Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0119090 | sp|F4K1B1|RPAP2_ARATH | 41.261 | 761 | 364 | 14 | 20 | 723 | 1 | 735 | 1.58e-171 | 512 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0119090 | A0A072VJQ7 | 93.750 | 704 | 41 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1345 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002560 | Msa0119090 | 0.816410 | 5.609729e-52 | -8.615850e-47 |
Msa0003220 | Msa0119090 | 0.803595 | 3.233870e-49 | -8.615850e-47 |
Msa0005620 | Msa0119090 | 0.810079 | 1.377650e-50 | -8.615850e-47 |
Msa0010770 | Msa0119090 | 0.811166 | 8.020784e-51 | -8.615850e-47 |
Msa0012710 | Msa0119090 | 0.823275 | 1.511940e-53 | -8.615850e-47 |
Msa0015090 | Msa0119090 | 0.803837 | 2.880901e-49 | -8.615850e-47 |
Msa0023330 | Msa0119090 | 0.867927 | 9.536975e-66 | -8.615850e-47 |
Msa0030300 | Msa0119090 | 0.802845 | 4.624761e-49 | -8.615850e-47 |
Msa0031180 | Msa0119090 | 0.850539 | 1.590695e-60 | -8.615850e-47 |
Msa0034180 | Msa0119090 | 0.800992 | 1.110970e-48 | -8.615850e-47 |
Msa0037120 | Msa0119090 | 0.848247 | 6.922690e-60 | -8.615850e-47 |
Msa0043500 | Msa0119090 | 0.840951 | 6.381903e-58 | -8.615850e-47 |
Msa0043650 | Msa0119090 | 0.838475 | 2.813770e-57 | -8.615850e-47 |
Msa0045340 | Msa0119090 | 0.838351 | 3.028421e-57 | -8.615850e-47 |
Msa0049750 | Msa0119090 | 0.804666 | 1.936314e-49 | -8.615850e-47 |
Msa0051210 | Msa0119090 | 0.807032 | 6.160812e-50 | -8.615850e-47 |
Msa0051450 | Msa0119090 | 0.813208 | 2.875802e-51 | -8.615850e-47 |
Msa0053760 | Msa0119090 | 0.804974 | 1.669229e-49 | -8.615850e-47 |
Msa0054820 | Msa0119090 | 0.858775 | 6.536841e-63 | -8.615850e-47 |
Msa0056450 | Msa0119090 | 0.812486 | 4.138861e-51 | -8.615850e-47 |
Msa0058600 | Msa0119090 | 0.802777 | 4.776756e-49 | -8.615850e-47 |
Msa0058610 | Msa0119090 | 0.815462 | 9.131079e-52 | -8.615850e-47 |
Msa0059890 | Msa0119090 | 0.808288 | 3.334361e-50 | -8.615850e-47 |
Msa0064920 | Msa0119090 | 0.839715 | 1.342252e-57 | -8.615850e-47 |
Msa0071090 | Msa0119090 | 0.983611 | 3.230181e-158 | -8.615850e-47 |
Msa0078480 | Msa0119090 | 0.850135 | 2.065424e-60 | -8.615850e-47 |
Msa0079130 | Msa0119090 | 0.809807 | 1.576524e-50 | -8.615850e-47 |
Msa0079720 | Msa0119090 | 0.808798 | 2.594454e-50 | -8.615850e-47 |
Msa0081900 | Msa0119090 | 0.800614 | 1.326882e-48 | -8.615850e-47 |
Msa0084340 | Msa0119090 | 0.843917 | 1.043365e-58 | -8.615850e-47 |
Msa0089980 | Msa0119090 | 0.806041 | 9.971881e-50 | -8.615850e-47 |
Msa0090010 | Msa0119090 | 0.800386 | 1.476683e-48 | -8.615850e-47 |
Msa0096580 | Msa0119090 | 0.803677 | 3.109837e-49 | -8.615850e-47 |
Msa0099620 | Msa0119090 | 0.802562 | 5.288214e-49 | -8.615850e-47 |
Msa0099650 | Msa0119090 | 0.823621 | 1.255349e-53 | -8.615850e-47 |
Msa0100160 | Msa0119090 | 0.836808 | 7.529959e-57 | -8.615850e-47 |
Msa0101830 | Msa0119090 | 0.808177 | 3.520171e-50 | -8.615850e-47 |
Msa0102140 | Msa0119090 | 0.803350 | 3.636048e-49 | -8.615850e-47 |
Msa0115560 | Msa0119090 | 0.828310 | 9.654943e-55 | -8.615850e-47 |
Msa0117520 | Msa0119090 | 0.811912 | 5.522857e-51 | -8.615850e-47 |
Msa0119090 | Msa0124320 | 0.807790 | 4.254424e-50 | -8.615850e-47 |
Msa0119090 | Msa0126190 | 0.824500 | 7.806109e-54 | -8.615850e-47 |
Msa0119090 | Msa0126790 | 0.853502 | 2.289855e-61 | -8.615850e-47 |
Msa0119090 | Msa0128180 | 0.803253 | 3.808127e-49 | -8.615850e-47 |
Msa0119090 | Msa0130850 | 0.804701 | 1.903772e-49 | -8.615850e-47 |
Msa0119090 | Msa0131290 | 0.848414 | 6.222430e-60 | -8.615850e-47 |
Msa0119090 | Msa0138020 | 0.822871 | 1.878210e-53 | -8.615850e-47 |
Msa0119090 | Msa0138210 | 0.823956 | 1.047779e-53 | -8.615850e-47 |
Msa0119090 | Msa0143850 | 0.837729 | 4.377048e-57 | -8.615850e-47 |
Msa0119090 | Msa0144530 | 0.803404 | 3.543775e-49 | -8.615850e-47 |
Msa0119090 | Msa0149890 | 0.801132 | 1.040212e-48 | -8.615850e-47 |
Msa0119090 | Msa0152560 | 0.806539 | 7.830215e-50 | -8.615850e-47 |
Msa0119090 | Msa0160960 | 0.800879 | 1.171604e-48 | -8.615850e-47 |
Msa0119090 | Msa0162430 | 0.993180 | 5.530068e-198 | -8.615850e-47 |
Msa0119090 | Msa0171120 | 0.805366 | 1.382054e-49 | -8.615850e-47 |
Msa0119090 | Msa0171200 | 0.839026 | 2.026210e-57 | -8.615850e-47 |
Msa0119090 | Msa0171870 | 0.841606 | 4.292176e-58 | -8.615850e-47 |
Msa0119090 | Msa0174360 | 0.809866 | 1.530967e-50 | -8.615850e-47 |
Msa0119090 | Msa0177170 | 0.835056 | 2.094622e-56 | -8.615850e-47 |
Msa0119090 | Msa0178570 | 0.834675 | 2.612957e-56 | -8.615850e-47 |
Msa0119090 | Msa0183420 | 0.816917 | 4.319704e-52 | -8.615850e-47 |
Msa0119090 | Msa0189710 | 0.804156 | 2.473318e-49 | -8.615850e-47 |
Msa0119090 | Msa0202730 | 0.829018 | 6.507807e-55 | -8.615850e-47 |
Msa0119090 | Msa0206330 | 0.840099 | 1.065961e-57 | -8.615850e-47 |
Msa0119090 | Msa0207030 | 0.802090 | 6.615527e-49 | -8.615850e-47 |
Msa0119090 | Msa0210260 | 0.808661 | 2.775791e-50 | -8.615850e-47 |
Msa0119090 | Msa0218350 | 0.821914 | 3.133655e-53 | -8.615850e-47 |
Msa0119090 | Msa0218370 | 0.810631 | 1.047365e-50 | -8.615850e-47 |
Msa0119090 | Msa0223330 | 0.803366 | 3.607763e-49 | -8.615850e-47 |
Msa0119090 | Msa0223340 | 0.801743 | 7.797880e-49 | -8.615850e-47 |
Msa0119090 | Msa0225220 | 0.814947 | 1.188562e-51 | -8.615850e-47 |
Msa0119090 | Msa0227190 | 0.805915 | 1.059900e-49 | -8.615850e-47 |
Msa0119090 | Msa0231190 | 0.805784 | 1.129254e-49 | -8.615850e-47 |
Msa0119090 | Msa0232020 | 0.822752 | 2.002653e-53 | -8.615850e-47 |
Msa0119090 | Msa0233370 | 0.841326 | 5.085344e-58 | -8.615850e-47 |
Msa0119090 | Msa0236420 | 0.802736 | 4.869145e-49 | -8.615850e-47 |
Msa0119090 | Msa0237200 | 0.833748 | 4.462666e-56 | -8.615850e-47 |
Msa0119090 | Msa0237210 | 0.814297 | 1.655371e-51 | -8.615850e-47 |
Msa0119090 | Msa0240300 | 0.803703 | 3.071685e-49 | -8.615850e-47 |
Msa0119090 | Msa0241140 | 0.833310 | 5.740885e-56 | -8.615850e-47 |
Msa0119090 | Msa0244970 | 0.804812 | 1.804972e-49 | -8.615850e-47 |
Msa0119090 | Msa0245860 | 0.828886 | 7.004420e-55 | -8.615850e-47 |
Msa0119090 | Msa0249310 | 0.872629 | 2.746755e-67 | -8.615850e-47 |
Msa0119090 | Msa0265150 | 0.815264 | 1.010536e-51 | -8.615850e-47 |
Msa0119090 | Msa0270960 | 0.803568 | 3.276948e-49 | -8.615850e-47 |
Msa0119090 | Msa0271550 | 0.808385 | 3.178820e-50 | -8.615850e-47 |
Msa0119090 | Msa0271790 | 0.823808 | 1.134530e-53 | -8.615850e-47 |
Msa0119090 | Msa0274970 | 0.836373 | 9.723045e-57 | -8.615850e-47 |
Msa0119090 | Msa0280110 | 0.829623 | 4.640725e-55 | -8.615850e-47 |
Msa0119090 | Msa0280150 | 0.825462 | 4.626703e-54 | -8.615850e-47 |
Msa0119090 | Msa0287790 | 0.872678 | 2.644863e-67 | -8.615850e-47 |
Msa0119090 | Msa0307310 | 0.828481 | 8.778430e-55 | -8.615850e-47 |
Msa0119090 | Msa0308440 | 0.884179 | 2.391487e-71 | -8.615850e-47 |
Msa0119090 | Msa0308560 | 0.834090 | 3.663331e-56 | -8.615850e-47 |
Msa0119090 | Msa0310090 | 0.803997 | 2.668631e-49 | -8.615850e-47 |
Msa0119090 | Msa0310430 | 0.803502 | 3.381035e-49 | -8.615850e-47 |
Msa0119090 | Msa0311720 | 0.829854 | 4.078322e-55 | -8.615850e-47 |
Msa0119090 | Msa0315680 | 0.842290 | 2.831046e-58 | -8.615850e-47 |
Msa0119090 | Msa0315690 | 0.807619 | 4.626255e-50 | -8.615850e-47 |
Msa0119090 | Msa0320800 | 0.821706 | 3.500572e-53 | -8.615850e-47 |
Msa0119090 | Msa0324240 | 0.822697 | 2.061626e-53 | -8.615850e-47 |
Msa0119090 | Msa0324890 | 0.822981 | 1.770967e-53 | -8.615850e-47 |
Msa0119090 | Msa0328390 | 0.810559 | 1.085455e-50 | -8.615850e-47 |
Msa0119090 | Msa0339910 | 0.821736 | 3.444676e-53 | -8.615850e-47 |
Msa0119090 | Msa0341840 | 0.814862 | 1.240895e-51 | -8.615850e-47 |
