AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0119090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119090 MtrunA17_Chr1g0176591 93.750 704 41 2 21 723 1 702 0.0 1345
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0119090 AT5G26760.2 41.261 761 364 14 20 723 1 735 1.60e-172 512
Msa0119090 AT5G26760.1 48.571 350 170 4 376 723 89 430 7.40e-105 327

Find 152 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGAATTTCCATCATAAA+TGG 0.132481 1_3:+42627259 Msa0119090:three_prime_UTR
CTTTGTGCAGTGAAAGAATT+TGG 0.146405 1_3:+42624585 Msa0119090:CDS
TTGGAACCAATGGAAAATTT+TGG 0.149339 1_3:+42623530 Msa0119090:CDS
TCTTCTTTGGCATATATATA+TGG 0.189186 1_3:+42625191 Msa0119090:CDS
ATTCAATTGCTTGTTCAATT+AGG 0.231043 1_3:-42624455 None:intergenic
GAAGAATTTCTATCAGTTAA+TGG 0.239586 1_3:+42625233 Msa0119090:CDS
AACATTGGCAGAATTTAAAT+TGG 0.247143 1_3:-42624421 None:intergenic
GAATCATTGTCTCTTTGTTT+TGG 0.252817 1_3:-42623671 None:intergenic
AACAATGTTCTTAGGTTGTT+TGG 0.256285 1_3:+42623497 Msa0119090:CDS
AATGATTATAAAAGTTTAAT+TGG 0.257744 1_3:+42623982 Msa0119090:CDS
CCATATTGGAGAAGCCAAAA+AGG 0.270922 1_3:+42624115 Msa0119090:CDS
GCATCAGAAGCAGTTGCTTC+TGG 0.271175 1_3:+42624711 Msa0119090:CDS
GTGGATAACATCATCTTCTT+TGG 0.277954 1_3:+42625178 Msa0119090:CDS
CAAACAGCTGGTCTTCTCTT+TGG 0.278459 1_3:-42623205 None:intergenic
TCGGAAACTCCAGGTTTCTT+TGG 0.282638 1_3:-42624951 None:intergenic
AGAATTTGGAAACATTAAAA+AGG 0.285942 1_3:+42624599 Msa0119090:CDS
AAGTATCATATAGATAAAAT+TGG 0.288959 1_3:-42627441 None:intergenic
TTAGATTTAAGAGAAGATTT+TGG 0.295505 1_3:-42624492 None:intergenic
AGAAACTGAACAATGTTCTT+AGG 0.303436 1_3:+42623489 Msa0119090:CDS
GGCCACGGTGTACTTATAAT+TGG 0.312064 1_3:-42627401 None:intergenic
TGCCACTGCAGAGGTGTCTT+TGG 0.317308 1_3:+42623607 Msa0119090:CDS
AAGAATTTCTATCAGTTAAT+GGG 0.321763 1_3:+42625234 Msa0119090:CDS
GATGAGAAAATCAACAGTTC+TGG 0.329888 1_3:+42624552 Msa0119090:CDS
AACTCAGTCGCTCTGTTACT+TGG 0.346040 1_3:+42624526 Msa0119090:CDS
ACAAAGAGACAATGATTCTA+AGG 0.351983 1_3:+42623676 Msa0119090:CDS
TTGCAATTGGCCCTCCTTGA+TGG 0.353204 1_3:+42623179 Msa0119090:CDS
TCAACACTCCAATGCTTTGA+AGG 0.354297 1_3:-42627351 None:intergenic
TAACCCTCAATTGCATTTGA+TGG 0.359086 1_3:-42623644 None:intergenic
GTTCTGAGTGGTTCACAAAT+AGG 0.360354 1_3:+42627151 Msa0119090:CDS
GAAATAAAACAAACATTAGT+TGG 0.365903 1_3:+42625302 Msa0119090:CDS
CATTGCACCTCTCATCTTGC+AGG 0.368177 1_3:-42623454 None:intergenic
CGACTTGCCACGATTAGCTT+TGG 0.375326 1_3:-42623959 None:intergenic
ATCACATTCTCTTTCTGAAA+TGG 0.377271 1_3:-42624313 None:intergenic
ACATCAATTACCAGCATCAT+TGG 0.377762 1_3:-42624745 None:intergenic
AATTAAGCCGCCATCCATAT+TGG 0.396147 1_3:+42624101 Msa0119090:CDS
ACAGTCAAACTAAAACCTTC+TGG 0.396644 1_3:-42625017 None:intergenic
GAACTTAATCAAACACGTAT+AGG 0.396804 1_3:+42627292 Msa0119090:three_prime_UTR
CTTCTTTGGCATATATATAT+GGG 0.399659 1_3:+42625192 Msa0119090:CDS
TCCTCTGTCGCTAGGGGCCA+CGG 0.401182 1_3:-42627416 None:intergenic
AAAATTCAGTTACTCTGAAA+TGG 0.402967 1_3:+42624928 Msa0119090:CDS
AGAGTCAAACAAATCAAATT+CGG 0.409918 1_3:-42624970 None:intergenic
TTCTAGAAACTTGCTTCTGA+TGG 0.413119 1_3:+42623115 Msa0119090:CDS
CACTGTTTCATTCTGAATGC+TGG 0.415973 1_3:-42626147 None:intergenic
CTGCTGTTGTTGAAGAGCTC+AGG 0.417817 1_3:+42625345 Msa0119090:CDS
CGCTTGCTCTAATATATCTA+CGG 0.420079 1_3:-42625378 None:intergenic
ATTGAATTTCCATCATAAAT+GGG 0.426414 1_3:+42627260 Msa0119090:three_prime_UTR
TCTAATATATCTACGGGTAT+TGG 0.431896 1_3:-42625371 None:intergenic
TAGTGTTTCGAAAGTATCAT+TGG 0.437175 1_3:+42624050 Msa0119090:CDS
ATGCAAAATTGATATTCAAA+TGG 0.438185 1_3:+42627488 Msa0119090:three_prime_UTR
CAATAGAAAACACAATAACT+TGG 0.448887 1_3:-42627519 None:intergenic
TTTGCTGTTAATTACACAAC+CGG 0.450833 1_3:-42623417 None:intergenic
ATGAGAAAATCAACAGTTCT+GGG 0.455398 1_3:+42624553 Msa0119090:CDS
AGTGTTTCGAAAGTATCATT+GGG 0.455834 1_3:+42624051 Msa0119090:CDS
CTGAAATGGCCAAAGAAACC+TGG 0.462966 1_3:+42624942 Msa0119090:CDS
TAGATATCGGATTTCATTGA+AGG 0.467664 1_3:+42623349 Msa0119090:CDS
GAAGACCAGCTGTTTGCAGC+TGG 0.470370 1_3:+42623212 Msa0119090:CDS
TGATACTTTAATGCTGTTAG+TGG 0.477402 1_3:+42627456 Msa0119090:three_prime_UTR
AGTACTTTCCTCAACAGCAT+TGG 0.477464 1_3:-42624880 None:intergenic
TGTGAAAATGACAGTGGAAA+AGG 0.478655 1_3:+42627621 Msa0119090:three_prime_UTR
ATTGGATTCCTCTGTCGCTA+GGG 0.478912 1_3:-42627423 None:intergenic
AAGCAACTGCTTCTGATGCT+TGG 0.479108 1_3:-42624707 None:intergenic
AAATTTGAACTTGGAACCAA+TGG 0.481401 1_3:+42623520 Msa0119090:CDS
GTACTTTCCTCAACAGCATT+GGG 0.483000 1_3:-42624879 None:intergenic
GAACATTGTTCAGTTTCTCC+AGG 0.487506 1_3:-42623484 None:intergenic
TAGGAATTTCTCTTCAACAT+TGG 0.487770 1_3:-42624436 None:intergenic
ACTCAGTCGCTCTGTTACTT+GGG 0.488356 1_3:+42624527 Msa0119090:CDS
GGCAGAATTTAAATTGGAAG+TGG 0.495798 1_3:-42624415 None:intergenic
GCTGGATACAATGTCGTTTG+TGG 0.496169 1_3:+42626116 Msa0119090:CDS
