AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0218460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218460 MtrunA17_Chr2g0320621 92.456 517 13 2 1 517 1 491 0.0 925
Msa0218460 MtrunA17_Chr4g0027681 69.808 520 123 5 6 517 1 494 0.0 726
Msa0218460 MtrunA17_Chr7g0265331 58.090 513 187 4 4 514 5 491 0.0 598
Msa0218460 MtrunA17_Chr1g0179751 57.764 483 171 6 5 483 34 487 0.0 555
Msa0218460 MtrunA17_Chr1g0189381 38.171 503 260 10 18 514 19 476 7.27e-106 325
Msa0218460 MtrunA17_Chr7g0249451 37.924 472 245 11 8 470 5 437 3.51e-99 307
Msa0218460 MtrunA17_Chr7g0221681 35.714 490 265 10 19 498 18 467 1.14e-94 296
Msa0218460 MtrunA17_Chr4g0019931 72.131 122 34 0 83 204 1 122 2.23e-51 171
Msa0218460 MtrunA17_Chr5g0401601 31.221 426 231 14 53 464 62 439 1.49e-50 183
Msa0218460 MtrunA17_Chr4g0053721 30.673 401 217 12 77 464 79 431 3.00e-47 174
Msa0218460 MtrunA17_Chr1g0159791 28.993 407 238 13 65 463 46 409 1.87e-42 156
Msa0218460 MtrunA17_Chr5g0430861 88.750 80 6 1 204 280 27 106 8.49e-39 137
Msa0218460 MtrunA17_Chr6g0484731 26.969 419 258 14 65 473 180 560 1.48e-37 145
Msa0218460 MtrunA17_Chr3g0130931 29.925 401 214 18 77 464 103 449 7.95e-37 141
Msa0218460 MtrunA17_Chr4g0010951 28.671 429 223 19 77 464 60 446 8.69e-37 141
Msa0218460 MtrunA17_Chr3g0130741 27.962 422 244 20 53 464 64 435 4.83e-33 130
Msa0218460 MtrunA17_Chr8g0384731 26.521 411 244 17 65 464 62 425 1.56e-32 129
Msa0218460 MtrunA17_Chr8g0371371 27.083 432 259 16 46 467 78 463 1.80e-32 130
Msa0218460 MtrunA17_Chr8g0371351 27.381 504 288 20 42 517 63 516 2.85e-32 129
Msa0218460 MtrunA17_Chr5g0442921 27.654 405 236 14 77 464 190 554 4.54e-32 129
Msa0218460 MtrunA17_Chr2g0310801 30.905 398 213 21 77 464 89 434 4.94e-32 127
Msa0218460 MtrunA17_Chr2g0310821 29.353 402 209 20 77 466 107 445 4.48e-31 125
Msa0218460 MtrunA17_Chr3g0095891 28.395 405 236 15 74 463 93 458 2.13e-30 123
Msa0218460 MtrunA17_Chr5g0406001 27.155 464 265 20 43 482 72 486 2.77e-30 124
Msa0218460 MtrunA17_Chr5g0435871 30.000 400 216 17 77 464 88 435 1.11e-28 118
Msa0218460 MtrunA17_Chr2g0307991 27.930 401 219 16 79 464 60 405 5.87e-28 115
Msa0218460 MtrunA17_Chr2g0308001 27.681 401 225 14 79 464 59 409 7.93e-28 115
Msa0218460 MtrunA17_Chr5g0435971 29.750 400 217 17 77 464 85 432 3.99e-27 113
Msa0218460 MtrunA17_Chr8g0352671 28.536 403 222 19 76 464 87 437 4.07e-27 114
Msa0218460 MtrunA17_Chr2g0310831 28.010 407 216 18 77 464 93 441 6.50e-27 113
Msa0218460 MtrunA17_Chr8g0386441 29.426 401 215 19 77 464 85 430 7.65e-27 112
Msa0218460 MtrunA17_Chr8g0352661 28.642 405 220 18 77 464 85 437 2.23e-26 111
Msa0218460 MtrunA17_Chr7g0267171 27.896 423 223 20 77 463 89 465 5.01e-26 110
Msa0218460 MtrunA17_Chr5g0419291 29.040 427 237 19 46 463 59 428 3.20e-25 108
Msa0218460 MtrunA17_Chr3g0087851 27.407 405 236 17 70 464 81 437 3.96e-25 107
Msa0218460 MtrunA17_Chr1g0165201 26.133 375 211 17 77 440 127 446 9.17e-25 107
Msa0218460 MtrunA17_Chr2g0291201 26.237 465 265 20 26 463 38 451 9.82e-25 107
Msa0218460 MtrunA17_Chr1g0212321 27.889 398 220 17 77 463 145 486 1.47e-24 106
Msa0218460 MtrunA17_Chr5g0395911 24.832 447 259 18 36 464 27 414 1.93e-24 105
Msa0218460 MtrunA17_Chr5g0415951 31.559 263 157 8 73 328 83 329 2.48e-24 105
Msa0218460 MtrunA17_Chr6g0484901 26.478 389 228 12 79 463 157 491 4.53e-24 105
Msa0218460 MtrunA17_Chr7g0275731 26.933 401 223 16 77 463 140 484 8.83e-24 104
Msa0218460 MtrunA17_Chr1g0210201 25.189 397 228 13 77 463 130 467 1.44e-23 103
Msa0218460 MtrunA17_Chr3g0124421 27.273 396 234 16 78 463 99 450 2.19e-23 103
Msa0218460 MtrunA17_Chr2g0309561 24.215 446 250 13 64 463 105 508 4.82e-23 102
Msa0218460 MtrunA17_Chr4g0023351 30.894 246 144 9 79 314 59 288 1.80e-22 97.8
Msa0218460 MtrunA17_Chr5g0395931 26.712 438 237 23 48 464 62 436 2.74e-22 99.4
Msa0218460 MtrunA17_Chr3g0099891 25.945 397 228 12 77 464 116 455 7.27e-22 98.2
Msa0218460 MtrunA17_Chr2g0333991 28.223 287 168 11 75 339 85 355 1.10e-21 97.8
Msa0218460 MtrunA17_Chr5g0395871 26.368 402 226 17 77 464 80 425 1.13e-21 97.4
Msa0218460 MtrunA17_Chr3g0078321 24.638 414 231 19 76 464 56 413 1.86e-21 96.7
Msa0218460 MtrunA17_Chr6g0486981 27.340 406 218 20 79 464 89 437 6.17e-21 95.5
Msa0218460 MtrunA17_Chr2g0311451 24.675 462 258 20 23 464 45 436 1.65e-20 94.0
Msa0218460 MtrunA17_Chr6g0457401 28.117 409 226 18 68 464 85 437 3.29e-20 93.2
Msa0218460 MtrunA17_Chr8g0353261 26.316 399 228 16 75 464 93 434 4.29e-20 92.8
Msa0218460 MtrunA17_Chr5g0425141 24.257 404 255 15 76 472 99 458 4.56e-20 93.2
Msa0218460 MtrunA17_Chr4g0001991 29.471 397 214 17 83 465 175 519 6.69e-20 92.8
Msa0218460 MtrunA17_Chr8g0390761 25.581 387 216 15 79 452 117 444 1.18e-19 91.7
Msa0218460 MtrunA17_Chr1g0164401 24.714 437 251 21 42 464 57 429 2.16e-19 90.5
Msa0218460 MtrunA17_Chr3g0110191 25.659 417 215 21 83 468 91 443 2.31e-19 90.5
Msa0218460 MtrunA17_Chr6g0487471 26.173 405 228 17 77 464 85 435 2.66e-19 90.5
Msa0218460 MtrunA17_Chr3g0099901 25.700 393 238 11 77 463 141 485 4.79e-19 90.1
Msa0218460 MtrunA17_Chr2g0312941 23.182 440 267 18 50 458 49 448 2.41e-18 87.8
Msa0218460 MtrunA17_Chr7g0239001 26.716 408 230 17 83 465 64 427 8.52e-18 85.9
Msa0218460 MtrunA17_Chr2g0307461 23.898 431 257 15 49 454 37 421 1.04e-17 85.5
Msa0218460 MtrunA17_Chr4g0056211 27.273 429 215 23 89 464 87 471 6.76e-17 83.2
Msa0218460 MtrunA17_Chr4g0061641 32.319 263 142 13 79 328 56 295 4.62e-16 80.1
Msa0218460 MtrunA17_Chr5g0434441 25.891 421 231 18 83 476 73 439 1.35e-14 75.9