Msa0119090 | Msa0342010 | 0.815269 | 1.007934e-51 | -8.615850e-47 |
Msa0119090 | Msa0346910 | 0.819037 | 1.432838e-52 | -8.615850e-47 |
Msa0119090 | Msa0347950 | 0.834347 | 3.158341e-56 | -8.615850e-47 |
Msa0119090 | Msa0347990 | 0.832590 | 8.665021e-56 | -8.615850e-47 |
Msa0119090 | Msa0362890 | 0.830268 | 3.231500e-55 | -8.615850e-47 |
Msa0119090 | Msa0363790 | 0.804075 | 2.570691e-49 | -8.615850e-47 |
Msa0119090 | Msa0366210 | 0.819031 | 1.437526e-52 | -8.615850e-47 |
Msa0119090 | Msa0371950 | 0.801399 | 9.172188e-49 | -8.615850e-47 |
Msa0119090 | Msa0376020 | 0.822037 | 2.934001e-53 | -8.615850e-47 |
Msa0119090 | Msa0377440 | 0.815002 | 1.155387e-51 | -8.615850e-47 |
Msa0119090 | Msa0378970 | 0.818131 | 2.300755e-52 | -8.615850e-47 |
Msa0119090 | Msa0381360 | 0.802805 | 4.713570e-49 | -8.615850e-47 |
Msa0119090 | Msa0382370 | 0.812050 | 5.152244e-51 | -8.615850e-47 |
Msa0119090 | Msa0387050 | 0.806394 | 8.405124e-50 | -8.615850e-47 |
Msa0119090 | Msa0388730 | 0.813008 | 3.180306e-51 | -8.615850e-47 |
Msa0119090 | Msa0389910 | 0.837441 | 5.189786e-57 | -8.615850e-47 |
Msa0119090 | Msa0392270 | 0.816836 | 4.503448e-52 | -8.615850e-47 |
Msa0119090 | Msa0395980 | 0.851282 | 9.822884e-61 | -8.615850e-47 |
Msa0119090 | Msa0398200 | 0.818365 | 2.036330e-52 | -8.615850e-47 |
Msa0119090 | Msa0403490 | 0.835520 | 1.599808e-56 | -8.615850e-47 |
Msa0119090 | Msa0414140 | 0.832277 | 1.036113e-55 | -8.615850e-47 |
Msa0119090 | Msa0423840 | 0.811508 | 6.758629e-51 | -8.615850e-47 |
Msa0119090 | Msa0428580 | 0.821138 | 4.734353e-53 | -8.615850e-47 |
Msa0119090 | Msa0430060 | 0.812842 | 3.458590e-51 | -8.615850e-47 |
Msa0119090 | Msa0430150 | 0.813359 | 2.664560e-51 | -8.615850e-47 |
Msa0119090 | Msa0432160 | 0.826090 | 3.282073e-54 | -8.615850e-47 |
Msa0119090 | Msa0432170 | 0.821375 | 4.175024e-53 | -8.615850e-47 |
Msa0119090 | Msa0438040 | 0.812031 | 5.201329e-51 | -8.615850e-47 |
Msa0119090 | Msa0440510 | 0.815481 | 9.044307e-52 | -8.615850e-47 |
Msa0119090 | Msa0455760 | 0.824657 | 7.167421e-54 | -8.615850e-47 |
Msa0119090 | Msa0473330 | 0.812105 | 5.010695e-51 | -8.615850e-47 |
Msa0119090 | Msa0473980 | 0.820288 | 7.424047e-53 | -8.615850e-47 |
Msa0119090 | Msa0474940 | 0.825263 | 5.156612e-54 | -8.615850e-47 |
Msa0119090 | Msa0476680 | 0.830856 | 2.319844e-55 | -8.615850e-47 |
Msa0119090 | Msa0477620 | 0.819608 | 1.062191e-52 | -8.615850e-47 |
Msa0119090 | Msa0480780 | 0.830905 | 2.256382e-55 | -8.615850e-47 |
Msa0119090 | Msa0481280 | 0.802615 | 5.157034e-49 | -8.615850e-47 |
Msa0119090 | Msa0486690 | 0.818132 | 2.299247e-52 | -8.615850e-47 |
Msa0119090 | Msa0487720 | 0.825731 | 3.993854e-54 | -8.615850e-47 |
Msa0119090 | Msa0491000 | 0.832966 | 6.991438e-56 | -8.615850e-47 |
Msa0119090 | Msa0510990 | 0.801966 | 7.017720e-49 | -8.615850e-47 |
Msa0119090 | Msa0516020 | 0.820307 | 7.350387e-53 | -8.615850e-47 |
Msa0119090 | Msa0521010 | 0.828480 | 8.784579e-55 | -8.615850e-47 |
Msa0119090 | Msa0523050 | 0.818359 | 2.043029e-52 | -8.615850e-47 |
Msa0119090 | Msa0526020 | 0.825305 | 5.041196e-54 | -8.615850e-47 |
Msa0119090 | Msa0560500 | 0.816184 | 6.304400e-52 | -8.615850e-47 |
Msa0119090 | Msa0566350 | 0.830760 | 2.448626e-55 | -8.615850e-47 |
Msa0119090 | Msa0566750 | 0.823425 | 1.394527e-53 | -8.615850e-47 |
Msa0119090 | Msa0576680 | 0.804297 | 2.311605e-49 | -8.615850e-47 |
Msa0119090 | Msa0579200 | 0.800782 | 1.226474e-48 | -8.615850e-47 |
Msa0119090 | Msa0581400 | 0.819196 | 1.318517e-52 | -8.615850e-47 |
Msa0119090 | Msa0604290 | 0.805384 | 1.370344e-49 | -8.615850e-47 |
Msa0119090 | Msa0618950 | 0.801166 | 1.023686e-48 | -8.615850e-47 |
Msa0119090 | Msa0621600 | 0.835889 | 1.290097e-56 | -8.615850e-47 |
Msa0119090 | Msa0622120 | 0.825980 | 3.487306e-54 | -8.615850e-47 |
Msa0119090 | Msa0623990 | 0.832759 | 7.868431e-56 | -8.615850e-47 |
Msa0119090 | Msa0624060 | 0.849511 | 3.085028e-60 | -8.615850e-47 |
Msa0119090 | Msa0641730 | 0.824014 | 1.015236e-53 | -8.615850e-47 |
Msa0119090 | Msa0645530 | 0.839092 | 1.948581e-57 | -8.615850e-47 |
Msa0119090 | Msa0651560 | 0.823773 | 1.156322e-53 | -8.615850e-47 |
Msa0119090 | Msa0652690 | 0.829816 | 4.165669e-55 | -8.615850e-47 |
Msa0119090 | Msa0658680 | 0.803670 | 3.120615e-49 | -8.615850e-47 |
Msa0119090 | Msa0661320 | 0.806566 | 7.728822e-50 | -8.615850e-47 |
Msa0119090 | Msa0676130 | 0.840858 | 6.751534e-58 | -8.615850e-47 |
Msa0119090 | Msa0676180 | 0.842888 | 1.964000e-58 | -8.615850e-47 |
Msa0119090 | Msa0685090 | 0.839330 | 1.690401e-57 | -8.615850e-47 |
Msa0119090 | Msa0689250 | 0.801944 | 7.089173e-49 | -8.615850e-47 |
Msa0119090 | Msa0704920 | 0.805724 | 1.162757e-49 | -8.615850e-47 |
Msa0119090 | Msa0705390 | 0.826608 | 2.470997e-54 | -8.615850e-47 |
Msa0119090 | Msa0712560 | 0.811801 | 5.838688e-51 | -8.615850e-47 |
Msa0119090 | Msa0733010 | 0.819095 | 1.390010e-52 | -8.615850e-47 |
Msa0119090 | Msa0733250 | 0.816503 | 5.347624e-52 | -8.615850e-47 |
Msa0119090 | Msa0738030 | 0.803730 | 3.032117e-49 | -8.615850e-47 |
Msa0119090 | Msa0741070 | 0.823686 | 1.211805e-53 | -8.615850e-47 |
Msa0119090 | Msa0749440 | 0.811040 | 8.541147e-51 | -8.615850e-47 |
Msa0119090 | Msa0756380 | 0.823325 | 1.472221e-53 | -8.615850e-47 |
Msa0119090 | Msa0763890 | 0.839249 | 1.773797e-57 | -8.615850e-47 |
Msa0119090 | Msa0763920 | 0.851871 | 6.689071e-61 | -8.615850e-47 |
Msa0119090 | Msa0780280 | 0.807115 | 5.916214e-50 | -8.615850e-47 |
Msa0119090 | Msa0787150 | 0.804429 | 2.169477e-49 | -8.615850e-47 |
Msa0119090 | Msa0789560 | 0.836857 | 7.319429e-57 | -8.615850e-47 |
Msa0119090 | Msa0791090 | 0.822267 | 2.595996e-53 | -8.615850e-47 |
Msa0119090 | Msa0795340 | 0.802877 | 4.553293e-49 | -8.615850e-47 |
Msa0119090 | Msa0797770 | 0.836795 | 7.591487e-57 | -8.615850e-47 |
Msa0119090 | Msa0808100 | 0.805762 | 1.141704e-49 | -8.615850e-47 |
Msa0119090 | Msa0811040 | 0.800079 | 1.705606e-48 | -8.615850e-47 |
Msa0119090 | Msa0823540 | 0.801207 | 1.003753e-48 | -8.615850e-47 |
Msa0119090 | Msa0835230 | 0.823629 | 1.249398e-53 | -8.615850e-47 |
Msa0119090 | Msa0844110 | 0.831360 | 1.744710e-55 | -8.615850e-47 |
Msa0119090 | Msa0855870 | 0.801560 | 8.500353e-49 | -8.615850e-47 |
Msa0119090 | Msa0857940 | 0.801371 | 9.290936e-49 | -8.615850e-47 |
Msa0119090 | Msa0868160 | 0.803939 | 2.743669e-49 | -8.615850e-47 |
Msa0119090 | Msa0873860 | 0.803005 | 4.285869e-49 | -8.615850e-47 |
Msa0119090 | Msa0899970 | 0.832698 | 8.149733e-56 | -8.615850e-47 |
Msa0119090 | Msa0909770 | 0.816474 | 5.427047e-52 | -8.615850e-47 |
Msa0119090 | Msa0921420 | 0.808182 | 3.511890e-50 | -8.615850e-47 |
Msa0119090 | Msa0933760 | 0.811167 | 8.014579e-51 | -8.615850e-47 |
Msa0119090 | Msa0945240 | 0.836006 | 1.204611e-56 | -8.615850e-47 |
Msa0119090 | Msa0954840 | 0.805672 | 1.191948e-49 | -8.615850e-47 |
Msa0119090 | Msa0958030 | 0.815068 | 1.117357e-51 | -8.615850e-47 |
Msa0119090 | Msa0965080 | 0.813265 | 2.793161e-51 | -8.615850e-47 |
Msa0119090 | Msa0965290 | 0.822825 | 1.925742e-53 | -8.615850e-47 |
Msa0119090 | Msa0985180 | 0.802837 | 4.641411e-49 | -8.615850e-47 |
Msa0119090 | Msa0985220 | 0.833681 | 4.637395e-56 | -8.615850e-47 |
Msa0119090 | Msa0986510 | 0.816656 | 4.942792e-52 | -8.615850e-47 |
Msa0119090 | Msa0992580 | 0.821095 | 4.843138e-53 | -8.615850e-47 |
Msa0119090 | Msa0992600 | 0.825912 | 3.619471e-54 | -8.615850e-47 |
Msa0119090 | Msa0999680 | 0.820525 | 6.550408e-53 | -8.615850e-47 |
Msa0119090 | Msa1011090 | 0.805576 | 1.248592e-49 | -8.615850e-47 |
Msa0119090 | Msa1024680 | 0.803931 | 2.753922e-49 | -8.615850e-47 |
