TGG | + | chr1_4:39350523-39350542 | Msa0162430:CDS | 35.0% |
| CATCTTTGACAAAAACAAGC+TGG | - | chr1_4:39350556-39350575 | None:intergenic | 35.0% | |
| !! | ACTTACATGTTTTGTTCCTC+CGG | + | chr1_4:39350806-39350825 | Msa0162430:CDS | 35.0% |
| ! | ATTAACAGCAAAGCTTTTGC+TGG | + | chr1_4:39350836-39350855 | Msa0162430:CDS | 35.0% |
| ! | TTAACAGCAAAGCTTTTGCT+GGG | + | chr1_4:39350837-39350856 | Msa0162430:CDS | 35.0% |
| TAACCCTCAATTGCATTTGA+TGG | - | chr1_4:39351055-39351074 | None:intergenic | 35.0% | |
| !! | GTGTTTCGAAAGTATCATTG+GGG | + | chr1_4:39351460-39351479 | Msa0162430:CDS | 35.0% |
| CATATTGGAGAAGCCAAAAA+GGG | + | chr1_4:39351524-39351543 | Msa0162430:CDS | 35.0% | |
| ! | ACTTTATTGCCAACCCTTTT+TGG | - | chr1_4:39351540-39351559 | None:intergenic | 35.0% |
| ! | AAAAAGGGTTGGCAATAAAG+TGG | + | chr1_4:39351539-39351558 | Msa0162430:CDS | 35.0% |
| AAGTACCTCAACAAAAGAGA+AGG | + | chr1_4:39351620-39351639 | Msa0162430:CDS | 35.0% | |
| !! | TTTCTGAAATGGTAATCGAG+TGG | - | chr1_4:39351713-39351732 | None:intergenic | 35.0% |
| CAGAACAGAATGATTCTGAA+AGG | + | chr1_4:39351745-39351764 | Msa0162430:CDS | 35.0% | |
| GAAATCGATACAACTCAAAG+AGG | + | chr1_4:39351767-39351786 | Msa0162430:CDS | 35.0% | |
| GGCAGAATTTAAATTGGAAG+TGG | - | chr1_4:39351826-39351845 | None:intergenic | 35.0% | |
| GATGAGAAAATCAACAGTTC+TGG | + | chr1_4:39351960-39351979 | Msa0162430:CDS | 35.0% | |
| CTTTGTGCAGTGAAAGAATT+TGG | + | chr1_4:39351993-39352012 | Msa0162430:CDS | 35.0% | |
| GGAAACATTAAAAAGGAGTC+TGG | + | chr1_4:39352014-39352033 | Msa0162430:CDS | 35.0% | |
| CATCAATTACCAGCATCATT+GGG | - | chr1_4:39352155-39352174 | None:intergenic | 35.0% | |
| ACATCAATTACCAGCATCAT+TGG | - | chr1_4:39352156-39352175 | None:intergenic | 35.0% | |
| AAATCAAATTCGGAAACTCC+AGG | - | chr1_4:39352371-39352390 | None:intergenic | 35.0% | |
| ACAGTCAAACTAAAACCTTC+TGG | - | chr1_4:39352428-39352447 | None:intergenic | 35.0% | |
| TGATGTTATCCACGAAAAGA+AGG | - | chr1_4:39352580-39352599 | None:intergenic | 35.0% | |
| GTGGATAACATCATCTTCTT+TGG | + | chr1_4:39352587-39352606 | Msa0162430:CDS | 35.0% | |
| CTTTGGCATATATATATGGG+AGG | + | chr1_4:39352604-39352623 | Msa0162430:CDS | 35.0% | |
| ! | TCTGTCAAGACAATTTTGCT+AGG | - | chr1_4:39352678-39352697 | None:intergenic | 35.0% |
| AGCAAAATTGTCTTGACAGA+TGG | + | chr1_4:39352678-39352697 | Msa0162430:CDS | 35.0% | |
| GCTTGCTCTAATATATCTAC+GGG | - | chr1_4:39352789-39352808 | None:intergenic | 35.0% | |
| CGCTTGCTCTAATATATCTA+CGG | - | chr1_4:39352790-39352809 | None:intergenic | 35.0% | |
| AGATATATTAGAGCAAGCGA+TGG | + | chr1_4:39352791-39352810 | Msa0162430:CDS | 35.0% | |
