AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797770 MtrunA17_Chr5g0401141 99.493 592 3 0 1 592 1 592 0.0 1231
Msa0797770 MtrunA17_Chr8g0351571 56.774 155 67 0 347 501 3 157 3.56e-57 189
Msa0797770 MtrunA17_Chr7g0266721 51.370 146 71 0 347 492 12 157 5.93e-48 165
Msa0797770 MtrunA17_Chr2g0321111 49.007 151 77 0 347 497 464 614 9.47e-43 162
Msa0797770 MtrunA17_Chr2g0288371 46.988 166 86 2 341 504 9 174 2.08e-36 142
Msa0797770 MtrunA17_Chr7g0260441 50.340 147 59 5 358 492 25 169 7.43e-33 134
Msa0797770 MtrunA17_Chr4g0045321 44.737 152 71 4 354 493 18 168 1.20e-32 129
Msa0797770 MtrunA17_Chr8g0374621 40.609 197 82 6 354 516 18 213 1.90e-32 128
Msa0797770 MtrunA17_Chr6g0484281 39.521 167 93 2 347 505 3 169 1.03e-31 130
Msa0797770 MtrunA17_Chr7g0274841 52.206 136 53 4 354 478 18 152 1.37e-31 120
Msa0797770 MtrunA17_Chr1g0213971 47.222 144 71 4 354 493 94 236 6.20e-31 120
Msa0797770 MtrunA17_Chr8g0357591 38.922 167 94 2 347 505 3 169 2.28e-30 125
Msa0797770 MtrunA17_Chr1g0193711 47.586 145 70 5 354 493 99 242 3.78e-30 119
Msa0797770 MtrunA17_Chr7g0270991 45.833 144 73 4 354 493 110 252 1.72e-29 117
Msa0797770 MtrunA17_Chr4g0038431 49.265 136 57 4 354 478 18 152 1.11e-28 112
Msa0797770 MtrunA17_Chr3g0145501 48.529 136 58 4 354 478 26 160 5.66e-28 110
Msa0797770 MtrunA17_Chr3g0104751 47.761 134 58 4 354 476 48 180 8.87e-28 110
Msa0797770 MtrunA17_Chr8g0353571 45.455 143 67 4 354 486 32 173 9.29e-28 110
Msa0797770 MtrunA17_Chr3g0113441 42.604 169 70 6 325 476 52 210 8.42e-27 108
Msa0797770 MtrunA17_Chr4g0037281 41.892 148 74 4 356 492 63 209 4.23e-24 100
Msa0797770 MtrunA17_Chr3g0138061 40.411 146 73 5 359 492 29 172 2.91e-19 92.4
Msa0797770 MtrunA17_Chr1g0199071 34.641 153 92 3 345 496 80 225 9.70e-18 82.8
Msa0797770 MtrunA17_Chr1g0149061 39.850 133 66 5 358 478 25 155 7.74e-17 84.3
Msa0797770 MtrunA17_Chr1g0163031 30.464 151 100 3 345 495 79 224 2.63e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797770 AT5G67530.1 76.421 598 132 5 1 592 1 595 0.0 909
Msa0797770 AT1G01940.1 55.484 155 69 0 347 501 3 157 3.49e-56 187
Msa0797770 AT2G36130.1 50.685 146 72 0 347 492 12 157 2.24e-49 169
Msa0797770 AT3G44600.1 50.331 151 75 0 347 497 478 628 3.63e-42 161
Msa0797770 AT4G33060.1 44.910 167 89 3 341 504 9 175 2.29e-39 151
Msa0797770 AT1G53720.2 40.719 167 91 2 347 505 3 169 6.14e-34 132
Msa0797770 AT5G13120.1 48.951 143 68 4 354 492 107 248 8.28e-34 130
Msa0797770 AT5G13120.2 48.951 143 68 4 354 492 103 244 8.79e-34 129
Msa0797770 AT3G63400.2 49.660 147 60 5 358 492 25 169 7.97e-33 130
Msa0797770 AT1G53720.1 40.719 167 91 2 347 505 3 169 8.99e-33 132