Msa0119090 | Msa1026640 | 0.803753 | 2.999522e-49 | -8.615850e-47 |
Msa0119090 | Msa1034200 | 0.802604 | 5.184871e-49 | -8.615850e-47 |
Msa0119090 | Msa1034500 | 0.820000 | 8.643523e-53 | -8.615850e-47 |
Msa0119090 | Msa1063420 | 0.803098 | 4.098544e-49 | -8.615850e-47 |
Msa0119090 | Msa1077070 | 0.820291 | 7.414184e-53 | -8.615850e-47 |
Msa0119090 | Msa1080270 | 0.811209 | 7.851097e-51 | -8.615850e-47 |
Msa0119090 | Msa1098890 | 0.821096 | 4.840838e-53 | -8.615850e-47 |
Msa0119090 | Msa1122150 | 0.834691 | 2.588693e-56 | -8.615850e-47 |
Msa0119090 | Msa1122780 | 0.812894 | 3.369672e-51 | -8.615850e-47 |
Msa0119090 | Msa1126240 | 0.806212 | 9.177461e-50 | -8.615850e-47 |
Msa0119090 | Msa1127430 | 0.824749 | 6.818610e-54 | -8.615850e-47 |
Msa0119090 | Msa1130400 | 0.805472 | 1.313250e-49 | -8.615850e-47 |
Msa0119090 | Msa1130530 | 0.807954 | 3.926659e-50 | -8.615850e-47 |
Msa0119090 | Msa1137780 | 0.810707 | 1.008065e-50 | -8.615850e-47 |
Msa0119090 | Msa1144040 | 0.816827 | 4.524008e-52 | -8.615850e-47 |
Msa0119090 | Msa1160560 | 0.809919 | 1.491360e-50 | -8.615850e-47 |
Msa0119090 | Msa1161810 | 0.833815 | 4.294447e-56 | -8.615850e-47 |
Msa0119090 | Msa1163870 | 0.812482 | 4.146738e-51 | -8.615850e-47 |
Msa0119090 | Msa1183890 | 0.824088 | 9.755269e-54 | -8.615850e-47 |
Msa0119090 | Msa1203010 | 0.814045 | 1.881518e-51 | -8.615850e-47 |
Msa0119090 | Msa1205370 | 0.807645 | 4.567650e-50 | -8.615850e-47 |
Msa0119090 | Msa1208370 | 0.800071 | 1.711404e-48 | -8.615850e-47 |
Msa0119090 | Msa1209190 | 0.829394 | 5.275942e-55 | -8.615850e-47 |
Msa0119090 | Msa1211340 | 0.821782 | 3.362480e-53 | -8.615850e-47 |
Msa0119090 | Msa1221330 | 0.800563 | 1.359120e-48 | -8.615850e-47 |
Msa0119090 | Msa1236110 | -0.823881 | 1.090673e-53 | -8.615850e-47 |
Msa0119090 | Msa1250730 | 0.803564 | 3.283040e-49 | -8.615850e-47 |
Msa0119090 | Msa1255290 | 0.802613 | 5.163208e-49 | -8.615850e-47 |
Msa0119090 | Msa1259640 | 0.815731 | 7.953475e-52 | -8.615850e-47 |
Msa0119090 | Msa1283740 | 0.814157 | 1.777342e-51 | -8.615850e-47 |
Msa0119090 | Msa1304810 | 0.815243 | 1.021669e-51 | -8.615850e-47 |
Msa0119090 | Msa1329790 | 0.819428 | 1.167584e-52 | -8.615850e-47 |
Msa0119090 | Msa1332050 | 0.817096 | 3.937534e-52 | -8.615850e-47 |
Msa0119090 | Msa1333730 | 0.812366 | 4.395630e-51 | -8.615850e-47 |
Msa0119090 | Msa1336040 | 0.843903 | 1.052320e-58 | -8.615850e-47 |
Msa0119090 | Msa1337480 | 0.812127 | 4.957304e-51 | -8.615850e-47 |
Msa0119090 | Msa1340130 | 0.800565 | 1.357674e-48 | -8.615850e-47 |
Msa0119090 | Msa1340200 | 0.825263 | 5.155883e-54 | -8.615850e-47 |
Msa0119090 | Msa1349450 | 0.817289 | 3.562390e-52 | -8.615850e-47 |
Msa0119090 | Msa1349520 | 0.802571 | 5.266124e-49 | -8.615850e-47 |
Msa0119090 | Msa1358240 | 0.810891 | 9.198208e-51 | -8.615850e-47 |
Msa0119090 | Msa1359560 | 0.835067 | 2.082405e-56 | -8.615850e-47 |
Msa0119090 | Msa1366550 | 0.805658 | 1.200162e-49 | -8.615850e-47 |
Msa0119090 | Msa1368360 | 0.825618 | 4.248656e-54 | -8.615850e-47 |
Msa0119090 | Msa1371940 | 0.811847 | 5.703887e-51 | -8.615850e-47 |
Msa0119090 | Msa1372240 | 0.838005 | 3.717984e-57 | -8.615850e-47 |
Msa0119090 | Msa1372290 | 0.809717 | 1.647894e-50 | -8.615850e-47 |
Msa0119090 | Msa1377080 | 0.803725 | 3.039514e-49 | -8.615850e-47 |
Msa0119090 | Msa1377790 | 0.813808 | 2.121815e-51 | -8.615850e-47 |
Msa0119090 | Msa1378410 | 0.850414 | 1.724263e-60 | -8.615850e-47 |
Msa0119090 | Msa1383740 | 0.807438 | 5.054975e-50 | -8.615850e-47 |
Msa0119090 | Msa1391720 | 0.810136 | 1.339450e-50 | -8.615850e-47 |
Msa0119090 | Msa1400120 | 0.821121 | 4.778851e-53 | -8.615850e-47 |
Msa0119090 | Msa1400930 | 0.802294 | 6.005960e-49 | -8.615850e-47 |
Msa0119090 | Msa1401460 | 0.857856 | 1.226876e-62 | -8.615850e-47 |
Msa0119090 | Msa1409560 | 0.817021 | 4.092405e-52 | -8.615850e-47 |
Msa0119090 | Msa1413380 | 0.815283 | 1.000813e-51 | -8.615850e-47 |
Msa0119090 | Msa1419840 | 0.812799 | 3.534083e-51 | -8.615850e-47 |
Msa0119090 | Msa1426570 | 0.802709 | 4.933684e-49 | -8.615850e-47 |
Msa0119090 | Msa1431170 | 0.810807 | 9.592039e-51 | -8.615850e-47 |
Msa0119090 | Msa1437330 | 0.881328 | 2.630572e-70 | -8.615850e-47 |
Msa0119090 | Msa1438520 | 0.845642 | 3.575195e-59 | -8.615850e-47 |
Msa0119090 | Msa1446080 | 0.812385 | 4.354066e-51 | -8.615850e-47 |
Msa0119090 | Msa1448490 | 0.809613 | 1.735383e-50 | -8.615850e-47 |
Msa0119090 | Msa1450720 | 0.825467 | 4.614011e-54 | -8.615850e-47 |
Msa0119090 | Msa1463030 | 0.816342 | 5.809782e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0119090 | MtrunA17_Chr1g0176591 | 93.750 | 704 | 41 | 2 | 21 | 723 | 1 | 702 | 0.0 | 1345 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0119090 | AT5G26760.2 | 41.261 | 761 | 364 | 14 | 20 | 723 | 1 | 735 | 1.60e-172 | 512 |
Msa0119090 | AT5G26760.1 | 48.571 | 350 | 170 | 4 | 376 | 723 | 89 | 430 | 7.40e-105 | 327 |
Find 152 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTGAATTTCCATCATAAA+TGG | 0.132481 | 1_3:+42627259 | Msa0119090:three_prime_UTR |
CTTTGTGCAGTGAAAGAATT+TGG | 0.146405 | 1_3:+42624585 | Msa0119090:CDS |
TTGGAACCAATGGAAAATTT+TGG | 0.149339 | 1_3:+42623530 | Msa0119090:CDS |
TCTTCTTTGGCATATATATA+TGG | 0.189186 | 1_3:+42625191 | Msa0119090:CDS |
ATTCAATTGCTTGTTCAATT+AGG | 0.231043 | 1_3:-42624455 | None:intergenic |
GAAGAATTTCTATCAGTTAA+TGG | 0.239586 | 1_3:+42625233 | Msa0119090:CDS |
AACATTGGCAGAATTTAAAT+TGG | 0.247143 | 1_3:-42624421 | None:intergenic |
GAATCATTGTCTCTTTGTTT+TGG | 0.252817 | 1_3:-42623671 | None:intergenic |
AACAATGTTCTTAGGTTGTT+TGG | 0.256285 | 1_3:+42623497 | Msa0119090:CDS |
AATGATTATAAAAGTTTAAT+TGG | 0.257744 | 1_3:+42623982 | Msa0119090:CDS |
CCATATTGGAGAAGCCAAAA+AGG | 0.270922 | 1_3:+42624115 | Msa0119090:CDS |
GCATCAGAAGCAGTTGCTTC+TGG | 0.271175 | 1_3:+42624711 | Msa0119090:CDS |
GTGGATAACATCATCTTCTT+TGG | 0.277954 | 1_3:+42625178 | Msa0119090:CDS |
CAAACAGCTGGTCTTCTCTT+TGG | 0.278459 | 1_3:-42623205 | None:intergenic |
TCGGAAACTCCAGGTTTCTT+TGG | 0.282638 | 1_3:-42624951 | None:intergenic |
AGAATTTGGAAACATTAAAA+AGG | 0.285942 | 1_3:+42624599 | Msa0119090:CDS |
AAGTATCATATAGATAAAAT+TGG | 0.288959 | 1_3:-42627441 | None:intergenic |
TTAGATTTAAGAGAAGATTT+TGG | 0.295505 | 1_3:-42624492 | None:intergenic |
AGAAACTGAACAATGTTCTT+AGG | 0.303436 | 1_3:+42623489 | Msa0119090:CDS |
GGCCACGGTGTACTTATAAT+TGG | 0.312064 | 1_3:-42627401 | None:intergenic |
TGCCACTGCAGAGGTGTCTT+TGG | 0.317308 | 1_3:+42623607 | Msa0119090:CDS |
AAGAATTTCTATCAGTTAAT+GGG | 0.321763 | 1_3:+42625234 | Msa0119090:CDS |
GATGAGAAAATCAACAGTTC+TGG | 0.329888 | 1_3:+42624552 | Msa0119090:CDS |
AACTCAGTCGCTCTGTTACT+TGG | 0.346040 | 1_3:+42624526 | Msa0119090:CDS |
ACAAAGAGACAATGATTCTA+AGG | 0.351983 | 1_3:+42623676 | Msa0119090:CDS |
TTGCAATTGGCCCTCCTTGA+TGG | 0.353204 | 1_3:+42623179 | Msa0119090:CDS |
TCAACACTCCAATGCTTTGA+AGG | 0.354297 | 1_3:-42627351 | None:intergenic |
TAACCCTCAATTGCATTTGA+TGG | 0.359086 | 1_3:-42623644 | None:intergenic |
GTTCTGAGTGGTTCACAAAT+AGG | 0.360354 | 1_3:+42627151 | Msa0119090:CDS |
GAAATAAAACAAACATTAGT+TGG | 0.365903 | 1_3:+42625302 | Msa0119090:CDS |
CATTGCACCTCTCATCTTGC+AGG | 0.368177 | 1_3:-42623454 | None:intergenic |
CGACTTGCCACGATTAGCTT+TGG | 0.375326 | 1_3:-42623959 | None:intergenic |
ATCACATTCTCTTTCTGAAA+TGG | 0.377271 | 1_3:-42624313 | None:intergenic |
ACATCAATTACCAGCATCAT+TGG | 0.377762 | 1_3:-42624745 | None:intergenic |
AATTAAGCCGCCATCCATAT+TGG | 0.396147 | 1_3:+42624101 | Msa0119090:CDS |
ACAGTCAAACTAAAACCTTC+TGG | 0.396644 | 1_3:-42625017 | None:intergenic |