Msa0218460 MtrunA17_Chr5g0399171 27.376 442 221 25 79 465 75 471 4.18e-14 74.7
Msa0218460 MtrunA17_Chr5g0434411 23.472 409 230 20 83 464 86 438 4.36e-14 74.3
Msa0218460 MtrunA17_Chr3g0133071 31.321 265 147 12 74 329 93 331 1.38e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218460 AT5G22850.1 69.057 488 122 3 1 485 1 462 0.0 675
Msa0218460 AT1G08210.3 58.980 490 173 4 2 491 55 516 0.0 550
Msa0218460 AT1G08210.4 58.980 490 173 4 2 491 41 502 0.0 550
Msa0218460 AT2G36670.2 55.403 509 190 6 11 514 27 503 0.0 550
Msa0218460 AT1G08210.1 58.980 490 173 4 2 491 7 468 0.0 548
Msa0218460 AT2G36670.1 54.864 514 190 7 11 514 27 508 0.0 544
Msa0218460 AT1G08210.2 55.899 517 173 5 2 491 7 495 0.0 534
Msa0218460 AT2G36670.4 56.979 437 156 5 78 514 33 437 1.12e-170 489
Msa0218460 AT2G36670.3 56.979 437 156 5 78 514 33 437 1.12e-170 489
Msa0218460 AT3G02740.1 36.327 501 265 11 5 492 8 467 2.52e-100 311
Msa0218460 AT1G05840.1 36.975 476 255 9 7 476 14 450 1.42e-99 309
Msa0218460 AT5G36260.1 37.868 441 230 8 39 474 43 444 2.17e-97 303
Msa0218460 AT3G02740.2 39.348 399 202 8 71 464 2 365 2.22e-92 288
Msa0218460 AT1G65240.1 37.868 441 225 12 40 474 40 437 1.29e-88 280
Msa0218460 AT3G42550.1 36.093 471 203 12 10 467 8 393 1.74e-82 263
Msa0218460 AT5G43100.2 29.705 441 259 15 77 511 74 469 2.30e-53 187
Msa0218460 AT5G43100.1 31.472 394 215 14 77 464 74 418 8.75e-52 186
Msa0218460 AT3G50050.1 30.404 421 238 13 51 464 65 437 3.29e-44 166
Msa0218460 AT1G44130.1 27.619 420 249 16 54 464 27 400 7.23e-41 152
Msa0218460 AT3G25700.1 29.383 405 235 13 77 465 82 451 1.83e-39 149
Msa0218460 AT3G51350.1 28.281 442 244 15 43 463 63 452 1.21e-37 145
Msa0218460 AT2G17760.1 28.111 434 249 18 43 463 66 449 5.83e-36 140
Msa0218460 AT1G77480.1 27.293 447 273 14 63 500 53 456 3.53e-34 134
Msa0218460 AT4G33490.2 27.189 434 251 20 53 472 38 420 5.05e-34 133
Msa0218460 AT1G49050.1 26.411 443 265 18 40 463 168 568 5.52e-34 135
Msa0218460 AT3G51330.3 29.139 453 266 16 25 464 44 454 1.70e-33 132
Msa0218460 AT1G49050.2 26.316 399 249 16 78 463 29 395 2.27e-33 131
Msa0218460 AT3G51330.1 29.204 452 265 16 25 463 44 453 3.27e-33 133
Msa0218460 AT3G51340.2 27.778 450 267 14 25 463 45 447 5.72e-33 132
Msa0218460 AT1G77480.2 27.073 410 247 14 63 463 53 419 2.14e-32 129
Msa0218460 AT1G64830.1 28.967 397 222 12 77 464 84 429 2.78e-32 129
Msa0218460 AT5G10080.1 26.933 401 232 11 78 463 99 453 7.38e-32 129
Msa0218460 AT3G59080.1 27.160 405 239 13 77 464 168 533 1.75e-31 128
Msa0218460 AT4G35880.1 28.354 395 225 17 78 463 106 451 2.01e-31 127
Msa0218460 AT2G03200.1 27.206 408 222 17 77 463 105 458 5.35e-31 125
Msa0218460 AT3G51330.2 29.091 440 257 16 25 451 44 441 8.19e-30 122
Msa0218460 AT2G42980.1 33.091 275 155 10 77 334 158 420 1.05e-28 119
Msa0218460 AT3G51360.1 27.071 495 293 22 36 511 41 486 1.39e-28 119
Msa0218460 AT3G51360.9 27.071 495 293 22 36 511 51 496 1.77e-28 119
Msa0218460 AT4G35880.2 33.333 258 145 11 78 328 106 343 2.26e-28 117
Msa0218460 AT3G51360.7 26.889 450 268 18 75 511 1 402 2.43e-28 117
Msa0218460 AT1G09750.1 28.747 407 216 16 74 463 99 448 1.25e-27 115
Msa0218460 AT3G51340.3 30.841 321 194 9 25 334 45 348 1.43e-27 115
Msa0218460 AT5G10770.1 28.212 397 224 15 77 464 130 474 1.69e-27 115
Msa0218460 AT1G25510.1 27.990 393 222 16 77 463 146 483 1.77e-27 115
Msa0218460 AT2G35615.1 27.328 494 279 20 1 464 1 444 2.06e-27 115
Msa0218460 AT3G51340.4 30.841 321 194 9 25 334 45 348 2.54e-27 114
Msa0218460 AT3G51340.1 30.841 321 194 9 25 334 45 348 1.07e-26 114
Msa0218460 AT3G61820.1 27.861 402 224 18 77 463 133 483 2.76e-26 112
Msa0218460 AT4G33490.1 27.568 370 210 18 53 411 35 357 4.02e-26 110
Msa0218460 AT4G30030.1 27.226 393 231 15 79 465 78 421 6.91e-26 110
Msa0218460 AT2G23945.1 26.434 401 239 12 75 463 92 448 9.71e-26 110
Msa0218460 AT5G02190.1 28.180 401 229 18 88 466 82 445 1.09e-25 110
Msa0218460 AT4G30040.1 28.571 336 190 13 79 404 85 380 1.16e-25 109
Msa0218460 AT1G01300.1 28.536 403 216 16 77 464 140 485 1.61e-25 110
Msa0218460 AT3G12700.1 24.433 397 248 14 79 464 106 461 2.05e-25 109
Msa0218460 AT1G49050.3 27.215 316 192 13 40 342 168 458 9.19e-25 107
Msa0218460 AT5G33340.1 28.822 399 222 18 77 464 88 435 1.50e-24 106
Msa0218460 AT3G18490.1 26.396 394 230 13 77 463 160 500 6.27e-24 105
Msa0218460 AT3G51360.10 28.469 418 236 20 36 438 41 410 7.76e-24 104
Msa0218460 AT3G51360.6 28.469 418 236 20 36 438 51 420 7.98e-24 104
Msa0218460 AT3G54400.1 26.316 399 228 16 75 464 84 425 5.63e-23 101
Msa0218460 AT3G51360.2 30.392 306 177 14 36 328 51 333 1.94e-22 99.0
Msa0218460 AT2G28030.1 25.424 413 214 15 74 468 56 392 2.41e-22 99.4
Msa0218460 AT1G31450.1 27.427 412 223 19 77 464 83 442 3.39e-22 99.8
Msa0218460 AT3G51360.5 28.684 380 211 18 36 401 51 384 7.03e-22 98.6
Msa0218460 AT3G51360.4 28.684 380 211 18 36 401 41 374 8.83e-22 97.8
Msa0218460 AT5G45120.1 27.211 441 224 21 79 465 83 480 3.05e-21 97.1
Msa0218460 AT3G20015.1 26.582 395 229 16 77 463 129 470 3.15e-21 97.1
Msa0218460 AT2G28220.1 24.318 440 261 17 36 468 28 402 8.38e-21 95.1
Msa0218460 AT2G28010.1 23.691 401 236 13 74 468 60 396 4.93e-20 92.8
Msa0218460 AT2G28040.1 25.123 406 226 15 71 468 60 395 5.67e-20 92.4
Msa0218460 AT2G28040.2 25.123 406 226 15 71 468 51 386 6.31e-20 92.0
Msa0218460 AT2G39710.1 27.251 411 225 21 83 465 69 433 1.17e-19 92.0
Msa0218460 AT1G66180.1 24.163 418 221 17 83 467 76 430 6.94e-19 89.4
Msa0218460 AT2G28225.1 24.444 405 224 18 74 464 62 398 8.26e-19 89.0