| !!! | CTCTTCATTTTTTTGGAGAG+GGG | - | chr1_4:39352947-39352966 | None:intergenic | 35.0% |
| !!! | GCTCTTCATTTTTTTGGAGA+GGG | - | chr1_4:39352948-39352967 | None:intergenic | 35.0% |
| !!! | TGAGTGGCTCTTCATTTTTT+TGG | - | chr1_4:39352954-39352973 | None:intergenic | 35.0% |
| AGCCACTCATACACAAAATA+AGG | + | chr1_4:39352965-39352984 | Msa0162430:intron | 35.0% | |
| CAACAAAGAGAATGTGCTAT+AGG | - | chr1_4:39353029-39353048 | None:intergenic | 35.0% | |
| CTATAGCACATTCTCTTTGT+TGG | + | chr1_4:39353027-39353046 | Msa0162430:intron | 35.0% | |
| TAGCATATGTGAAAAGGAAC+TGG | + | chr1_4:39353097-39353116 | Msa0162430:intron | 35.0% | |
| ! | TGAAAAGGAACTGGTTTAGA+TGG | + | chr1_4:39353106-39353125 | Msa0162430:intron | 35.0% |
| ! | TGACTAGTTATGCACAATGT+TGG | + | chr1_4:39353218-39353237 | Msa0162430:intron | 35.0% |
| ! | ATACTCTGGTTTATAGGACA+AGG | + | chr1_4:39353329-39353348 | Msa0162430:intron | 35.0% |
| !!! | GCCTTAAACCCATGATTTTT+TGG | - | chr1_4:39353384-39353403 | None:intergenic | 35.0% |
| GTCATGTATGAGATAAGAGT+AGG | - | chr1_4:39353631-39353650 | None:intergenic | 35.0% | |
| GATTGCTACCATAGTAATGT+GGG | - | chr1_4:39353719-39353738 | None:intergenic | 35.0% | |
| AGATTGCTACCATAGTAATG+TGG | - | chr1_4:39353720-39353739 | None:intergenic | 35.0% | |
| CTTAATGATAGAAGGTTGCA+TGG | + | chr1_4:39354035-39354054 | Msa0162430:intron | 35.0% | |
| TTTGTTAAGTTTGGAGGTGA+AGG | - | chr1_4:39354132-39354151 | None:intergenic | 35.0% | |
| !!! | GCGGATTTTTAGTTAAAGTG+AGG | + | chr1_4:39354257-39354276 | Msa0162430:intron | 35.0% |
| TTCCCAAGAAATACATAGGT+GGG | - | chr1_4:39354375-39354394 | None:intergenic | 35.0% | |
| ATTCCCAAGAAATACATAGG+TGG | - | chr1_4:39354376-39354395 | None:intergenic | 35.0% | |
| ! | GTTAATATGGGCACTTGTTT+TGG | + | chr1_4:39354399-39354418 | Msa0162430:intron | 35.0% |
| ! | AAGCTTTTGCCCATTTATGA+TGG | - | chr1_4:39354680-39354699 | None:intergenic | 35.0% |
| ATCCAATTATAAGTACACCG+TGG | + | chr1_4:39354807-39354826 | Msa0162430:three_prime_UTR | 35.0% | |
| TGTGAAAATGACAGTGGAAA+AGG | + | chr1_4:39355029-39355048 | Msa0162430:three_prime_UTR | 35.0% | |
| ! | CAGTGGAAAAGGTCTATTTT+TGG | + | chr1_4:39355040-39355059 | Msa0162430:three_prime_UTR | 35.0% |
| !!! | GTGGAAAAGGTCTATTTTTG+GGG | + | chr1_4:39355042-39355061 | Msa0162430:three_prime_UTR | 35.0% |
| TCTTTGGATACCATCAAGGA+GGG | - | chr1_4:39350600-39350619 | None:intergenic | 40.0% | |
| CTTCTCTTTGGATACCATCA+AGG | - | chr1_4:39350604-39350623 | None:intergenic | 40.0% | |
| ATACCCACACAAATTAGCGA+TGG | - | chr1_4:39350693-39350712 | None:intergenic | 40.0% | |
| ! | GATTTCATTGAAGGAGCACA+AGG | + | chr1_4:39350766-39350785 | Msa0162430:CDS | 40.0% |