CTTCTCTTTGGATACCATCA+AGG 0.498483 1_3:-42623193 None:intergenic
TGGACCATCAAATGCAATTG+AGG 0.498530 1_3:+42623640 Msa0119090:CDS
CATCAATTACCAGCATCATT+GGG 0.503869 1_3:-42624744 None:intergenic
TTTGGCTTCTCCAATATGGA+TGG 0.512435 1_3:-42624111 None:intergenic
GTGTCTTTGGAACAGTGGGC+TGG 0.514994 1_3:+42623620 Msa0119090:CDS
TGATGTTATCCACGAAAAGA+AGG 0.516826 1_3:-42625168 None:intergenic
AATTGGATTCCTCTGTCGCT+AGG 0.517271 1_3:-42627424 None:intergenic
CAGATCCAGCTGCAAACAGC+TGG 0.520179 1_3:-42623217 None:intergenic
GGGTTGGCAATAAAGTGGTC+AGG 0.521721 1_3:+42624136 Msa0119090:CDS
TTGGGGCAAACAGATACAAC+TGG 0.522191 1_3:+42624069 Msa0119090:CDS
ATGCTTTGAAGGTAAAAGAA+AGG 0.523749 1_3:-42627340 None:intergenic
AAGGATTTCGTTGTACCACT+TGG 0.526604 1_3:+42627196 Msa0119090:CDS
GACTCGGATCCCAATGATGC+TGG 0.527843 1_3:+42624735 Msa0119090:CDS
AGAGGTGTCTTTGGAACAGT+GGG 0.528299 1_3:+42623616 Msa0119090:CDS
AGCAGTTGCTTCTGGAGACT+CGG 0.529316 1_3:+42624719 Msa0119090:CDS
GTCCTCGGAAGGGTAGATAT+CGG 0.529838 1_3:+42623336 Msa0119090:CDS
GATACTTTAATGCTGTTAGT+GGG 0.530504 1_3:+42627457 Msa0119090:three_prime_UTR
GCTTGCTCTAATATATCTAC+GGG 0.532496 1_3:-42625377 None:intergenic
CCTCATTTCTCTTCTCAAAG+TGG 0.532595 1_3:+42627226 Msa0119090:CDS
ACATCCTCCCAATGCTGTTG+AGG 0.537391 1_3:+42624872 Msa0119090:CDS
AAATCAAATTCGGAAACTCC+AGG 0.537463 1_3:-42624960 None:intergenic
GCATTCCACATAGTAGCAAA+AGG 0.537790 1_3:-42625146 None:intergenic
CTTTGCCAACTGATCGTCCT+CGG 0.538022 1_3:+42623321 Msa0119090:CDS
TGCTTCTGATGCTTGGCTCA+AGG 0.539836 1_3:-42624700 None:intergenic
GTTGTTTGGAAATTTGAACT+TGG 0.540609 1_3:+42623511 Msa0119090:CDS
TCAACAGCATTGGGAGGATG+TGG 0.540662 1_3:-42624870 None:intergenic
GCCAACTGATCGTCCTCGGA+AGG 0.542811 1_3:+42623325 Msa0119090:CDS
AGCAAAATTGTCTTGACAGA+TGG 0.547346 1_3:+42625269 Msa0119090:CDS
AAGTTTCTAGAAATAGCATA+AGG 0.550886 1_3:-42623104 None:intergenic
CTGAGCTCTTCAACAACAGC+AGG 0.551817 1_3:-42625344 None:intergenic
CCCTTCCGAGGACGATCAGT+TGG 0.553458 1_3:-42623326 None:intergenic
GGCTTCTCCAATATGGATGG+CGG 0.555808 1_3:-42624108 None:intergenic
TCTTGTGCAGTATCGGAAGC+AGG 0.557558 1_3:+42624834 Msa0119090:intron
GGACCATCAAATGCAATTGA+GGG 0.558886 1_3:+42623641 Msa0119090:CDS
AAATCTTCTCTTAAATCTAA+CGG 0.559728 1_3:+42624495 Msa0119090:CDS
ATGAAGATGTTGTAACTGAA+AGG 0.563773 1_3:+42623258 Msa0119090:CDS
TGGTTTGATGCTCCACCAGA+AGG 0.577882 1_3:+42625002 Msa0119090:CDS
CAGGAGGGACTTGTTTCTCA+AGG 0.580423 1_3:+42626245 Msa0119090:CDS
TTATCTCATACATGACGGAC+AGG 0.585032 1_3:+42626226 Msa0119090:CDS
AGGTCCATCGCTAATTTGTG+TGG 0.588401 1_3:+42623278 Msa0119090:CDS
TTCAACAGAAGGATCATGAG+AGG 0.591346 1_3:-42624268 None:intergenic
CTTTGGCATATATATATGGG+AGG 0.592014 1_3:+42625195 Msa0119090:CDS
CAGAGGTGTCTTTGGAACAG+TGG 0.592215 1_3:+42623615 Msa0119090:CDS
CAGAACAGAATGATTCTGAA+AGG 0.593966 1_3:+42624337 Msa0119090:CDS
CTCATACATGACGGACAGGA+GGG 0.594470 1_3:+42626230 Msa0119090:CDS
AAGTACCTCAACAAAAGAGA+AGG 0.595618 1_3:+42624212 Msa0119090:CDS
AAAACATGTAAGTTTCGTGT+AGG 0.601008 1_3:-42623388 None:intergenic
CATCGATTAATACAAAATGT+CGG 0.605502 1_3:-42627545 None:intergenic
ACCGTGGCCCCTAGCGACAG+AGG 0.607010 1_3:+42627415 Msa0119090:three_prime_UTR
GAAATCGATACAACTCAAAG+AGG 0.607557 1_3:+42624359 Msa0119090:CDS
TTCCAAAGACACCTCTGCAG+TGG 0.615979 1_3:-42623609 None:intergenic
TTTGGCATATATATATGGGA+GGG 0.616710 1_3:+42625196 Msa0119090:CDS
GATTTCATTGAAGGAGCACA+AGG 0.625957 1_3:+42623358 Msa0119090:CDS
GTCAAACTAAAACCTTCTGG+TGG 0.626841 1_3:-42625014 None:intergenic
TCTCATACATGACGGACAGG+AGG 0.627733 1_3:+42626229 Msa0119090:CDS
TACTCTTATCTCATACATGA+CGG 0.628188 1_3:+42626221 Msa0119090:CDS
CTGGGAGCCTGCAAGATGAG+AGG 0.628600 1_3:+42623447 Msa0119090:CDS
AACAGAAACTGCCACTGCAG+AGG 0.631088 1_3:+42623598 Msa0119090:CDS
CAGAATGAAACAGTGGCAAG+TGG 0.634857 1_3:+42626155 Msa0119090:CDS
GGCAAAGCATTGCGGCACAA+TGG 0.636176 1_3:-42623305 None:intergenic
CCACTTTGAGAAGAGAAATG+AGG 0.636699 1_3:-42627226 None:intergenic
GAGTGGTTCACAAATAGGCA+AGG 0.636728 1_3:+42627156 Msa0119090:CDS
CTCTTTGGATACCATCAAGG+AGG 0.637806 1_3:-42623190 None:intergenic
TTTCTGAAATGGTAATCGAG+TGG 0.640137 1_3:-42624302 None:intergenic
CCAACTGATCGTCCTCGGAA+GGG 0.642742 1_3:+42623326 Msa0119090:CDS
GGTCCATCGCTAATTTGTGT+GGG 0.648300 1_3:+42623279 Msa0119090:CDS
ATACCCACACAAATTAGCGA+TGG 0.649576 1_3:-42623282 None:intergenic
TTGGATTCCTCTGTCGCTAG+GGG 0.650829 1_3:-42627422 None:intergenic
CTTTCCTCAACAGCATTGGG+AGG 0.652955 1_3:-42624876 None:intergenic
TCTTTGGATACCATCAAGGA+GGG 0.655363 1_3:-42623189 None:intergenic
GTCATGTATGAGATAAGAGT+AGG 0.656182 1_3:-42626219 None:intergenic
AAATGAGGTGCTCGACCAAG+TGG 0.656919 1_3:-42627211 None:intergenic
GATCAGTTGGCAAAGCATTG+CGG 0.658842 1_3:-42623313 None:intergenic
AGATATATTAGAGCAAGCGA+TGG 0.661113 1_3:+42625382 Msa0119090:CDS
TGTTTGACTCTGAAGACACG+TGG 0.666494 1_3:+42624982 Msa0119090:CDS
