Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071090 | XP_013467789.1 | 93.750 | 704 | 41 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071090 | sp|F4K1B1|RPAP2_ARATH | 41.261 | 761 | 364 | 14 | 20 | 723 | 1 | 735 | 1.58e-171 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071090 | A0A072VJQ7 | 93.750 | 704 | 41 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005620 | Msa0071090 | 0.812542 | 4.022463e-51 | -8.615850e-47 |
| Msa0010770 | Msa0071090 | 0.802837 | 4.641411e-49 | -8.615850e-47 |
| Msa0012710 | Msa0071090 | 0.821126 | 4.764076e-53 | -8.615850e-47 |
| Msa0017320 | Msa0071090 | 0.804213 | 2.406751e-49 | -8.615850e-47 |
| Msa0023330 | Msa0071090 | 0.841722 | 4.000524e-58 | -8.615850e-47 |
| Msa0031180 | Msa0071090 | 0.829619 | 4.650556e-55 | -8.615850e-47 |
| Msa0037120 | Msa0071090 | 0.832766 | 7.840153e-56 | -8.615850e-47 |
| Msa0043500 | Msa0071090 | 0.833816 | 4.291334e-56 | -8.615850e-47 |
| Msa0043650 | Msa0071090 | 0.835466 | 1.651058e-56 | -8.615850e-47 |
| Msa0045340 | Msa0071090 | 0.814965 | 1.177372e-51 | -8.615850e-47 |
| Msa0054820 | Msa0071090 | 0.842884 | 1.968551e-58 | -8.615850e-47 |
| Msa0056450 | Msa0071090 | 0.803290 | 3.740147e-49 | -8.615850e-47 |
| Msa0058610 | Msa0071090 | 0.825713 | 4.034703e-54 | -8.615850e-47 |
| Msa0064920 | Msa0071090 | 0.841902 | 3.585637e-58 | -8.615850e-47 |
| Msa0071090 | Msa0078480 | 0.834458 | 2.962355e-56 | -8.615850e-47 |
| Msa0071090 | Msa0079720 | 0.802299 | 5.991633e-49 | -8.615850e-47 |
| Msa0071090 | Msa0084340 | 0.835541 | 1.579983e-56 | -8.615850e-47 |
| Msa0071090 | Msa0089980 | 0.801324 | 9.499270e-49 | -8.615850e-47 |
| Msa0071090 | Msa0099650 | 0.804319 | 2.286609e-49 | -8.615850e-47 |
| Msa0071090 | Msa0100160 | 0.816240 | 6.123150e-52 | -8.615850e-47 |
| Msa0071090 | Msa0115560 | 0.803560 | 3.288795e-49 | -8.615850e-47 |
| Msa0071090 | Msa0119090 | 0.983611 | 3.230181e-158 | -8.615850e-47 |
| Msa0071090 | Msa0126190 | 0.801108 | 1.052000e-48 | -8.615850e-47 |
| Msa0071090 | Msa0126790 | 0.847011 | 1.514158e-59 | -8.615850e-47 |
| Msa0071090 | Msa0130850 | 0.803225 | 3.858754e-49 | -8.615850e-47 |
| Msa0071090 | Msa0131290 | 0.831815 | 1.348031e-55 | -8.615850e-47 |
| Msa0071090 | Msa0138020 | 0.804940 | 1.696779e-49 | -8.615850e-47 |
| Msa0071090 | Msa0138210 | 0.827820 | 1.266839e-54 | -8.615850e-47 |
| Msa0071090 | Msa0143850 | 0.827539 | 1.479730e-54 | -8.615850e-47 |
| Msa0071090 | Msa0152560 | 0.807413 | 5.116908e-50 | -8.615850e-47 |
| Msa0071090 | Msa0162430 | 0.981356 | 2.164961e-152 | -8.615850e-47 |
| Msa0071090 | Msa0171200 | 0.835176 | 1.954011e-56 | -8.615850e-47 |
| Msa0071090 | Msa0171870 | 0.834653 | 2.645955e-56 | -8.615850e-47 |
| Msa0071090 | Msa0174360 | 0.803773 | 2.970763e-49 | -8.615850e-47 |
| Msa0071090 | Msa0177170 | 0.831772 | 1.381226e-55 | -8.615850e-47 |
| Msa0071090 | Msa0178570 | 0.807667 | 4.520074e-50 | -8.615850e-47 |
| Msa0071090 | Msa0183420 | 0.804366 | 2.236062e-49 | -8.615850e-47 |
| Msa0071090 | Msa0202730 | 0.818110 | 2.325477e-52 | -8.615850e-47 |
| Msa0071090 | Msa0206330 | 0.835211 | 1.914377e-56 | -8.615850e-47 |
| Msa0071090 | Msa0210260 | 0.802249 | 6.136433e-49 | -8.615850e-47 |
| Msa0071090 | Msa0218350 | 0.800677 | 1.288216e-48 | -8.615850e-47 |
| Msa0071090 | Msa0227190 | 0.807394 | 5.164971e-50 | -8.615850e-47 |
| Msa0071090 | Msa0232020 | 0.803379 | 3.586154e-49 | -8.615850e-47 |
| Msa0071090 | Msa0232340 | 0.800136 | 1.660705e-48 | -8.615850e-47 |
| Msa0071090 | Msa0233370 | 0.833840 | 4.232611e-56 | -8.615850e-47 |
| Msa0071090 | Msa0237200 | 0.817991 | 2.474436e-52 | -8.615850e-47 |
| Msa0071090 | Msa0238030 | 0.802154 | 6.417881e-49 | -8.615850e-47 |
| Msa0071090 | Msa0241140 | 0.802395 | 5.725751e-49 | -8.615850e-47 |
| Msa0071090 | Msa0245860 | 0.819860 | 9.303872e-53 | -8.615850e-47 |
| Msa0071090 | Msa0249310 | 0.874284 | 7.619335e-68 | -8.615850e-47 |
| Msa0071090 | Msa0271790 | 0.812333 | 4.468606e-51 | -8.615850e-47 |
| Msa0071090 | Msa0274970 | 0.819236 | 1.290949e-52 | -8.615850e-47 |
| Msa0071090 | Msa0280110 | 0.832724 | 8.028666e-56 | -8.615850e-47 |
| Msa0071090 | Msa0280150 | 0.824975 | 6.032725e-54 | -8.615850e-47 |
| Msa0071090 | Msa0287790 | 0.872087 | 4.162695e-67 | -8.615850e-47 |
| Msa0071090 | Msa0307310 | 0.812040 | 5.178366e-51 | -8.615850e-47 |
| Msa0071090 | Msa0308440 | 0.872368 | 3.356147e-67 | -8.615850e-47 |
| Msa0071090 | Msa0308560 | 0.812433 | 4.250499e-51 | -8.615850e-47 |
| Msa0071090 | Msa0311720 | 0.822769 | 1.983815e-53 | -8.615850e-47 |
| Msa0071090 | Msa0315680 | 0.823592 | 1.275098e-53 | -8.615850e-47 |
| Msa0071090 | Msa0320800 | 0.804691 | 1.913014e-49 | -8.615850e-47 |
| Msa0071090 | Msa0324240 | 0.804796 | 1.819242e-49 | -8.615850e-47 |
| Msa0071090 | Msa0324890 | 0.801437 | 9.010168e-49 | -8.615850e-47 |
| Msa0071090 | Msa0339910 | 0.806983 | 6.310016e-50 | -8.615850e-47 |
| Msa0071090 | Msa0341840 | 0.814172 | 1.763739e-51 | -8.615850e-47 |
| Msa0071090 | Msa0347950 | 0.823461 | 1.368304e-53 | -8.615850e-47 |
| Msa0071090 | Msa0347990 | 0.824093 | 9.728740e-54 | -8.615850e-47 |
| Msa0071090 | Msa0362890 | 0.827662 | 1.382137e-54 | -8.615850e-47 |
| Msa0071090 | Msa0366210 | 0.805285 | 1.437473e-49 | -8.615850e-47 |
| Msa0071090 | Msa0377440 | 0.803817 | 2.908800e-49 | -8.615850e-47 |
| Msa0071090 | Msa0381360 | 0.803981 | 2.689214e-49 | -8.615850e-47 |
| Msa0071090 | Msa0388730 | 0.810379 | 1.187143e-50 | -8.615850e-47 |
| Msa0071090 | Msa0389910 | 0.817511 | 3.175081e-52 | -8.615850e-47 |
| Msa0071090 | Msa0392270 | 0.801007 | 1.103097e-48 | -8.615850e-47 |
| Msa0071090 | Msa0395980 | 0.846854 | 1.672110e-59 | -8.615850e-47 |
| Msa0071090 | Msa0398200 | 0.806487 | 8.032561e-50 | -8.615850e-47 |
| Msa0071090 | Msa0403490 | 0.828504 | 8.668479e-55 | -8.615850e-47 |
| Msa0071090 | Msa0414140 | 0.824287 | 8.759815e-54 | -8.615850e-47 |
| Msa0071090 | Msa0423840 | 0.818241 | 2.171672e-52 | -8.615850e-47 |
| Msa0071090 | Msa0428580 | 0.805767 | 1.138926e-49 | -8.615850e-47 |
| Msa0071090 | Msa0430060 | 0.805433 | 1.338239e-49 | -8.615850e-47 |
| Msa0071090 | Msa0430150 | 0.807720 | 4.403812e-50 | -8.615850e-47 |
| Msa0071090 | Msa0432160 | 0.809604 | 1.742968e-50 | -8.615850e-47 |
| Msa0071090 | Msa0432170 | 0.806457 | 8.151348e-50 | -8.615850e-47 |
| Msa0071090 | Msa0440510 | 0.808524 | 2.969640e-50 | -8.615850e-47 |
| Msa0071090 | Msa0473980 | 0.817981 | 2.487443e-52 | -8.615850e-47 |
| Msa0071090 | Msa0474940 | 0.802926 | 4.448131e-49 | -8.615850e-47 |
| Msa0071090 | Msa0476680 | 0.814617 | 1.406516e-51 | -8.615850e-47 |
| Msa0071090 | Msa0477620 | 0.815477 | 9.061834e-52 | -8.615850e-47 |
| Msa0071090 | Msa0480780 | 0.817201 | 3.728188e-52 | -8.615850e-47 |