| GAACATTGTTCAGTTTCTCC+AGG | - | chr1_4:39350895-39350914 | None:intergenic | 40.0% | |
| ! | TGGCAGTTTCTGTTTTATCC+TGG | - | chr1_4:39351000-39351019 | None:intergenic | 40.0% |
| TGGACCATCAAATGCAATTG+AGG | + | chr1_4:39351048-39351067 | Msa0162430:CDS | 40.0% | |
| GGACCATCAAATGCAATTGA+GGG | + | chr1_4:39351049-39351068 | Msa0162430:CDS | 40.0% | |
| !! | AGGACCTAAGTTCTGAGAAA+TGG | + | chr1_4:39351281-39351300 | Msa0162430:intron | 40.0% |
| AATTAAGCCGCCATCCATAT+TGG | + | chr1_4:39351509-39351528 | Msa0162430:CDS | 40.0% | |
| ! | TTTGGCTTCTCCAATATGGA+TGG | - | chr1_4:39351522-39351541 | None:intergenic | 40.0% |
| !!! | CCTTTTTGGCTTCTCCAATA+TGG | - | chr1_4:39351526-39351545 | None:intergenic | 40.0% |
| CCATATTGGAGAAGCCAAAA+AGG | + | chr1_4:39351523-39351542 | Msa0162430:CDS | 40.0% | |
| TTCAACAGAAGGATCATGAG+AGG | - | chr1_4:39351679-39351698 | None:intergenic | 40.0% | |
| CATTAAAAAGGAGTCTGGTG+TGG | + | chr1_4:39352019-39352038 | Msa0162430:CDS | 40.0% | |
| CAATGCATCTTGTGCAGTAT+CGG | + | chr1_4:39352235-39352254 | Msa0162430:intron | 40.0% | |
| GTACTTTCCTCAACAGCATT+GGG | - | chr1_4:39352290-39352309 | None:intergenic | 40.0% | |
| AGTACTTTCCTCAACAGCAT+TGG | - | chr1_4:39352291-39352310 | None:intergenic | 40.0% | |
| GTCAAACTAAAACCTTCTGG+TGG | - | chr1_4:39352425-39352444 | None:intergenic | 40.0% | |
| GTGACAACTGGAAGAAAGTT+CGG | - | chr1_4:39352536-39352555 | None:intergenic | 40.0% | |
| TAGTAGCAAAAGGTGACAAC+TGG | - | chr1_4:39352548-39352567 | None:intergenic | 40.0% | |
| ! | TGTCACCTTTTGCTACTATG+TGG | + | chr1_4:39352550-39352569 | Msa0162430:CDS | 40.0% |
| GCATTCCACATAGTAGCAAA+AGG | - | chr1_4:39352558-39352577 | None:intergenic | 40.0% | |
| GAGGGGTCACAAACATAATA+GGG | - | chr1_4:39352930-39352949 | None:intergenic | 40.0% | |
| AGAGGGGTCACAAACATAAT+AGG | - | chr1_4:39352931-39352950 | None:intergenic | 40.0% | |
| !!! | GGCTCTTCATTTTTTTGGAG+AGG | - | chr1_4:39352949-39352968 | None:intergenic | 40.0% |
| AATGGTTGCCAATGTGGTAT+GGG | - | chr1_4:39353297-39353316 | None:intergenic | 40.0% | |
| AAATGGTTGCCAATGTGGTA+TGG | - | chr1_4:39353298-39353317 | None:intergenic | 40.0% | |
| CAAAGAAATGGTTGCCAATG+TGG | - | chr1_4:39353303-39353322 | None:intergenic | 40.0% | |
| !! | TTTCTTTTAGGTACGCTTGC+TGG | + | chr1_4:39353507-39353526 | Msa0162430:intron | 40.0% |
| CACTGTTTCATTCTGAATGC+TGG | - | chr1_4:39353559-39353578 | None:intergenic | 40.0% | |
| CAGCATTCAGAATGAAACAG+TGG | + | chr1_4:39353557-39353576 | Msa0162430:CDS | 40.0% | |
| !! | TTATCTCATACATGACGGAC+AGG | + | chr1_4:39353635-39353654 | Msa0162430:CDS | 40.0% |
| ATGGTGCAGCTAAGTTATGT+GGG | - | chr1_4:39354162-39354181 | None:intergenic | 40.0% | |