GAACTTAATCAAACACGTAT+AGG | 0.396804 | 1_3:+42627292 | Msa0119090:three_prime_UTR |
CTTCTTTGGCATATATATAT+GGG | 0.399659 | 1_3:+42625192 | Msa0119090:CDS |
TCCTCTGTCGCTAGGGGCCA+CGG | 0.401182 | 1_3:-42627416 | None:intergenic |
AAAATTCAGTTACTCTGAAA+TGG | 0.402967 | 1_3:+42624928 | Msa0119090:CDS |
AGAGTCAAACAAATCAAATT+CGG | 0.409918 | 1_3:-42624970 | None:intergenic |
TTCTAGAAACTTGCTTCTGA+TGG | 0.413119 | 1_3:+42623115 | Msa0119090:CDS |
CACTGTTTCATTCTGAATGC+TGG | 0.415973 | 1_3:-42626147 | None:intergenic |
CTGCTGTTGTTGAAGAGCTC+AGG | 0.417817 | 1_3:+42625345 | Msa0119090:CDS |
CGCTTGCTCTAATATATCTA+CGG | 0.420079 | 1_3:-42625378 | None:intergenic |
ATTGAATTTCCATCATAAAT+GGG | 0.426414 | 1_3:+42627260 | Msa0119090:three_prime_UTR |
TCTAATATATCTACGGGTAT+TGG | 0.431896 | 1_3:-42625371 | None:intergenic |
TAGTGTTTCGAAAGTATCAT+TGG | 0.437175 | 1_3:+42624050 | Msa0119090:CDS |
ATGCAAAATTGATATTCAAA+TGG | 0.438185 | 1_3:+42627488 | Msa0119090:three_prime_UTR |
CAATAGAAAACACAATAACT+TGG | 0.448887 | 1_3:-42627519 | None:intergenic |
TTTGCTGTTAATTACACAAC+CGG | 0.450833 | 1_3:-42623417 | None:intergenic |
ATGAGAAAATCAACAGTTCT+GGG | 0.455398 | 1_3:+42624553 | Msa0119090:CDS |
AGTGTTTCGAAAGTATCATT+GGG | 0.455834 | 1_3:+42624051 | Msa0119090:CDS |
CTGAAATGGCCAAAGAAACC+TGG | 0.462966 | 1_3:+42624942 | Msa0119090:CDS |
TAGATATCGGATTTCATTGA+AGG | 0.467664 | 1_3:+42623349 | Msa0119090:CDS |
GAAGACCAGCTGTTTGCAGC+TGG | 0.470370 | 1_3:+42623212 | Msa0119090:CDS |
TGATACTTTAATGCTGTTAG+TGG | 0.477402 | 1_3:+42627456 | Msa0119090:three_prime_UTR |
AGTACTTTCCTCAACAGCAT+TGG | 0.477464 | 1_3:-42624880 | None:intergenic |
TGTGAAAATGACAGTGGAAA+AGG | 0.478655 | 1_3:+42627621 | Msa0119090:three_prime_UTR |
ATTGGATTCCTCTGTCGCTA+GGG | 0.478912 | 1_3:-42627423 | None:intergenic |
AAGCAACTGCTTCTGATGCT+TGG | 0.479108 | 1_3:-42624707 | None:intergenic |
AAATTTGAACTTGGAACCAA+TGG | 0.481401 | 1_3:+42623520 | Msa0119090:CDS |
GTACTTTCCTCAACAGCATT+GGG | 0.483000 | 1_3:-42624879 | None:intergenic |
GAACATTGTTCAGTTTCTCC+AGG | 0.487506 | 1_3:-42623484 | None:intergenic |
TAGGAATTTCTCTTCAACAT+TGG | 0.487770 | 1_3:-42624436 | None:intergenic |
ACTCAGTCGCTCTGTTACTT+GGG | 0.488356 | 1_3:+42624527 | Msa0119090:CDS |
GGCAGAATTTAAATTGGAAG+TGG | 0.495798 | 1_3:-42624415 | None:intergenic |
GCTGGATACAATGTCGTTTG+TGG | 0.496169 | 1_3:+42626116 | Msa0119090:CDS |
CTTCTCTTTGGATACCATCA+AGG | 0.498483 | 1_3:-42623193 | None:intergenic |
TGGACCATCAAATGCAATTG+AGG | 0.498530 | 1_3:+42623640 | Msa0119090:CDS |
CATCAATTACCAGCATCATT+GGG | 0.503869 | 1_3:-42624744 | None:intergenic |
TTTGGCTTCTCCAATATGGA+TGG | 0.512435 | 1_3:-42624111 | None:intergenic |
GTGTCTTTGGAACAGTGGGC+TGG | 0.514994 | 1_3:+42623620 | Msa0119090:CDS |
TGATGTTATCCACGAAAAGA+AGG | 0.516826 | 1_3:-42625168 | None:intergenic |
AATTGGATTCCTCTGTCGCT+AGG | 0.517271 | 1_3:-42627424 | None:intergenic |
CAGATCCAGCTGCAAACAGC+TGG | 0.520179 | 1_3:-42623217 | None:intergenic |
GGGTTGGCAATAAAGTGGTC+AGG | 0.521721 | 1_3:+42624136 | Msa0119090:CDS |
TTGGGGCAAACAGATACAAC+TGG | 0.522191 | 1_3:+42624069 | Msa0119090:CDS |
ATGCTTTGAAGGTAAAAGAA+AGG | 0.523749 | 1_3:-42627340 | None:intergenic |
AAGGATTTCGTTGTACCACT+TGG | 0.526604 | 1_3:+42627196 | Msa0119090:CDS |
GACTCGGATCCCAATGATGC+TGG | 0.527843 | 1_3:+42624735 | Msa0119090:CDS |
AGAGGTGTCTTTGGAACAGT+GGG | 0.528299 | 1_3:+42623616 | Msa0119090:CDS |
AGCAGTTGCTTCTGGAGACT+CGG | 0.529316 | 1_3:+42624719 | Msa0119090:CDS |
GTCCTCGGAAGGGTAGATAT+CGG | 0.529838 | 1_3:+42623336 | Msa0119090:CDS |
GATACTTTAATGCTGTTAGT+GGG | 0.530504 | 1_3:+42627457 | Msa0119090:three_prime_UTR |
GCTTGCTCTAATATATCTAC+GGG | 0.532496 | 1_3:-42625377 | None:intergenic |
CCTCATTTCTCTTCTCAAAG+TGG | 0.532595 | 1_3:+42627226 | Msa0119090:CDS |
ACATCCTCCCAATGCTGTTG+AGG | 0.537391 | 1_3:+42624872 | Msa0119090:CDS |
AAATCAAATTCGGAAACTCC+AGG | 0.537463 | 1_3:-42624960 | None:intergenic |
GCATTCCACATAGTAGCAAA+AGG | 0.537790 | 1_3:-42625146 | None:intergenic |
CTTTGCCAACTGATCGTCCT+CGG | 0.538022 | 1_3:+42623321 | Msa0119090:CDS |
TGCTTCTGATGCTTGGCTCA+AGG | 0.539836 | 1_3:-42624700 | None:intergenic |
GTTGTTTGGAAATTTGAACT+TGG | 0.540609 | 1_3:+42623511 | Msa0119090:CDS |
TCAACAGCATTGGGAGGATG+TGG | 0.540662 | 1_3:-42624870 | None:intergenic |
GCCAACTGATCGTCCTCGGA+AGG | 0.542811 | 1_3:+42623325 | Msa0119090:CDS |
AGCAAAATTGTCTTGACAGA+TGG | 0.547346 | 1_3:+42625269 | Msa0119090:CDS |
AAGTTTCTAGAAATAGCATA+AGG | 0.550886 | 1_3:-42623104 | None:intergenic |
CTGAGCTCTTCAACAACAGC+AGG | 0.551817 | 1_3:-42625344 | None:intergenic |
CCCTTCCGAGGACGATCAGT+TGG | 0.553458 | 1_3:-42623326 | None:intergenic |
GGCTTCTCCAATATGGATGG+CGG | 0.555808 | 1_3:-42624108 | None:intergenic |
TCTTGTGCAGTATCGGAAGC+AGG | 0.557558 | 1_3:+42624834 | Msa0119090:intron |
GGACCATCAAATGCAATTGA+GGG | 0.558886 | 1_3:+42623641 | Msa0119090:CDS |
AAATCTTCTCTTAAATCTAA+CGG | 0.559728 | 1_3:+42624495 | Msa0119090:CDS |
ATGAAGATGTTGTAACTGAA+AGG | 0.563773 | 1_3:+42623258 | Msa0119090:CDS |
TGGTTTGATGCTCCACCAGA+AGG | 0.577882 | 1_3:+42625002 | Msa0119090:CDS |
CAGGAGGGACTTGTTTCTCA+AGG | 0.580423 | 1_3:+42626245 | Msa0119090:CDS |
TTATCTCATACATGACGGAC+AGG | 0.585032 | 1_3:+42626226 | Msa0119090:CDS |
AGGTCCATCGCTAATTTGTG+TGG | 0.588401 | 1_3:+42623278 | Msa0119090:CDS |
TTCAACAGAAGGATCATGAG+AGG | 0.591346 | 1_3:-42624268 | None:intergenic |
CTTTGGCATATATATATGGG+AGG | 0.592014 | 1_3:+42625195 | Msa0119090:CDS |
CAGAGGTGTCTTTGGAACAG+TGG | 0.592215 | 1_3:+42623615 | Msa0119090:CDS |
CAGAACAGAATGATTCTGAA+AGG | 0.593966 | 1_3:+42624337 | Msa0119090:CDS |
CTCATACATGACGGACAGGA+GGG | 0.594470 | 1_3:+42626230 | Msa0119090:CDS |
AAGTACCTCAACAAAAGAGA+AGG | 0.595618 | 1_3:+42624212 | Msa0119090:CDS |
AAAACATGTAAGTTTCGTGT+AGG | 0.601008 | 1_3:-42623388 | None:intergenic |
CATCGATTAATACAAAATGT+CGG | 0.605502 | 1_3:-42627545 | None:intergenic |
ACCGTGGCCCCTAGCGACAG+AGG | 0.607010 | 1_3:+42627415 | Msa0119090:three_prime_UTR |
GAAATCGATACAACTCAAAG+AGG | 0.607557 | 1_3:+42624359 | Msa0119090:CDS |
TTCCAAAGACACCTCTGCAG+TGG | 0.615979 | 1_3:-42623609 | None:intergenic |
TTTGGCATATATATATGGGA+GGG | 0.616710 | 1_3:+42625196 | Msa0119090:CDS |
GATTTCATTGAAGGAGCACA+AGG | 0.625957 | 1_3:+42623358 | Msa0119090:CDS |
GTCAAACTAAAACCTTCTGG+TGG | 0.626841 | 1_3:-42625014 | None:intergenic |
TCTCATACATGACGGACAGG+AGG | 0.627733 | 1_3:+42626229 | Msa0119090:CDS |
TACTCTTATCTCATACATGA+CGG | 0.628188 | 1_3:+42626221 | Msa0119090:CDS |
CTGGGAGCCTGCAAGATGAG+AGG | 0.628600 | 1_3:+42623447 | Msa0119090:CDS |
AACAGAAACTGCCACTGCAG+AGG | 0.631088 | 1_3:+42623598 | Msa0119090:CDS |
CAGAATGAAACAGTGGCAAG+TGG | 0.634857 | 1_3:+42626155 | Msa0119090:CDS |
GGCAAAGCATTGCGGCACAA+TGG | 0.636176 | 1_3:-42623305 | None:intergenic |
CCACTTTGAGAAGAGAAATG+AGG | 0.636699 | 1_3:-42627226 | None:intergenic |
GAGTGGTTCACAAATAGGCA+AGG | 0.636728 | 1_3:+42627156 | Msa0119090:CDS |
CTCTTTGGATACCATCAAGG+AGG | 0.637806 | 1_3:-42623190 | None:intergenic |
TTTCTGAAATGGTAATCGAG+TGG | 0.640137 | 1_3:-42624302 | None:intergenic |
CCAACTGATCGTCCTCGGAA+GGG | 0.642742 | 1_3:+42623326 | Msa0119090:CDS |
GGTCCATCGCTAATTTGTGT+GGG | 0.648300 | 1_3:+42623279 | Msa0119090:CDS |
ATACCCACACAAATTAGCGA+TGG | 0.649576 | 1_3:-42623282 | None:intergenic |
TTGGATTCCTCTGTCGCTAG+GGG | 0.650829 | 1_3:-42627422 | None:intergenic |
CTTTCCTCAACAGCATTGGG+AGG | 0.652955 | 1_3:-42624876 | None:intergenic |
TCTTTGGATACCATCAAGGA+GGG | 0.655363 | 1_3:-42623189 | None:intergenic |
GTCATGTATGAGATAAGAGT+AGG | 0.656182 | 1_3:-42626219 | None:intergenic |
AAATGAGGTGCTCGACCAAG+TGG | 0.656919 | 1_3:-42627211 | None:intergenic |