ATCCGATATCTACCCTTCCG+AGG 0.667151 1_3:-42623338 None:intergenic
TTGGTGAAGCAGGTTCTGAG+TGG 0.679031 1_3:+42627139 Msa0119090:intron
GTGTTTCGAAAGTATCATTG+GGG 0.679627 1_3:+42624052 Msa0119090:CDS
GCTGTTAATTACACAACCGG+AGG 0.683543 1_3:-42623414 None:intergenic
GCAGGGTCCAAAGCTAATCG+TGG 0.689841 1_3:+42623952 Msa0119090:intron
CAGCATTCAGAATGAAACAG+TGG 0.697410 1_3:+42626148 Msa0119090:CDS
GGCATATGTGAAAATGACAG+TGG 0.700784 1_3:+42627615 Msa0119090:three_prime_UTR
TGCTGTTGAGGAAAGTACTG+TGG 0.706731 1_3:+42624884 Msa0119090:CDS
ATCCAATTATAAGTACACCG+TGG 0.818278 1_3:+42627399 Msa0119090:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATTATAAAAGTTTAAT+TGG + chr1_3:42623982-42624001 Msa0119090:CDS 10.0%
!!! TATTATTTTACTCTATAATT+TGG + chr1_3:42626780-42626799 Msa0119090:intron 10.0%
!! AGGATTTCAAAAAATTATAT+TGG - chr1_3:42623744-42623763 None:intergenic 15.0%
!! ATTAAATATTTATTACACTC+TGG + chr1_3:42625452-42625471 Msa0119090:intron 15.0%
!!! TAAAACATTGCTTTATTAAT+TGG + chr1_3:42625743-42625762 Msa0119090:intron 15.0%
!!! AAACATTATAAATTTTCGAA+TGG + chr1_3:42625786-42625805 Msa0119090:intron 15.0%
!!! TTTCTAAATTTTGAAAAAGA+AGG - chr1_3:42625949-42625968 None:intergenic 15.0%
!! TACTAGCAAATAAAATAATA+AGG - chr1_3:42626509-42626528 None:intergenic 15.0%
!!! TATTTTATTTGCTAGTATTT+TGG + chr1_3:42626512-42626531 Msa0119090:intron 15.0%
!! AAAACTGAAAATAATAAGAT+AGG - chr1_3:42627048-42627067 None:intergenic 15.0%
!! AAGTATCATATAGATAAAAT+TGG - chr1_3:42627444-42627463 None:intergenic 15.0%
!! TCTAAGAAAAATGCTAAAAA+AGG + chr1_3:42623701-42623720 Msa0119090:CDS 20.0%
!! ATACTATAATTGTAAAGTTG+AGG + chr1_3:42623853-42623872 Msa0119090:intron 20.0%
!!! TTAGATTTAAGAGAAGATTT+TGG - chr1_3:42624495-42624514 None:intergenic 20.0%
!! AAATCTTCTCTTAAATCTAA+CGG + chr1_3:42624495-42624514 Msa0119090:CDS 20.0%
!! AGAATTTGGAAACATTAAAA+AGG + chr1_3:42624599-42624618 Msa0119090:CDS 20.0%
!! AAGAATTTCTATCAGTTAAT+GGG + chr1_3:42625234-42625253 Msa0119090:CDS 20.0%
!! GAAATAAAACAAACATTAGT+TGG + chr1_3:42625302-42625321 Msa0119090:CDS 20.0%
!!! TAATGACTTAGTTTAAAACA+AGG - chr1_3:42625436-42625455 None:intergenic 20.0%
!! TAGAAATTTCCAAAAAATCA+TGG + chr1_3:42625963-42625982 Msa0119090:intron 20.0%
!! AGAAATTTCCAAAAAATCAT+GGG + chr1_3:42625964-42625983 Msa0119090:intron 20.0%
!!! TATCCATTTTTGTTTATATG+AGG + chr1_3:42626057-42626076 Msa0119090:intron 20.0%
!! ATCAGAACAATATAAACAAA+TGG - chr1_3:42626276-42626295 None:intergenic 20.0%
!! ATCAGAACAATATAAACAAA+CGG - chr1_3:42626276-42626295 None:intergenic 20.0%
!!! TTATTTTACCCACATTAATA+TGG + chr1_3:42626404-42626423 Msa0119090:intron 20.0%
!!! AAGCATTTTATAATGATATC+AGG + chr1_3:42626450-42626469 Msa0119090:intron 20.0%
!! AATAAGGATTAAATGTTTGT+CGG - chr1_3:42626493-42626512 None:intergenic 20.0%
!!! CATTTAGAATAAACAAACAA+AGG - chr1_3:42626563-42626582 None:intergenic 20.0%
!! CACTAACAAATGTAATAATA+GGG - chr1_3:42626675-42626694 None:intergenic 20.0%
!! ACACTAACAAATGTAATAAT+AGG - chr1_3:42626676-42626695 None:intergenic 20.0%
!!! TATTACATTTGTTAGTGTTT+TGG + chr1_3:42626678-42626697 Msa0119090:intron 20.0%
!!! TTTTATTTTGTTAAGTTTGG+AGG - chr1_3:42626729-42626748 None:intergenic 20.0%
!!! GGATTTTATTTTGTTAAGTT+TGG - chr1_3:42626732-42626751 None:intergenic 20.0%
!! AGTAAAATAATATCTAAGCA+TGG - chr1_3:42626772-42626791 None:intergenic 20.0%
!!! ATAATTTGGTTTATCTAATG+TGG + chr1_3:42626794-42626813 Msa0119090:intron 20.0%
!! CAATTACAATTTACAACTAT+TGG - chr1_3:42626824-42626843 None:intergenic 20.0%
!!! GCAAGTAAATTTTATTCATA+TGG - chr1_3:42626901-42626920 None:intergenic 20.0%
!! ATTGAATTTCCATCATAAAT+GGG + chr1_3:42627260-42627279 Msa0119090:three_prime_UTR 20.0%
!! ATGCAAAATTGATATTCAAA+TGG + chr1_3:42627488-42627507 Msa0119090:three_prime_UTR 20.0%
!! AAGTTTCTAGAAATAGCATA+AGG - chr1_3:42623107-42623126 None:intergenic 25.0%
! AACATTGGCAGAATTTAAAT+TGG - chr1_3:42624424-42624443 None:intergenic 25.0%
! ATTCAATTGCTTGTTCAATT+AGG - chr1_3:42624458-42624477 None:intergenic 25.0%
!! AAAATTCAGTTACTCTGAAA+TGG + chr1_3:42624928-42624947 Msa0119090:CDS 25.0%
! AGAGTCAAACAAATCAAATT+CGG - chr1_3:42624973-42624992 None:intergenic 25.0%
! TCTTCTTTGGCATATATATA+TGG + chr1_3:42625191-42625210 Msa0119090:CDS 25.0%
! CTTCTTTGGCATATATATAT+GGG + chr1_3:42625192-42625211 Msa0119090:CDS 25.0%
! GAAGAATTTCTATCAGTTAA+TGG + chr1_3:42625233-42625252 Msa0119090:CDS 25.0%
! AATATTTATTACACTCTGGT+AGG + chr1_3:42625456-42625475 Msa0119090:intron 25.0%
! ATGCTAAAATTGATGAAACT+TGG - chr1_3:42625674-42625693 None:intergenic 25.0%
!!! CAATTTTAGCATATGTGAAA+AGG + chr1_3:42625682-42625701 Msa0119090:intron 25.0%
! GAGTATAAGAAACAAAGAAA+TGG - chr1_3:42625906-42625925 None:intergenic 25.0%
!! TTTCTTTGTTTCTTATACTC+TGG + chr1_3:42625906-42625925 Msa0119090:intron 25.0%
!! TTTCTTATACTCTGGTTTAT+AGG + chr1_3:42625914-42625933 Msa0119090:intron 25.0%