| AAATACATAGGTGGGGAAAG+TGG | - | chr1_4:39354367-39354386 | None:intergenic | 40.0% | |
| TTCCCCACCTATGTATTTCT+TGG | + | chr1_4:39354369-39354388 | Msa0162430:intron | 40.0% | |
| TCCCCACCTATGTATTTCTT+GGG | + | chr1_4:39354370-39354389 | Msa0162430:intron | 40.0% | |
| TCCCAAGAAATACATAGGTG+GGG | - | chr1_4:39354374-39354393 | None:intergenic | 40.0% | |
| GTTAACCATTGTTCTGGTGT+TGG | + | chr1_4:39354523-39354542 | Msa0162430:intron | 40.0% | |
| ! | GTTCTGAGTGGTTCACAAAT+AGG | + | chr1_4:39354559-39354578 | Msa0162430:CDS | 40.0% |
| !! | GGAAGAGTATGACGTTTTGA+AGG | + | chr1_4:39354585-39354604 | Msa0162430:CDS | 40.0% |
| AAGGATTTCGTTGTACCACT+TGG | + | chr1_4:39354604-39354623 | Msa0162430:CDS | 40.0% | |
| ! | CCACTTTGAGAAGAGAAATG+AGG | - | chr1_4:39354637-39354656 | None:intergenic | 40.0% |
| CCTCATTTCTCTTCTCAAAG+TGG | + | chr1_4:39354634-39354653 | Msa0162430:CDS | 40.0% | |
| TCAACACTCCAATGCTTTGA+AGG | - | chr1_4:39354762-39354781 | None:intergenic | 40.0% | |
| GGCATATGTGAAAATGACAG+TGG | + | chr1_4:39355023-39355042 | Msa0162430:three_prime_UTR | 40.0% | |
| CTCTTTGGATACCATCAAGG+AGG | - | chr1_4:39350601-39350620 | None:intergenic | 45.0% | |
| !! | CAAACAGCTGGTCTTCTCTT+TGG | - | chr1_4:39350616-39350635 | None:intergenic | 45.0% |
| ! | AGGTCCATCGCTAATTTGTG+TGG | + | chr1_4:39350686-39350705 | Msa0162430:CDS | 45.0% |
| ! | GGTCCATCGCTAATTTGTGT+GGG | + | chr1_4:39350687-39350706 | Msa0162430:CDS | 45.0% |
| !! | GATCAGTTGGCAAAGCATTG+CGG | - | chr1_4:39350724-39350743 | None:intergenic | 45.0% |
| GCTGTTAATTACACAACCGG+AGG | - | chr1_4:39350825-39350844 | None:intergenic | 45.0% | |
| !! | GAGGTGCAATGTTTTAGACC+TGG | + | chr1_4:39350874-39350893 | Msa0162430:CDS | 45.0% |
| !! | AGAGGTGTCTTTGGAACAGT+GGG | + | chr1_4:39351024-39351043 | Msa0162430:CDS | 45.0% |
| TTGGGGCAAACAGATACAAC+TGG | + | chr1_4:39351477-39351496 | Msa0162430:CDS | 45.0% | |
| TTGGAGAAGCCAAAAAGGGT+TGG | + | chr1_4:39351528-39351547 | Msa0162430:CDS | 45.0% | |
| AACTCAGTCGCTCTGTTACT+TGG | + | chr1_4:39351934-39351953 | Msa0162430:CDS | 45.0% | |
| ! | ACTCAGTCGCTCTGTTACTT+GGG | + | chr1_4:39351935-39351954 | Msa0162430:CDS | 45.0% |
| AAGCAACTGCTTCTGATGCT+TGG | - | chr1_4:39352118-39352137 | None:intergenic | 45.0% | |
| CGATACTGCACAAGATGCAT+TGG | - | chr1_4:39352237-39352256 | None:intergenic | 45.0% | |
| !! | TGCTGTTGAGGAAAGTACTG+TGG | + | chr1_4:39352292-39352311 | Msa0162430:CDS | 45.0% |
| CTGAAATGGCCAAAGAAACC+TGG | + | chr1_4:39352350-39352369 | Msa0162430:CDS | 45.0% | |
| TCGGAAACTCCAGGTTTCTT+TGG | - | chr1_4:39352362-39352381 | None:intergenic | 45.0% | |