| Msa0071090 | Msa0486690 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0071090 | Msa0487720 | 0.811343 | 7.339894e-51 | -8.615850e-47 |
| Msa0071090 | Msa0491000 | 0.827580 | 1.446130e-54 | -8.615850e-47 |
| Msa0071090 | Msa0505740 | 0.820155 | 7.965207e-53 | -8.615850e-47 |
| Msa0071090 | Msa0521010 | 0.809731 | 1.636632e-50 | -8.615850e-47 |
| Msa0071090 | Msa0523050 | 0.803923 | 2.765250e-49 | -8.615850e-47 |
| Msa0071090 | Msa0526020 | 0.813590 | 2.369605e-51 | -8.615850e-47 |
| Msa0071090 | Msa0560500 | 0.805648 | 1.206021e-49 | -8.615850e-47 |
| Msa0071090 | Msa0566350 | 0.817530 | 3.144111e-52 | -8.615850e-47 |
| Msa0071090 | Msa0566750 | 0.810331 | 1.215712e-50 | -8.615850e-47 |
| Msa0071090 | Msa0621600 | 0.825055 | 5.774044e-54 | -8.615850e-47 |
| Msa0071090 | Msa0622120 | 0.817639 | 2.970285e-52 | -8.615850e-47 |
| Msa0071090 | Msa0623990 | 0.817849 | 2.664549e-52 | -8.615850e-47 |
| Msa0071090 | Msa0624060 | 0.833662 | 4.688063e-56 | -8.615850e-47 |
| Msa0071090 | Msa0641730 | 0.800768 | 1.234244e-48 | -8.615850e-47 |
| Msa0071090 | Msa0645530 | 0.829085 | 6.268576e-55 | -8.615850e-47 |
| Msa0071090 | Msa0651560 | 0.814725 | 1.330940e-51 | -8.615850e-47 |
| Msa0071090 | Msa0652690 | 0.814371 | 1.593945e-51 | -8.615850e-47 |
| Msa0071090 | Msa0676130 | 0.824617 | 7.325829e-54 | -8.615850e-47 |
| Msa0071090 | Msa0676180 | 0.825909 | 3.624460e-54 | -8.615850e-47 |
| Msa0071090 | Msa0685090 | 0.825705 | 4.051964e-54 | -8.615850e-47 |
| Msa0071090 | Msa0705390 | 0.816893 | 4.373466e-52 | -8.615850e-47 |
| Msa0071090 | Msa0712560 | 0.800734 | 1.254370e-48 | -8.615850e-47 |
| Msa0071090 | Msa0733250 | 0.807727 | 4.388368e-50 | -8.615850e-47 |
| Msa0071090 | Msa0741070 | 0.806721 | 7.168143e-50 | -8.615850e-47 |
| Msa0071090 | Msa0756380 | 0.808594 | 2.868434e-50 | -8.615850e-47 |
| Msa0071090 | Msa0763890 | 0.823878 | 1.092900e-53 | -8.615850e-47 |
| Msa0071090 | Msa0763920 | 0.842161 | 3.061696e-58 | -8.615850e-47 |
| Msa0071090 | Msa0780280 | 0.804554 | 2.043447e-49 | -8.615850e-47 |
| Msa0071090 | Msa0789560 | 0.840066 | 1.087260e-57 | -8.615850e-47 |
| Msa0071090 | Msa0791090 | 0.819054 | 1.420604e-52 | -8.615850e-47 |
| Msa0071090 | Msa0797770 | 0.814823 | 1.265873e-51 | -8.615850e-47 |
| Msa0071090 | Msa0844110 | 0.821286 | 4.378137e-53 | -8.615850e-47 |
| Msa0071090 | Msa0871430 | 0.800344 | 1.505952e-48 | -8.615850e-47 |
| Msa0071090 | Msa0883520 | 0.802314 | 5.948855e-49 | -8.615850e-47 |
| Msa0071090 | Msa0899970 | 0.820990 | 5.120192e-53 | -8.615850e-47 |
| Msa0071090 | Msa0921420 | 0.802201 | 6.275834e-49 | -8.615850e-47 |
| Msa0071090 | Msa0945240 | 0.821735 | 3.447668e-53 | -8.615850e-47 |
| Msa0071090 | Msa0958030 | 0.805759 | 1.143096e-49 | -8.615850e-47 |
| Msa0071090 | Msa0965080 | 0.800768 | 1.234486e-48 | -8.615850e-47 |
| Msa0071090 | Msa0965290 | 0.808308 | 3.301026e-50 | -8.615850e-47 |
| Msa0071090 | Msa0969330 | 0.800175 | 1.630616e-48 | -8.615850e-47 |
| Msa0071090 | Msa0985220 | 0.831054 | 2.074634e-55 | -8.615850e-47 |
| Msa0071090 | Msa0986510 | 0.800662 | 1.297454e-48 | -8.615850e-47 |
| Msa0071090 | Msa0992580 | 0.806450 | 8.176313e-50 | -8.615850e-47 |
| Msa0071090 | Msa0992600 | 0.816328 | 5.851390e-52 | -8.615850e-47 |
| Msa0071090 | Msa0999680 | 0.805905 | 1.065276e-49 | -8.615850e-47 |
| Msa0071090 | Msa1034500 | 0.800722 | 1.261068e-48 | -8.615850e-47 |
| Msa0071090 | Msa1036740 | 0.803462 | 3.446704e-49 | -8.615850e-47 |
| Msa0071090 | Msa1077070 | 0.806774 | 6.986051e-50 | -8.615850e-47 |
| Msa0071090 | Msa1098890 | 0.804108 | 2.530691e-49 | -8.615850e-47 |
| Msa0071090 | Msa1122150 | 0.813155 | 2.954095e-51 | -8.615850e-47 |
| Msa0071090 | Msa1122780 | 0.801736 | 7.821120e-49 | -8.615850e-47 |
| Msa0071090 | Msa1127430 | 0.819296 | 1.251488e-52 | -8.615850e-47 |
| Msa0071090 | Msa1161810 | 0.824903 | 6.272735e-54 | -8.615850e-47 |
| Msa0071090 | Msa1163870 | 0.813301 | 2.743796e-51 | -8.615850e-47 |
| Msa0071090 | Msa1183890 | 0.808561 | 2.914992e-50 | -8.615850e-47 |
| Msa0071090 | Msa1209190 | 0.822736 | 2.018941e-53 | -8.615850e-47 |
| Msa0071090 | Msa1211340 | 0.818648 | 1.756330e-52 | -8.615850e-47 |
| Msa0071090 | Msa1236110 | -0.814973 | 1.172612e-51 | -8.615850e-47 |
| Msa0071090 | Msa1259640 | 0.808325 | 3.274599e-50 | -8.615850e-47 |
| Msa0071090 | Msa1304810 | 0.821322 | 4.294022e-53 | -8.615850e-47 |
| Msa0071090 | Msa1329790 | 0.814200 | 1.739067e-51 | -8.615850e-47 |
| Msa0071090 | Msa1332050 | 0.806502 | 7.975267e-50 | -8.615850e-47 |
| Msa0071090 | Msa1336040 | 0.835136 | 2.000300e-56 | -8.615850e-47 |
| Msa0071090 | Msa1340200 | 0.809800 | 1.582235e-50 | -8.615850e-47 |
| Msa0071090 | Msa1359560 | 0.814667 | 1.370851e-51 | -8.615850e-47 |
| Msa0071090 | Msa1366550 | 0.810481 | 1.128441e-50 | -8.615850e-47 |
| Msa0071090 | Msa1368360 | 0.805507 | 1.291066e-49 | -8.615850e-47 |
| Msa0071090 | Msa1372240 | 0.811594 | 6.475083e-51 | -8.615850e-47 |
| Msa0071090 | Msa1377790 | 0.802725 | 4.895446e-49 | -8.615850e-47 |
| Msa0071090 | Msa1378410 | 0.834300 | 3.246883e-56 | -8.615850e-47 |
| Msa0071090 | Msa1391720 | 0.801108 | 1.052000e-48 | -8.615850e-47 |
| Msa0071090 | Msa1400120 | 0.807438 | 5.054975e-50 | -8.615850e-47 |
| Msa0071090 | Msa1401460 | 0.852782 | 3.682460e-61 | -8.615850e-47 |
| Msa0071090 | Msa1413380 | 0.819298 | 1.249835e-52 | -8.615850e-47 |
| Msa0071090 | Msa1419840 | 0.802681 | 4.999068e-49 | -8.615850e-47 |
| Msa0071090 | Msa1423540 | 0.800530 | 1.380497e-48 | -8.615850e-47 |
| Msa0071090 | Msa1426910 | 0.800406 | 1.462794e-48 | -8.615850e-47 |
| Msa0071090 | Msa1431170 | 0.812415 | 4.287817e-51 | -8.615850e-47 |
| Msa0071090 | Msa1437330 | 0.870121 | 1.853444e-66 | -8.615850e-47 |
| Msa0071090 | Msa1438520 | 0.821588 | 3.728263e-53 | -8.615850e-47 |
| Msa0071090 | Msa1450720 | 0.815044 | 1.131107e-51 | -8.615850e-47 |
| Msa0071090 | Msa1463030 | 0.817933 | 2.550153e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071090 | MtrunA17_Chr1g0176591 | 93.750 | 704 | 41 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071090 | AT5G26760.2 | 41.261 | 761 | 364 | 14 | 20 | 723 | 1 | 735 | 1.60e-172 | 512 |
| Msa0071090 | AT5G26760.1 | 48.571 | 350 | 170 | 4 | 376 | 723 | 89 | 430 | 7.40e-105 | 327 |
Find 152 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGAATTTCCATCATAAA+TGG | 0.132481 | 1_2:+42554368 | Msa0071090:three_prime_UTR |
| CTTTGTGCAGTGAAAGAATT+TGG | 0.146405 | 1_2:+42551694 | Msa0071090:CDS |
| TTGGAACCAATGGAAAATTT+TGG | 0.149339 | 1_2:+42550639 | Msa0071090:CDS |
| TCTTCTTTGGCATATATATA+TGG | 0.189186 | 1_2:+42552300 | Msa0071090:CDS |
| ATTCAATTGCTTGTTCAATT+AGG | 0.231043 | 1_2:-42551564 | None:intergenic |
| GAAGAATTTCTATCAGTTAA+TGG | 0.239586 | 1_2:+42552342 | Msa0071090:CDS |
| AACATTGGCAGAATTTAAAT+TGG | 0.247143 | 1_2:-42551530 | None:intergenic |