Msa0218460 AT3G59080.2 23.762 404 218 12 77 464 168 497 1.20e-18 89.4
Msa0218460 AT3G52500.1 26.207 435 220 19 77 464 88 468 3.11e-18 87.8
Msa0218460 AT5G07030.1 30.000 270 152 12 74 333 110 352 4.31e-18 87.4
Msa0218460 AT5G10760.1 24.664 446 252 19 38 463 83 464 2.85e-16 81.6
Msa0218460 AT3G25700.2 35.507 138 79 3 77 211 82 212 1.18e-15 79.0
Msa0218460 AT5G37540.1 21.675 406 246 14 83 465 84 440 1.55e-15 79.3
Msa0218460 AT1G79720.1 24.631 406 231 16 79 465 135 484 5.31e-15 77.8

Find 127 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTATATCTGTGATAAT+TGG 0.171336 2_1:-65627453 Msa0218460:three_prime_UTR
AGAGCAGTTGATGGTATATT+TGG 0.176792 2_1:-65629916 Msa0218460:CDS
GCGGCGACGGTGATTGTTTC+TGG 0.190594 2_1:-65631458 Msa0218460:CDS
ACAACCGCCATTAATTAAAA+TGG 0.215842 2_1:+65631509 None:intergenic
CTTTGCTGGTGGTGCATCTA+TGG 0.236164 2_1:-65628990 Msa0218460:CDS
GTTGATGGTATATTTGGATT+TGG 0.272872 2_1:-65629910 Msa0218460:CDS
ATATTGATTGTGTGCACAAT+AGG 0.281707 2_1:-65627409 Msa0218460:three_prime_UTR
GGTGGAGGAATTCTGGTTCT+TGG 0.284857 2_1:-65629799 Msa0218460:CDS
TTAGCTTTAGATGATTCTTT+AGG 0.298617 2_1:-65627376 Msa0218460:three_prime_UTR
TCATCACAAGGGATTGCTTC+TGG 0.311244 2_1:-65629856 Msa0218460:CDS
TAGCTCTGGTGGAGGAATTC+TGG 0.317072 2_1:-65629806 Msa0218460:CDS
TGCTCTTACACTTTCCAGTA+TGG 0.324596 2_1:-65630195 Msa0218460:CDS
TTGATGGTATATTTGGATTT+GGG 0.334758 2_1:-65629909 Msa0218460:CDS
TTGAATTACCCGACTTGAAA+TGG 0.337659 2_1:+65631281 None:intergenic
GTAACACTGATTTGCAGCTT+TGG 0.338989 2_1:-65627548 Msa0218460:CDS
CGTCGCCGCCGTTAACAATA+TGG 0.346244 2_1:+65631472 None:intergenic
CGTGTCTGATACAATGCATT+TGG 0.348942 2_1:-65630145 Msa0218460:CDS
GTTGTTGATTTCGCTGTTCA+TGG 0.357181 2_1:-65631314 Msa0218460:CDS
CAATAGAATTCTGTTGTATA+AGG 0.358354 2_1:+65628948 None:intergenic
GTATTCTCTCATTGTCTTAG+AGG 0.362226 2_1:-65629832 Msa0218460:CDS
AGAGGCACCATTGTTGATTC+TGG 0.363062 2_1:-65629448 Msa0218460:CDS
TCCACAGACAAGTGGGTTGC+AGG 0.365572 2_1:-65630453 Msa0218460:intron
GGTCAAGGAGTAACAATTCT+AGG 0.373274 2_1:-65628264 Msa0218460:CDS
CTGTACGTACGGTTGTTTCC+AGG 0.377988 2_1:-65629180 Msa0218460:CDS
CAAGTAAGTCTGAACTTTGC+TGG 0.395862 2_1:-65629004 Msa0218460:CDS
GGTGCAGCAGTGTGGTGTAT+TGG 0.396578 2_1:-65628303 Msa0218460:CDS
ATTTGCACATAAAATTCAAC+TGG 0.400042 2_1:+65630527 None:intergenic
TATAAAGAAGGAACCGGTTA+AGG 0.402239 2_1:+65631635 None:intergenic
ACACTGGAAGTGATGTTCTC+TGG 0.404650 2_1:-65630502 Msa0218460:CDS
TAATCTCTTGTTCTGACAAA+AGG 0.408641 2_1:-65630272 Msa0218460:CDS
TTCCGCTACCATCTCCATAC+TGG 0.415108 2_1:+65630181 None:intergenic
AGTGGAGTATAAACTATGTT+AGG 0.415808 2_1:+65629763 None:intergenic
CAAAATTGTTGTTTACGATC+TGG 0.415968 2_1:-65627861 Msa0218460:CDS
TTGTCAAGTCTCCACTCTGC+TGG 0.418743 2_1:+65629947 None:intergenic
TATTGATTGTGTGCACAATA+GGG 0.419892 2_1:-65627408 Msa0218460:three_prime_UTR
TTCTTGCAGTCTTCTTCAAA+TGG 0.427647 2_1:-65631338 Msa0218460:CDS
AAAACAACAACAACCTTAAC+CGG 0.429528 2_1:-65631648 Msa0218460:five_prime_UTR
AGAGCACTGGTTGGTCTGAC+TGG 0.433140 2_1:+65630212 None:intergenic
ATTCACCGCCATATTGTTAA+CGG 0.438617 2_1:-65631480 Msa0218460:CDS
CCTTTGATCCATTTCAAGTC+GGG 0.440444 2_1:-65631289 Msa0218460:intron
GTTAATGTTTCTGCATCAAC+TGG 0.443678 2_1:-65627671 Msa0218460:CDS
GAATCATGTGAAGTAATGAT+TGG 0.453341 2_1:+65627332 None:intergenic
GGAGATTTATCAAACATTGA+TGG 0.458467 2_1:-65629250 Msa0218460:CDS
TAAGAAACATTGATTTCCCC+TGG 0.458930 2_1:+65629162 None:intergenic
CTGGTTGGTCTGACTGGAAC+AGG 0.461396 2_1:+65630218 None:intergenic
TGGTCGGTCAACGCATTGGA+TGG 0.464375 2_1:-65627841 Msa0218460:CDS
ATGTTCTCTAACATCATCAT+TGG 0.471641 2_1:+65631719 None:intergenic
CACTGGAAGTGATGTTCTCT+GGG 0.471938 2_1:-65630501 Msa0218460:CDS
GGACTTGCGTCGTCAAAGAC+AGG 0.473584 2_1:-65627587 Msa0218460:CDS
AAATCTGACAGAGCAGTTGA+TGG 0.478478 2_1:-65629925 Msa0218460:CDS
TCTGGTTCTTGGTGAGATTG+TGG 0.485463 2_1:-65629788 Msa0218460:CDS
ATCTCCGGCGACTCTAACGT+TGG 0.491902 2_1:-65631435 Msa0218460:CDS
TTTAGCATACCTTGCAGAAG+AGG 0.496730 2_1:-65629419 Msa0218460:CDS
GGAGATGGTAGCGGAACCTC+AGG 0.500285 2_1:-65630174 Msa0218460:CDS
GGAAGCAATTCTTTACATGA+TGG 0.505206 2_1:-65627608 Msa0218460:CDS
AATGTTTCTTAATTACCGAC+AGG 0.509619 2_1:-65629150 Msa0218460:intron
ACTGTATATAAAGAAGGAAC+CGG 0.510801 2_1:+65631629 None:intergenic
GGTGATTGTTTCTGGATCTC+CGG 0.513289 2_1:-65631450 Msa0218460:CDS
GAGGATGTTGATGAACTCCT+AGG 0.515381 2_1:+65630297 None:intergenic
ATCTCACAGCTCTCATCACA+AGG 0.517730 2_1:-65629868 Msa0218460:CDS
GTTACTACTGTATATAAAGA+AGG 0.522923 2_1:+65631623 None:intergenic
TATTGGCTTTCAGAAAAGCC+AGG 0.524879 2_1:-65628286 Msa0218460:CDS
GATCTGGTCGGTCAACGCAT+TGG 0.526025 2_1:-65627845 Msa0218460:CDS
CATATTGTTAACGGCGGCGA+CGG 0.527436 2_1:-65631471 Msa0218460:CDS
TCAAAGCTAGAGACTTGTTA+AGG 0.527714 2_1:-65631370 Msa0218460:CDS
CTTTCCAACGTTAGAGTCGC+CGG 0.530143 2_1:+65631431 None:intergenic
TGTACGTACGGTTGTTTCCA+GGG 0.530182 2_1:-65629179 Msa0218460:CDS
ATGGATCGACTTGAAGTGCC+TGG 0.539684 2_1:+65629494 None:intergenic
TACACTTTCCAGTATGGAGA+TGG 0.539809 2_1:-65630189 Msa0218460:CDS
TGTAGGTTTAAGTTGTAATG+AGG 0.541851 2_1:+65629535 None:intergenic
GTTTCTGCATCAACTGGCAC+TGG 0.543133 2_1:-65627665 Msa0218460:CDS
GAGCATATCTGTCAACGGCC+AGG 0.546917 2_1:-65629512 Msa0218460:CDS
AAACTCACCGCATTGACAAA+GGG 0.548435 2_1:+65629388 None:intergenic
GCAGAAAGAGAGAAAGAGAG+AGG 0.549953 2_1:+65631746 None:intergenic
TGTCTTAGAGGAGATAGCTC+TGG 0.550304 2_1:-65629820 Msa0218460:CDS
ACCTTTGATCCATTTCAAGT+CGG 0.554751 2_1:-65631290 Msa0218460:CDS