| ! | TGTTTGACTCTGAAGACACG+TGG | + | chr1_4:39352390-39352409 | Msa0162430:CDS | 45.0% |
| ! | TGTGGAATGCCTTCTTTTCG+TGG | + | chr1_4:39352568-39352587 | Msa0162430:CDS | 45.0% |
| ! | CTGGAATTTGCTTCCTGCAA+AGG | + | chr1_4:39353247-39353266 | Msa0162430:intron | 45.0% |
| CTTCCTGCAAAGGCAAGATA+AGG | + | chr1_4:39353257-39353276 | Msa0162430:intron | 45.0% | |
| CAACCTTATCTTGCCTTTGC+AGG | - | chr1_4:39353263-39353282 | None:intergenic | 45.0% | |
| CTGCAAAGGCAAGATAAGGT+TGG | + | chr1_4:39353261-39353280 | Msa0162430:intron | 45.0% | |
| GCTATTGACCCATACCACAT+TGG | + | chr1_4:39353286-39353305 | Msa0162430:intron | 45.0% | |
| TAAGGCTGTCTGTTGCAGTT+AGG | + | chr1_4:39353398-39353417 | Msa0162430:intron | 45.0% | |
| ! | GCTGGATACAATGTCGTTTG+TGG | + | chr1_4:39353525-39353544 | Msa0162430:CDS | 45.0% |
| CAGAATGAAACAGTGGCAAG+TGG | + | chr1_4:39353564-39353583 | Msa0162430:CDS | 45.0% | |
| ATGGGGCAGCTAAGTTATGT+GGG | - | chr1_4:39354010-39354029 | None:intergenic | 45.0% | |
| CATGGTGCAGCTAAGTTATG+TGG | - | chr1_4:39354163-39354182 | None:intergenic | 45.0% | |
| !!! | ATATGGGCACTTGTTTTGGG+TGG | + | chr1_4:39354403-39354422 | Msa0162430:intron | 45.0% |
| CCAAACCAACACCAGAACAA+TGG | - | chr1_4:39354531-39354550 | None:intergenic | 45.0% | |
| !! | CCATTGTTCTGGTGTTGGTT+TGG | + | chr1_4:39354528-39354547 | Msa0162430:intron | 45.0% |
| GAGTGGTTCACAAATAGGCA+AGG | + | chr1_4:39354564-39354583 | Msa0162430:CDS | 45.0% | |
| GGCCACGGTGTACTTATAAT+TGG | - | chr1_4:39354812-39354831 | None:intergenic | 45.0% | |
| ATTGGATTCCTCTGTCGCTA+GGG | - | chr1_4:39354834-39354853 | None:intergenic | 45.0% | |
| AATTGGATTCCTCTGTCGCT+AGG | - | chr1_4:39354835-39354854 | None:intergenic | 45.0% | |
| TTGCAATTGGCCCTCCTTGA+TGG | + | chr1_4:39350587-39350606 | Msa0162430:CDS | 50.0% | |
| CTTTGCCAACTGATCGTCCT+CGG | + | chr1_4:39350729-39350748 | Msa0162430:CDS | 50.0% | |
| GTCCTCGGAAGGGTAGATAT+CGG | + | chr1_4:39350744-39350763 | Msa0162430:CDS | 50.0% | |
| ATCCGATATCTACCCTTCCG+AGG | - | chr1_4:39350749-39350768 | None:intergenic | 50.0% | |
| CATTGCACCTCTCATCTTGC+AGG | - | chr1_4:39350865-39350884 | None:intergenic | 50.0% | |
| AACAGAAACTGCCACTGCAG+AGG | + | chr1_4:39351006-39351025 | Msa0162430:CDS | 50.0% | |
| TTCCAAAGACACCTCTGCAG+TGG | - | chr1_4:39351020-39351039 | None:intergenic | 50.0% | |
| !! | CAGAGGTGTCTTTGGAACAG+TGG | + | chr1_4:39351023-39351042 | Msa0162430:CDS | 50.0% |
| CACAATCGGCAGTGGGAAAA+TGG | - | chr1_4:39351336-39351355 | None:intergenic | 50.0% | |
| !! | CGACTTGCCACGATTAGCTT+TGG | - | chr1_4:39351370-39351389 | None:intergenic | 50.0% |
| GGCTTCTCCAATATGGATGG+CGG | - | chr1_4:39351519-39351538 | None:intergenic | 50.0% | |