| GAATCATTGTCTCTTTGTTT+TGG | 0.252817 | 1_2:-42550780 | None:intergenic |
| AACAATGTTCTTAGGTTGTT+TGG | 0.256285 | 1_2:+42550606 | Msa0071090:CDS |
| AATGATTATAAAAGTTTAAT+TGG | 0.257744 | 1_2:+42551091 | Msa0071090:CDS |
| CCATATTGGAGAAGCCAAAA+AGG | 0.270922 | 1_2:+42551224 | Msa0071090:CDS |
| GCATCAGAAGCAGTTGCTTC+TGG | 0.271175 | 1_2:+42551820 | Msa0071090:CDS |
| GTGGATAACATCATCTTCTT+TGG | 0.277954 | 1_2:+42552287 | Msa0071090:CDS |
| CAAACAGCTGGTCTTCTCTT+TGG | 0.278459 | 1_2:-42550314 | None:intergenic |
| TCGGAAACTCCAGGTTTCTT+TGG | 0.282638 | 1_2:-42552060 | None:intergenic |
| AGAATTTGGAAACATTAAAA+AGG | 0.285942 | 1_2:+42551708 | Msa0071090:CDS |
| AAGTATCATATAGATAAAAT+TGG | 0.288959 | 1_2:-42554550 | None:intergenic |
| TTAGATTTAAGAGAAGATTT+TGG | 0.295505 | 1_2:-42551601 | None:intergenic |
| AGAAACTGAACAATGTTCTT+AGG | 0.303436 | 1_2:+42550598 | Msa0071090:CDS |
| GGCCACGGTGTACTTATAAT+TGG | 0.312064 | 1_2:-42554510 | None:intergenic |
| TGCCACTGCAGAGGTGTCTT+TGG | 0.317308 | 1_2:+42550716 | Msa0071090:CDS |
| AAGAATTTCTATCAGTTAAT+GGG | 0.321763 | 1_2:+42552343 | Msa0071090:CDS |
| GATGAGAAAATCAACAGTTC+TGG | 0.329888 | 1_2:+42551661 | Msa0071090:CDS |
| AACTCAGTCGCTCTGTTACT+TGG | 0.346040 | 1_2:+42551635 | Msa0071090:CDS |
| ACAAAGAGACAATGATTCTA+AGG | 0.351983 | 1_2:+42550785 | Msa0071090:CDS |
| TTGCAATTGGCCCTCCTTGA+TGG | 0.353204 | 1_2:+42550288 | Msa0071090:CDS |
| TCAACACTCCAATGCTTTGA+AGG | 0.354297 | 1_2:-42554460 | None:intergenic |
| TAACCCTCAATTGCATTTGA+TGG | 0.359086 | 1_2:-42550753 | None:intergenic |
| GTTCTGAGTGGTTCACAAAT+AGG | 0.360354 | 1_2:+42554260 | Msa0071090:CDS |
| GAAATAAAACAAACATTAGT+TGG | 0.365903 | 1_2:+42552411 | Msa0071090:CDS |
| CATTGCACCTCTCATCTTGC+AGG | 0.368177 | 1_2:-42550563 | None:intergenic |
| CGACTTGCCACGATTAGCTT+TGG | 0.375326 | 1_2:-42551068 | None:intergenic |
| ATCACATTCTCTTTCTGAAA+TGG | 0.377271 | 1_2:-42551422 | None:intergenic |
| ACATCAATTACCAGCATCAT+TGG | 0.377762 | 1_2:-42551854 | None:intergenic |
| AATTAAGCCGCCATCCATAT+TGG | 0.396147 | 1_2:+42551210 | Msa0071090:CDS |
| ACAGTCAAACTAAAACCTTC+TGG | 0.396644 | 1_2:-42552126 | None:intergenic |
| GAACTTAATCAAACACGTAT+AGG | 0.396804 | 1_2:+42554401 | Msa0071090:three_prime_UTR |
| CTTCTTTGGCATATATATAT+GGG | 0.399659 | 1_2:+42552301 | Msa0071090:CDS |
| TCCTCTGTCGCTAGGGGCCA+CGG | 0.401182 | 1_2:-42554525 | None:intergenic |
| AAAATTCAGTTACTCTGAAA+TGG | 0.402967 | 1_2:+42552037 | Msa0071090:CDS |
| AGAGTCAAACAAATCAAATT+CGG | 0.409918 | 1_2:-42552079 | None:intergenic |
| TTCTAGAAACTTGCTTCTGA+TGG | 0.413119 | 1_2:+42550224 | Msa0071090:CDS |
| CACTGTTTCATTCTGAATGC+TGG | 0.415973 | 1_2:-42553256 | None:intergenic |
| CTGCTGTTGTTGAAGAGCTC+AGG | 0.417817 | 1_2:+42552454 | Msa0071090:CDS |
| CGCTTGCTCTAATATATCTA+CGG | 0.420079 | 1_2:-42552487 | None:intergenic |
| ATTGAATTTCCATCATAAAT+GGG | 0.426414 | 1_2:+42554369 | Msa0071090:three_prime_UTR |
| TCTAATATATCTACGGGTAT+TGG | 0.431896 | 1_2:-42552480 | None:intergenic |
| TAGTGTTTCGAAAGTATCAT+TGG | 0.437175 | 1_2:+42551159 | Msa0071090:CDS |
| ATGCAAAATTGATATTCAAA+TGG | 0.438185 | 1_2:+42554597 | Msa0071090:three_prime_UTR |
| CAATAGAAAACACAATAACT+TGG | 0.448887 | 1_2:-42554628 | None:intergenic |
| TTTGCTGTTAATTACACAAC+CGG | 0.450833 | 1_2:-42550526 | None:intergenic |
| ATGAGAAAATCAACAGTTCT+GGG | 0.455398 | 1_2:+42551662 | Msa0071090:CDS |
| AGTGTTTCGAAAGTATCATT+GGG | 0.455834 | 1_2:+42551160 | Msa0071090:CDS |
| CTGAAATGGCCAAAGAAACC+TGG | 0.462966 | 1_2:+42552051 | Msa0071090:CDS |
| TAGATATCGGATTTCATTGA+AGG | 0.467664 | 1_2:+42550458 | Msa0071090:CDS |
| GAAGACCAGCTGTTTGCAGC+TGG | 0.470370 | 1_2:+42550321 | Msa0071090:CDS |
| TGATACTTTAATGCTGTTAG+TGG | 0.477402 | 1_2:+42554565 | Msa0071090:three_prime_UTR |
| AGTACTTTCCTCAACAGCAT+TGG | 0.477464 | 1_2:-42551989 | None:intergenic |
| TGTGAAAATGACAGTGGAAA+AGG | 0.478655 | 1_2:+42554730 | Msa0071090:three_prime_UTR |
| ATTGGATTCCTCTGTCGCTA+GGG | 0.478912 | 1_2:-42554532 | None:intergenic |
| AAGCAACTGCTTCTGATGCT+TGG | 0.479108 | 1_2:-42551816 | None:intergenic |
| AAATTTGAACTTGGAACCAA+TGG | 0.481401 | 1_2:+42550629 | Msa0071090:CDS |
| GTACTTTCCTCAACAGCATT+GGG | 0.483000 | 1_2:-42551988 | None:intergenic |
| GAACATTGTTCAGTTTCTCC+AGG | 0.487506 | 1_2:-42550593 | None:intergenic |
| TAGGAATTTCTCTTCAACAT+TGG | 0.487770 | 1_2:-42551545 | None:intergenic |
| ACTCAGTCGCTCTGTTACTT+GGG | 0.488356 | 1_2:+42551636 | Msa0071090:CDS |
| GGCAGAATTTAAATTGGAAG+TGG | 0.495798 | 1_2:-42551524 | None:intergenic |
| GCTGGATACAATGTCGTTTG+TGG | 0.496169 | 1_2:+42553225 | Msa0071090:CDS |
| CTTCTCTTTGGATACCATCA+AGG | 0.498483 | 1_2:-42550302 | None:intergenic |
| TGGACCATCAAATGCAATTG+AGG | 0.498530 | 1_2:+42550749 | Msa0071090:CDS |
| CATCAATTACCAGCATCATT+GGG | 0.503869 | 1_2:-42551853 | None:intergenic |
| TTTGGCTTCTCCAATATGGA+TGG | 0.512435 | 1_2:-42551220 | None:intergenic |
| GTGTCTTTGGAACAGTGGGC+TGG | 0.514994 | 1_2:+42550729 | Msa0071090:CDS |
| TGATGTTATCCACGAAAAGA+AGG | 0.516826 | 1_2:-42552277 | None:intergenic |
| AATTGGATTCCTCTGTCGCT+AGG | 0.517271 | 1_2:-42554533 | None:intergenic |
| CAGATCCAGCTGCAAACAGC+TGG | 0.520179 | 1_2:-42550326 | None:intergenic |
| GGGTTGGCAATAAAGTGGTC+AGG | 0.521721 | 1_2:+42551245 | Msa0071090:CDS |
| TTGGGGCAAACAGATACAAC+TGG | 0.522191 | 1_2:+42551178 | Msa0071090:CDS |
| ATGCTTTGAAGGTAAAAGAA+AGG | 0.523749 | 1_2:-42554449 | None:intergenic |
| AAGGATTTCGTTGTACCACT+TGG | 0.526604 | 1_2:+42554305 | Msa0071090:CDS |
| GACTCGGATCCCAATGATGC+TGG | 0.527843 | 1_2:+42551844 | Msa0071090:CDS |
| AGAGGTGTCTTTGGAACAGT+GGG | 0.528299 | 1_2:+42550725 | Msa0071090:CDS |
| AGCAGTTGCTTCTGGAGACT+CGG | 0.529316 | 1_2:+42551828 | Msa0071090:CDS |
| GTCCTCGGAAGGGTAGATAT+CGG | 0.529838 | 1_2:+42550445 | Msa0071090:CDS |
| GATACTTTAATGCTGTTAGT+GGG | 0.530504 | 1_2:+42554566 | Msa0071090:three_prime_UTR |
| GCTTGCTCTAATATATCTAC+GGG | 0.532496 | 1_2:-42552486 | None:intergenic |
| CCTCATTTCTCTTCTCAAAG+TGG | 0.532595 | 1_2:+42554335 | Msa0071090:CDS |
| ACATCCTCCCAATGCTGTTG+AGG | 0.537391 | 1_2:+42551981 | Msa0071090:CDS |
| AAATCAAATTCGGAAACTCC+AGG | 0.537463 | 1_2:-42552069 | None:intergenic |
| GCATTCCACATAGTAGCAAA+AGG | 0.537790 | 1_2:-42552255 | None:intergenic |
| CTTTGCCAACTGATCGTCCT+CGG | 0.538022 | 1_2:+42550430 | Msa0071090:CDS |
| TGCTTCTGATGCTTGGCTCA+AGG | 0.539836 | 1_2:-42551809 | None:intergenic |
| GTTGTTTGGAAATTTGAACT+TGG | 0.540609 | 1_2:+42550620 | Msa0071090:CDS |
| TCAACAGCATTGGGAGGATG+TGG | 0.540662 | 1_2:-42551979 | None:intergenic |
| GCCAACTGATCGTCCTCGGA+AGG | 0.542811 | 1_2:+42550434 | Msa0071090:CDS |
| AGCAAAATTGTCTTGACAGA+TGG | 0.547346 | 1_2:+42552378 | Msa0071090:CDS |
| AAGTTTCTAGAAATAGCATA+AGG | 0.550886 | 1_2:-42550213 | None:intergenic |
| CTGAGCTCTTCAACAACAGC+AGG | 0.551817 | 1_2:-42552453 | None:intergenic |