GATCAGTTGGCAAAGCATTG+CGG | 0.658842 | 1_3:-42623313 | None:intergenic |
AGATATATTAGAGCAAGCGA+TGG | 0.661113 | 1_3:+42625382 | Msa0119090:CDS |
TGTTTGACTCTGAAGACACG+TGG | 0.666494 | 1_3:+42624982 | Msa0119090:CDS |
ATCCGATATCTACCCTTCCG+AGG | 0.667151 | 1_3:-42623338 | None:intergenic |
TTGGTGAAGCAGGTTCTGAG+TGG | 0.679031 | 1_3:+42627139 | Msa0119090:intron |
GTGTTTCGAAAGTATCATTG+GGG | 0.679627 | 1_3:+42624052 | Msa0119090:CDS |
GCTGTTAATTACACAACCGG+AGG | 0.683543 | 1_3:-42623414 | None:intergenic |
GCAGGGTCCAAAGCTAATCG+TGG | 0.689841 | 1_3:+42623952 | Msa0119090:intron |
CAGCATTCAGAATGAAACAG+TGG | 0.697410 | 1_3:+42626148 | Msa0119090:CDS |
GGCATATGTGAAAATGACAG+TGG | 0.700784 | 1_3:+42627615 | Msa0119090:three_prime_UTR |
TGCTGTTGAGGAAAGTACTG+TGG | 0.706731 | 1_3:+42624884 | Msa0119090:CDS |
ATCCAATTATAAGTACACCG+TGG | 0.818278 | 1_3:+42627399 | Msa0119090:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGATTATAAAAGTTTAAT+TGG | + | chr1_3:42623982-42624001 | Msa0119090:CDS | 10.0% |
!!! | TATTATTTTACTCTATAATT+TGG | + | chr1_3:42626780-42626799 | Msa0119090:intron | 10.0% |
!! | AGGATTTCAAAAAATTATAT+TGG | - | chr1_3:42623744-42623763 | None:intergenic | 15.0% |
!! | ATTAAATATTTATTACACTC+TGG | + | chr1_3:42625452-42625471 | Msa0119090:intron | 15.0% |
!!! | TAAAACATTGCTTTATTAAT+TGG | + | chr1_3:42625743-42625762 | Msa0119090:intron | 15.0% |
!!! | AAACATTATAAATTTTCGAA+TGG | + | chr1_3:42625786-42625805 | Msa0119090:intron | 15.0% |
!!! | TTTCTAAATTTTGAAAAAGA+AGG | - | chr1_3:42625949-42625968 | None:intergenic | 15.0% |
!! | TACTAGCAAATAAAATAATA+AGG | - | chr1_3:42626509-42626528 | None:intergenic | 15.0% |
!!! | TATTTTATTTGCTAGTATTT+TGG | + | chr1_3:42626512-42626531 | Msa0119090:intron | 15.0% |
!! | AAAACTGAAAATAATAAGAT+AGG | - | chr1_3:42627048-42627067 | None:intergenic | 15.0% |
!! | AAGTATCATATAGATAAAAT+TGG | - | chr1_3:42627444-42627463 | None:intergenic | 15.0% |
!! | TCTAAGAAAAATGCTAAAAA+AGG | + | chr1_3:42623701-42623720 | Msa0119090:CDS | 20.0% |
!! | ATACTATAATTGTAAAGTTG+AGG | + | chr1_3:42623853-42623872 | Msa0119090:intron | 20.0% |
!!! | TTAGATTTAAGAGAAGATTT+TGG | - | chr1_3:42624495-42624514 | None:intergenic | 20.0% |
!! | AAATCTTCTCTTAAATCTAA+CGG | + | chr1_3:42624495-42624514 | Msa0119090:CDS | 20.0% |
!! | AGAATTTGGAAACATTAAAA+AGG | + | chr1_3:42624599-42624618 | Msa0119090:CDS | 20.0% |
!! | AAGAATTTCTATCAGTTAAT+GGG | + | chr1_3:42625234-42625253 | Msa0119090:CDS | 20.0% |
!! | GAAATAAAACAAACATTAGT+TGG | + | chr1_3:42625302-42625321 | Msa0119090:CDS | 20.0% |
!!! | TAATGACTTAGTTTAAAACA+AGG | - | chr1_3:42625436-42625455 | None:intergenic | 20.0% |
!! | TAGAAATTTCCAAAAAATCA+TGG | + | chr1_3:42625963-42625982 | Msa0119090:intron | 20.0% |
!! | AGAAATTTCCAAAAAATCAT+GGG | + | chr1_3:42625964-42625983 | Msa0119090:intron | 20.0% |
!!! | TATCCATTTTTGTTTATATG+AGG | + | chr1_3:42626057-42626076 | Msa0119090:intron | 20.0% |
!! | ATCAGAACAATATAAACAAA+TGG | - | chr1_3:42626276-42626295 | None:intergenic | 20.0% |
!! | ATCAGAACAATATAAACAAA+CGG | - | chr1_3:42626276-42626295 | None:intergenic | 20.0% |
!!! | TTATTTTACCCACATTAATA+TGG | + | chr1_3:42626404-42626423 | Msa0119090:intron | 20.0% |
!!! | AAGCATTTTATAATGATATC+AGG | + | chr1_3:42626450-42626469 | Msa0119090:intron | 20.0% |
!! | AATAAGGATTAAATGTTTGT+CGG | - | chr1_3:42626493-42626512 | None:intergenic | 20.0% |
!!! | CATTTAGAATAAACAAACAA+AGG | - | chr1_3:42626563-42626582 | None:intergenic | 20.0% |
!! | CACTAACAAATGTAATAATA+GGG | - | chr1_3:42626675-42626694 | None:intergenic | 20.0% |
!! | ACACTAACAAATGTAATAAT+AGG | - | chr1_3:42626676-42626695 | None:intergenic | 20.0% |
!!! | TATTACATTTGTTAGTGTTT+TGG | + | chr1_3:42626678-42626697 | Msa0119090:intron | 20.0% |
!!! | TTTTATTTTGTTAAGTTTGG+AGG | - | chr1_3:42626729-42626748 | None:intergenic | 20.0% |
!!! | GGATTTTATTTTGTTAAGTT+TGG | - | chr1_3:42626732-42626751 | None:intergenic | 20.0% |
!! | AGTAAAATAATATCTAAGCA+TGG | - | chr1_3:42626772-42626791 | None:intergenic | 20.0% |
!!! | ATAATTTGGTTTATCTAATG+TGG | + | chr1_3:42626794-42626813 | Msa0119090:intron | 20.0% |
!! | CAATTACAATTTACAACTAT+TGG | - | chr1_3:42626824-42626843 | None:intergenic | 20.0% |
!!! | GCAAGTAAATTTTATTCATA+TGG | - | chr1_3:42626901-42626920 | None:intergenic | 20.0% |
!! | ATTGAATTTCCATCATAAAT+GGG | + | chr1_3:42627260-42627279 | Msa0119090:three_prime_UTR | 20.0% |
!! | ATGCAAAATTGATATTCAAA+TGG | + | chr1_3:42627488-42627507 | Msa0119090:three_prime_UTR | 20.0% |
!! | AAGTTTCTAGAAATAGCATA+AGG | - | chr1_3:42623107-42623126 | None:intergenic | 25.0% |
! | AACATTGGCAGAATTTAAAT+TGG | - | chr1_3:42624424-42624443 | None:intergenic | 25.0% |
! | ATTCAATTGCTTGTTCAATT+AGG | - | chr1_3:42624458-42624477 | None:intergenic | 25.0% |
!! | AAAATTCAGTTACTCTGAAA+TGG | + | chr1_3:42624928-42624947 | Msa0119090:CDS | 25.0% |
! | AGAGTCAAACAAATCAAATT+CGG | - | chr1_3:42624973-42624992 | None:intergenic | 25.0% |
! | TCTTCTTTGGCATATATATA+TGG | + | chr1_3:42625191-42625210 | Msa0119090:CDS | 25.0% |
! | CTTCTTTGGCATATATATAT+GGG | + | chr1_3:42625192-42625211 | Msa0119090:CDS | 25.0% |
! | GAAGAATTTCTATCAGTTAA+TGG | + | chr1_3:42625233-42625252 | Msa0119090:CDS | 25.0% |
! | AATATTTATTACACTCTGGT+AGG | + | chr1_3:42625456-42625475 | Msa0119090:intron | 25.0% |
! | ATGCTAAAATTGATGAAACT+TGG | - | chr1_3:42625674-42625693 | None:intergenic | 25.0% |
!!! | CAATTTTAGCATATGTGAAA+AGG | + | chr1_3:42625682-42625701 | Msa0119090:intron | 25.0% |
! | GAGTATAAGAAACAAAGAAA+TGG | - | chr1_3:42625906-42625925 | None:intergenic | 25.0% |
!! | TTTCTTTGTTTCTTATACTC+TGG | + | chr1_3:42625906-42625925 | Msa0119090:intron | 25.0% |
!! | TTTCTTATACTCTGGTTTAT+AGG | + | chr1_3:42625914-42625933 | Msa0119090:intron | 25.0% |
! | CATCCTCATATAAACAAAAA+TGG | - | chr1_3:42626063-42626082 | None:intergenic | 25.0% |
!!! | TTATTTTACCCACATTACTA+TGG | + | chr1_3:42626299-42626318 | Msa0119090:intron | 25.0% |
!!! | AAGCATTTGATAATGATATC+AGG | + | chr1_3:42626345-42626364 | Msa0119090:intron | 25.0% |
!!! | TTTGATAATGATATCAGGTA+AGG | + | chr1_3:42626350-42626369 | Msa0119090:intron | 25.0% |
! | ATAAGGATTAAATGTTTGTC+GGG | - | chr1_3:42626492-42626511 | None:intergenic | 25.0% |
!! | TTCTATCATTAAGAAAGCAT+GGG | - | chr1_3:42626619-42626638 | None:intergenic | 25.0% |
! | TGTAAATTGTAATTGCTATG+CGG | + | chr1_3:42626829-42626848 | Msa0119090:intron | 25.0% |
!!! | TAATTTGTTAACCATTGTTC+TGG | + | chr1_3:42627109-42627128 | Msa0119090:intron | 25.0% |
! | CATTGAATTTCCATCATAAA+TGG | + | chr1_3:42627259-42627278 | Msa0119090:three_prime_UTR | 25.0% |
! | CAATAGAAAACACAATAACT+TGG | - | chr1_3:42627522-42627541 | None:intergenic | 25.0% |
!! | CATCGATTAATACAAAATGT+CGG | - | chr1_3:42627548-42627567 | None:intergenic | 25.0% |
!!! | TGCTGTTTTGAAATTGCAAT+TGG | + | chr1_3:42623166-42623185 | Msa0119090:CDS | 30.0% |
ATGAAGATGTTGTAACTGAA+AGG | + | chr1_3:42623258-42623277 | Msa0119090:CDS | 30.0% | |
TAGATATCGGATTTCATTGA+AGG | + | chr1_3:42623349-42623368 | Msa0119090:CDS | 30.0% | |
AAAACATGTAAGTTTCGTGT+AGG | - | chr1_3:42623391-42623410 | None:intergenic | 30.0% | |
!! | TTTGCTGTTAATTACACAAC+CGG | - | chr1_3:42623420-42623439 | None:intergenic | 30.0% |
AGAAACTGAACAATGTTCTT+AGG | + | chr1_3:42623489-42623508 | Msa0119090:CDS | 30.0% | |
! | AACAATGTTCTTAGGTTGTT+TGG | + | chr1_3:42623497-42623516 | Msa0119090:CDS | 30.0% |
GTTGTTTGGAAATTTGAACT+TGG | + | chr1_3:42623511-42623530 | Msa0119090:CDS | 30.0% | |
AAATTTGAACTTGGAACCAA+TGG | + | chr1_3:42623520-42623539 | Msa0119090:CDS | 30.0% | |
! | TTGGAACCAATGGAAAATTT+TGG | + | chr1_3:42623530-42623549 | Msa0119090:CDS | 30.0% |