! CATCCTCATATAAACAAAAA+TGG - chr1_3:42626063-42626082 None:intergenic 25.0%
!!! TTATTTTACCCACATTACTA+TGG + chr1_3:42626299-42626318 Msa0119090:intron 25.0%
!!! AAGCATTTGATAATGATATC+AGG + chr1_3:42626345-42626364 Msa0119090:intron 25.0%
!!! TTTGATAATGATATCAGGTA+AGG + chr1_3:42626350-42626369 Msa0119090:intron 25.0%
! ATAAGGATTAAATGTTTGTC+GGG - chr1_3:42626492-42626511 None:intergenic 25.0%
!! TTCTATCATTAAGAAAGCAT+GGG - chr1_3:42626619-42626638 None:intergenic 25.0%
! TGTAAATTGTAATTGCTATG+CGG + chr1_3:42626829-42626848 Msa0119090:intron 25.0%
!!! TAATTTGTTAACCATTGTTC+TGG + chr1_3:42627109-42627128 Msa0119090:intron 25.0%
! CATTGAATTTCCATCATAAA+TGG + chr1_3:42627259-42627278 Msa0119090:three_prime_UTR 25.0%
! CAATAGAAAACACAATAACT+TGG - chr1_3:42627522-42627541 None:intergenic 25.0%
!! CATCGATTAATACAAAATGT+CGG - chr1_3:42627548-42627567 None:intergenic 25.0%
!!! TGCTGTTTTGAAATTGCAAT+TGG + chr1_3:42623166-42623185 Msa0119090:CDS 30.0%
ATGAAGATGTTGTAACTGAA+AGG + chr1_3:42623258-42623277 Msa0119090:CDS 30.0%
TAGATATCGGATTTCATTGA+AGG + chr1_3:42623349-42623368 Msa0119090:CDS 30.0%
AAAACATGTAAGTTTCGTGT+AGG - chr1_3:42623391-42623410 None:intergenic 30.0%
!! TTTGCTGTTAATTACACAAC+CGG - chr1_3:42623420-42623439 None:intergenic 30.0%
AGAAACTGAACAATGTTCTT+AGG + chr1_3:42623489-42623508 Msa0119090:CDS 30.0%
! AACAATGTTCTTAGGTTGTT+TGG + chr1_3:42623497-42623516 Msa0119090:CDS 30.0%
GTTGTTTGGAAATTTGAACT+TGG + chr1_3:42623511-42623530 Msa0119090:CDS 30.0%
AAATTTGAACTTGGAACCAA+TGG + chr1_3:42623520-42623539 Msa0119090:CDS 30.0%
! TTGGAACCAATGGAAAATTT+TGG + chr1_3:42623530-42623549 Msa0119090:CDS 30.0%
!! ACCAATGGAAAATTTTGGAA+AGG + chr1_3:42623535-42623554 Msa0119090:CDS 30.0%
! TCCTTTCCAAAATTTTCCAT+TGG - chr1_3:42623539-42623558 None:intergenic 30.0%
!! ATGGAAAATTTTGGAAAGGA+TGG + chr1_3:42623539-42623558 Msa0119090:CDS 30.0%
!! TTTTTCTGACTTGAAAATCC+AGG + chr1_3:42623571-42623590 Msa0119090:CDS 30.0%
!! GAATCATTGTCTCTTTGTTT+TGG - chr1_3:42623674-42623693 None:intergenic 30.0%
ACAAAGAGACAATGATTCTA+AGG + chr1_3:42623676-42623695 Msa0119090:CDS 30.0%
ATAAGGCTATCTAATAGTCT+AGG - chr1_3:42623764-42623783 None:intergenic 30.0%
TTTGAGCAAAAAATGGCATA+AGG - chr1_3:42623781-42623800 None:intergenic 30.0%
! AGACACTTTTGAGCAAAAAA+TGG - chr1_3:42623788-42623807 None:intergenic 30.0%
!!! TGTATTCTTTGTTTTCCTGA+TGG + chr1_3:42623819-42623838 Msa0119090:intron 30.0%
!!! GTATTCTTTGTTTTCCTGAT+GGG + chr1_3:42623820-42623839 Msa0119090:intron 30.0%
GTATATTAAAATCACCCATC+AGG - chr1_3:42623837-42623856 None:intergenic 30.0%
TATTCCATTTCTCAGAACTT+AGG - chr1_3:42623880-42623899 None:intergenic 30.0%
!! TAGTGTTTCGAAAGTATCAT+TGG + chr1_3:42624050-42624069 Msa0119090:CDS 30.0%
!! AGTGTTTCGAAAGTATCATT+GGG + chr1_3:42624051-42624070 Msa0119090:CDS 30.0%
! TATTTCCTTCTCTTTTGTTG+AGG - chr1_3:42624220-42624239 None:intergenic 30.0%
! ACAACTTTCTTTTCAACAGA+AGG - chr1_3:42624282-42624301 None:intergenic 30.0%
! ATCACATTCTCTTTCTGAAA+TGG - chr1_3:42624316-42624335 None:intergenic 30.0%
TAGGAATTTCTCTTCAACAT+TGG - chr1_3:42624439-42624458 None:intergenic 30.0%
!!! GAGAAGATTTTGGTTTAGTA+TGG - chr1_3:42624485-42624504 None:intergenic 30.0%
ATGAGAAAATCAACAGTTCT+GGG + chr1_3:42624553-42624572 Msa0119090:CDS 30.0%
GGTAATTGATGTTTCTTTAG+AGG + chr1_3:42624756-42624775 Msa0119090:intron 30.0%
TTTGGCATATATATATGGGA+GGG + chr1_3:42625196-42625215 Msa0119090:CDS 30.0%
TCTAATATATCTACGGGTAT+TGG - chr1_3:42625374-42625393 None:intergenic 30.0%
!!! TTCCTTATTTTGTGTATGAG+TGG - chr1_3:42625561-42625580 None:intergenic 30.0%
ATAAGGAATCAACAAAACTG+TGG + chr1_3:42625573-42625592 Msa0119090:intron 30.0%
AATCAACAAAACTGTGGAAA+AGG + chr1_3:42625579-42625598 Msa0119090:intron 30.0%
TCCAAAAAATCATGGGTTTA+AGG + chr1_3:42625971-42625990 Msa0119090:intron 30.0%
! TAAGTGCACAACTTTCTTTT+AGG + chr1_3:42626086-42626105 Msa0119090:intron 30.0%
TACTCTTATCTCATACATGA+CGG + chr1_3:42626221-42626240 Msa0119090:CDS 30.0%
GATTGCTACCATATTAATGT+GGG - chr1_3:42626415-42626434 None:intergenic 30.0%
AGATTGCTACCATATTAATG+TGG - chr1_3:42626416-42626435 None:intergenic 30.0%
GAATAAACAAACAAAGGTGA+AGG - chr1_3:42626557-42626576 None:intergenic 30.0%
! TCTATCATTAAGAAAGCATG+GGG - chr1_3:42626618-42626637 None:intergenic 30.0%
CTTCTATCATTAAGAAAGCA+TGG - chr1_3:42626620-42626639 None:intergenic 30.0%
CATGCTTTCTTAATGATAGA+AGG + chr1_3:42626618-42626637 Msa0119090:intron 30.0%
ATCATTCCCAAGAAATACAT+AGG - chr1_3:42626971-42626990 None:intergenic 30.0%
TCTTGGGAATGATGTTAATA+TGG + chr1_3:42626978-42626997 Msa0119090:intron 30.0%
CTTGGGAATGATGTTAATAT+GGG + chr1_3:42626979-42626998 Msa0119090:intron 30.0%
!! TTAATATGGGCACTTGTTTT+GGG + chr1_3:42626992-42627011 Msa0119090:intron 30.0%
GAAATGATGTATGTAAACTG+AGG + chr1_3:42627017-42627036 Msa0119090:intron 30.0%
GAACTTAATCAAACACGTAT+AGG + chr1_3:42627292-42627311 Msa0119090:three_prime_UTR 30.0%