| CCCTTCCGAGGACGATCAGT+TGG | 0.553458 | 1_2:-42550435 | None:intergenic |
| GGCTTCTCCAATATGGATGG+CGG | 0.555808 | 1_2:-42551217 | None:intergenic |
| TCTTGTGCAGTATCGGAAGC+AGG | 0.557558 | 1_2:+42551943 | Msa0071090:intron |
| GGACCATCAAATGCAATTGA+GGG | 0.558886 | 1_2:+42550750 | Msa0071090:CDS |
| AAATCTTCTCTTAAATCTAA+CGG | 0.559728 | 1_2:+42551604 | Msa0071090:CDS |
| ATGAAGATGTTGTAACTGAA+AGG | 0.563773 | 1_2:+42550367 | Msa0071090:CDS |
| TGGTTTGATGCTCCACCAGA+AGG | 0.577882 | 1_2:+42552111 | Msa0071090:CDS |
| CAGGAGGGACTTGTTTCTCA+AGG | 0.580423 | 1_2:+42553354 | Msa0071090:CDS |
| TTATCTCATACATGACGGAC+AGG | 0.585032 | 1_2:+42553335 | Msa0071090:CDS |
| AGGTCCATCGCTAATTTGTG+TGG | 0.588401 | 1_2:+42550387 | Msa0071090:CDS |
| TTCAACAGAAGGATCATGAG+AGG | 0.591346 | 1_2:-42551377 | None:intergenic |
| CTTTGGCATATATATATGGG+AGG | 0.592014 | 1_2:+42552304 | Msa0071090:CDS |
| CAGAGGTGTCTTTGGAACAG+TGG | 0.592215 | 1_2:+42550724 | Msa0071090:CDS |
| CAGAACAGAATGATTCTGAA+AGG | 0.593966 | 1_2:+42551446 | Msa0071090:CDS |
| CTCATACATGACGGACAGGA+GGG | 0.594470 | 1_2:+42553339 | Msa0071090:CDS |
| AAGTACCTCAACAAAAGAGA+AGG | 0.595618 | 1_2:+42551321 | Msa0071090:CDS |
| AAAACATGTAAGTTTCGTGT+AGG | 0.601008 | 1_2:-42550497 | None:intergenic |
| CATCGATTAATACAAAATGT+CGG | 0.605502 | 1_2:-42554654 | None:intergenic |
| ACCGTGGCCCCTAGCGACAG+AGG | 0.607010 | 1_2:+42554524 | Msa0071090:three_prime_UTR |
| GAAATCGATACAACTCAAAG+AGG | 0.607557 | 1_2:+42551468 | Msa0071090:CDS |
| TTCCAAAGACACCTCTGCAG+TGG | 0.615979 | 1_2:-42550718 | None:intergenic |
| TTTGGCATATATATATGGGA+GGG | 0.616710 | 1_2:+42552305 | Msa0071090:CDS |
| GATTTCATTGAAGGAGCACA+AGG | 0.625957 | 1_2:+42550467 | Msa0071090:CDS |
| GTCAAACTAAAACCTTCTGG+TGG | 0.626841 | 1_2:-42552123 | None:intergenic |
| TCTCATACATGACGGACAGG+AGG | 0.627733 | 1_2:+42553338 | Msa0071090:CDS |
| TACTCTTATCTCATACATGA+CGG | 0.628188 | 1_2:+42553330 | Msa0071090:CDS |
| CTGGGAGCCTGCAAGATGAG+AGG | 0.628600 | 1_2:+42550556 | Msa0071090:CDS |
| AACAGAAACTGCCACTGCAG+AGG | 0.631088 | 1_2:+42550707 | Msa0071090:CDS |
| CAGAATGAAACAGTGGCAAG+TGG | 0.634857 | 1_2:+42553264 | Msa0071090:CDS |
| GGCAAAGCATTGCGGCACAA+TGG | 0.636176 | 1_2:-42550414 | None:intergenic |
| CCACTTTGAGAAGAGAAATG+AGG | 0.636699 | 1_2:-42554335 | None:intergenic |
| GAGTGGTTCACAAATAGGCA+AGG | 0.636728 | 1_2:+42554265 | Msa0071090:CDS |
| CTCTTTGGATACCATCAAGG+AGG | 0.637806 | 1_2:-42550299 | None:intergenic |
| TTTCTGAAATGGTAATCGAG+TGG | 0.640137 | 1_2:-42551411 | None:intergenic |
| CCAACTGATCGTCCTCGGAA+GGG | 0.642742 | 1_2:+42550435 | Msa0071090:CDS |
| GGTCCATCGCTAATTTGTGT+GGG | 0.648300 | 1_2:+42550388 | Msa0071090:CDS |
| ATACCCACACAAATTAGCGA+TGG | 0.649576 | 1_2:-42550391 | None:intergenic |
| TTGGATTCCTCTGTCGCTAG+GGG | 0.650829 | 1_2:-42554531 | None:intergenic |
| CTTTCCTCAACAGCATTGGG+AGG | 0.652955 | 1_2:-42551985 | None:intergenic |
| TCTTTGGATACCATCAAGGA+GGG | 0.655363 | 1_2:-42550298 | None:intergenic |
| GTCATGTATGAGATAAGAGT+AGG | 0.656182 | 1_2:-42553328 | None:intergenic |
| AAATGAGGTGCTCGACCAAG+TGG | 0.656919 | 1_2:-42554320 | None:intergenic |
| GATCAGTTGGCAAAGCATTG+CGG | 0.658842 | 1_2:-42550422 | None:intergenic |
| AGATATATTAGAGCAAGCGA+TGG | 0.661113 | 1_2:+42552491 | Msa0071090:CDS |
| TGTTTGACTCTGAAGACACG+TGG | 0.666494 | 1_2:+42552091 | Msa0071090:CDS |
| ATCCGATATCTACCCTTCCG+AGG | 0.667151 | 1_2:-42550447 | None:intergenic |
| TTGGTGAAGCAGGTTCTGAG+TGG | 0.679031 | 1_2:+42554248 | Msa0071090:intron |
| GTGTTTCGAAAGTATCATTG+GGG | 0.679627 | 1_2:+42551161 | Msa0071090:CDS |
| GCTGTTAATTACACAACCGG+AGG | 0.683543 | 1_2:-42550523 | None:intergenic |
| GCAGGGTCCAAAGCTAATCG+TGG | 0.689841 | 1_2:+42551061 | Msa0071090:intron |
| CAGCATTCAGAATGAAACAG+TGG | 0.697410 | 1_2:+42553257 | Msa0071090:CDS |
| GGCATATGTGAAAATGACAG+TGG | 0.700784 | 1_2:+42554724 | Msa0071090:three_prime_UTR |
| TGCTGTTGAGGAAAGTACTG+TGG | 0.706731 | 1_2:+42551993 | Msa0071090:CDS |
| ATCCAATTATAAGTACACCG+TGG | 0.818278 | 1_2:+42554508 | Msa0071090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTATAAAAGTTTAAT+TGG | + | chr1_2:42551091-42551110 | Msa0071090:CDS | 10.0% |
| !!! | TATTATTTTACTCTATAATT+TGG | + | chr1_2:42553889-42553908 | Msa0071090:intron | 10.0% |
| !! | AGGATTTCAAAAAATTATAT+TGG | - | chr1_2:42550853-42550872 | None:intergenic | 15.0% |
| !! | ATTAAATATTTATTACACTC+TGG | + | chr1_2:42552561-42552580 | Msa0071090:intron | 15.0% |
| !!! | TAAAACATTGCTTTATTAAT+TGG | + | chr1_2:42552852-42552871 | Msa0071090:intron | 15.0% |
| !!! | AAACATTATAAATTTTCGAA+TGG | + | chr1_2:42552895-42552914 | Msa0071090:intron | 15.0% |
| !!! | TTTCTAAATTTTGAAAAAGA+AGG | - | chr1_2:42553058-42553077 | None:intergenic | 15.0% |
| !! | TACTAGCAAATAAAATAATA+AGG | - | chr1_2:42553618-42553637 | None:intergenic | 15.0% |
| !!! | TATTTTATTTGCTAGTATTT+TGG | + | chr1_2:42553621-42553640 | Msa0071090:intron | 15.0% |
| !! | AAAACTGAAAATAATAAGAT+AGG | - | chr1_2:42554157-42554176 | None:intergenic | 15.0% |
| !! | AAGTATCATATAGATAAAAT+TGG | - | chr1_2:42554553-42554572 | None:intergenic | 15.0% |
| !! | TCTAAGAAAAATGCTAAAAA+AGG | + | chr1_2:42550810-42550829 | Msa0071090:CDS | 20.0% |
| !! | ATACTATAATTGTAAAGTTG+AGG | + | chr1_2:42550962-42550981 | Msa0071090:intron | 20.0% |
| !!! | TTAGATTTAAGAGAAGATTT+TGG | - | chr1_2:42551604-42551623 | None:intergenic | 20.0% |
| !! | AAATCTTCTCTTAAATCTAA+CGG | + | chr1_2:42551604-42551623 | Msa0071090:CDS | 20.0% |
| !! | AGAATTTGGAAACATTAAAA+AGG | + | chr1_2:42551708-42551727 | Msa0071090:CDS | 20.0% |
| !! | AAGAATTTCTATCAGTTAAT+GGG | + | chr1_2:42552343-42552362 | Msa0071090:CDS | 20.0% |
| !! | GAAATAAAACAAACATTAGT+TGG | + | chr1_2:42552411-42552430 | Msa0071090:CDS | 20.0% |
| !!! | TAATGACTTAGTTTAAAACA+AGG | - | chr1_2:42552545-42552564 | None:intergenic | 20.0% |
| !! | TAGAAATTTCCAAAAAATCA+TGG | + | chr1_2:42553072-42553091 | Msa0071090:intron | 20.0% |
| !! | AGAAATTTCCAAAAAATCAT+GGG | + | chr1_2:42553073-42553092 | Msa0071090:intron | 20.0% |
| !!! | TATCCATTTTTGTTTATATG+AGG | + | chr1_2:42553166-42553185 | Msa0071090:intron | 20.0% |
| !! | ATCAGAACAATATAAACAAA+TGG | - | chr1_2:42553385-42553404 | None:intergenic | 20.0% |
| !! | ATCAGAACAATATAAACAAA+CGG | - | chr1_2:42553385-42553404 | None:intergenic | 20.0% |
| !!! | TTATTTTACCCACATTAATA+TGG | + | chr1_2:42553513-42553532 | Msa0071090:intron | 20.0% |
| !!! | AAGCATTTTATAATGATATC+AGG | + | chr1_2:42553559-42553578 | Msa0071090:intron | 20.0% |
| !! | AATAAGGATTAAATGTTTGT+CGG | - | chr1_2:42553602-42553621 | None:intergenic | 20.0% |
| !!! | CATTTAGAATAAACAAACAA+AGG | - | chr1_2:42553672-42553691 | None:intergenic | 20.0% |
| !! | CACTAACAAATGTAATAATA+GGG | - | chr1_2:42553784-42553803 | None:intergenic | 20.0% |
| !! | ACACTAACAAATGTAATAAT+AGG | - | chr1_2:42553785-42553804 | None:intergenic | 20.0% |