AGCTCAATTCCATGATTCGT+CGG 0.558726 2_1:+65631401 None:intergenic
AATACCACAATCTGTACGTA+CGG 0.559219 2_1:-65629191 Msa0218460:CDS
GAAACTCACCGCATTGACAA+AGG 0.562074 2_1:+65629387 None:intergenic
CGTTGACAGATATGCTCTGT+AGG 0.566016 2_1:+65629518 None:intergenic
CAGAAAGAGAGAAAGAGAGA+GGG 0.572348 2_1:+65631747 None:intergenic
AACGGTTGTCCACAGACAAG+TGG 0.572605 2_1:-65630461 Msa0218460:CDS
ACCTGCAACCCACTTGTCTG+TGG 0.577779 2_1:+65630452 None:intergenic
GGTCGGTCAACGCATTGGAT+GGG 0.580910 2_1:-65627840 Msa0218460:CDS
CCCGACTTGAAATGGATCAA+AGG 0.582246 2_1:+65631289 None:intergenic
AGTGGAAATAGAACATACAT+AGG 0.583122 2_1:+65627472 None:intergenic
GAATTGTTACTCCTTGACCC+TGG 0.585059 2_1:+65628268 None:intergenic
TGCACATAAAATTCAACTGG+AGG 0.588358 2_1:+65630530 None:intergenic
ACTGGAAAGTGTAAGAGCAC+TGG 0.588565 2_1:+65630199 None:intergenic
ATTGTTGTTTACGATCTGGT+CGG 0.593128 2_1:-65627857 Msa0218460:CDS
GTCAGTTGTAGCTCTTGCAA+CGG 0.594137 2_1:-65630479 Msa0218460:CDS
GCTAGAGACTTGTTAAGGCA+TGG 0.596247 2_1:-65631365 Msa0218460:CDS
AGAAGTGAATACGTGAATGC+TGG 0.597995 2_1:-65627641 Msa0218460:CDS
TTTCAGAAAAGCCAGGGTCA+AGG 0.603671 2_1:-65628279 Msa0218460:CDS
TTCCAGTATGGAGATGGTAG+CGG 0.610454 2_1:-65630183 Msa0218460:CDS
ACAACCGTACGTACAGATTG+TGG 0.610972 2_1:+65629187 None:intergenic
GATCATAAGCCTCTTCTGCA+AGG 0.611239 2_1:+65629410 None:intergenic
GACTTGCGTCGTCAAAGACA+GGG 0.612992 2_1:-65627586 Msa0218460:CDS
CTTAGAGGAGATAGCTCTGG+TGG 0.612995 2_1:-65629817 Msa0218460:CDS
AGCTGAAGAATTTGTAGACA+CGG 0.613446 2_1:+65630104 None:intergenic
GCTTACTGTGATGGAACAAG+TGG 0.613732 2_1:+65629745 None:intergenic
AGGATGTTGATGAACTCCTA+GGG 0.614361 2_1:+65630298 None:intergenic
TACGTGAATGCTGGAGAGAT+AGG 0.622109 2_1:-65627632 Msa0218460:CDS
GTACGTACGGTTGTTTCCAG+GGG 0.623948 2_1:-65629178 Msa0218460:CDS
TCTGACAAAAGGTGCAACAG+TGG 0.632626 2_1:-65630261 Msa0218460:CDS
GCAAAGTTCAGACTTACTTG+AGG 0.643364 2_1:+65629007 None:intergenic
TTTGCAACATCAAGCAACAG+AGG 0.646159 2_1:-65629466 Msa0218460:CDS
GTGAATGCTGGAGAGATAGG+TGG 0.646271 2_1:-65627629 Msa0218460:CDS
ATTGGCTTTCAGAAAAGCCA+GGG 0.649058 2_1:-65628285 Msa0218460:CDS
AGAGGAGATAGCTCTGGTGG+AGG 0.653271 2_1:-65629814 Msa0218460:CDS
CTACAGAGCATATCTGTCAA+CGG 0.662152 2_1:-65629517 Msa0218460:CDS
GAAAGTGTAAGAGCACTGGT+TGG 0.666621 2_1:+65630203 None:intergenic
TCAATATTGAAAATAACATG+TGG 0.667687 2_1:+65627425 None:intergenic
CGCCGCCGTTAACAATATGG+CGG 0.668764 2_1:+65631475 None:intergenic
CAATTATCACAGATATACAG+TGG 0.670628 2_1:+65627454 None:intergenic
TGTTGTATAAGGTAGTCCTG+TGG 0.671726 2_1:+65628959 None:intergenic
ACGGTTGTCCACAGACAAGT+GGG 0.671786 2_1:-65630460 Msa0218460:CDS
AGTTGTTCCAGAATCAACAA+TGG 0.673134 2_1:+65629441 None:intergenic
CACCGCCATATTGTTAACGG+CGG 0.679075 2_1:-65631477 Msa0218460:CDS
TTATGATCCCTTTGTCAATG+CGG 0.686569 2_1:-65629395 Msa0218460:intron
ATCAGACACGTAATAGCCTG+AGG 0.690351 2_1:+65630158 None:intergenic
TACAGGGTGGTGCAGCAGTG+TGG 0.694411 2_1:-65628311 Msa0218460:intron
GTAAGTCTGAACTTTGCTGG+TGG 0.697231 2_1:-65629001 Msa0218460:CDS
AGTTGTAGTAACCAGCAGAG+TGG 0.699553 2_1:-65629958 Msa0218460:CDS
CAAGGAGTAACAATTCTAGG+AGG 0.710587 2_1:-65628261 Msa0218460:intron
GTCAGAACAAGAGATTAACG+AGG 0.724638 2_1:+65630278 None:intergenic
TCTCACAGCTCTCATCACAA+GGG 0.756077 2_1:-65629867 Msa0218460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAACCATTTTAATTAA+TGG - chr2_1:65627553-65627572 Msa0218460:CDS 10.0%
!!! AATTTCACTTTTTTTGATAA+AGG - chr2_1:65627814-65627833 Msa0218460:intron 15.0%
!!! ATTTCACTTTTTTTGATAAA+GGG - chr2_1:65627815-65627834 Msa0218460:intron 15.0%
!! ATCTATAATTCTTCAATTTA+TGG - chr2_1:65627952-65627971 Msa0218460:intron 15.0%
!!! TCAATTTTGTTTTCTATTTT+TGG - chr2_1:65628127-65628146 Msa0218460:intron 15.0%
!!! AATAGCAATTTTATTTTCAA+GGG + chr2_1:65629349-65629368 None:intergenic 15.0%
!!! TAATAGCAATTTTATTTTCA+AGG + chr2_1:65629350-65629369 None:intergenic 15.0%
!!! TAACTTAAAAGTATTATCTT+TGG + chr2_1:65630212-65630231 None:intergenic 15.0%
!! TAAAATCAAAATCAGATTAA+TGG + chr2_1:65630283-65630302 None:intergenic 15.0%
!! ATTTGCAATTCTAATATATT+TGG - chr2_1:65630430-65630449 Msa0218460:intron 15.0%
!!! TGTATATCATTGTTTTTAAT+GGG + chr2_1:65631041-65631060 None:intergenic 15.0%
!!! TAAACCATTTTAATTAATGG+CGG - chr2_1:65627556-65627575 Msa0218460:CDS 20.0%
!!! TTTTTGGATTTCATTTTTAG+TGG - chr2_1:65627891-65627910 Msa0218460:intron 20.0%
!!! TGTGTTTGATTTAAAATTGA+TGG - chr2_1:65628475-65628494 Msa0218460:intron 20.0%
!! ATATAATGGTTTACTGTTTA+TGG - chr2_1:65628716-65628735 Msa0218460:intron 20.0%
!!! TTATTGGTTTAATCTAATCT+CGG - chr2_1:65629064-65629083 Msa0218460:intron 20.0%
!! AATCGTAAAAAATGTACAAA+TGG + chr2_1:65629962-65629981 None:intergenic 20.0%
!!! TTTTCTTTTTCATTTTTCTG+AGG - chr2_1:65630164-65630183 Msa0218460:CDS 20.0%
!! ATTGAACGAATCATTTATTA+AGG - chr2_1:65630365-65630384 Msa0218460:intron 20.0%
!! AAAAAGTAATAGATTTCAGA+TGG + chr2_1:65630566-65630585 None:intergenic 20.0%
!! ATCAACAATATCTAAGAATT+TGG + chr2_1:65630629-65630648 None:intergenic 20.0%
!! AAATAAATGCATGTAATCAA+AGG + chr2_1:65630653-65630672 None:intergenic 20.0%
!! AAACATTTCCTTCTAAATAT+TGG + chr2_1:65630872-65630891 None:intergenic 20.0%
!!! ATTTTAAATCCCAATAGTAA+TGG + chr2_1:65630999-65631018 None:intergenic 20.0%
!!! GTGTATATCATTGTTTTTAA+TGG + chr2_1:65631042-65631061 None:intergenic 20.0%
!! TTGTTCATAAATAATCTGTT+AGG - chr2_1:65631091-65631110 Msa0218460:intron 20.0%
!! TGTTCATAAATAATCTGTTA+GGG - chr2_1:65631092-65631111 Msa0218460:intron 20.0%