!! | ACCAATGGAAAATTTTGGAA+AGG | + | chr1_3:42623535-42623554 | Msa0119090:CDS | 30.0% |
! | TCCTTTCCAAAATTTTCCAT+TGG | - | chr1_3:42623539-42623558 | None:intergenic | 30.0% |
!! | ATGGAAAATTTTGGAAAGGA+TGG | + | chr1_3:42623539-42623558 | Msa0119090:CDS | 30.0% |
!! | TTTTTCTGACTTGAAAATCC+AGG | + | chr1_3:42623571-42623590 | Msa0119090:CDS | 30.0% |
!! | GAATCATTGTCTCTTTGTTT+TGG | - | chr1_3:42623674-42623693 | None:intergenic | 30.0% |
ACAAAGAGACAATGATTCTA+AGG | + | chr1_3:42623676-42623695 | Msa0119090:CDS | 30.0% | |
ATAAGGCTATCTAATAGTCT+AGG | - | chr1_3:42623764-42623783 | None:intergenic | 30.0% | |
TTTGAGCAAAAAATGGCATA+AGG | - | chr1_3:42623781-42623800 | None:intergenic | 30.0% | |
! | AGACACTTTTGAGCAAAAAA+TGG | - | chr1_3:42623788-42623807 | None:intergenic | 30.0% |
!!! | TGTATTCTTTGTTTTCCTGA+TGG | + | chr1_3:42623819-42623838 | Msa0119090:intron | 30.0% |
!!! | GTATTCTTTGTTTTCCTGAT+GGG | + | chr1_3:42623820-42623839 | Msa0119090:intron | 30.0% |
GTATATTAAAATCACCCATC+AGG | - | chr1_3:42623837-42623856 | None:intergenic | 30.0% | |
TATTCCATTTCTCAGAACTT+AGG | - | chr1_3:42623880-42623899 | None:intergenic | 30.0% | |
!! | TAGTGTTTCGAAAGTATCAT+TGG | + | chr1_3:42624050-42624069 | Msa0119090:CDS | 30.0% |
!! | AGTGTTTCGAAAGTATCATT+GGG | + | chr1_3:42624051-42624070 | Msa0119090:CDS | 30.0% |
! | TATTTCCTTCTCTTTTGTTG+AGG | - | chr1_3:42624220-42624239 | None:intergenic | 30.0% |
! | ACAACTTTCTTTTCAACAGA+AGG | - | chr1_3:42624282-42624301 | None:intergenic | 30.0% |
! | ATCACATTCTCTTTCTGAAA+TGG | - | chr1_3:42624316-42624335 | None:intergenic | 30.0% |
TAGGAATTTCTCTTCAACAT+TGG | - | chr1_3:42624439-42624458 | None:intergenic | 30.0% | |
!!! | GAGAAGATTTTGGTTTAGTA+TGG | - | chr1_3:42624485-42624504 | None:intergenic | 30.0% |
ATGAGAAAATCAACAGTTCT+GGG | + | chr1_3:42624553-42624572 | Msa0119090:CDS | 30.0% | |
GGTAATTGATGTTTCTTTAG+AGG | + | chr1_3:42624756-42624775 | Msa0119090:intron | 30.0% | |
TTTGGCATATATATATGGGA+GGG | + | chr1_3:42625196-42625215 | Msa0119090:CDS | 30.0% | |
TCTAATATATCTACGGGTAT+TGG | - | chr1_3:42625374-42625393 | None:intergenic | 30.0% | |
!!! | TTCCTTATTTTGTGTATGAG+TGG | - | chr1_3:42625561-42625580 | None:intergenic | 30.0% |
ATAAGGAATCAACAAAACTG+TGG | + | chr1_3:42625573-42625592 | Msa0119090:intron | 30.0% | |
AATCAACAAAACTGTGGAAA+AGG | + | chr1_3:42625579-42625598 | Msa0119090:intron | 30.0% | |
TCCAAAAAATCATGGGTTTA+AGG | + | chr1_3:42625971-42625990 | Msa0119090:intron | 30.0% | |
! | TAAGTGCACAACTTTCTTTT+AGG | + | chr1_3:42626086-42626105 | Msa0119090:intron | 30.0% |
TACTCTTATCTCATACATGA+CGG | + | chr1_3:42626221-42626240 | Msa0119090:CDS | 30.0% | |
GATTGCTACCATATTAATGT+GGG | - | chr1_3:42626415-42626434 | None:intergenic | 30.0% | |
AGATTGCTACCATATTAATG+TGG | - | chr1_3:42626416-42626435 | None:intergenic | 30.0% | |
GAATAAACAAACAAAGGTGA+AGG | - | chr1_3:42626557-42626576 | None:intergenic | 30.0% | |
! | TCTATCATTAAGAAAGCATG+GGG | - | chr1_3:42626618-42626637 | None:intergenic | 30.0% |
CTTCTATCATTAAGAAAGCA+TGG | - | chr1_3:42626620-42626639 | None:intergenic | 30.0% | |
CATGCTTTCTTAATGATAGA+AGG | + | chr1_3:42626618-42626637 | Msa0119090:intron | 30.0% | |
ATCATTCCCAAGAAATACAT+AGG | - | chr1_3:42626971-42626990 | None:intergenic | 30.0% | |
TCTTGGGAATGATGTTAATA+TGG | + | chr1_3:42626978-42626997 | Msa0119090:intron | 30.0% | |
CTTGGGAATGATGTTAATAT+GGG | + | chr1_3:42626979-42626998 | Msa0119090:intron | 30.0% | |
!! | TTAATATGGGCACTTGTTTT+GGG | + | chr1_3:42626992-42627011 | Msa0119090:intron | 30.0% |
GAAATGATGTATGTAAACTG+AGG | + | chr1_3:42627017-42627036 | Msa0119090:intron | 30.0% | |
GAACTTAATCAAACACGTAT+AGG | + | chr1_3:42627292-42627311 | Msa0119090:three_prime_UTR | 30.0% | |
!! | ATGCTTTGAAGGTAAAAGAA+AGG | - | chr1_3:42627343-42627362 | None:intergenic | 30.0% |
! | TTCTTTTACCTTCAAAGCAT+TGG | + | chr1_3:42627343-42627362 | Msa0119090:three_prime_UTR | 30.0% |
TGATACTTTAATGCTGTTAG+TGG | + | chr1_3:42627456-42627475 | Msa0119090:three_prime_UTR | 30.0% | |
GATACTTTAATGCTGTTAGT+GGG | + | chr1_3:42627457-42627476 | Msa0119090:three_prime_UTR | 30.0% | |
! | CGACATTTTGTATTAATCGA+TGG | + | chr1_3:42627546-42627565 | Msa0119090:three_prime_UTR | 30.0% |
! | GATGTCTTTTACATAGCATT+TGG | + | chr1_3:42627594-42627613 | Msa0119090:three_prime_UTR | 30.0% |
!! | AGTGGAAAAGGTCTATTTTT+GGG | + | chr1_3:42627633-42627652 | Msa0119090:three_prime_UTR | 30.0% |
! | TTCTAGAAACTTGCTTCTGA+TGG | + | chr1_3:42623115-42623134 | Msa0119090:CDS | 35.0% |
CATCTTTGACAAAAACAAGC+TGG | - | chr1_3:42623148-42623167 | None:intergenic | 35.0% | |
!! | ACTTACATGTTTTGTTCCTC+CGG | + | chr1_3:42623398-42623417 | Msa0119090:CDS | 35.0% |
! | ATTAACAGCAAAGCTTTTGC+TGG | + | chr1_3:42623428-42623447 | Msa0119090:CDS | 35.0% |
! | TTAACAGCAAAGCTTTTGCT+GGG | + | chr1_3:42623429-42623448 | Msa0119090:CDS | 35.0% |
TAACCCTCAATTGCATTTGA+TGG | - | chr1_3:42623647-42623666 | None:intergenic | 35.0% | |
!! | GTGTTTCGAAAGTATCATTG+GGG | + | chr1_3:42624052-42624071 | Msa0119090:CDS | 35.0% |
CATATTGGAGAAGCCAAAAA+GGG | + | chr1_3:42624116-42624135 | Msa0119090:CDS | 35.0% | |
! | ACTTTATTGCCAACCCTTTT+TGG | - | chr1_3:42624132-42624151 | None:intergenic | 35.0% |
! | AAAAAGGGTTGGCAATAAAG+TGG | + | chr1_3:42624131-42624150 | Msa0119090:CDS | 35.0% |
AAGTACCTCAACAAAAGAGA+AGG | + | chr1_3:42624212-42624231 | Msa0119090:CDS | 35.0% | |
!! | TTTCTGAAATGGTAATCGAG+TGG | - | chr1_3:42624305-42624324 | None:intergenic | 35.0% |
CAGAACAGAATGATTCTGAA+AGG | + | chr1_3:42624337-42624356 | Msa0119090:CDS | 35.0% | |
GAAATCGATACAACTCAAAG+AGG | + | chr1_3:42624359-42624378 | Msa0119090:CDS | 35.0% | |
GGCAGAATTTAAATTGGAAG+TGG | - | chr1_3:42624418-42624437 | None:intergenic | 35.0% | |
GATGAGAAAATCAACAGTTC+TGG | + | chr1_3:42624552-42624571 | Msa0119090:CDS | 35.0% | |
CTTTGTGCAGTGAAAGAATT+TGG | + | chr1_3:42624585-42624604 | Msa0119090:CDS | 35.0% | |
GGAAACATTAAAAAGGAGTC+TGG | + | chr1_3:42624606-42624625 | Msa0119090:CDS | 35.0% | |
CATCAATTACCAGCATCATT+GGG | - | chr1_3:42624747-42624766 | None:intergenic | 35.0% | |
ACATCAATTACCAGCATCAT+TGG | - | chr1_3:42624748-42624767 | None:intergenic | 35.0% | |
AAATCAAATTCGGAAACTCC+AGG | - | chr1_3:42624963-42624982 | None:intergenic | 35.0% | |
ACAGTCAAACTAAAACCTTC+TGG | - | chr1_3:42625020-42625039 | None:intergenic | 35.0% | |
TGATGTTATCCACGAAAAGA+AGG | - | chr1_3:42625171-42625190 | None:intergenic | 35.0% | |
GTGGATAACATCATCTTCTT+TGG | + | chr1_3:42625178-42625197 | Msa0119090:CDS | 35.0% | |
CTTTGGCATATATATATGGG+AGG | + | chr1_3:42625195-42625214 | Msa0119090:CDS | 35.0% | |
! | TCTGTCAAGACAATTTTGCT+AGG | - | chr1_3:42625269-42625288 | None:intergenic | 35.0% |
AGCAAAATTGTCTTGACAGA+TGG | + | chr1_3:42625269-42625288 | Msa0119090:CDS | 35.0% | |
GCTTGCTCTAATATATCTAC+GGG | - | chr1_3:42625380-42625399 | None:intergenic | 35.0% | |
CGCTTGCTCTAATATATCTA+CGG | - | chr1_3:42625381-42625400 | None:intergenic | 35.0% | |
AGATATATTAGAGCAAGCGA+TGG | + | chr1_3:42625382-42625401 | Msa0119090:CDS | 35.0% | |
!!! | CTCTTCATTTTTTTGGAGAG+GGG | - | chr1_3:42625538-42625557 | None:intergenic | 35.0% |
!!! | GCTCTTCATTTTTTTGGAGA+GGG | - | chr1_3:42625539-42625558 | None:intergenic | 35.0% |
!!! | TGAGTGGCTCTTCATTTTTT+TGG | - | chr1_3:42625545-42625564 | None:intergenic | 35.0% |
AGCCACTCATACACAAAATA+AGG | + | chr1_3:42625556-42625575 | Msa0119090:intron | 35.0% | |
CAACAAAGAGAATGTGCTAT+AGG | - | chr1_3:42625620-42625639 | None:intergenic | 35.0% | |
CTATAGCACATTCTCTTTGT+TGG | + | chr1_3:42625618-42625637 | Msa0119090:intron | 35.0% | |