| !!! | TATTACATTTGTTAGTGTTT+TGG | + | chr1_2:42553787-42553806 | Msa0071090:intron | 20.0% |
| !!! | TTTTATTTTGTTAAGTTTGG+AGG | - | chr1_2:42553838-42553857 | None:intergenic | 20.0% |
| !!! | GGATTTTATTTTGTTAAGTT+TGG | - | chr1_2:42553841-42553860 | None:intergenic | 20.0% |
| !! | AGTAAAATAATATCTAAGCA+TGG | - | chr1_2:42553881-42553900 | None:intergenic | 20.0% |
| !!! | ATAATTTGGTTTATCTAATG+TGG | + | chr1_2:42553903-42553922 | Msa0071090:intron | 20.0% |
| !! | CAATTACAATTTACAACTAT+TGG | - | chr1_2:42553933-42553952 | None:intergenic | 20.0% |
| !!! | GCAAGTAAATTTTATTCATA+TGG | - | chr1_2:42554010-42554029 | None:intergenic | 20.0% |
| !! | ATTGAATTTCCATCATAAAT+GGG | + | chr1_2:42554369-42554388 | Msa0071090:three_prime_UTR | 20.0% |
| !! | ATGCAAAATTGATATTCAAA+TGG | + | chr1_2:42554597-42554616 | Msa0071090:three_prime_UTR | 20.0% |
| !! | AAGTTTCTAGAAATAGCATA+AGG | - | chr1_2:42550216-42550235 | None:intergenic | 25.0% |
| ! | AACATTGGCAGAATTTAAAT+TGG | - | chr1_2:42551533-42551552 | None:intergenic | 25.0% |
| ! | ATTCAATTGCTTGTTCAATT+AGG | - | chr1_2:42551567-42551586 | None:intergenic | 25.0% |
| !! | AAAATTCAGTTACTCTGAAA+TGG | + | chr1_2:42552037-42552056 | Msa0071090:CDS | 25.0% |
| ! | AGAGTCAAACAAATCAAATT+CGG | - | chr1_2:42552082-42552101 | None:intergenic | 25.0% |
| ! | TCTTCTTTGGCATATATATA+TGG | + | chr1_2:42552300-42552319 | Msa0071090:CDS | 25.0% |
| ! | CTTCTTTGGCATATATATAT+GGG | + | chr1_2:42552301-42552320 | Msa0071090:CDS | 25.0% |
| ! | GAAGAATTTCTATCAGTTAA+TGG | + | chr1_2:42552342-42552361 | Msa0071090:CDS | 25.0% |
| ! | AATATTTATTACACTCTGGT+AGG | + | chr1_2:42552565-42552584 | Msa0071090:intron | 25.0% |
| ! | ATGCTAAAATTGATGAAACT+TGG | - | chr1_2:42552783-42552802 | None:intergenic | 25.0% |
| !!! | CAATTTTAGCATATGTGAAA+AGG | + | chr1_2:42552791-42552810 | Msa0071090:intron | 25.0% |
| ! | GAGTATAAGAAACAAAGAAA+TGG | - | chr1_2:42553015-42553034 | None:intergenic | 25.0% |
| !! | TTTCTTTGTTTCTTATACTC+TGG | + | chr1_2:42553015-42553034 | Msa0071090:intron | 25.0% |
| !! | TTTCTTATACTCTGGTTTAT+AGG | + | chr1_2:42553023-42553042 | Msa0071090:intron | 25.0% |
| ! | CATCCTCATATAAACAAAAA+TGG | - | chr1_2:42553172-42553191 | None:intergenic | 25.0% |
| !!! | TTATTTTACCCACATTACTA+TGG | + | chr1_2:42553408-42553427 | Msa0071090:intron | 25.0% |
| !!! | AAGCATTTGATAATGATATC+AGG | + | chr1_2:42553454-42553473 | Msa0071090:intron | 25.0% |
| !!! | TTTGATAATGATATCAGGTA+AGG | + | chr1_2:42553459-42553478 | Msa0071090:intron | 25.0% |
| ! | ATAAGGATTAAATGTTTGTC+GGG | - | chr1_2:42553601-42553620 | None:intergenic | 25.0% |
| !! | TTCTATCATTAAGAAAGCAT+GGG | - | chr1_2:42553728-42553747 | None:intergenic | 25.0% |
| ! | TGTAAATTGTAATTGCTATG+CGG | + | chr1_2:42553938-42553957 | Msa0071090:intron | 25.0% |
| !!! | TAATTTGTTAACCATTGTTC+TGG | + | chr1_2:42554218-42554237 | Msa0071090:intron | 25.0% |
| ! | CATTGAATTTCCATCATAAA+TGG | + | chr1_2:42554368-42554387 | Msa0071090:three_prime_UTR | 25.0% |
| ! | CAATAGAAAACACAATAACT+TGG | - | chr1_2:42554631-42554650 | None:intergenic | 25.0% |
| !! | CATCGATTAATACAAAATGT+CGG | - | chr1_2:42554657-42554676 | None:intergenic | 25.0% |
| !!! | TGCTGTTTTGAAATTGCAAT+TGG | + | chr1_2:42550275-42550294 | Msa0071090:CDS | 30.0% |
| ATGAAGATGTTGTAACTGAA+AGG | + | chr1_2:42550367-42550386 | Msa0071090:CDS | 30.0% | |
| TAGATATCGGATTTCATTGA+AGG | + | chr1_2:42550458-42550477 | Msa0071090:CDS | 30.0% | |
| AAAACATGTAAGTTTCGTGT+AGG | - | chr1_2:42550500-42550519 | None:intergenic | 30.0% | |
| !! | TTTGCTGTTAATTACACAAC+CGG | - | chr1_2:42550529-42550548 | None:intergenic | 30.0% |
| AGAAACTGAACAATGTTCTT+AGG | + | chr1_2:42550598-42550617 | Msa0071090:CDS | 30.0% | |
| ! | AACAATGTTCTTAGGTTGTT+TGG | + | chr1_2:42550606-42550625 | Msa0071090:CDS | 30.0% |
| GTTGTTTGGAAATTTGAACT+TGG | + | chr1_2:42550620-42550639 | Msa0071090:CDS | 30.0% | |
| AAATTTGAACTTGGAACCAA+TGG | + | chr1_2:42550629-42550648 | Msa0071090:CDS | 30.0% | |
| ! | TTGGAACCAATGGAAAATTT+TGG | + | chr1_2:42550639-42550658 | Msa0071090:CDS | 30.0% |
| !! | ACCAATGGAAAATTTTGGAA+AGG | + | chr1_2:42550644-42550663 | Msa0071090:CDS | 30.0% |
| ! | TCCTTTCCAAAATTTTCCAT+TGG | - | chr1_2:42550648-42550667 | None:intergenic | 30.0% |
| !! | ATGGAAAATTTTGGAAAGGA+TGG | + | chr1_2:42550648-42550667 | Msa0071090:CDS | 30.0% |
| !! | TTTTTCTGACTTGAAAATCC+AGG | + | chr1_2:42550680-42550699 | Msa0071090:CDS | 30.0% |
| !! | GAATCATTGTCTCTTTGTTT+TGG | - | chr1_2:42550783-42550802 | None:intergenic | 30.0% |
| ACAAAGAGACAATGATTCTA+AGG | + | chr1_2:42550785-42550804 | Msa0071090:CDS | 30.0% | |
| ATAAGGCTATCTAATAGTCT+AGG | - | chr1_2:42550873-42550892 | None:intergenic | 30.0% | |
| TTTGAGCAAAAAATGGCATA+AGG | - | chr1_2:42550890-42550909 | None:intergenic | 30.0% | |
| ! | AGACACTTTTGAGCAAAAAA+TGG | - | chr1_2:42550897-42550916 | None:intergenic | 30.0% |
| !!! | TGTATTCTTTGTTTTCCTGA+TGG | + | chr1_2:42550928-42550947 | Msa0071090:intron | 30.0% |
| !!! | GTATTCTTTGTTTTCCTGAT+GGG | + | chr1_2:42550929-42550948 | Msa0071090:intron | 30.0% |
| GTATATTAAAATCACCCATC+AGG | - | chr1_2:42550946-42550965 | None:intergenic | 30.0% | |
| TATTCCATTTCTCAGAACTT+AGG | - | chr1_2:42550989-42551008 | None:intergenic | 30.0% | |
| !! | TAGTGTTTCGAAAGTATCAT+TGG | + | chr1_2:42551159-42551178 | Msa0071090:CDS | 30.0% |
| !! | AGTGTTTCGAAAGTATCATT+GGG | + | chr1_2:42551160-42551179 | Msa0071090:CDS | 30.0% |
| ! | TATTTCCTTCTCTTTTGTTG+AGG | - | chr1_2:42551329-42551348 | None:intergenic | 30.0% |
| ! | ACAACTTTCTTTTCAACAGA+AGG | - | chr1_2:42551391-42551410 | None:intergenic | 30.0% |
| ! | ATCACATTCTCTTTCTGAAA+TGG | - | chr1_2:42551425-42551444 | None:intergenic | 30.0% |
| TAGGAATTTCTCTTCAACAT+TGG | - | chr1_2:42551548-42551567 | None:intergenic | 30.0% | |
| !!! | GAGAAGATTTTGGTTTAGTA+TGG | - | chr1_2:42551594-42551613 | None:intergenic | 30.0% |
| ATGAGAAAATCAACAGTTCT+GGG | + | chr1_2:42551662-42551681 | Msa0071090:CDS | 30.0% | |
| GGTAATTGATGTTTCTTTAG+AGG | + | chr1_2:42551865-42551884 | Msa0071090:intron | 30.0% | |
| TTTGGCATATATATATGGGA+GGG | + | chr1_2:42552305-42552324 | Msa0071090:CDS | 30.0% | |
| TCTAATATATCTACGGGTAT+TGG | - | chr1_2:42552483-42552502 | None:intergenic | 30.0% | |
| !!! | TTCCTTATTTTGTGTATGAG+TGG | - | chr1_2:42552670-42552689 | None:intergenic | 30.0% |
| ATAAGGAATCAACAAAACTG+TGG | + | chr1_2:42552682-42552701 | Msa0071090:intron | 30.0% | |
| AATCAACAAAACTGTGGAAA+AGG | + | chr1_2:42552688-42552707 | Msa0071090:intron | 30.0% | |
| TCCAAAAAATCATGGGTTTA+AGG | + | chr1_2:42553080-42553099 | Msa0071090:intron | 30.0% | |
| ! | TAAGTGCACAACTTTCTTTT+AGG | + | chr1_2:42553195-42553214 | Msa0071090:intron | 30.0% |
| TACTCTTATCTCATACATGA+CGG | + | chr1_2:42553330-42553349 | Msa0071090:CDS | 30.0% | |