!! ATGCTTTGAAGGTAAAAGAA+AGG - chr1_3:42627343-42627362 None:intergenic 30.0%
! TTCTTTTACCTTCAAAGCAT+TGG + chr1_3:42627343-42627362 Msa0119090:three_prime_UTR 30.0%
TGATACTTTAATGCTGTTAG+TGG + chr1_3:42627456-42627475 Msa0119090:three_prime_UTR 30.0%
GATACTTTAATGCTGTTAGT+GGG + chr1_3:42627457-42627476 Msa0119090:three_prime_UTR 30.0%
! CGACATTTTGTATTAATCGA+TGG + chr1_3:42627546-42627565 Msa0119090:three_prime_UTR 30.0%
! GATGTCTTTTACATAGCATT+TGG + chr1_3:42627594-42627613 Msa0119090:three_prime_UTR 30.0%
!! AGTGGAAAAGGTCTATTTTT+GGG + chr1_3:42627633-42627652 Msa0119090:three_prime_UTR 30.0%
! TTCTAGAAACTTGCTTCTGA+TGG + chr1_3:42623115-42623134 Msa0119090:CDS 35.0%
CATCTTTGACAAAAACAAGC+TGG - chr1_3:42623148-42623167 None:intergenic 35.0%
!! ACTTACATGTTTTGTTCCTC+CGG + chr1_3:42623398-42623417 Msa0119090:CDS 35.0%
! ATTAACAGCAAAGCTTTTGC+TGG + chr1_3:42623428-42623447 Msa0119090:CDS 35.0%
! TTAACAGCAAAGCTTTTGCT+GGG + chr1_3:42623429-42623448 Msa0119090:CDS 35.0%
TAACCCTCAATTGCATTTGA+TGG - chr1_3:42623647-42623666 None:intergenic 35.0%
!! GTGTTTCGAAAGTATCATTG+GGG + chr1_3:42624052-42624071 Msa0119090:CDS 35.0%
CATATTGGAGAAGCCAAAAA+GGG + chr1_3:42624116-42624135 Msa0119090:CDS 35.0%
! ACTTTATTGCCAACCCTTTT+TGG - chr1_3:42624132-42624151 None:intergenic 35.0%
! AAAAAGGGTTGGCAATAAAG+TGG + chr1_3:42624131-42624150 Msa0119090:CDS 35.0%
AAGTACCTCAACAAAAGAGA+AGG + chr1_3:42624212-42624231 Msa0119090:CDS 35.0%
!! TTTCTGAAATGGTAATCGAG+TGG - chr1_3:42624305-42624324 None:intergenic 35.0%
CAGAACAGAATGATTCTGAA+AGG + chr1_3:42624337-42624356 Msa0119090:CDS 35.0%
GAAATCGATACAACTCAAAG+AGG + chr1_3:42624359-42624378 Msa0119090:CDS 35.0%
GGCAGAATTTAAATTGGAAG+TGG - chr1_3:42624418-42624437 None:intergenic 35.0%
GATGAGAAAATCAACAGTTC+TGG + chr1_3:42624552-42624571 Msa0119090:CDS 35.0%
CTTTGTGCAGTGAAAGAATT+TGG + chr1_3:42624585-42624604 Msa0119090:CDS 35.0%
GGAAACATTAAAAAGGAGTC+TGG + chr1_3:42624606-42624625 Msa0119090:CDS 35.0%
CATCAATTACCAGCATCATT+GGG - chr1_3:42624747-42624766 None:intergenic 35.0%
ACATCAATTACCAGCATCAT+TGG - chr1_3:42624748-42624767 None:intergenic 35.0%
AAATCAAATTCGGAAACTCC+AGG - chr1_3:42624963-42624982 None:intergenic 35.0%
ACAGTCAAACTAAAACCTTC+TGG - chr1_3:42625020-42625039 None:intergenic 35.0%
TGATGTTATCCACGAAAAGA+AGG - chr1_3:42625171-42625190 None:intergenic 35.0%
GTGGATAACATCATCTTCTT+TGG + chr1_3:42625178-42625197 Msa0119090:CDS 35.0%
CTTTGGCATATATATATGGG+AGG + chr1_3:42625195-42625214 Msa0119090:CDS 35.0%
! TCTGTCAAGACAATTTTGCT+AGG - chr1_3:42625269-42625288 None:intergenic 35.0%
AGCAAAATTGTCTTGACAGA+TGG + chr1_3:42625269-42625288 Msa0119090:CDS 35.0%
GCTTGCTCTAATATATCTAC+GGG - chr1_3:42625380-42625399 None:intergenic 35.0%
CGCTTGCTCTAATATATCTA+CGG - chr1_3:42625381-42625400 None:intergenic 35.0%
AGATATATTAGAGCAAGCGA+TGG + chr1_3:42625382-42625401 Msa0119090:CDS 35.0%
!!! CTCTTCATTTTTTTGGAGAG+GGG - chr1_3:42625538-42625557 None:intergenic 35.0%
!!! GCTCTTCATTTTTTTGGAGA+GGG - chr1_3:42625539-42625558 None:intergenic 35.0%
!!! TGAGTGGCTCTTCATTTTTT+TGG - chr1_3:42625545-42625564 None:intergenic 35.0%
AGCCACTCATACACAAAATA+AGG + chr1_3:42625556-42625575 Msa0119090:intron 35.0%
CAACAAAGAGAATGTGCTAT+AGG - chr1_3:42625620-42625639 None:intergenic 35.0%
CTATAGCACATTCTCTTTGT+TGG + chr1_3:42625618-42625637 Msa0119090:intron 35.0%
TAGCATATGTGAAAAGGAAC+TGG + chr1_3:42625688-42625707 Msa0119090:intron 35.0%
! TGAAAAGGAACTGGTTTAGA+TGG + chr1_3:42625697-42625716 Msa0119090:intron 35.0%
! TGACTAGTTATGCACAATGT+TGG + chr1_3:42625809-42625828 Msa0119090:intron 35.0%
! ATACTCTGGTTTATAGGACA+AGG + chr1_3:42625920-42625939 Msa0119090:intron 35.0%
!!! GCCTTAAACCCATGATTTTT+TGG - chr1_3:42625975-42625994 None:intergenic 35.0%
GTCATGTATGAGATAAGAGT+AGG - chr1_3:42626222-42626241 None:intergenic 35.0%
GATTGCTACCATAGTAATGT+GGG - chr1_3:42626310-42626329 None:intergenic 35.0%
AGATTGCTACCATAGTAATG+TGG - chr1_3:42626311-42626330 None:intergenic 35.0%
CTTAATGATAGAAGGTTGCA+TGG + chr1_3:42626626-42626645 Msa0119090:intron 35.0%
TTTGTTAAGTTTGGAGGTGA+AGG - chr1_3:42626723-42626742 None:intergenic 35.0%
!!! GCGGATTTTTAGTTAAAGTG+AGG + chr1_3:42626848-42626867 Msa0119090:intron 35.0%
TTCCCAAGAAATACATAGGT+GGG - chr1_3:42626967-42626986 None:intergenic 35.0%
ATTCCCAAGAAATACATAGG+TGG - chr1_3:42626968-42626987 None:intergenic 35.0%
! GTTAATATGGGCACTTGTTT+TGG + chr1_3:42626991-42627010 Msa0119090:intron 35.0%
! AAGCTTTTGCCCATTTATGA+TGG - chr1_3:42627272-42627291 None:intergenic 35.0%
ATCCAATTATAAGTACACCG+TGG + chr1_3:42627399-42627418 Msa0119090:three_prime_UTR 35.0%
TGTGAAAATGACAGTGGAAA+AGG + chr1_3:42627621-42627640 Msa0119090:three_prime_UTR 35.0%
! CAGTGGAAAAGGTCTATTTT+TGG + chr1_3:42627632-42627651 Msa0119090:three_prime_UTR 35.0%
!!! GTGGAAAAGGTCTATTTTTG+GGG + chr1_3:42627634-42627653 Msa0119090:three_prime_UTR 35.0%
TCTTTGGATACCATCAAGGA+GGG - chr1_3:42623192-42623211 None:intergenic 40.0%