!!! TGTTTTTAATTAAACAATGC+AGG - chr2_1:65631365-65631384 Msa0218460:CDS 20.0%
!! TCAATATTGAAAATAACATG+TGG + chr2_1:65631647-65631666 None:intergenic 20.0%
! TTGTAGTGTGACAAAAAATT+TGG + chr2_1:65627295-65627314 None:intergenic 25.0%
! GTTACTACTGTATATAAAGA+AGG + chr2_1:65627449-65627468 None:intergenic 25.0%
!!! GGTTTTACTTTTCATGTTTT+TGG - chr2_1:65627840-65627859 Msa0218460:CDS 25.0%
!!! TTTTAGTGGATTTTGAGTAA+TGG - chr2_1:65627905-65627924 Msa0218460:intron 25.0%
!!! TTTAGTGGATTTTGAGTAAT+GGG - chr2_1:65627906-65627925 Msa0218460:intron 25.0%
!!! TAGTTTAGTTTAGTTCTCTA+TGG - chr2_1:65628094-65628113 Msa0218460:intron 25.0%
! TAGTTTCTTTAAGTGATGAT+AGG - chr2_1:65628161-65628180 Msa0218460:intron 25.0%
! CACTTATAGAAACCATATAT+TGG + chr2_1:65628187-65628206 None:intergenic 25.0%
! AGATAAGATATAATGCAAAG+AGG + chr2_1:65628436-65628455 None:intergenic 25.0%
! ATTTGCACATAAAATTCAAC+TGG + chr2_1:65628545-65628564 None:intergenic 25.0%
! GATGGAATATGTCAATATAA+TGG - chr2_1:65628702-65628721 Msa0218460:intron 25.0%
!!! CATTTGGATACTATTTTTGA+GGG - chr2_1:65628940-65628959 Msa0218460:intron 25.0%
!!! TTTTTTTCCTTCGTGTTTAT+TGG - chr2_1:65629048-65629067 Msa0218460:intron 25.0%
!! TTGATGGTATATTTGGATTT+GGG - chr2_1:65629160-65629179 Msa0218460:CDS 25.0%
! TACTTAAGTTAACGAAAAGA+AGG + chr2_1:65629379-65629398 None:intergenic 25.0%
!! AACCCATTTTCAAATATTTC+AGG - chr2_1:65629511-65629530 Msa0218460:CDS 25.0%
!!! CATTAACATTATGTTGCTTT+AGG - chr2_1:65629736-65629755 Msa0218460:intron 25.0%
!!! GTACATTTTTTACGATTATG+TGG - chr2_1:65629965-65629984 Msa0218460:intron 25.0%
! ACTAAACACAATAATACGAA+AGG + chr2_1:65630027-65630046 None:intergenic 25.0%
! CAATAGAATTCTGTTGTATA+AGG + chr2_1:65630124-65630143 None:intergenic 25.0%
!!! TTTTTCATTTTTCTGAGGAT+TGG - chr2_1:65630169-65630188 Msa0218460:CDS 25.0%
! ATGTAAAATGTCGTAAAGAA+AGG + chr2_1:65630332-65630351 None:intergenic 25.0%
! GTAGTACTTGAGAATAATTT+CGG + chr2_1:65630403-65630422 None:intergenic 25.0%
! ATAGATTGCAAGGATAATAA+AGG + chr2_1:65630466-65630485 None:intergenic 25.0%
!!! TTACTTTTTAGTGTAGAGAA+AGG - chr2_1:65630577-65630596 Msa0218460:intron 25.0%
!!! CTAAATTTTTGAGTTCAAAG+TGG + chr2_1:65630841-65630860 None:intergenic 25.0%
! ATCATGAACCAATATTTAGA+AGG - chr2_1:65630861-65630880 Msa0218460:intron 25.0%
! TCATACTAAAAGTTTATACG+TGG + chr2_1:65630919-65630938 None:intergenic 25.0%
!!! TAGTAATGGTGATCATTTTT+TGG + chr2_1:65630985-65631004 None:intergenic 25.0%
! AAAATGATCACCATTACTAT+TGG - chr2_1:65630986-65631005 Msa0218460:intron 25.0%
! AAATGATCACCATTACTATT+GGG - chr2_1:65630987-65631006 Msa0218460:intron 25.0%
! AAATTCACTATATGTCTTTC+TGG + chr2_1:65631286-65631305 None:intergenic 25.0%
! GACATATAGTGAATTTCATA+TGG - chr2_1:65631290-65631309 Msa0218460:CDS 25.0%
!!! TTAGCTTTAGATGATTCTTT+AGG - chr2_1:65631693-65631712 Msa0218460:five_prime_UTR 25.0%
ATGTTCTCTAACATCATCAT+TGG + chr2_1:65627353-65627372 None:intergenic 30.0%
!! TTTTGTTTGGACAAGAGTTA+AGG + chr2_1:65627404-65627423 None:intergenic 30.0%
!!! AGGTTGTTGTTGTTTTTGTT+TGG + chr2_1:65627417-65627436 None:intergenic 30.0%
AAAACAACAACAACCTTAAC+CGG - chr2_1:65627421-65627440 Msa0218460:three_prime_UTR 30.0%
ACTGTATATAAAGAAGGAAC+CGG + chr2_1:65627443-65627462 None:intergenic 30.0%
ACAACCGCCATTAATTAAAA+TGG + chr2_1:65627563-65627582 None:intergenic 30.0%
!!! CACTTTTTTTGATAAAGGGT+TGG - chr2_1:65627819-65627838 Msa0218460:intron 30.0%
!!! GAATCAAGTTGAATGCTTTT+TGG - chr2_1:65627875-65627894 Msa0218460:CDS 30.0%
! AGAAAGCAATTTAGAAGTGT+TGG + chr2_1:65628315-65628334 None:intergenic 30.0%
TGTAAGCAAAACTAACTTGA+AGG + chr2_1:65628344-65628363 None:intergenic 30.0%
!! TAAAATTGATGGACTATTGC+AGG - chr2_1:65628486-65628505 Msa0218460:intron 30.0%
!! TATTTTACAAAGGTGCAGTT+AGG - chr2_1:65628512-65628531 Msa0218460:intron 30.0%
! TTTTATGTGCAAATTGACAC+TGG - chr2_1:65628551-65628570 Msa0218460:intron 30.0%
TAATCTCTTGTTCTGACAAA+AGG - chr2_1:65628797-65628816 Msa0218460:intron 30.0%
!!! GCATTTGGATACTATTTTTG+AGG - chr2_1:65628939-65628958 Msa0218460:intron 30.0%
GATTAAACCAATAAACACGA+AGG + chr2_1:65629058-65629077 None:intergenic 30.0%
!! GTTGATGGTATATTTGGATT+TGG - chr2_1:65629159-65629178 Msa0218460:CDS 30.0%
AGTGGAGTATAAACTATGTT+AGG + chr2_1:65629309-65629328 None:intergenic 30.0%
TTAACATTTGATTATGCTCG+TGG + chr2_1:65629476-65629495 None:intergenic 30.0%
GGCCTGAAATATTTGAAAAT+GGG + chr2_1:65629516-65629535 None:intergenic 30.0%
AGGCCTGAAATATTTGAAAA+TGG + chr2_1:65629517-65629536 None:intergenic 30.0%
!! TGTAGGTTTAAGTTGTAATG+AGG + chr2_1:65629537-65629556 None:intergenic 30.0%
! TAGCAATCATGTCATGTTTT+TGG - chr2_1:65629789-65629808 Msa0218460:CDS 30.0%
GGAGATTTATCAAACATTGA+TGG - chr2_1:65629819-65629838 Msa0218460:CDS 30.0%
AATGTTTCTTAATTACCGAC+AGG - chr2_1:65629919-65629938 Msa0218460:CDS 30.0%
ATAAAAACATCCTAACCTGT+CGG + chr2_1:65629937-65629956 None:intergenic 30.0%
! CTTTACGACATTTTACATGA+TGG - chr2_1:65630334-65630353 Msa0218460:intron 30.0%
CGAATCATTTATTAAGGCAT+AGG - chr2_1:65630371-65630390 Msa0218460:intron 30.0%
AACTAAACAGATAGATTGCA+AGG + chr2_1:65630476-65630495 None:intergenic 30.0%
GCATTTAGTGAGAAAACATA+CGG + chr2_1:65630718-65630737 None:intergenic 30.0%
! TGTTTTCTCACTAAATGCTA+CGG - chr2_1:65630720-65630739 Msa0218460:intron 30.0%
TAGTTGTATAACACTCTTGA+AGG + chr2_1:65631129-65631148 None:intergenic 30.0%
!! TCTTTGACTTCTTTGTGTTT+TGG - chr2_1:65631166-65631185 Msa0218460:intron 30.0%
!! CAAAATTGTTGTTTACGATC+TGG - chr2_1:65631208-65631227 Msa0218460:intron 30.0%
TAGAATCTAATGCAATGTCA+AGG + chr2_1:65631338-65631357 None:intergenic 30.0%