| GATTGCTACCATATTAATGT+GGG | - | chr1_2:42553524-42553543 | None:intergenic | 30.0% | |
| AGATTGCTACCATATTAATG+TGG | - | chr1_2:42553525-42553544 | None:intergenic | 30.0% | |
| GAATAAACAAACAAAGGTGA+AGG | - | chr1_2:42553666-42553685 | None:intergenic | 30.0% | |
| ! | TCTATCATTAAGAAAGCATG+GGG | - | chr1_2:42553727-42553746 | None:intergenic | 30.0% |
| CTTCTATCATTAAGAAAGCA+TGG | - | chr1_2:42553729-42553748 | None:intergenic | 30.0% | |
| CATGCTTTCTTAATGATAGA+AGG | + | chr1_2:42553727-42553746 | Msa0071090:intron | 30.0% | |
| ATCATTCCCAAGAAATACAT+AGG | - | chr1_2:42554080-42554099 | None:intergenic | 30.0% | |
| TCTTGGGAATGATGTTAATA+TGG | + | chr1_2:42554087-42554106 | Msa0071090:intron | 30.0% | |
| CTTGGGAATGATGTTAATAT+GGG | + | chr1_2:42554088-42554107 | Msa0071090:intron | 30.0% | |
| !! | TTAATATGGGCACTTGTTTT+GGG | + | chr1_2:42554101-42554120 | Msa0071090:intron | 30.0% |
| GAAATGATGTATGTAAACTG+AGG | + | chr1_2:42554126-42554145 | Msa0071090:intron | 30.0% | |
| GAACTTAATCAAACACGTAT+AGG | + | chr1_2:42554401-42554420 | Msa0071090:three_prime_UTR | 30.0% | |
| !! | ATGCTTTGAAGGTAAAAGAA+AGG | - | chr1_2:42554452-42554471 | None:intergenic | 30.0% |
| ! | TTCTTTTACCTTCAAAGCAT+TGG | + | chr1_2:42554452-42554471 | Msa0071090:three_prime_UTR | 30.0% |
| TGATACTTTAATGCTGTTAG+TGG | + | chr1_2:42554565-42554584 | Msa0071090:three_prime_UTR | 30.0% | |
| GATACTTTAATGCTGTTAGT+GGG | + | chr1_2:42554566-42554585 | Msa0071090:three_prime_UTR | 30.0% | |
| ! | CGACATTTTGTATTAATCGA+TGG | + | chr1_2:42554655-42554674 | Msa0071090:three_prime_UTR | 30.0% |
| ! | GATGTCTTTTACATAGCATT+TGG | + | chr1_2:42554703-42554722 | Msa0071090:three_prime_UTR | 30.0% |
| !! | AGTGGAAAAGGTCTATTTTT+GGG | + | chr1_2:42554742-42554761 | Msa0071090:three_prime_UTR | 30.0% |
| ! | TTCTAGAAACTTGCTTCTGA+TGG | + | chr1_2:42550224-42550243 | Msa0071090:CDS | 35.0% |
| CATCTTTGACAAAAACAAGC+TGG | - | chr1_2:42550257-42550276 | None:intergenic | 35.0% | |
| !! | ACTTACATGTTTTGTTCCTC+CGG | + | chr1_2:42550507-42550526 | Msa0071090:CDS | 35.0% |
| ! | ATTAACAGCAAAGCTTTTGC+TGG | + | chr1_2:42550537-42550556 | Msa0071090:CDS | 35.0% |
| ! | TTAACAGCAAAGCTTTTGCT+GGG | + | chr1_2:42550538-42550557 | Msa0071090:CDS | 35.0% |
| TAACCCTCAATTGCATTTGA+TGG | - | chr1_2:42550756-42550775 | None:intergenic | 35.0% | |
| !! | GTGTTTCGAAAGTATCATTG+GGG | + | chr1_2:42551161-42551180 | Msa0071090:CDS | 35.0% |
| CATATTGGAGAAGCCAAAAA+GGG | + | chr1_2:42551225-42551244 | Msa0071090:CDS | 35.0% | |
| ! | ACTTTATTGCCAACCCTTTT+TGG | - | chr1_2:42551241-42551260 | None:intergenic | 35.0% |
| ! | AAAAAGGGTTGGCAATAAAG+TGG | + | chr1_2:42551240-42551259 | Msa0071090:CDS | 35.0% |
| AAGTACCTCAACAAAAGAGA+AGG | + | chr1_2:42551321-42551340 | Msa0071090:CDS | 35.0% | |
| !! | TTTCTGAAATGGTAATCGAG+TGG | - | chr1_2:42551414-42551433 | None:intergenic | 35.0% |
| CAGAACAGAATGATTCTGAA+AGG | + | chr1_2:42551446-42551465 | Msa0071090:CDS | 35.0% | |
| GAAATCGATACAACTCAAAG+AGG | + | chr1_2:42551468-42551487 | Msa0071090:CDS | 35.0% | |
| GGCAGAATTTAAATTGGAAG+TGG | - | chr1_2:42551527-42551546 | None:intergenic | 35.0% | |
| GATGAGAAAATCAACAGTTC+TGG | + | chr1_2:42551661-42551680 | Msa0071090:CDS | 35.0% | |
| CTTTGTGCAGTGAAAGAATT+TGG | + | chr1_2:42551694-42551713 | Msa0071090:CDS | 35.0% | |
| GGAAACATTAAAAAGGAGTC+TGG | + | chr1_2:42551715-42551734 | Msa0071090:CDS | 35.0% | |
| CATCAATTACCAGCATCATT+GGG | - | chr1_2:42551856-42551875 | None:intergenic | 35.0% | |
| ACATCAATTACCAGCATCAT+TGG | - | chr1_2:42551857-42551876 | None:intergenic | 35.0% | |
| AAATCAAATTCGGAAACTCC+AGG | - | chr1_2:42552072-42552091 | None:intergenic | 35.0% | |
| ACAGTCAAACTAAAACCTTC+TGG | - | chr1_2:42552129-42552148 | None:intergenic | 35.0% | |
| TGATGTTATCCACGAAAAGA+AGG | - | chr1_2:42552280-42552299 | None:intergenic | 35.0% | |
| GTGGATAACATCATCTTCTT+TGG | + | chr1_2:42552287-42552306 | Msa0071090:CDS | 35.0% | |
| CTTTGGCATATATATATGGG+AGG | + | chr1_2:42552304-42552323 | Msa0071090:CDS | 35.0% | |
| ! | TCTGTCAAGACAATTTTGCT+AGG | - | chr1_2:42552378-42552397 | None:intergenic | 35.0% |
| AGCAAAATTGTCTTGACAGA+TGG | + | chr1_2:42552378-42552397 | Msa0071090:CDS | 35.0% | |
| GCTTGCTCTAATATATCTAC+GGG | - | chr1_2:42552489-42552508 | None:intergenic | 35.0% | |
| CGCTTGCTCTAATATATCTA+CGG | - | chr1_2:42552490-42552509 | None:intergenic | 35.0% | |
| AGATATATTAGAGCAAGCGA+TGG | + | chr1_2:42552491-42552510 | Msa0071090:CDS | 35.0% | |
| !!! | CTCTTCATTTTTTTGGAGAG+GGG | - | chr1_2:42552647-42552666 | None:intergenic | 35.0% |
| !!! | GCTCTTCATTTTTTTGGAGA+GGG | - | chr1_2:42552648-42552667 | None:intergenic | 35.0% |
| !!! | TGAGTGGCTCTTCATTTTTT+TGG | - | chr1_2:42552654-42552673 | None:intergenic | 35.0% |
| AGCCACTCATACACAAAATA+AGG | + | chr1_2:42552665-42552684 | Msa0071090:intron | 35.0% | |
| CAACAAAGAGAATGTGCTAT+AGG | - | chr1_2:42552729-42552748 | None:intergenic | 35.0% | |
| CTATAGCACATTCTCTTTGT+TGG | + | chr1_2:42552727-42552746 | Msa0071090:intron | 35.0% | |
| TAGCATATGTGAAAAGGAAC+TGG | + | chr1_2:42552797-42552816 | Msa0071090:intron | 35.0% | |
| ! | TGAAAAGGAACTGGTTTAGA+TGG | + | chr1_2:42552806-42552825 | Msa0071090:intron | 35.0% |
| ! | TGACTAGTTATGCACAATGT+TGG | + | chr1_2:42552918-42552937 | Msa0071090:intron | 35.0% |
| ! | ATACTCTGGTTTATAGGACA+AGG | + | chr1_2:42553029-42553048 | Msa0071090:intron | 35.0% |
| !!! | GCCTTAAACCCATGATTTTT+TGG | - | chr1_2:42553084-42553103 | None:intergenic | 35.0% |
| GTCATGTATGAGATAAGAGT+AGG | - | chr1_2:42553331-42553350 | None:intergenic | 35.0% | |
| GATTGCTACCATAGTAATGT+GGG | - | chr1_2:42553419-42553438 | None:intergenic | 35.0% | |
| AGATTGCTACCATAGTAATG+TGG | - | chr1_2:42553420-42553439 | None:intergenic | 35.0% | |
| CTTAATGATAGAAGGTTGCA+TGG | + | chr1_2:42553735-42553754 | Msa0071090:intron | 35.0% | |
| TTTGTTAAGTTTGGAGGTGA+AGG | - | chr1_2:42553832-42553851 | None:intergenic | 35.0% | |
| !!! | GCGGATTTTTAGTTAAAGTG+AGG | + | chr1_2:42553957-42553976 | Msa0071090:intron | 35.0% |
| TTCCCAAGAAATACATAGGT+GGG | - | chr1_2:42554076-42554095 | None:intergenic | 35.0% | |
| ATTCCCAAGAAATACATAGG+TGG | - | chr1_2:42554077-42554096 | None:intergenic | 35.0% | |
| ! | GTTAATATGGGCACTTGTTT+TGG | + | chr1_2:42554100-42554119 | Msa0071090:intron | 35.0% |
| ! | AAGCTTTTGCCCATTTATGA+TGG | - | chr1_2:42554381-42554400 | None:intergenic | 35.0% |
| ATCCAATTATAAGTACACCG+TGG | + | chr1_2:42554508-42554527 | Msa0071090:three_prime_UTR | 35.0% | |
| TGTGAAAATGACAGTGGAAA+AGG | + | chr1_2:42554730-42554749 | Msa0071090:three_prime_UTR | 35.0% | |
| ! | CAGTGGAAAAGGTCTATTTT+TGG | + | chr1_2:42554741-42554760 | Msa0071090:three_prime_UTR | 35.0% |
| !!! | GTGGAAAAGGTCTATTTTTG+GGG | + | chr1_2:42554743-42554762 | Msa0071090:three_prime_UTR | 35.0% |
| TCTTTGGATACCATCAAGGA+GGG | - | chr1_2:42550301-42550320 | None:intergenic | 40.0% | |