CTTCTCTTTGGATACCATCA+AGG - chr1_3:42623196-42623215 None:intergenic 40.0%
ATACCCACACAAATTAGCGA+TGG - chr1_3:42623285-42623304 None:intergenic 40.0%
! GATTTCATTGAAGGAGCACA+AGG + chr1_3:42623358-42623377 Msa0119090:CDS 40.0%
GAACATTGTTCAGTTTCTCC+AGG - chr1_3:42623487-42623506 None:intergenic 40.0%
! TGGCAGTTTCTGTTTTATCC+TGG - chr1_3:42623592-42623611 None:intergenic 40.0%
TGGACCATCAAATGCAATTG+AGG + chr1_3:42623640-42623659 Msa0119090:CDS 40.0%
GGACCATCAAATGCAATTGA+GGG + chr1_3:42623641-42623660 Msa0119090:CDS 40.0%
!! AGGACCTAAGTTCTGAGAAA+TGG + chr1_3:42623873-42623892 Msa0119090:intron 40.0%
AATTAAGCCGCCATCCATAT+TGG + chr1_3:42624101-42624120 Msa0119090:CDS 40.0%
! TTTGGCTTCTCCAATATGGA+TGG - chr1_3:42624114-42624133 None:intergenic 40.0%
!!! CCTTTTTGGCTTCTCCAATA+TGG - chr1_3:42624118-42624137 None:intergenic 40.0%
CCATATTGGAGAAGCCAAAA+AGG + chr1_3:42624115-42624134 Msa0119090:CDS 40.0%
TTCAACAGAAGGATCATGAG+AGG - chr1_3:42624271-42624290 None:intergenic 40.0%
CATTAAAAAGGAGTCTGGTG+TGG + chr1_3:42624611-42624630 Msa0119090:CDS 40.0%
CAATGCATCTTGTGCAGTAT+CGG + chr1_3:42624827-42624846 Msa0119090:intron 40.0%
GTACTTTCCTCAACAGCATT+GGG - chr1_3:42624882-42624901 None:intergenic 40.0%
AGTACTTTCCTCAACAGCAT+TGG - chr1_3:42624883-42624902 None:intergenic 40.0%
GTCAAACTAAAACCTTCTGG+TGG - chr1_3:42625017-42625036 None:intergenic 40.0%
GTGACAACTGGAAGAAAGTT+CGG - chr1_3:42625127-42625146 None:intergenic 40.0%
TAGTAGCAAAAGGTGACAAC+TGG - chr1_3:42625139-42625158 None:intergenic 40.0%
! TGTCACCTTTTGCTACTATG+TGG + chr1_3:42625141-42625160 Msa0119090:CDS 40.0%
GCATTCCACATAGTAGCAAA+AGG - chr1_3:42625149-42625168 None:intergenic 40.0%
GAGGGGTCACAAACATAATA+GGG - chr1_3:42625521-42625540 None:intergenic 40.0%
AGAGGGGTCACAAACATAAT+AGG - chr1_3:42625522-42625541 None:intergenic 40.0%
!!! GGCTCTTCATTTTTTTGGAG+AGG - chr1_3:42625540-42625559 None:intergenic 40.0%
AATGGTTGCCAATGTGGTAT+GGG - chr1_3:42625888-42625907 None:intergenic 40.0%
AAATGGTTGCCAATGTGGTA+TGG - chr1_3:42625889-42625908 None:intergenic 40.0%
CAAAGAAATGGTTGCCAATG+TGG - chr1_3:42625894-42625913 None:intergenic 40.0%
!! TTTCTTTTAGGTACGCTTGC+TGG + chr1_3:42626098-42626117 Msa0119090:intron 40.0%
CACTGTTTCATTCTGAATGC+TGG - chr1_3:42626150-42626169 None:intergenic 40.0%
CAGCATTCAGAATGAAACAG+TGG + chr1_3:42626148-42626167 Msa0119090:CDS 40.0%
!! TTATCTCATACATGACGGAC+AGG + chr1_3:42626226-42626245 Msa0119090:CDS 40.0%
ATGGTGCAGCTAAGTTATGT+GGG - chr1_3:42626753-42626772 None:intergenic 40.0%
AAATACATAGGTGGGGAAAG+TGG - chr1_3:42626959-42626978 None:intergenic 40.0%
TTCCCCACCTATGTATTTCT+TGG + chr1_3:42626961-42626980 Msa0119090:intron 40.0%
TCCCCACCTATGTATTTCTT+GGG + chr1_3:42626962-42626981 Msa0119090:intron 40.0%
TCCCAAGAAATACATAGGTG+GGG - chr1_3:42626966-42626985 None:intergenic 40.0%
GTTAACCATTGTTCTGGTGT+TGG + chr1_3:42627115-42627134 Msa0119090:intron 40.0%
! GTTCTGAGTGGTTCACAAAT+AGG + chr1_3:42627151-42627170 Msa0119090:CDS 40.0%
!! GGAAGAGTATGACGTTTTGA+AGG + chr1_3:42627177-42627196 Msa0119090:CDS 40.0%
AAGGATTTCGTTGTACCACT+TGG + chr1_3:42627196-42627215 Msa0119090:CDS 40.0%
! CCACTTTGAGAAGAGAAATG+AGG - chr1_3:42627229-42627248 None:intergenic 40.0%
CCTCATTTCTCTTCTCAAAG+TGG + chr1_3:42627226-42627245 Msa0119090:CDS 40.0%
TCAACACTCCAATGCTTTGA+AGG - chr1_3:42627354-42627373 None:intergenic 40.0%
GGCATATGTGAAAATGACAG+TGG + chr1_3:42627615-42627634 Msa0119090:three_prime_UTR 40.0%
CTCTTTGGATACCATCAAGG+AGG - chr1_3:42623193-42623212 None:intergenic 45.0%
!! CAAACAGCTGGTCTTCTCTT+TGG - chr1_3:42623208-42623227 None:intergenic 45.0%
! AGGTCCATCGCTAATTTGTG+TGG + chr1_3:42623278-42623297 Msa0119090:CDS 45.0%
! GGTCCATCGCTAATTTGTGT+GGG + chr1_3:42623279-42623298 Msa0119090:CDS 45.0%
!! GATCAGTTGGCAAAGCATTG+CGG - chr1_3:42623316-42623335 None:intergenic 45.0%
GCTGTTAATTACACAACCGG+AGG - chr1_3:42623417-42623436 None:intergenic 45.0%
!! GAGGTGCAATGTTTTAGACC+TGG + chr1_3:42623466-42623485 Msa0119090:CDS 45.0%
!! AGAGGTGTCTTTGGAACAGT+GGG + chr1_3:42623616-42623635 Msa0119090:CDS 45.0%
TTGGGGCAAACAGATACAAC+TGG + chr1_3:42624069-42624088 Msa0119090:CDS 45.0%
TTGGAGAAGCCAAAAAGGGT+TGG + chr1_3:42624120-42624139 Msa0119090:CDS 45.0%
AACTCAGTCGCTCTGTTACT+TGG + chr1_3:42624526-42624545 Msa0119090:CDS 45.0%
! ACTCAGTCGCTCTGTTACTT+GGG + chr1_3:42624527-42624546 Msa0119090:CDS 45.0%
AAGCAACTGCTTCTGATGCT+TGG - chr1_3:42624710-42624729 None:intergenic 45.0%
CGATACTGCACAAGATGCAT+TGG - chr1_3:42624829-42624848 None:intergenic 45.0%
!! TGCTGTTGAGGAAAGTACTG+TGG + chr1_3:42624884-42624903 Msa0119090:CDS 45.0%
CTGAAATGGCCAAAGAAACC+TGG + chr1_3:42624942-42624961 Msa0119090:CDS 45.0%
TCGGAAACTCCAGGTTTCTT+TGG - chr1_3:42624954-42624973 None:intergenic 45.0%
! TGTTTGACTCTGAAGACACG+TGG + chr1_3:42624982-42625001 Msa0119090:CDS 45.0%
! TGTGGAATGCCTTCTTTTCG+TGG + chr1_3:42625159-42625178 Msa0119090:CDS 45.0%