AGTGGAAATAGAACATACAT+AGG + chr2_1:65631600-65631619 None:intergenic 30.0%
CAATTATCACAGATATACAG+TGG + chr2_1:65631618-65631637 None:intergenic 30.0%
CACTGTATATCTGTGATAAT+TGG - chr2_1:65631616-65631635 Msa0218460:five_prime_UTR 30.0%
! ATATTGATTGTGTGCACAAT+AGG - chr2_1:65631660-65631679 Msa0218460:five_prime_UTR 30.0%
! TATTGATTGTGTGCACAATA+GGG - chr2_1:65631661-65631680 Msa0218460:five_prime_UTR 30.0%
GAATCATGTGAAGTAATGAT+TGG + chr2_1:65631740-65631759 None:intergenic 30.0%
TATAAAGAAGGAACCGGTTA+AGG + chr2_1:65627437-65627456 None:intergenic 35.0%
ATTCACCGCCATATTGTTAA+CGG - chr2_1:65627589-65627608 Msa0218460:CDS 35.0%
!! TCAAAGCTAGAGACTTGTTA+AGG - chr2_1:65627699-65627718 Msa0218460:intron 35.0%
TTCTTGCAGTCTTCTTCAAA+TGG - chr2_1:65627731-65627750 Msa0218460:intron 35.0%
! ACCTTTGATCCATTTCAAGT+CGG - chr2_1:65627779-65627798 Msa0218460:intron 35.0%
! TTGAATTACCCGACTTGAAA+TGG + chr2_1:65627791-65627810 None:intergenic 35.0%
AGTGATGATAGGCCAATATA+TGG - chr2_1:65628172-65628191 Msa0218460:intron 35.0%
AAAGATAAGCTGCACTAAGA+TGG + chr2_1:65628412-65628431 None:intergenic 35.0%
! TTGCAGGCTCTATTTTACAA+AGG - chr2_1:65628502-65628521 Msa0218460:intron 35.0%
TGCACATAAAATTCAACTGG+AGG + chr2_1:65628542-65628561 None:intergenic 35.0%
AACAGTGAACAATGTAGAGA+TGG - chr2_1:65628684-65628703 Msa0218460:intron 35.0%
AGCTGAAGAATTTGTAGACA+CGG + chr2_1:65628968-65628987 None:intergenic 35.0%
!! AGAGCAGTTGATGGTATATT+TGG - chr2_1:65629153-65629172 Msa0218460:CDS 35.0%
GTATTCTCTCATTGTCTTAG+AGG - chr2_1:65629237-65629256 Msa0218460:CDS 35.0%
AATTGAGATTGCTCTCATCA+TGG + chr2_1:65629403-65629422 None:intergenic 35.0%
AGATCTGTGTGTTTGTTCTT+AGG - chr2_1:65629449-65629468 Msa0218460:CDS 35.0%
CTTGATGTTGCAAAAACTGA+TGG + chr2_1:65629597-65629616 None:intergenic 35.0%
AGTTGTTCCAGAATCAACAA+TGG + chr2_1:65629631-65629650 None:intergenic 35.0%
TTATGATCCCTTTGTCAATG+CGG - chr2_1:65629674-65629693 Msa0218460:intron 35.0%
!!! ATCATGTCATGTTTTTGGCT+TGG - chr2_1:65629794-65629813 Msa0218460:CDS 35.0%
AATACCACAATCTGTACGTA+CGG - chr2_1:65629878-65629897 Msa0218460:CDS 35.0%
!! TAAGAAACATTGATTTCCCC+TGG + chr2_1:65629910-65629929 None:intergenic 35.0%
TTCTTAATTACCGACAGGTT+AGG - chr2_1:65629924-65629943 Msa0218460:CDS 35.0%
!!! ATCTATGGTTTTAAGACCAC+AGG - chr2_1:65630094-65630113 Msa0218460:CDS 35.0%
!!! CATTTTTCTGAGGATTGGTT+TGG - chr2_1:65630174-65630193 Msa0218460:CDS 35.0%
AGCTTATGCTTCACTTTGTT+TGG - chr2_1:65630682-65630701 Msa0218460:intron 35.0%
!! ATTGTTGTTTACGATCTGGT+CGG - chr2_1:65631212-65631231 Msa0218460:intron 35.0%
! GTTAATGTTTCTGCATCAAC+TGG - chr2_1:65631398-65631417 Msa0218460:CDS 35.0%
GGAAGCAATTCTTTACATGA+TGG - chr2_1:65631461-65631480 Msa0218460:CDS 35.0%
CAGAAAGAGAGAAAGAGAGA+GGG + chr2_1:65627325-65627344 None:intergenic 40.0%
AGCTCAATTCCATGATTCGT+CGG + chr2_1:65627671-65627690 None:intergenic 40.0%
!! GTTGTTGATTTCGCTGTTCA+TGG - chr2_1:65627755-65627774 Msa0218460:intron 40.0%
! CCTTTGATCCATTTCAAGTC+GGG - chr2_1:65627780-65627799 Msa0218460:intron 40.0%
GCATCAACACTTCAGATTGA+AGG - chr2_1:65628249-65628268 Msa0218460:intron 40.0%
! ACTTCAGATTGAAGGTGTGT+CGG - chr2_1:65628257-65628276 Msa0218460:intron 40.0%
! ATTTGCGTAAGTGTCGTGTT+GGG - chr2_1:65628383-65628402 Msa0218460:intron 40.0%
!!! AGCTCAATTTTTTCGACCCT+AGG - chr2_1:65628755-65628774 Msa0218460:intron 40.0%
! AGGATGTTGATGAACTCCTA+GGG + chr2_1:65628774-65628793 None:intergenic 40.0%
GTCAGAACAAGAGATTAACG+AGG + chr2_1:65628794-65628813 None:intergenic 40.0%
TGCTCTTACACTTTCCAGTA+TGG - chr2_1:65628874-65628893 Msa0218460:intron 40.0%
TACACTTTCCAGTATGGAGA+TGG - chr2_1:65628880-65628899 Msa0218460:intron 40.0%
CGTGTCTGATACAATGCATT+TGG - chr2_1:65628924-65628943 Msa0218460:intron 40.0%
! TCTTCAGCTCCTGTAGTTTT+TGG - chr2_1:65628979-65628998 Msa0218460:CDS 40.0%
! CTTCAGCTCCTGTAGTTTTT+GGG - chr2_1:65628980-65628999 Msa0218460:CDS 40.0%
AAAGCTCACCCAAAAACTAC+AGG + chr2_1:65628991-65629010 None:intergenic 40.0%
GAGCTTTCATGAGCATGAAA+TGG - chr2_1:65629004-65629023 Msa0218460:CDS 40.0%
CTGCTCGATTCACAAAGTAA+CGG + chr2_1:65629093-65629112 None:intergenic 40.0%
AAATCTGACAGAGCAGTTGA+TGG - chr2_1:65629144-65629163 Msa0218460:intron 40.0%
!! TTTTCAAGGGCTTACTGTGA+TGG + chr2_1:65629336-65629355 None:intergenic 40.0%
CTACAGAGCATATCTGTCAA+CGG - chr2_1:65629552-65629571 Msa0218460:intron 40.0%
TTTGCAACATCAAGCAACAG+AGG - chr2_1:65629603-65629622 Msa0218460:intron 40.0%
TTTAGCATACCTTGCAGAAG+AGG - chr2_1:65629650-65629669 Msa0218460:intron 40.0%
! AAACTCACCGCATTGACAAA+GGG + chr2_1:65629684-65629703 None:intergenic 40.0%
! TCAATGCGGTGAGTTTCTTT+TGG - chr2_1:65629688-65629707 Msa0218460:intron 40.0%
! CAATGCGGTGAGTTTCTTTT+GGG - chr2_1:65629689-65629708 Msa0218460:intron 40.0%
!!! TGTCATGTTTTTGGCTTGGT+TGG - chr2_1:65629798-65629817 Msa0218460:CDS 40.0%
GCAAAGTTCAGACTTACTTG+AGG + chr2_1:65630065-65630084 None:intergenic 40.0%
CAAGTAAGTCTGAACTTTGC+TGG - chr2_1:65630065-65630084 Msa0218460:intron 40.0%
TGTTGTATAAGGTAGTCCTG+TGG + chr2_1:65630113-65630132 None:intergenic 40.0%
AAGTTAGAGTGAGTTGCAGT+TGG - chr2_1:65630226-65630245 Msa0218460:CDS 40.0%
! GTCGTAAAGAAAGGCACATT+AGG + chr2_1:65630323-65630342 None:intergenic 40.0%
GTTTAGTTGAGTGCATTAGC+AGG - chr2_1:65630488-65630507 Msa0218460:CDS 40.0%
GTGAACCTATGCATGTTACA+GGG - chr2_1:65630742-65630761 Msa0218460:intron 40.0%
!! TATTGGCTTTCAGAAAAGCC+AGG - chr2_1:65630783-65630802 Msa0218460:intron 40.0%
!! ATTGGCTTTCAGAAAAGCCA+GGG - chr2_1:65630784-65630803 Msa0218460:intron 40.0%