| CTTCTCTTTGGATACCATCA+AGG | - | chr1_2:42550305-42550324 | None:intergenic | 40.0% | |
| ATACCCACACAAATTAGCGA+TGG | - | chr1_2:42550394-42550413 | None:intergenic | 40.0% | |
| ! | GATTTCATTGAAGGAGCACA+AGG | + | chr1_2:42550467-42550486 | Msa0071090:CDS | 40.0% |
| GAACATTGTTCAGTTTCTCC+AGG | - | chr1_2:42550596-42550615 | None:intergenic | 40.0% | |
| ! | TGGCAGTTTCTGTTTTATCC+TGG | - | chr1_2:42550701-42550720 | None:intergenic | 40.0% |
| TGGACCATCAAATGCAATTG+AGG | + | chr1_2:42550749-42550768 | Msa0071090:CDS | 40.0% | |
| GGACCATCAAATGCAATTGA+GGG | + | chr1_2:42550750-42550769 | Msa0071090:CDS | 40.0% | |
| !! | AGGACCTAAGTTCTGAGAAA+TGG | + | chr1_2:42550982-42551001 | Msa0071090:intron | 40.0% |
| AATTAAGCCGCCATCCATAT+TGG | + | chr1_2:42551210-42551229 | Msa0071090:CDS | 40.0% | |
| ! | TTTGGCTTCTCCAATATGGA+TGG | - | chr1_2:42551223-42551242 | None:intergenic | 40.0% |
| !!! | CCTTTTTGGCTTCTCCAATA+TGG | - | chr1_2:42551227-42551246 | None:intergenic | 40.0% |
| CCATATTGGAGAAGCCAAAA+AGG | + | chr1_2:42551224-42551243 | Msa0071090:CDS | 40.0% | |
| TTCAACAGAAGGATCATGAG+AGG | - | chr1_2:42551380-42551399 | None:intergenic | 40.0% | |
| CATTAAAAAGGAGTCTGGTG+TGG | + | chr1_2:42551720-42551739 | Msa0071090:CDS | 40.0% | |
| CAATGCATCTTGTGCAGTAT+CGG | + | chr1_2:42551936-42551955 | Msa0071090:intron | 40.0% | |
| GTACTTTCCTCAACAGCATT+GGG | - | chr1_2:42551991-42552010 | None:intergenic | 40.0% | |
| AGTACTTTCCTCAACAGCAT+TGG | - | chr1_2:42551992-42552011 | None:intergenic | 40.0% | |
| GTCAAACTAAAACCTTCTGG+TGG | - | chr1_2:42552126-42552145 | None:intergenic | 40.0% | |
| GTGACAACTGGAAGAAAGTT+CGG | - | chr1_2:42552236-42552255 | None:intergenic | 40.0% | |
| TAGTAGCAAAAGGTGACAAC+TGG | - | chr1_2:42552248-42552267 | None:intergenic | 40.0% | |
| ! | TGTCACCTTTTGCTACTATG+TGG | + | chr1_2:42552250-42552269 | Msa0071090:CDS | 40.0% |
| GCATTCCACATAGTAGCAAA+AGG | - | chr1_2:42552258-42552277 | None:intergenic | 40.0% | |
| GAGGGGTCACAAACATAATA+GGG | - | chr1_2:42552630-42552649 | None:intergenic | 40.0% | |
| AGAGGGGTCACAAACATAAT+AGG | - | chr1_2:42552631-42552650 | None:intergenic | 40.0% | |
| !!! | GGCTCTTCATTTTTTTGGAG+AGG | - | chr1_2:42552649-42552668 | None:intergenic | 40.0% |
| AATGGTTGCCAATGTGGTAT+GGG | - | chr1_2:42552997-42553016 | None:intergenic | 40.0% | |
| AAATGGTTGCCAATGTGGTA+TGG | - | chr1_2:42552998-42553017 | None:intergenic | 40.0% | |
| CAAAGAAATGGTTGCCAATG+TGG | - | chr1_2:42553003-42553022 | None:intergenic | 40.0% | |
| !! | TTTCTTTTAGGTACGCTTGC+TGG | + | chr1_2:42553207-42553226 | Msa0071090:intron | 40.0% |
| CACTGTTTCATTCTGAATGC+TGG | - | chr1_2:42553259-42553278 | None:intergenic | 40.0% | |
| CAGCATTCAGAATGAAACAG+TGG | + | chr1_2:42553257-42553276 | Msa0071090:CDS | 40.0% | |
| !! | TTATCTCATACATGACGGAC+AGG | + | chr1_2:42553335-42553354 | Msa0071090:CDS | 40.0% |
| ATGGTGCAGCTAAGTTATGT+GGG | - | chr1_2:42553862-42553881 | None:intergenic | 40.0% | |
| AAATACATAGGTGGGGAAAG+TGG | - | chr1_2:42554068-42554087 | None:intergenic | 40.0% | |
| TTCCCCACCTATGTATTTCT+TGG | + | chr1_2:42554070-42554089 | Msa0071090:intron | 40.0% | |
| TCCCCACCTATGTATTTCTT+GGG | + | chr1_2:42554071-42554090 | Msa0071090:intron | 40.0% | |
| TCCCAAGAAATACATAGGTG+GGG | - | chr1_2:42554075-42554094 | None:intergenic | 40.0% | |
| GTTAACCATTGTTCTGGTGT+TGG | + | chr1_2:42554224-42554243 | Msa0071090:intron | 40.0% | |
| ! | GTTCTGAGTGGTTCACAAAT+AGG | + | chr1_2:42554260-42554279 | Msa0071090:CDS | 40.0% |
| !! | GGAAGAGTATGACGTTTTGA+AGG | + | chr1_2:42554286-42554305 | Msa0071090:CDS | 40.0% |
| AAGGATTTCGTTGTACCACT+TGG | + | chr1_2:42554305-42554324 | Msa0071090:CDS | 40.0% | |
| ! | CCACTTTGAGAAGAGAAATG+AGG | - | chr1_2:42554338-42554357 | None:intergenic | 40.0% |
| CCTCATTTCTCTTCTCAAAG+TGG | + | chr1_2:42554335-42554354 | Msa0071090:CDS | 40.0% | |
| TCAACACTCCAATGCTTTGA+AGG | - | chr1_2:42554463-42554482 | None:intergenic | 40.0% | |
| GGCATATGTGAAAATGACAG+TGG | + | chr1_2:42554724-42554743 | Msa0071090:three_prime_UTR | 40.0% | |
| CTCTTTGGATACCATCAAGG+AGG | - | chr1_2:42550302-42550321 | None:intergenic | 45.0% | |
| !! | CAAACAGCTGGTCTTCTCTT+TGG | - | chr1_2:42550317-42550336 | None:intergenic | 45.0% |
| ! | AGGTCCATCGCTAATTTGTG+TGG | + | chr1_2:42550387-42550406 | Msa0071090:CDS | 45.0% |
| ! | GGTCCATCGCTAATTTGTGT+GGG | + | chr1_2:42550388-42550407 | Msa0071090:CDS | 45.0% |
| !! | GATCAGTTGGCAAAGCATTG+CGG | - | chr1_2:42550425-42550444 | None:intergenic | 45.0% |
| GCTGTTAATTACACAACCGG+AGG | - | chr1_2:42550526-42550545 | None:intergenic | 45.0% | |
| !! | GAGGTGCAATGTTTTAGACC+TGG | + | chr1_2:42550575-42550594 | Msa0071090:CDS | 45.0% |
| !! | AGAGGTGTCTTTGGAACAGT+GGG | + | chr1_2:42550725-42550744 | Msa0071090:CDS | 45.0% |
| TTGGGGCAAACAGATACAAC+TGG | + | chr1_2:42551178-42551197 | Msa0071090:CDS | 45.0% | |
| TTGGAGAAGCCAAAAAGGGT+TGG | + | chr1_2:42551229-42551248 | Msa0071090:CDS | 45.0% | |
| AACTCAGTCGCTCTGTTACT+TGG | + | chr1_2:42551635-42551654 | Msa0071090:CDS | 45.0% | |
| ! | ACTCAGTCGCTCTGTTACTT+GGG | + | chr1_2:42551636-42551655 | Msa0071090:CDS | 45.0% |
| AAGCAACTGCTTCTGATGCT+TGG | - | chr1_2:42551819-42551838 | None:intergenic | 45.0% | |
| CGATACTGCACAAGATGCAT+TGG | - | chr1_2:42551938-42551957 | None:intergenic | 45.0% | |
| !! | TGCTGTTGAGGAAAGTACTG+TGG | + | chr1_2:42551993-42552012 | Msa0071090:CDS | 45.0% |
| CTGAAATGGCCAAAGAAACC+TGG | + | chr1_2:42552051-42552070 | Msa0071090:CDS | 45.0% | |
| TCGGAAACTCCAGGTTTCTT+TGG | - | chr1_2:42552063-42552082 | None:intergenic | 45.0% | |
| ! | TGTTTGACTCTGAAGACACG+TGG | + | chr1_2:42552091-42552110 | Msa0071090:CDS | 45.0% |
| ! | TGTGGAATGCCTTCTTTTCG+TGG | + | chr1_2:42552268-42552287 | Msa0071090:CDS | 45.0% |
| ! | CTGGAATTTGCTTCCTGCAA+AGG | + | chr1_2:42552947-42552966 | Msa0071090:intron | 45.0% |
| CTTCCTGCAAAGGCAAGATA+AGG | + | chr1_2:42552957-42552976 | Msa0071090:intron | 45.0% | |
| CAACCTTATCTTGCCTTTGC+AGG | - | chr1_2:42552963-42552982 | None:intergenic | 45.0% | |
| CTGCAAAGGCAAGATAAGGT+TGG | + | chr1_2:42552961-42552980 | Msa0071090:intron | 45.0% | |
| GCTATTGACCCATACCACAT+TGG | + | chr1_2:42552986-42553005 | Msa0071090:intron | 45.0% | |
| TAAGGCTGTCTGTTGCAGTT+AGG | + | chr1_2:42553098-42553117 | Msa0071090:intron | 45.0% | |
| ! | GCTGGATACAATGTCGTTTG+TGG | + | chr1_2:42553225-42553244 | Msa0071090:CDS | 45.0% |
| CAGAATGAAACAGTGGCAAG+TGG | + | chr1_2:42553264-42553283 | Msa0071090:CDS | 45.0% | |
| ATGGGGCAGCTAAGTTATGT+GGG | - | chr1_2:42553710-42553729 | None:intergenic | 45.0% | |
| CATGGTGCAGCTAAGTTATG+TGG | - | chr1_2:42553863-42553882 | None:intergenic | 45.0% | |
| !!! | ATATGGGCACTTGTTTTGGG+TGG | + | chr1_2:42554104-42554123 | Msa0071090:intron | 45.0% |