| ! | GGGTTGGCAATAAAGTGGTC+AGG | + | chr1_4:39351544-39351563 | Msa0162430:CDS | 50.0% |
| TGCTTCTGATGCTTGGCTCA+AGG | - | chr1_4:39352111-39352130 | None:intergenic | 50.0% | |
| GCATCAGAAGCAGTTGCTTC+TGG | + | chr1_4:39352119-39352138 | Msa0162430:CDS | 50.0% | |
| ! | AGCAGTTGCTTCTGGAGACT+CGG | + | chr1_4:39352127-39352146 | Msa0162430:CDS | 50.0% |
| ! | TCTTGTGCAGTATCGGAAGC+AGG | + | chr1_4:39352242-39352261 | Msa0162430:intron | 50.0% |
| ! | TCAACAGCATTGGGAGGATG+TGG | - | chr1_4:39352281-39352300 | None:intergenic | 50.0% |
| ACATCCTCCCAATGCTGTTG+AGG | + | chr1_4:39352280-39352299 | Msa0162430:CDS | 50.0% | |
| ! | CTTTCCTCAACAGCATTGGG+AGG | - | chr1_4:39352287-39352306 | None:intergenic | 50.0% |
| TGGTTTGATGCTCCACCAGA+AGG | + | chr1_4:39352410-39352429 | Msa0162430:CDS | 50.0% | |
| CTGAGCTCTTCAACAACAGC+AGG | - | chr1_4:39352756-39352775 | None:intergenic | 50.0% | |
| CTGCTGTTGTTGAAGAGCTC+AGG | + | chr1_4:39352754-39352773 | Msa0162430:CDS | 50.0% | |
| TGCACAATGTTGGCGAGTTC+TGG | + | chr1_4:39353228-39353247 | Msa0162430:intron | 50.0% | |
| !! | TCTCATACATGACGGACAGG+AGG | + | chr1_4:39353638-39353657 | Msa0162430:CDS | 50.0% |
| !! | CTCATACATGACGGACAGGA+GGG | + | chr1_4:39353639-39353658 | Msa0162430:CDS | 50.0% |
| ! | CAGGAGGGACTTGTTTCTCA+AGG | + | chr1_4:39353654-39353673 | Msa0162430:CDS | 50.0% |
| TGGGGCAGCTAAGTTATGTG+GGG | - | chr1_4:39354009-39354028 | None:intergenic | 50.0% | |
| CATGGGGCAGCTAAGTTATG+TGG | - | chr1_4:39354011-39354030 | None:intergenic | 50.0% | |
| AGGGATCAAGCGTGTTTGTC+AGG | - | chr1_4:39354065-39354084 | None:intergenic | 50.0% | |
| !! | TGGTGTTGGTTTGGTGAAGC+AGG | + | chr1_4:39354537-39354556 | Msa0162430:intron | 50.0% |
| !! | TTGGTGAAGCAGGTTCTGAG+TGG | + | chr1_4:39354547-39354566 | Msa0162430:intron | 50.0% |
| ! | AAATGAGGTGCTCGACCAAG+TGG | - | chr1_4:39354622-39354641 | None:intergenic | 50.0% |
| TTGGATTCCTCTGTCGCTAG+GGG | - | chr1_4:39354833-39354852 | None:intergenic | 50.0% | |
| GAAGACCAGCTGTTTGCAGC+TGG | + | chr1_4:39350620-39350639 | Msa0162430:CDS | 55.0% | |
| CAGATCCAGCTGCAAACAGC+TGG | - | chr1_4:39350628-39350647 | None:intergenic | 55.0% | |
| !! | GGCAAAGCATTGCGGCACAA+TGG | - | chr1_4:39350716-39350735 | None:intergenic | 55.0% |
| CCAACTGATCGTCCTCGGAA+GGG | + | chr1_4:39350734-39350753 | Msa0162430:CDS | 55.0% | |
| !! | TGCCACTGCAGAGGTGTCTT+TGG | + | chr1_4:39351015-39351034 | Msa0162430:CDS | 55.0% |
| !! | GTGTCTTTGGAACAGTGGGC+TGG | + | chr1_4:39351028-39351047 | Msa0162430:CDS | 55.0% |
| TGCAACGCACAATCGGCAGT+GGG | - | chr1_4:39351343-39351362 | None:intergenic | 55.0% | |
| ! | ACTGCCGATTGTGCGTTGCA+GGG | + | chr1_4:39351343-39351362 | Msa0162430:intron | 55.0% |