GGTCAAGGAGTAACAATTCT+AGG - chr2_1:65630805-65630824 Msa0218460:intron 40.0%
CAAGGAGTAACAATTCTAGG+AGG - chr2_1:65630808-65630827 Msa0218460:intron 40.0%
AGAAGTGAATACGTGAATGC+TGG - chr2_1:65631428-65631447 Msa0218460:CDS 40.0%
!! GTAACACTGATTTGCAGCTT+TGG - chr2_1:65631521-65631540 Msa0218460:five_prime_UTR 40.0%
GCAGAAAGAGAGAAAGAGAG+AGG + chr2_1:65627326-65627345 None:intergenic 45.0%
!! GGTGATTGTTTCTGGATCTC+CGG - chr2_1:65627619-65627638 Msa0218460:CDS 45.0%
! AGAGCTTTTCCGACGAATCA+TGG - chr2_1:65627659-65627678 Msa0218460:CDS 45.0%
!! GCTAGAGACTTGTTAAGGCA+TGG - chr2_1:65627704-65627723 Msa0218460:intron 45.0%
! CCCGACTTGAAATGGATCAA+AGG + chr2_1:65627783-65627802 None:intergenic 45.0%
! GATTTGCGTAAGTGTCGTGT+TGG - chr2_1:65628382-65628401 Msa0218460:intron 45.0%
ACACTGGAAGTGATGTTCTC+TGG - chr2_1:65628567-65628586 Msa0218460:intron 45.0%
CACTGGAAGTGATGTTCTCT+GGG - chr2_1:65628568-65628587 Msa0218460:intron 45.0%
GTCAGTTGTAGCTCTTGCAA+CGG - chr2_1:65628590-65628609 Msa0218460:intron 45.0%
! GAGGATGTTGATGAACTCCT+AGG + chr2_1:65628775-65628794 None:intergenic 45.0%
! TCTGACAAAAGGTGCAACAG+TGG - chr2_1:65628808-65628827 Msa0218460:intron 45.0%
!! GAAAGTGTAAGAGCACTGGT+TGG + chr2_1:65628869-65628888 None:intergenic 45.0%
! ACTGGAAAGTGTAAGAGCAC+TGG + chr2_1:65628873-65628892 None:intergenic 45.0%
TTCCAGTATGGAGATGGTAG+CGG - chr2_1:65628886-65628905 Msa0218460:intron 45.0%
ATCAGACACGTAATAGCCTG+AGG + chr2_1:65628914-65628933 None:intergenic 45.0%
AGTTGTAGTAACCAGCAGAG+TGG - chr2_1:65629111-65629130 Msa0218460:intron 45.0%
ATCTCACAGCTCTCATCACA+AGG - chr2_1:65629201-65629220 Msa0218460:CDS 45.0%
TCTCACAGCTCTCATCACAA+GGG - chr2_1:65629202-65629221 Msa0218460:CDS 45.0%
TCATCACAAGGGATTGCTTC+TGG - chr2_1:65629213-65629232 Msa0218460:CDS 45.0%
TGTCTTAGAGGAGATAGCTC+TGG - chr2_1:65629249-65629268 Msa0218460:CDS 45.0%
!! TCTGGTTCTTGGTGAGATTG+TGG - chr2_1:65629281-65629300 Msa0218460:intron 45.0%
! GCTTACTGTGATGGAACAAG+TGG + chr2_1:65629327-65629346 None:intergenic 45.0%
CGTTGACAGATATGCTCTGT+AGG + chr2_1:65629554-65629573 None:intergenic 45.0%
!! AGAGGCACCATTGTTGATTC+TGG - chr2_1:65629621-65629640 Msa0218460:intron 45.0%
GATCATAAGCCTCTTCTGCA+AGG + chr2_1:65629662-65629681 None:intergenic 45.0%
! GAAACTCACCGCATTGACAA+AGG + chr2_1:65629685-65629704 None:intergenic 45.0%
ACAACCGTACGTACAGATTG+TGG + chr2_1:65629885-65629904 None:intergenic 45.0%
! TGTACGTACGGTTGTTTCCA+GGG - chr2_1:65629890-65629909 Msa0218460:CDS 45.0%
GTAAGTCTGAACTTTGCTGG+TGG - chr2_1:65630068-65630087 Msa0218460:intron 45.0%
GGTGAACCTATGCATGTTAC+AGG - chr2_1:65630741-65630760 Msa0218460:intron 45.0%
AACCTATGCATGTTACAGGG+TGG - chr2_1:65630745-65630764 Msa0218460:intron 45.0%
TTTCAGAAAAGCCAGGGTCA+AGG - chr2_1:65630790-65630809 Msa0218460:intron 45.0%
GAATTGTTACTCCTTGACCC+TGG + chr2_1:65630804-65630823 None:intergenic 45.0%
CAAGAAGGTAAAACAGGAGG+AGG + chr2_1:65630950-65630969 None:intergenic 45.0%
!!! ATCATTTTTTGGCCGAAGGC+GGG + chr2_1:65630974-65630993 None:intergenic 45.0%
!!! GATCATTTTTTGGCCGAAGG+CGG + chr2_1:65630975-65630994 None:intergenic 45.0%
!!! GGTGATCATTTTTTGGCCGA+AGG + chr2_1:65630978-65630997 None:intergenic 45.0%
TACGTGAATGCTGGAGAGAT+AGG - chr2_1:65631437-65631456 Msa0218460:CDS 45.0%
! GTGTGCACAATAGGGTTTTC+AGG - chr2_1:65631669-65631688 Msa0218460:five_prime_UTR 45.0%
CACCGCCATATTGTTAACGG+CGG - chr2_1:65627592-65627611 Msa0218460:CDS 50.0%
CATATTGTTAACGGCGGCGA+CGG - chr2_1:65627598-65627617 Msa0218460:CDS 50.0%
CTTTCCAACGTTAGAGTCGC+CGG + chr2_1:65627641-65627660 None:intergenic 50.0%
AACGGTTGTCCACAGACAAG+TGG - chr2_1:65628608-65628627 Msa0218460:intron 50.0%
ACGGTTGTCCACAGACAAGT+GGG - chr2_1:65628609-65628628 Msa0218460:intron 50.0%
TTCCGCTACCATCTCCATAC+TGG + chr2_1:65628891-65628910 None:intergenic 50.0%
TTGTCAAGTCTCCACTCTGC+TGG + chr2_1:65629125-65629144 None:intergenic 50.0%
!! CTTAGAGGAGATAGCTCTGG+TGG - chr2_1:65629252-65629271 Msa0218460:CDS 50.0%
!! TAGCTCTGGTGGAGGAATTC+TGG - chr2_1:65629263-65629282 Msa0218460:CDS 50.0%
!! GGTGGAGGAATTCTGGTTCT+TGG - chr2_1:65629270-65629289 Msa0218460:CDS 50.0%
!! ATGGATCGACTTGAAGTGCC+TGG + chr2_1:65629578-65629597 None:intergenic 50.0%
! CTGTACGTACGGTTGTTTCC+AGG - chr2_1:65629889-65629908 Msa0218460:CDS 50.0%
! GTACGTACGGTTGTTTCCAG+GGG - chr2_1:65629891-65629910 Msa0218460:CDS 50.0%
! CTTTGCTGGTGGTGCATCTA+TGG - chr2_1:65630079-65630098 Msa0218460:intron 50.0%
CACCACCCTGTAACATGCAT+AGG + chr2_1:65630750-65630769 None:intergenic 50.0%
GGGCAAGAAGGTAAAACAGG+AGG + chr2_1:65630953-65630972 None:intergenic 50.0%
!!! TCATTTTTTGGCCGAAGGCG+GGG + chr2_1:65630973-65630992 None:intergenic 50.0%
GTTTCTGCATCAACTGGCAC+TGG - chr2_1:65631404-65631423 Msa0218460:CDS 50.0%
GTGAATGCTGGAGAGATAGG+TGG - chr2_1:65631440-65631459 Msa0218460:CDS 50.0%
GACTTGCGTCGTCAAAGACA+GGG - chr2_1:65631483-65631502 Msa0218460:CDS 50.0%
CGCCGCCGTTAACAATATGG+CGG + chr2_1:65627597-65627616 None:intergenic 55.0%
CGTCGCCGCCGTTAACAATA+TGG + chr2_1:65627600-65627619 None:intergenic 55.0%
ATCTCCGGCGACTCTAACGT+TGG - chr2_1:65627634-65627653 Msa0218460:CDS 55.0%
!! TCCACAGACAAGTGGGTTGC+AGG - chr2_1:65628616-65628635 Msa0218460:intron 55.0%
ACCTGCAACCCACTTGTCTG+TGG + chr2_1:65628620-65628639 None:intergenic 55.0%
!! CTGGTTGGTCTGACTGGAAC+AGG + chr2_1:65628854-65628873 None:intergenic 55.0%
!! AGAGCACTGGTTGGTCTGAC+TGG + chr2_1:65628860-65628879 None:intergenic 55.0%
!! AGAGGAGATAGCTCTGGTGG+AGG - chr2_1:65629255-65629274 Msa0218460:CDS 55.0%