| CCAAACCAACACCAGAACAA+TGG | - | chr1_2:42554232-42554251 | None:intergenic | 45.0% | |
| !! | CCATTGTTCTGGTGTTGGTT+TGG | + | chr1_2:42554229-42554248 | Msa0071090:intron | 45.0% |
| GAGTGGTTCACAAATAGGCA+AGG | + | chr1_2:42554265-42554284 | Msa0071090:CDS | 45.0% | |
| GGCCACGGTGTACTTATAAT+TGG | - | chr1_2:42554513-42554532 | None:intergenic | 45.0% | |
| ATTGGATTCCTCTGTCGCTA+GGG | - | chr1_2:42554535-42554554 | None:intergenic | 45.0% | |
| AATTGGATTCCTCTGTCGCT+AGG | - | chr1_2:42554536-42554555 | None:intergenic | 45.0% | |
| TTGCAATTGGCCCTCCTTGA+TGG | + | chr1_2:42550288-42550307 | Msa0071090:CDS | 50.0% | |
| CTTTGCCAACTGATCGTCCT+CGG | + | chr1_2:42550430-42550449 | Msa0071090:CDS | 50.0% | |
| GTCCTCGGAAGGGTAGATAT+CGG | + | chr1_2:42550445-42550464 | Msa0071090:CDS | 50.0% | |
| ATCCGATATCTACCCTTCCG+AGG | - | chr1_2:42550450-42550469 | None:intergenic | 50.0% | |
| CATTGCACCTCTCATCTTGC+AGG | - | chr1_2:42550566-42550585 | None:intergenic | 50.0% | |
| AACAGAAACTGCCACTGCAG+AGG | + | chr1_2:42550707-42550726 | Msa0071090:CDS | 50.0% | |
| TTCCAAAGACACCTCTGCAG+TGG | - | chr1_2:42550721-42550740 | None:intergenic | 50.0% | |
| !! | CAGAGGTGTCTTTGGAACAG+TGG | + | chr1_2:42550724-42550743 | Msa0071090:CDS | 50.0% |
| CACAATCGGCAGTGGGAAAA+TGG | - | chr1_2:42551037-42551056 | None:intergenic | 50.0% | |
| !! | CGACTTGCCACGATTAGCTT+TGG | - | chr1_2:42551071-42551090 | None:intergenic | 50.0% |
| GGCTTCTCCAATATGGATGG+CGG | - | chr1_2:42551220-42551239 | None:intergenic | 50.0% | |
| ! | GGGTTGGCAATAAAGTGGTC+AGG | + | chr1_2:42551245-42551264 | Msa0071090:CDS | 50.0% |
| TGCTTCTGATGCTTGGCTCA+AGG | - | chr1_2:42551812-42551831 | None:intergenic | 50.0% | |
| GCATCAGAAGCAGTTGCTTC+TGG | + | chr1_2:42551820-42551839 | Msa0071090:CDS | 50.0% | |
| ! | AGCAGTTGCTTCTGGAGACT+CGG | + | chr1_2:42551828-42551847 | Msa0071090:CDS | 50.0% |
| ! | TCTTGTGCAGTATCGGAAGC+AGG | + | chr1_2:42551943-42551962 | Msa0071090:intron | 50.0% |
| ! | TCAACAGCATTGGGAGGATG+TGG | - | chr1_2:42551982-42552001 | None:intergenic | 50.0% |
| ACATCCTCCCAATGCTGTTG+AGG | + | chr1_2:42551981-42552000 | Msa0071090:CDS | 50.0% | |
| ! | CTTTCCTCAACAGCATTGGG+AGG | - | chr1_2:42551988-42552007 | None:intergenic | 50.0% |
| TGGTTTGATGCTCCACCAGA+AGG | + | chr1_2:42552111-42552130 | Msa0071090:CDS | 50.0% | |
| CTGAGCTCTTCAACAACAGC+AGG | - | chr1_2:42552456-42552475 | None:intergenic | 50.0% | |
| CTGCTGTTGTTGAAGAGCTC+AGG | + | chr1_2:42552454-42552473 | Msa0071090:CDS | 50.0% | |
| TGCACAATGTTGGCGAGTTC+TGG | + | chr1_2:42552928-42552947 | Msa0071090:intron | 50.0% | |
| !! | TCTCATACATGACGGACAGG+AGG | + | chr1_2:42553338-42553357 | Msa0071090:CDS | 50.0% |
| !! | CTCATACATGACGGACAGGA+GGG | + | chr1_2:42553339-42553358 | Msa0071090:CDS | 50.0% |
| ! | CAGGAGGGACTTGTTTCTCA+AGG | + | chr1_2:42553354-42553373 | Msa0071090:CDS | 50.0% |
| TGGGGCAGCTAAGTTATGTG+GGG | - | chr1_2:42553709-42553728 | None:intergenic | 50.0% | |
| CATGGGGCAGCTAAGTTATG+TGG | - | chr1_2:42553711-42553730 | None:intergenic | 50.0% | |
| AGGGATCAAGCGTGTTTGTC+AGG | - | chr1_2:42553765-42553784 | None:intergenic | 50.0% | |
| !! | TGGTGTTGGTTTGGTGAAGC+AGG | + | chr1_2:42554238-42554257 | Msa0071090:intron | 50.0% |
| !! | TTGGTGAAGCAGGTTCTGAG+TGG | + | chr1_2:42554248-42554267 | Msa0071090:intron | 50.0% |
| ! | AAATGAGGTGCTCGACCAAG+TGG | - | chr1_2:42554323-42554342 | None:intergenic | 50.0% |
| TTGGATTCCTCTGTCGCTAG+GGG | - | chr1_2:42554534-42554553 | None:intergenic | 50.0% | |
| GAAGACCAGCTGTTTGCAGC+TGG | + | chr1_2:42550321-42550340 | Msa0071090:CDS | 55.0% | |
| CAGATCCAGCTGCAAACAGC+TGG | - | chr1_2:42550329-42550348 | None:intergenic | 55.0% | |
| !! | GGCAAAGCATTGCGGCACAA+TGG | - | chr1_2:42550417-42550436 | None:intergenic | 55.0% |
| CCAACTGATCGTCCTCGGAA+GGG | + | chr1_2:42550435-42550454 | Msa0071090:CDS | 55.0% | |
| !! | TGCCACTGCAGAGGTGTCTT+TGG | + | chr1_2:42550716-42550735 | Msa0071090:CDS | 55.0% |
| !! | GTGTCTTTGGAACAGTGGGC+TGG | + | chr1_2:42550729-42550748 | Msa0071090:CDS | 55.0% |
| TGCAACGCACAATCGGCAGT+GGG | - | chr1_2:42551044-42551063 | None:intergenic | 55.0% | |
| ! | ACTGCCGATTGTGCGTTGCA+GGG | + | chr1_2:42551044-42551063 | Msa0071090:intron | 55.0% |
| TGGACCCTGCAACGCACAAT+CGG | - | chr1_2:42551051-42551070 | None:intergenic | 55.0% | |
| GCAGGGTCCAAAGCTAATCG+TGG | + | chr1_2:42551061-42551080 | Msa0071090:intron | 55.0% | |
| GACTCGGATCCCAATGATGC+TGG | + | chr1_2:42551844-42551863 | Msa0071090:CDS | 55.0% | |
| GCCAACTGATCGTCCTCGGA+AGG | + | chr1_2:42550434-42550453 | Msa0071090:CDS | 60.0% | |
| CCCTTCCGAGGACGATCAGT+TGG | - | chr1_2:42550438-42550457 | None:intergenic | 60.0% | |
| CTGGGAGCCTGCAAGATGAG+AGG | + | chr1_2:42550556-42550575 | Msa0071090:CDS | 60.0% | |
| CTGCAACGCACAATCGGCAG+TGG | - | chr1_2:42551045-42551064 | None:intergenic | 60.0% | |
| ! | CACTGCCGATTGTGCGTTGC+AGG | + | chr1_2:42551043-42551062 | Msa0071090:intron | 60.0% |
| TCCTCTGTCGCTAGGGGCCA+CGG | - | chr1_2:42554528-42554547 | None:intergenic | 65.0% | |
| ACCGTGGCCCCTAGCGACAG+AGG | + | chr1_2:42554524-42554543 | Msa0071090:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 42550183 | 42554804 | 42550183 | ID=Msa0071090;Name=Msa0071090 |
| chr1_2 | mRNA | 42550183 | 42554804 | 42550183 | ID=Msa0071090-mRNA-1;Parent=Msa0071090;Name=Msa0071090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.83|1|1|1|6|440|723 |
| chr1_2 | exon | 42550183 | 42550831 | 42550183 | ID=Msa0071090-mRNA-1:exon:12908;Parent=Msa0071090-mRNA-1 |
| chr1_2 | exon | 42551065 | 42551865 | 42551065 | ID=Msa0071090-mRNA-1:exon:12909;Parent=Msa0071090-mRNA-1 |
| chr1_2 | exon | 42551953 | 42552146 | 42551953 | ID=Msa0071090-mRNA-1:exon:12910;Parent=Msa0071090-mRNA-1 |
| chr1_2 | exon | 42552249 | 42552512 | 42552249 | ID=Msa0071090-mRNA-1:exon:12911;Parent=Msa0071090-mRNA-1 |
| chr1_2 | exon | 42553217 | 42553375 | 42553217 | ID=Msa0071090-mRNA-1:exon:12912;Parent=Msa0071090-mRNA-1 |
| chr1_2 | exon | 42554260 | 42554804 | 42554260 | ID=Msa0071090-mRNA-1:exon:12913;Parent=Msa0071090-mRNA-1 |
| chr1_2 | CDS | 42550183 | 42550831 | 42550183 | ID=Msa0071090-mRNA-1:cds;Parent=Msa0071090-mRNA-1 |
| chr1_2 | CDS | 42551065 | 42551865 | 42551065 | ID=Msa0071090-mRNA-1:cds;Parent=Msa0071090-mRNA-1 |
| chr1_2 | CDS | 42551953 | 42552146 | 42551953 | ID=Msa0071090-mRNA-1:cds;Parent=Msa0071090-mRNA-1 |
| chr1_2 | CDS | 42552249 | 42552512 | 42552249 | ID=Msa0071090-mRNA-1:cds;Parent=Msa0071090-mRNA-1 |
| chr1_2 | CDS | 42553217 | 42553375 | 42553217 | ID=Msa0071090-mRNA-1:cds;Parent=Msa0071090-mRNA-1 |
| chr1_2 | CDS | 42554260 | 42554364 | 42554260 | ID=Msa0071090-mRNA-1:cds;Parent=Msa0071090-mRNA-1 |
| chr1_2 | three_prime_UTR | 42554365 | 42554804 | 42554365 | ID=Msa0071090-mRNA-1:three_prime_utr;Parent=Msa0071090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