! CTGGAATTTGCTTCCTGCAA+AGG + chr1_3:42625838-42625857 Msa0119090:intron 45.0%
CTTCCTGCAAAGGCAAGATA+AGG + chr1_3:42625848-42625867 Msa0119090:intron 45.0%
CAACCTTATCTTGCCTTTGC+AGG - chr1_3:42625854-42625873 None:intergenic 45.0%
CTGCAAAGGCAAGATAAGGT+TGG + chr1_3:42625852-42625871 Msa0119090:intron 45.0%
GCTATTGACCCATACCACAT+TGG + chr1_3:42625877-42625896 Msa0119090:intron 45.0%
TAAGGCTGTCTGTTGCAGTT+AGG + chr1_3:42625989-42626008 Msa0119090:intron 45.0%
! GCTGGATACAATGTCGTTTG+TGG + chr1_3:42626116-42626135 Msa0119090:CDS 45.0%
CAGAATGAAACAGTGGCAAG+TGG + chr1_3:42626155-42626174 Msa0119090:CDS 45.0%
ATGGGGCAGCTAAGTTATGT+GGG - chr1_3:42626601-42626620 None:intergenic 45.0%
CATGGTGCAGCTAAGTTATG+TGG - chr1_3:42626754-42626773 None:intergenic 45.0%
!!! ATATGGGCACTTGTTTTGGG+TGG + chr1_3:42626995-42627014 Msa0119090:intron 45.0%
CCAAACCAACACCAGAACAA+TGG - chr1_3:42627123-42627142 None:intergenic 45.0%
!! CCATTGTTCTGGTGTTGGTT+TGG + chr1_3:42627120-42627139 Msa0119090:intron 45.0%
GAGTGGTTCACAAATAGGCA+AGG + chr1_3:42627156-42627175 Msa0119090:CDS 45.0%
GGCCACGGTGTACTTATAAT+TGG - chr1_3:42627404-42627423 None:intergenic 45.0%
ATTGGATTCCTCTGTCGCTA+GGG - chr1_3:42627426-42627445 None:intergenic 45.0%
AATTGGATTCCTCTGTCGCT+AGG - chr1_3:42627427-42627446 None:intergenic 45.0%
TTGCAATTGGCCCTCCTTGA+TGG + chr1_3:42623179-42623198 Msa0119090:CDS 50.0%
CTTTGCCAACTGATCGTCCT+CGG + chr1_3:42623321-42623340 Msa0119090:CDS 50.0%
GTCCTCGGAAGGGTAGATAT+CGG + chr1_3:42623336-42623355 Msa0119090:CDS 50.0%
ATCCGATATCTACCCTTCCG+AGG - chr1_3:42623341-42623360 None:intergenic 50.0%
CATTGCACCTCTCATCTTGC+AGG - chr1_3:42623457-42623476 None:intergenic 50.0%
AACAGAAACTGCCACTGCAG+AGG + chr1_3:42623598-42623617 Msa0119090:CDS 50.0%
TTCCAAAGACACCTCTGCAG+TGG - chr1_3:42623612-42623631 None:intergenic 50.0%
!! CAGAGGTGTCTTTGGAACAG+TGG + chr1_3:42623615-42623634 Msa0119090:CDS 50.0%
CACAATCGGCAGTGGGAAAA+TGG - chr1_3:42623928-42623947 None:intergenic 50.0%
!! CGACTTGCCACGATTAGCTT+TGG - chr1_3:42623962-42623981 None:intergenic 50.0%
GGCTTCTCCAATATGGATGG+CGG - chr1_3:42624111-42624130 None:intergenic 50.0%
! GGGTTGGCAATAAAGTGGTC+AGG + chr1_3:42624136-42624155 Msa0119090:CDS 50.0%
TGCTTCTGATGCTTGGCTCA+AGG - chr1_3:42624703-42624722 None:intergenic 50.0%
GCATCAGAAGCAGTTGCTTC+TGG + chr1_3:42624711-42624730 Msa0119090:CDS 50.0%
! AGCAGTTGCTTCTGGAGACT+CGG + chr1_3:42624719-42624738 Msa0119090:CDS 50.0%
! TCTTGTGCAGTATCGGAAGC+AGG + chr1_3:42624834-42624853 Msa0119090:intron 50.0%
! TCAACAGCATTGGGAGGATG+TGG - chr1_3:42624873-42624892 None:intergenic 50.0%
ACATCCTCCCAATGCTGTTG+AGG + chr1_3:42624872-42624891 Msa0119090:CDS 50.0%
! CTTTCCTCAACAGCATTGGG+AGG - chr1_3:42624879-42624898 None:intergenic 50.0%
TGGTTTGATGCTCCACCAGA+AGG + chr1_3:42625002-42625021 Msa0119090:CDS 50.0%
CTGAGCTCTTCAACAACAGC+AGG - chr1_3:42625347-42625366 None:intergenic 50.0%
CTGCTGTTGTTGAAGAGCTC+AGG + chr1_3:42625345-42625364 Msa0119090:CDS 50.0%
TGCACAATGTTGGCGAGTTC+TGG + chr1_3:42625819-42625838 Msa0119090:intron 50.0%
!! TCTCATACATGACGGACAGG+AGG + chr1_3:42626229-42626248 Msa0119090:CDS 50.0%
!! CTCATACATGACGGACAGGA+GGG + chr1_3:42626230-42626249 Msa0119090:CDS 50.0%
! CAGGAGGGACTTGTTTCTCA+AGG + chr1_3:42626245-42626264 Msa0119090:CDS 50.0%
TGGGGCAGCTAAGTTATGTG+GGG - chr1_3:42626600-42626619 None:intergenic 50.0%
CATGGGGCAGCTAAGTTATG+TGG - chr1_3:42626602-42626621 None:intergenic 50.0%
AGGGATCAAGCGTGTTTGTC+AGG - chr1_3:42626656-42626675 None:intergenic 50.0%
!! TGGTGTTGGTTTGGTGAAGC+AGG + chr1_3:42627129-42627148 Msa0119090:intron 50.0%
!! TTGGTGAAGCAGGTTCTGAG+TGG + chr1_3:42627139-42627158 Msa0119090:intron 50.0%
! AAATGAGGTGCTCGACCAAG+TGG - chr1_3:42627214-42627233 None:intergenic 50.0%
TTGGATTCCTCTGTCGCTAG+GGG - chr1_3:42627425-42627444 None:intergenic 50.0%
GAAGACCAGCTGTTTGCAGC+TGG + chr1_3:42623212-42623231 Msa0119090:CDS 55.0%
CAGATCCAGCTGCAAACAGC+TGG - chr1_3:42623220-42623239 None:intergenic 55.0%
!! GGCAAAGCATTGCGGCACAA+TGG - chr1_3:42623308-42623327 None:intergenic 55.0%
CCAACTGATCGTCCTCGGAA+GGG + chr1_3:42623326-42623345 Msa0119090:CDS 55.0%
!! TGCCACTGCAGAGGTGTCTT+TGG + chr1_3:42623607-42623626 Msa0119090:CDS 55.0%
!! GTGTCTTTGGAACAGTGGGC+TGG + chr1_3:42623620-42623639 Msa0119090:CDS 55.0%
TGCAACGCACAATCGGCAGT+GGG - chr1_3:42623935-42623954 None:intergenic 55.0%
! ACTGCCGATTGTGCGTTGCA+GGG + chr1_3:42623935-42623954 Msa0119090:intron 55.0%
TGGACCCTGCAACGCACAAT+CGG - chr1_3:42623942-42623961 None:intergenic 55.0%
GCAGGGTCCAAAGCTAATCG+TGG + chr1_3:42623952-42623971 Msa0119090:intron 55.0%
GACTCGGATCCCAATGATGC+TGG + chr1_3:42624735-42624754 Msa0119090:CDS 55.0%
GCCAACTGATCGTCCTCGGA+AGG + chr1_3:42623325-42623344 Msa0119090:CDS 60.0%
CCCTTCCGAGGACGATCAGT+TGG - chr1_3:42623329-42623348 None:intergenic 60.0%
CTGGGAGCCTGCAAGATGAG+AGG + chr1_3:42623447-42623466 Msa0119090:CDS 60.0%