| TGGACCCTGCAACGCACAAT+CGG | - | chr1_4:39351350-39351369 | None:intergenic | 55.0% | |
| GCAGGGTCCAAAGCTAATCG+TGG | + | chr1_4:39351360-39351379 | Msa0162430:intron | 55.0% | |
| GACTCGGATCCCAATGATGC+TGG | + | chr1_4:39352143-39352162 | Msa0162430:CDS | 55.0% | |
| GCCAACTGATCGTCCTCGGA+AGG | + | chr1_4:39350733-39350752 | Msa0162430:CDS | 60.0% | |
| CCCTTCCGAGGACGATCAGT+TGG | - | chr1_4:39350737-39350756 | None:intergenic | 60.0% | |
| CTGGGAGCCTGCAAGATGAG+AGG | + | chr1_4:39350855-39350874 | Msa0162430:CDS | 60.0% | |
| CTGCAACGCACAATCGGCAG+TGG | - | chr1_4:39351344-39351363 | None:intergenic | 60.0% | |
| ! | CACTGCCGATTGTGCGTTGC+AGG | + | chr1_4:39351342-39351361 | Msa0162430:intron | 60.0% |
| TCCTCTGTCGCTAGGGGCCA+CGG | - | chr1_4:39354827-39354846 | None:intergenic | 65.0% | |
| ACCGTGGCCCCTAGCGACAG+AGG | + | chr1_4:39354823-39354842 | Msa0162430:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39350482 | 39355103 | 39350482 | ID=Msa0162430;Name=Msa0162430 |
| chr1_4 | mRNA | 39350482 | 39355103 | 39350482 | ID=Msa0162430-mRNA-1;Parent=Msa0162430;Name=Msa0162430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.83|1|1|1|6|440|723 |
| chr1_4 | exon | 39350482 | 39351130 | 39350482 | ID=Msa0162430-mRNA-1:exon:11422;Parent=Msa0162430-mRNA-1 |
| chr1_4 | exon | 39351364 | 39352164 | 39351364 | ID=Msa0162430-mRNA-1:exon:11423;Parent=Msa0162430-mRNA-1 |
| chr1_4 | exon | 39352252 | 39352445 | 39352252 | ID=Msa0162430-mRNA-1:exon:11424;Parent=Msa0162430-mRNA-1 |
| chr1_4 | exon | 39352549 | 39352812 | 39352549 | ID=Msa0162430-mRNA-1:exon:11425;Parent=Msa0162430-mRNA-1 |
| chr1_4 | exon | 39353517 | 39353675 | 39353517 | ID=Msa0162430-mRNA-1:exon:11426;Parent=Msa0162430-mRNA-1 |
| chr1_4 | exon | 39354559 | 39355103 | 39354559 | ID=Msa0162430-mRNA-1:exon:11427;Parent=Msa0162430-mRNA-1 |
| chr1_4 | CDS | 39350482 | 39351130 | 39350482 | ID=Msa0162430-mRNA-1:cds;Parent=Msa0162430-mRNA-1 |
| chr1_4 | CDS | 39351364 | 39352164 | 39351364 | ID=Msa0162430-mRNA-1:cds;Parent=Msa0162430-mRNA-1 |
| chr1_4 | CDS | 39352252 | 39352445 | 39352252 | ID=Msa0162430-mRNA-1:cds;Parent=Msa0162430-mRNA-1 |
| chr1_4 | CDS | 39352549 | 39352812 | 39352549 | ID=Msa0162430-mRNA-1:cds;Parent=Msa0162430-mRNA-1 |
| chr1_4 | CDS | 39353517 | 39353675 | 39353517 | ID=Msa0162430-mRNA-1:cds;Parent=Msa0162430-mRNA-1 |
| chr1_4 | CDS | 39354559 | 39354663 | 39354559 | ID=Msa0162430-mRNA-1:cds;Parent=Msa0162430-mRNA-1 |
| chr1_4 | three_prime_UTR | 39354664 | 39355103 | 39354664 | ID=Msa0162430-mRNA-1:three_prime_utr;Parent=Msa0162430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