TAGCATATGTGAAAAGGAAC+TGG | + | chr1_3:42625688-42625707 | Msa0119090:intron | 35.0% | |
! | TGAAAAGGAACTGGTTTAGA+TGG | + | chr1_3:42625697-42625716 | Msa0119090:intron | 35.0% |
! | TGACTAGTTATGCACAATGT+TGG | + | chr1_3:42625809-42625828 | Msa0119090:intron | 35.0% |
! | ATACTCTGGTTTATAGGACA+AGG | + | chr1_3:42625920-42625939 | Msa0119090:intron | 35.0% |
!!! | GCCTTAAACCCATGATTTTT+TGG | - | chr1_3:42625975-42625994 | None:intergenic | 35.0% |
GTCATGTATGAGATAAGAGT+AGG | - | chr1_3:42626222-42626241 | None:intergenic | 35.0% | |
GATTGCTACCATAGTAATGT+GGG | - | chr1_3:42626310-42626329 | None:intergenic | 35.0% | |
AGATTGCTACCATAGTAATG+TGG | - | chr1_3:42626311-42626330 | None:intergenic | 35.0% | |
CTTAATGATAGAAGGTTGCA+TGG | + | chr1_3:42626626-42626645 | Msa0119090:intron | 35.0% | |
TTTGTTAAGTTTGGAGGTGA+AGG | - | chr1_3:42626723-42626742 | None:intergenic | 35.0% | |
!!! | GCGGATTTTTAGTTAAAGTG+AGG | + | chr1_3:42626848-42626867 | Msa0119090:intron | 35.0% |
TTCCCAAGAAATACATAGGT+GGG | - | chr1_3:42626967-42626986 | None:intergenic | 35.0% | |
ATTCCCAAGAAATACATAGG+TGG | - | chr1_3:42626968-42626987 | None:intergenic | 35.0% | |
! | GTTAATATGGGCACTTGTTT+TGG | + | chr1_3:42626991-42627010 | Msa0119090:intron | 35.0% |
! | AAGCTTTTGCCCATTTATGA+TGG | - | chr1_3:42627272-42627291 | None:intergenic | 35.0% |
ATCCAATTATAAGTACACCG+TGG | + | chr1_3:42627399-42627418 | Msa0119090:three_prime_UTR | 35.0% | |
TGTGAAAATGACAGTGGAAA+AGG | + | chr1_3:42627621-42627640 | Msa0119090:three_prime_UTR | 35.0% | |
! | CAGTGGAAAAGGTCTATTTT+TGG | + | chr1_3:42627632-42627651 | Msa0119090:three_prime_UTR | 35.0% |
!!! | GTGGAAAAGGTCTATTTTTG+GGG | + | chr1_3:42627634-42627653 | Msa0119090:three_prime_UTR | 35.0% |
TCTTTGGATACCATCAAGGA+GGG | - | chr1_3:42623192-42623211 | None:intergenic | 40.0% | |
CTTCTCTTTGGATACCATCA+AGG | - | chr1_3:42623196-42623215 | None:intergenic | 40.0% | |
ATACCCACACAAATTAGCGA+TGG | - | chr1_3:42623285-42623304 | None:intergenic | 40.0% | |
! | GATTTCATTGAAGGAGCACA+AGG | + | chr1_3:42623358-42623377 | Msa0119090:CDS | 40.0% |
GAACATTGTTCAGTTTCTCC+AGG | - | chr1_3:42623487-42623506 | None:intergenic | 40.0% | |
! | TGGCAGTTTCTGTTTTATCC+TGG | - | chr1_3:42623592-42623611 | None:intergenic | 40.0% |
TGGACCATCAAATGCAATTG+AGG | + | chr1_3:42623640-42623659 | Msa0119090:CDS | 40.0% | |
GGACCATCAAATGCAATTGA+GGG | + | chr1_3:42623641-42623660 | Msa0119090:CDS | 40.0% | |
!! | AGGACCTAAGTTCTGAGAAA+TGG | + | chr1_3:42623873-42623892 | Msa0119090:intron | 40.0% |
AATTAAGCCGCCATCCATAT+TGG | + | chr1_3:42624101-42624120 | Msa0119090:CDS | 40.0% | |
! | TTTGGCTTCTCCAATATGGA+TGG | - | chr1_3:42624114-42624133 | None:intergenic | 40.0% |
!!! | CCTTTTTGGCTTCTCCAATA+TGG | - | chr1_3:42624118-42624137 | None:intergenic | 40.0% |
CCATATTGGAGAAGCCAAAA+AGG | + | chr1_3:42624115-42624134 | Msa0119090:CDS | 40.0% | |
TTCAACAGAAGGATCATGAG+AGG | - | chr1_3:42624271-42624290 | None:intergenic | 40.0% | |
CATTAAAAAGGAGTCTGGTG+TGG | + | chr1_3:42624611-42624630 | Msa0119090:CDS | 40.0% | |
CAATGCATCTTGTGCAGTAT+CGG | + | chr1_3:42624827-42624846 | Msa0119090:intron | 40.0% | |
GTACTTTCCTCAACAGCATT+GGG | - | chr1_3:42624882-42624901 | None:intergenic | 40.0% | |
AGTACTTTCCTCAACAGCAT+TGG | - | chr1_3:42624883-42624902 | None:intergenic | 40.0% | |
GTCAAACTAAAACCTTCTGG+TGG | - | chr1_3:42625017-42625036 | None:intergenic | 40.0% | |
GTGACAACTGGAAGAAAGTT+CGG | - | chr1_3:42625127-42625146 | None:intergenic | 40.0% | |
TAGTAGCAAAAGGTGACAAC+TGG | - | chr1_3:42625139-42625158 | None:intergenic | 40.0% | |
! | TGTCACCTTTTGCTACTATG+TGG | + | chr1_3:42625141-42625160 | Msa0119090:CDS | 40.0% |
GCATTCCACATAGTAGCAAA+AGG | - | chr1_3:42625149-42625168 | None:intergenic | 40.0% | |
GAGGGGTCACAAACATAATA+GGG | - | chr1_3:42625521-42625540 | None:intergenic | 40.0% | |
AGAGGGGTCACAAACATAAT+AGG | - | chr1_3:42625522-42625541 | None:intergenic | 40.0% | |
!!! | GGCTCTTCATTTTTTTGGAG+AGG | - | chr1_3:42625540-42625559 | None:intergenic | 40.0% |
AATGGTTGCCAATGTGGTAT+GGG | - | chr1_3:42625888-42625907 | None:intergenic | 40.0% | |
AAATGGTTGCCAATGTGGTA+TGG | - | chr1_3:42625889-42625908 | None:intergenic | 40.0% | |
CAAAGAAATGGTTGCCAATG+TGG | - | chr1_3:42625894-42625913 | None:intergenic | 40.0% | |
!! | TTTCTTTTAGGTACGCTTGC+TGG | + | chr1_3:42626098-42626117 | Msa0119090:intron | 40.0% |
CACTGTTTCATTCTGAATGC+TGG | - | chr1_3:42626150-42626169 | None:intergenic | 40.0% | |
CAGCATTCAGAATGAAACAG+TGG | + | chr1_3:42626148-42626167 | Msa0119090:CDS | 40.0% | |
!! | TTATCTCATACATGACGGAC+AGG | + | chr1_3:42626226-42626245 | Msa0119090:CDS | 40.0% |
ATGGTGCAGCTAAGTTATGT+GGG | - | chr1_3:42626753-42626772 | None:intergenic | 40.0% | |
AAATACATAGGTGGGGAAAG+TGG | - | chr1_3:42626959-42626978 | None:intergenic | 40.0% | |
TTCCCCACCTATGTATTTCT+TGG | + | chr1_3:42626961-42626980 | Msa0119090:intron | 40.0% | |
TCCCCACCTATGTATTTCTT+GGG | + | chr1_3:42626962-42626981 | Msa0119090:intron | 40.0% | |
TCCCAAGAAATACATAGGTG+GGG | - | chr1_3:42626966-42626985 | None:intergenic | 40.0% | |
GTTAACCATTGTTCTGGTGT+TGG | + | chr1_3:42627115-42627134 | Msa0119090:intron | 40.0% | |
! | GTTCTGAGTGGTTCACAAAT+AGG | + | chr1_3:42627151-42627170 | Msa0119090:CDS | 40.0% |
!! | GGAAGAGTATGACGTTTTGA+AGG | + | chr1_3:42627177-42627196 | Msa0119090:CDS | 40.0% |
AAGGATTTCGTTGTACCACT+TGG | + | chr1_3:42627196-42627215 | Msa0119090:CDS | 40.0% | |
! | CCACTTTGAGAAGAGAAATG+AGG | - | chr1_3:42627229-42627248 | None:intergenic | 40.0% |
CCTCATTTCTCTTCTCAAAG+TGG | + | chr1_3:42627226-42627245 | Msa0119090:CDS | 40.0% | |
TCAACACTCCAATGCTTTGA+AGG | - | chr1_3:42627354-42627373 | None:intergenic | 40.0% | |
GGCATATGTGAAAATGACAG+TGG | + | chr1_3:42627615-42627634 | Msa0119090:three_prime_UTR | 40.0% | |
CTCTTTGGATACCATCAAGG+AGG | - | chr1_3:42623193-42623212 | None:intergenic | 45.0% | |
!! | CAAACAGCTGGTCTTCTCTT+TGG | - | chr1_3:42623208-42623227 | None:intergenic | 45.0% |
! | AGGTCCATCGCTAATTTGTG+TGG | + | chr1_3:42623278-42623297 | Msa0119090:CDS | 45.0% |
! | GGTCCATCGCTAATTTGTGT+GGG | + | chr1_3:42623279-42623298 | Msa0119090:CDS | 45.0% |
!! | GATCAGTTGGCAAAGCATTG+CGG | - | chr1_3:42623316-42623335 | None:intergenic | 45.0% |
GCTGTTAATTACACAACCGG+AGG | - | chr1_3:42623417-42623436 | None:intergenic | 45.0% | |
!! | GAGGTGCAATGTTTTAGACC+TGG | + | chr1_3:42623466-42623485 | Msa0119090:CDS | 45.0% |
!! | AGAGGTGTCTTTGGAACAGT+GGG | + | chr1_3:42623616-42623635 | Msa0119090:CDS | 45.0% |
TTGGGGCAAACAGATACAAC+TGG | + | chr1_3:42624069-42624088 | Msa0119090:CDS | 45.0% | |
TTGGAGAAGCCAAAAAGGGT+TGG | + | chr1_3:42624120-42624139 | Msa0119090:CDS | 45.0% | |
AACTCAGTCGCTCTGTTACT+TGG | + | chr1_3:42624526-42624545 | Msa0119090:CDS | 45.0% | |
! | ACTCAGTCGCTCTGTTACTT+GGG | + | chr1_3:42624527-42624546 | Msa0119090:CDS | 45.0% |
AAGCAACTGCTTCTGATGCT+TGG | - | chr1_3:42624710-42624729 | None:intergenic | 45.0% | |
CGATACTGCACAAGATGCAT+TGG | - | chr1_3:42624829-42624848 | None:intergenic | 45.0% | |
!! | TGCTGTTGAGGAAAGTACTG+TGG | + | chr1_3:42624884-42624903 | Msa0119090:CDS | 45.0% |
CTGAAATGGCCAAAGAAACC+TGG | + | chr1_3:42624942-42624961 | Msa0119090:CDS | 45.0% | |
TCGGAAACTCCAGGTTTCTT+TGG | - | chr1_3:42624954-42624973 | None:intergenic | 45.0% | |
! | TGTTTGACTCTGAAGACACG+TGG | + | chr1_3:42624982-42625001 | Msa0119090:CDS | 45.0% |
! | TGTGGAATGCCTTCTTTTCG+TGG | + | chr1_3:42625159-42625178 | Msa0119090:CDS | 45.0% |
! | CTGGAATTTGCTTCCTGCAA+AGG | + | chr1_3:42625838-42625857 | Msa0119090:intron | 45.0% |
CTTCCTGCAAAGGCAAGATA+AGG | + | chr1_3:42625848-42625867 | Msa0119090:intron | 45.0% | |