CTGCAACGCACAATCGGCAG+TGG - chr1_3:42623936-42623955 None:intergenic 60.0%
! CACTGCCGATTGTGCGTTGC+AGG + chr1_3:42623934-42623953 Msa0119090:intron 60.0%
TCCTCTGTCGCTAGGGGCCA+CGG - chr1_3:42627419-42627438 None:intergenic 65.0%
ACCGTGGCCCCTAGCGACAG+AGG + chr1_3:42627415-42627434 Msa0119090:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 42623074 42627695 42623074 ID=Msa0119090;Name=Msa0119090
chr1_3 mRNA 42623074 42627695 42623074 ID=Msa0119090-mRNA-1;Parent=Msa0119090;Name=Msa0119090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.83|1|1|1|6|440|723
chr1_3 exon 42623074 42623722 42623074 ID=Msa0119090-mRNA-1:exon:12833;Parent=Msa0119090-mRNA-1
chr1_3 exon 42623956 42624756 42623956 ID=Msa0119090-mRNA-1:exon:12834;Parent=Msa0119090-mRNA-1
chr1_3 exon 42624844 42625037 42624844 ID=Msa0119090-mRNA-1:exon:12835;Parent=Msa0119090-mRNA-1
chr1_3 exon 42625140 42625403 42625140 ID=Msa0119090-mRNA-1:exon:12836;Parent=Msa0119090-mRNA-1
chr1_3 exon 42626108 42626266 42626108 ID=Msa0119090-mRNA-1:exon:12837;Parent=Msa0119090-mRNA-1
chr1_3 exon 42627151 42627695 42627151 ID=Msa0119090-mRNA-1:exon:12838;Parent=Msa0119090-mRNA-1
chr1_3 CDS 42623074 42623722 42623074 ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1
chr1_3 CDS 42623956 42624756 42623956 ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1
chr1_3 CDS 42624844 42625037 42624844 ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1
chr1_3 CDS 42625140 42625403 42625140 ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1
chr1_3 CDS 42626108 42626266 42626108 ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1
chr1_3 CDS 42627151 42627255 42627151 ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1
chr1_3 three_prime_UTR 42627256 42627695 42627256 ID=Msa0119090-mRNA-1:three_prime_utr;Parent=Msa0119090-mRNA-1
Gene Sequence

>Msa0119090

ATGTTAAAACTTATTGTGAAGTTCTTTGTGCCTTATGCTATTTCTAGAAACTTGCTTCTGATGGAGAAGAACCAGCTTGTTTTTGTCAAAGATGCTGTTTTGAAATTGCAATTGGCCCTCCTTGATGGTATCCAAAGAGAAGACCAGCTGTTTGCAGCTGGATCTGTGATATCAAAGAGTGACTATGAAGATGTTGTAACTGAAAGGTCCATCGCTAATTTGTGTGGGTATCCATTGTGCCGCAATGCTTTGCCAACTGATCGTCCTCGGAAGGGTAGATATCGGATTTCATTGAAGGAGCACAAGGTGTATGACCTACACGAAACTTACATGTTTTGTTCCTCCGGTTGTGTAATTAACAGCAAAGCTTTTGCTGGGAGCCTGCAAGATGAGAGGTGCAATGTTTTAGACCTGGAGAAACTGAACAATGTTCTTAGGTTGTTTGGAAATTTGAACTTGGAACCAATGGAAAATTTTGGAAAGGATGGAGAATTCGATTTTTCTGACTTGAAAATCCAGGATAAAACAGAAACTGCCACTGCAGAGGTGTCTTTGGAACAGTGGGCTGGACCATCAAATGCAATTGAGGGTTATGTACCAAAACAAAGAGACAATGATTCTAAGGCTTCTAAGAAAAATGCTAAAAAAGGGTCCAAAGCTAATCGTGGCAAGTCGAATGATTATAAAAGTTTAATTGGCAGTGAGTTTGACTTCACGAGTACAATAATTACACAAGATGAGTATAGTGTTTCGAAAGTATCATTGGGGCAAACAGATACAACTGGTGATCATCAAATTAAGCCGCCATCCATATTGGAGAAGCCAAAAAGGGTTGGCAATAAAGTGGTCAGGAAAGATGAAAATATACAAGATCTTTCTTCATCTTTTGAGTGTACTGTAAATTTAAGTACCTCAACAAAAGAGAAGGAAATAGCGAATTCATGTAAAGATGTTCTCAAATCCTCTCATGATCCTTCTGTTGAAAAGAAAGTTGTCCACTCGATTACCATTTCAGAAAGAGAATGTGATGCAGAACAGAATGATTCTGAAAGGAAATCGATACAACTCAAAGAGGAAAACAGTATAGTTGCTGCTAACGATGATGCTTCCACTTCCAATTTAAATTCTGCCAATGTTGAAGAGAAATTCCTAATTGAACAAGCAATTGAATCATGCCATACTAAACCAAAATCTTCTCTTAAATCTAACGGTAAAAAGAAACTCAGTCGCTCTGTTACTTGGGCTGATGAGAAAATCAACAGTTCTGGGAGTAAAGATCTTTGTGCAGTGAAAGAATTTGGAAACATTAAAAAGGAGTCTGGTGTGGCTGATAACGTAGATTCTGCTGATGAAGATATGTTACGTTGCACATTAGCAGAAGCTTGTGCAATTGCCTTGAGCCAAGCATCAGAAGCAGTTGCTTCTGGAGACTCGGATCCCAATGATGCTGTATCGGAAGCAGGAATCACTATACTGCCACATCCTCCCAATGCTGTTGAGGAAAGTACTGTGGACGATGATGACATTCTAGAAAAAAATTCAGTTACTCTGAAATGGCCAAAGAAACCTGGAGTTTCCGAATTTGATTTGTTTGACTCTGAAGACACGTGGTTTGATGCTCCACCAGAAGGTTTTAGTTTGACTTTGTCACCTTTTGCTACTATGTGGAATGCCTTCTTTTCGTGGATAACATCATCTTCTTTGGCATATATATATGGGAGGGATGTAAGTTTTCATGAAGAATTTCTATCAGTTAATGGGAGAGAATATCCTAGCAAAATTGTCTTGACAGATGGTCGTTCATCTGAAATAAAACAAACATTAGTTGGTTGTCTTGCTCGAGCTTTACCTGCTGTTGTTGAAGAGCTCAGGTTGCCAATACCCGTAGATATATTAGAGCAAGCGATGGTACGCTTGCTGGATACAATGTCGTTTGTGGAAGCACTACCAGCATTCAGAATGAAACAGTGGCAAGTGGTTGTTCTCTTGATCATTGATGCATTGTCTGTTTCTAGAGTGCCTACTCTTATCTCATACATGACGGACAGGAGGGACTTGTTTCTCAAGGTTCTGAGTGGTTCACAAATAGGCAAGGAAGAGTATGACGTTTTGAAGGATTTCGTTGTACCACTTGGTCGAGCACCTCATTTCTCTTCTCAAAGTGGAGCTTGA

Protein sequence

>Msa0119090

MLKLIVKFFVPYAISRNLLLMEKNQLVFVKDAVLKLQLALLDGIQREDQLFAAGSVISKSDYEDVVTERSIANLCGYPLCRNALPTDRPRKGRYRISLKEHKVYDLHETYMFCSSGCVINSKAFAGSLQDERCNVLDLEKLNNVLRLFGNLNLEPMENFGKDGEFDFSDLKIQDKTETATAEVSLEQWAGPSNAIEGYVPKQRDNDSKASKKNAKKGSKANRGKSNDYKSLIGSEFDFTSTIITQDEYSVSKVSLGQTDTTGDHQIKPPSILEKPKRVGNKVVRKDENIQDLSSSFECTVNLSTSTKEKEIANSCKDVLKSSHDPSVEKKVVHSITISERECDAEQNDSERKSIQLKEENSIVAANDDASTSNLNSANVEEKFLIEQAIESCHTKPKSSLKSNGKKKLSRSVTWADEKINSSGSKDLCAVKEFGNIKKESGVADNVDSADEDMLRCTLAEACAIALSQASEAVASGDSDPNDAVSEAGITILPHPPNAVEESTVDDDDILEKNSVTLKWPKKPGVSEFDLFDSEDTWFDAPPEGFSLTLSPFATMWNAFFSWITSSSLAYIYGRDVSFHEEFLSVNGREYPSKIVLTDGRSSEIKQTLVGCLARALPAVVEELRLPIPVDILEQAMVRLLDTMSFVEALPAFRMKQWQVVVLLIIDALSVSRVPTLISYMTDRRDLFLKVLSGSQIGKEEYDVLKDFVVPLGRAPHFSSQSGA*