GAGCATATCTGTCAACGGCC+AGG - chr2_1:65629557-65629576 Msa0218460:intron 55.0%
GGTGCAGCAGTGTGGTGTAT+TGG - chr2_1:65630766-65630785 Msa0218460:intron 55.0%
GCGGGGCAAGAAGGTAAAAC+AGG + chr2_1:65630956-65630975 None:intergenic 55.0%
TTACCTTCTTGCCCCGCCTT+CGG - chr2_1:65630959-65630978 Msa0218460:intron 55.0%
GATCTGGTCGGTCAACGCAT+TGG - chr2_1:65631224-65631243 Msa0218460:intron 55.0%
TGGTCGGTCAACGCATTGGA+TGG - chr2_1:65631228-65631247 Msa0218460:intron 55.0%
GGTCGGTCAACGCATTGGAT+GGG - chr2_1:65631229-65631248 Msa0218460:intron 55.0%
GGACTTGCGTCGTCAAAGAC+AGG - chr2_1:65631482-65631501 Msa0218460:CDS 55.0%
GCGGCGACGGTGATTGTTTC+TGG - chr2_1:65627611-65627630 Msa0218460:CDS 60.0%
!! GGAGATGGTAGCGGAACCTC+AGG - chr2_1:65628895-65628914 Msa0218460:intron 60.0%
TACAGGGTGGTGCAGCAGTG+TGG - chr2_1:65630758-65630777 Msa0218460:intron 60.0%
TGGCCGAAGGCGGGGCAAGA+AGG + chr2_1:65630965-65630984 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 65627286 65631805 65627286 ID=Msa0218460;Name=Msa0218460
chr2_1 mRNA 65627286 65631805 65627286 ID=Msa0218460-mRNA-1;Parent=Msa0218460;Name=Msa0218460-mRNA-1;_AED=0.19;_eAED=0.19;_QI=286|0.88|0.9|1|1|1|10|252|517
chr2_1 exon 65627286 65627704 65627286 ID=Msa0218460-mRNA-1:exon:18375;Parent=Msa0218460-mRNA-1
chr2_1 exon 65627828 65627899 65627828 ID=Msa0218460-mRNA-1:exon:18374;Parent=Msa0218460-mRNA-1
chr2_1 exon 65628262 65628328 65628262 ID=Msa0218460-mRNA-1:exon:18373;Parent=Msa0218460-mRNA-1
chr2_1 exon 65628949 65629045 65628949 ID=Msa0218460-mRNA-1:exon:18372;Parent=Msa0218460-mRNA-1
chr2_1 exon 65629151 65629299 65629151 ID=Msa0218460-mRNA-1:exon:18371;Parent=Msa0218460-mRNA-1
chr2_1 exon 65629396 65629558 65629396 ID=Msa0218460-mRNA-1:exon:18370;Parent=Msa0218460-mRNA-1
chr2_1 exon 65629751 65629978 65629751 ID=Msa0218460-mRNA-1:exon:18369;Parent=Msa0218460-mRNA-1
chr2_1 exon 65630090 65630340 65630090 ID=Msa0218460-mRNA-1:exon:18368;Parent=Msa0218460-mRNA-1
chr2_1 exon 65630454 65630583 65630454 ID=Msa0218460-mRNA-1:exon:18367;Parent=Msa0218460-mRNA-1
chr2_1 exon 65631290 65631805 65631290 ID=Msa0218460-mRNA-1:exon:18366;Parent=Msa0218460-mRNA-1
chr2_1 five_prime_UTR 65631520 65631805 65631520 ID=Msa0218460-mRNA-1:five_prime_utr;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65631290 65631519 65631290 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65630454 65630583 65630454 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65630090 65630340 65630090 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65629751 65629978 65629751 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65629396 65629558 65629396 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65629151 65629299 65629151 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65628949 65629045 65628949 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65628262 65628328 65628262 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65627828 65627899 65627828 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 CDS 65627538 65627704 65627538 ID=Msa0218460-mRNA-1:cds;Parent=Msa0218460-mRNA-1
chr2_1 three_prime_UTR 65627286 65627537 65627286 ID=Msa0218460-mRNA-1:three_prime_utr;Parent=Msa0218460-mRNA-1
Gene Sequence

>Msa0218460

ATGGCGGTTGTTTTTATATTCACCGCCATATTGTTAACGGCGGCGACGGTGATTGTTTCTGGATCTCCGGCGACTCTAACGTTGGAAAGAGCTTTTCCGACGAATCATGGAATTGAGCTGAATCAGCTCAAAGCTAGAGACTTGTTAAGGCATGGTAGATTCTTGCAGTCTTCTTCAAATGGTGTTGTTGATTTCGCTGTTCATGGTACCTTTGATCCATTTCAAGTCGGGCTCTATTTTACAAAGGTGCAGTTAGGTACTCCTCCAGTTGAATTTTATGTGCAAATTGACACTGGAAGTGATGTTCTCTGGGTCAGTTGTAGCTCTTGCAACGGTTGTCCACAGACAAGTGGGTTGCAGATTGAGCTCAATTTTTTCGACCCTAGGAGTTCATCAACATCCTCGTTAATCTCTTGTTCTGACAAAAGGTGCAACAGTGGAATACAATCATCAGACGCAACCTGTTCCAGTCAGACCAACCAGTGCTCTTACACTTTCCAGTATGGAGATGGTAGCGGAACCTCAGGCTATTACGTGTCTGATACAATGCATTTGGATACTATTTTTGAGGGATCCGTGTCTACAAATTCTTCAGCTCCTGTAGTTTTTGGTTGTAGTAACCAGCAGAGTGGAGACTTGACAAAATCTGACAGAGCAGTTGATGGTATATTTGGATTTGGGCAACAGCAAATGTCTGTGATCTCACAGCTCTCATCACAAGGGATTGCTTCTGGAGTATTCTCTCATTGTCTTAGAGGAGATAGCTCTGGTGGAGGAATTCTGGTTCTTGGTGAGATTGTGGAGCCTAACATAGTTTATACTCCACTTGTTCCATCACAGCCTCATTACAACTTAAACCTACAGAGCATATCTGTCAACGGCCAGGCACTTCAAGTCGATCCATCAGTTTTTGCAACATCAAGCAACAGAGGCACCATTGTTGATTCTGGAACAACTTTAGCATACCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGCAATCATGTCATGTTTTTGGCTTGGTTGGAGATTTATCAAACATTGATGGTAAAATGATTTTTCAACTACTGCAGATTACAGCTACAATACCACAATCTGTACGTACGGTTGTTTCCAGGGGAAATCAATGTTTCTTAATTACCGACAGTGTCACTAACATATTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGGTTTTAAGACCACAGGACTACCTTATACAACAGAATTCTATTGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAAGCCAGGGTCAAGGAGTAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTACGATCTGGTCGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTTGACAGTTAATGTTTCTGCATCAACTGGCACTGGCAGAAGTGAATACGTGAATGCTGGAGAGATAGGTGGAAGCAATTCTTTACATGATGGACTTGCGTCGTCAAAGACAGGGTTTATAGCACTCTTTGTAACACTGATTTGCAGCTTTGGTTTTTTATAG

Protein sequence

>Msa0218460

MAVVFIFTAILLTAATVIVSGSPATLTLERAFPTNHGIELNQLKARDLLRHGRFLQSSSNGVVDFAVHGTFDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCNGCPQTSGLQIELNFFDPRSSSTSSLISCSDKRCNSGIQSSDATCSSQTNQCSYTFQYGDGSGTSGYYVSDTMHLDTIFEGSVSTNSSAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQQMSVISQLSSQGIASGVFSHCLRGDSSGGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQALQVDPSVFATSSNRGTIVDSGTTLAYLAEEAYDPFVNAQSCHVFGLVGDLSNIDGKMIFQLLQITATIPQSVRTVVSRGNQCFLITDSVTNIFPQVSLNFAGGASMVLRPQDYLIQQNSIGGAAVWCIGFQKSQGQGVTILGDLVLKDKIVVYDLVGQRIGWANYDCSLTVNVSASTGTGRSEYVNAGEIGGSNSLHDGLASSKTGFIALFVTLICSFGFL*