CAACCTTATCTTGCCTTTGC+AGG | - | chr1_3:42625854-42625873 | None:intergenic | 45.0% | |
CTGCAAAGGCAAGATAAGGT+TGG | + | chr1_3:42625852-42625871 | Msa0119090:intron | 45.0% | |
GCTATTGACCCATACCACAT+TGG | + | chr1_3:42625877-42625896 | Msa0119090:intron | 45.0% | |
TAAGGCTGTCTGTTGCAGTT+AGG | + | chr1_3:42625989-42626008 | Msa0119090:intron | 45.0% | |
! | GCTGGATACAATGTCGTTTG+TGG | + | chr1_3:42626116-42626135 | Msa0119090:CDS | 45.0% |
CAGAATGAAACAGTGGCAAG+TGG | + | chr1_3:42626155-42626174 | Msa0119090:CDS | 45.0% | |
ATGGGGCAGCTAAGTTATGT+GGG | - | chr1_3:42626601-42626620 | None:intergenic | 45.0% | |
CATGGTGCAGCTAAGTTATG+TGG | - | chr1_3:42626754-42626773 | None:intergenic | 45.0% | |
!!! | ATATGGGCACTTGTTTTGGG+TGG | + | chr1_3:42626995-42627014 | Msa0119090:intron | 45.0% |
CCAAACCAACACCAGAACAA+TGG | - | chr1_3:42627123-42627142 | None:intergenic | 45.0% | |
!! | CCATTGTTCTGGTGTTGGTT+TGG | + | chr1_3:42627120-42627139 | Msa0119090:intron | 45.0% |
GAGTGGTTCACAAATAGGCA+AGG | + | chr1_3:42627156-42627175 | Msa0119090:CDS | 45.0% | |
GGCCACGGTGTACTTATAAT+TGG | - | chr1_3:42627404-42627423 | None:intergenic | 45.0% | |
ATTGGATTCCTCTGTCGCTA+GGG | - | chr1_3:42627426-42627445 | None:intergenic | 45.0% | |
AATTGGATTCCTCTGTCGCT+AGG | - | chr1_3:42627427-42627446 | None:intergenic | 45.0% | |
TTGCAATTGGCCCTCCTTGA+TGG | + | chr1_3:42623179-42623198 | Msa0119090:CDS | 50.0% | |
CTTTGCCAACTGATCGTCCT+CGG | + | chr1_3:42623321-42623340 | Msa0119090:CDS | 50.0% | |
GTCCTCGGAAGGGTAGATAT+CGG | + | chr1_3:42623336-42623355 | Msa0119090:CDS | 50.0% | |
ATCCGATATCTACCCTTCCG+AGG | - | chr1_3:42623341-42623360 | None:intergenic | 50.0% | |
CATTGCACCTCTCATCTTGC+AGG | - | chr1_3:42623457-42623476 | None:intergenic | 50.0% | |
AACAGAAACTGCCACTGCAG+AGG | + | chr1_3:42623598-42623617 | Msa0119090:CDS | 50.0% | |
TTCCAAAGACACCTCTGCAG+TGG | - | chr1_3:42623612-42623631 | None:intergenic | 50.0% | |
!! | CAGAGGTGTCTTTGGAACAG+TGG | + | chr1_3:42623615-42623634 | Msa0119090:CDS | 50.0% |
CACAATCGGCAGTGGGAAAA+TGG | - | chr1_3:42623928-42623947 | None:intergenic | 50.0% | |
!! | CGACTTGCCACGATTAGCTT+TGG | - | chr1_3:42623962-42623981 | None:intergenic | 50.0% |
GGCTTCTCCAATATGGATGG+CGG | - | chr1_3:42624111-42624130 | None:intergenic | 50.0% | |
! | GGGTTGGCAATAAAGTGGTC+AGG | + | chr1_3:42624136-42624155 | Msa0119090:CDS | 50.0% |
TGCTTCTGATGCTTGGCTCA+AGG | - | chr1_3:42624703-42624722 | None:intergenic | 50.0% | |
GCATCAGAAGCAGTTGCTTC+TGG | + | chr1_3:42624711-42624730 | Msa0119090:CDS | 50.0% | |
! | AGCAGTTGCTTCTGGAGACT+CGG | + | chr1_3:42624719-42624738 | Msa0119090:CDS | 50.0% |
! | TCTTGTGCAGTATCGGAAGC+AGG | + | chr1_3:42624834-42624853 | Msa0119090:intron | 50.0% |
! | TCAACAGCATTGGGAGGATG+TGG | - | chr1_3:42624873-42624892 | None:intergenic | 50.0% |
ACATCCTCCCAATGCTGTTG+AGG | + | chr1_3:42624872-42624891 | Msa0119090:CDS | 50.0% | |
! | CTTTCCTCAACAGCATTGGG+AGG | - | chr1_3:42624879-42624898 | None:intergenic | 50.0% |
TGGTTTGATGCTCCACCAGA+AGG | + | chr1_3:42625002-42625021 | Msa0119090:CDS | 50.0% | |
CTGAGCTCTTCAACAACAGC+AGG | - | chr1_3:42625347-42625366 | None:intergenic | 50.0% | |
CTGCTGTTGTTGAAGAGCTC+AGG | + | chr1_3:42625345-42625364 | Msa0119090:CDS | 50.0% | |
TGCACAATGTTGGCGAGTTC+TGG | + | chr1_3:42625819-42625838 | Msa0119090:intron | 50.0% | |
!! | TCTCATACATGACGGACAGG+AGG | + | chr1_3:42626229-42626248 | Msa0119090:CDS | 50.0% |
!! | CTCATACATGACGGACAGGA+GGG | + | chr1_3:42626230-42626249 | Msa0119090:CDS | 50.0% |
! | CAGGAGGGACTTGTTTCTCA+AGG | + | chr1_3:42626245-42626264 | Msa0119090:CDS | 50.0% |
TGGGGCAGCTAAGTTATGTG+GGG | - | chr1_3:42626600-42626619 | None:intergenic | 50.0% | |
CATGGGGCAGCTAAGTTATG+TGG | - | chr1_3:42626602-42626621 | None:intergenic | 50.0% | |
AGGGATCAAGCGTGTTTGTC+AGG | - | chr1_3:42626656-42626675 | None:intergenic | 50.0% | |
!! | TGGTGTTGGTTTGGTGAAGC+AGG | + | chr1_3:42627129-42627148 | Msa0119090:intron | 50.0% |
!! | TTGGTGAAGCAGGTTCTGAG+TGG | + | chr1_3:42627139-42627158 | Msa0119090:intron | 50.0% |
! | AAATGAGGTGCTCGACCAAG+TGG | - | chr1_3:42627214-42627233 | None:intergenic | 50.0% |
TTGGATTCCTCTGTCGCTAG+GGG | - | chr1_3:42627425-42627444 | None:intergenic | 50.0% | |
GAAGACCAGCTGTTTGCAGC+TGG | + | chr1_3:42623212-42623231 | Msa0119090:CDS | 55.0% | |
CAGATCCAGCTGCAAACAGC+TGG | - | chr1_3:42623220-42623239 | None:intergenic | 55.0% | |
!! | GGCAAAGCATTGCGGCACAA+TGG | - | chr1_3:42623308-42623327 | None:intergenic | 55.0% |
CCAACTGATCGTCCTCGGAA+GGG | + | chr1_3:42623326-42623345 | Msa0119090:CDS | 55.0% | |
!! | TGCCACTGCAGAGGTGTCTT+TGG | + | chr1_3:42623607-42623626 | Msa0119090:CDS | 55.0% |
!! | GTGTCTTTGGAACAGTGGGC+TGG | + | chr1_3:42623620-42623639 | Msa0119090:CDS | 55.0% |
TGCAACGCACAATCGGCAGT+GGG | - | chr1_3:42623935-42623954 | None:intergenic | 55.0% | |
! | ACTGCCGATTGTGCGTTGCA+GGG | + | chr1_3:42623935-42623954 | Msa0119090:intron | 55.0% |
TGGACCCTGCAACGCACAAT+CGG | - | chr1_3:42623942-42623961 | None:intergenic | 55.0% | |
GCAGGGTCCAAAGCTAATCG+TGG | + | chr1_3:42623952-42623971 | Msa0119090:intron | 55.0% | |
GACTCGGATCCCAATGATGC+TGG | + | chr1_3:42624735-42624754 | Msa0119090:CDS | 55.0% | |
GCCAACTGATCGTCCTCGGA+AGG | + | chr1_3:42623325-42623344 | Msa0119090:CDS | 60.0% | |
CCCTTCCGAGGACGATCAGT+TGG | - | chr1_3:42623329-42623348 | None:intergenic | 60.0% | |
CTGGGAGCCTGCAAGATGAG+AGG | + | chr1_3:42623447-42623466 | Msa0119090:CDS | 60.0% | |
CTGCAACGCACAATCGGCAG+TGG | - | chr1_3:42623936-42623955 | None:intergenic | 60.0% | |
! | CACTGCCGATTGTGCGTTGC+AGG | + | chr1_3:42623934-42623953 | Msa0119090:intron | 60.0% |
TCCTCTGTCGCTAGGGGCCA+CGG | - | chr1_3:42627419-42627438 | None:intergenic | 65.0% | |
ACCGTGGCCCCTAGCGACAG+AGG | + | chr1_3:42627415-42627434 | Msa0119090:three_prime_UTR | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 42623074 | 42627695 | 42623074 | ID=Msa0119090;Name=Msa0119090 |
chr1_3 | mRNA | 42623074 | 42627695 | 42623074 | ID=Msa0119090-mRNA-1;Parent=Msa0119090;Name=Msa0119090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.83|1|1|1|6|440|723 |
chr1_3 | exon | 42623074 | 42623722 | 42623074 | ID=Msa0119090-mRNA-1:exon:12833;Parent=Msa0119090-mRNA-1 |
chr1_3 | exon | 42623956 | 42624756 | 42623956 | ID=Msa0119090-mRNA-1:exon:12834;Parent=Msa0119090-mRNA-1 |
chr1_3 | exon | 42624844 | 42625037 | 42624844 | ID=Msa0119090-mRNA-1:exon:12835;Parent=Msa0119090-mRNA-1 |
chr1_3 | exon | 42625140 | 42625403 | 42625140 | ID=Msa0119090-mRNA-1:exon:12836;Parent=Msa0119090-mRNA-1 |
chr1_3 | exon | 42626108 | 42626266 | 42626108 | ID=Msa0119090-mRNA-1:exon:12837;Parent=Msa0119090-mRNA-1 |
chr1_3 | exon | 42627151 | 42627695 | 42627151 | ID=Msa0119090-mRNA-1:exon:12838;Parent=Msa0119090-mRNA-1 |
chr1_3 | CDS | 42623074 | 42623722 | 42623074 | ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1 |
chr1_3 | CDS | 42623956 | 42624756 | 42623956 | ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1 |
chr1_3 | CDS | 42624844 | 42625037 | 42624844 | ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1 |
chr1_3 | CDS | 42625140 | 42625403 | 42625140 | ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1 |
chr1_3 | CDS | 42626108 | 42626266 | 42626108 | ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1 |
chr1_3 | CDS | 42627151 | 42627255 | 42627151 | ID=Msa0119090-mRNA-1:cds;Parent=Msa0119090-mRNA-1 |
chr1_3 | three_prime_UTR | 42627256 | 42627695 | 42627256 | ID=Msa0119090-mRNA-1:three_prime_utr;Parent=Msa0119090-mRNA-1 |
Gene Sequence |
Protein sequence |