Msa0797770 AT3G56070.1 47.799 159 70 5 354 501 18 174 1.57e-32 123
Msa0797770 AT3G56070.2 47.799 159 70 5 354 501 18 174 1.57e-32 123
Msa0797770 AT3G63400.3 49.660 147 60 5 358 492 25 169 7.03e-32 130
Msa0797770 AT3G63400.4 49.660 147 60 5 358 492 25 169 7.03e-32 130
Msa0797770 AT3G63400.1 49.660 147 60 5 358 492 25 169 7.03e-32 130
Msa0797770 AT2G15790.1 45.033 151 70 4 354 492 18 167 4.27e-31 125
Msa0797770 AT2G16600.1 48.000 150 65 5 354 492 19 166 6.61e-30 116
Msa0797770 AT3G62030.3 46.154 143 72 4 354 492 108 249 1.40e-29 118
Msa0797770 AT3G62030.1 46.154 143 72 4 354 492 109 250 1.44e-29 118
Msa0797770 AT4G34870.1 47.020 151 67 5 354 493 18 166 3.23e-29 114
Msa0797770 AT4G38740.1 46.000 150 68 5 354 492 18 165 3.43e-29 114
Msa0797770 AT3G62030.2 46.154 143 72 4 354 492 162 303 3.89e-29 118
Msa0797770 AT2G21130.1 45.333 150 69 5 354 492 19 166 4.42e-29 114
Msa0797770 AT3G55920.1 49.254 134 56 4 354 476 73 205 1.05e-28 114
Msa0797770 AT2G29960.1 49.254 134 56 4 354 476 46 178 1.97e-27 110
Msa0797770 AT2G29960.3 49.254 134 56 4 354 476 46 178 1.97e-27 110
Msa0797770 AT5G58710.1 42.675 157 66 5 354 487 49 204 5.78e-26 106
Msa0797770 AT2G38730.1 42.000 150 76 4 354 493 46 194 2.11e-25 104
Msa0797770 AT4G34960.1 40.000 150 78 4 354 492 61 209 5.15e-23 98.2
Msa0797770 AT2G16600.2 43.262 141 63 4 354 492 19 144 7.77e-22 92.8
Msa0797770 AT2G29960.2 44.030 134 53 5 354 476 46 168 7.68e-21 91.3
Msa0797770 AT4G34960.2 46.667 105 44 4 354 447 61 164 3.91e-19 85.5
Msa0797770 AT2G47320.1 31.646 158 104 3 339 496 72 225 4.58e-16 78.2
Msa0797770 AT4G32420.1 33.333 147 84 5 358 492 25 169 1.42e-12 71.2
Msa0797770 AT4G32420.5 33.333 147 84 5 358 492 25 169 1.42e-12 71.2
Msa0797770 AT4G32420.3 33.333 147 84 5 358 492 25 169 1.42e-12 71.2
Msa0797770 AT4G32420.6 33.333 147 84 5 358 492 25 169 1.42e-12 71.2
Msa0797770 AT1G53780.2 38.043 92 56 1 415 505 4 95 1.97e-12 70.5
Msa0797770 AT4G32420.4 33.835 133 75 4 358 478 25 156 5.21e-12 69.3

Find 159 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAATTGTATTGAAAATT+TGG 0.022268 5_3:-10008558 None:intergenic
TGGGATTGGGTTCCGGTTTC+CGG 0.187538 5_3:-10002334 None:intergenic
TCCCGACATGTTTATGTTAT+AGG 0.188740 5_3:-10006526 None:intergenic
ATCATTTGCATTCTTCTCTT+TGG 0.192528 5_3:-10008213 None:intergenic
CCTTCCAGAGTGGACTAATT+TGG 0.194082 5_3:-10007427 None:intergenic
CTTCCCCATTGCTAGGGTTT+TGG 0.219469 5_3:-10002411 None:intergenic
TGTACATATCCCTTCTTCTT+TGG 0.242086 5_3:-10007105 None:intergenic
AGATTAATCTTTGATCTATT+CGG 0.263636 5_3:-10002236 None:intergenic
ACTCCATATATTATAAAATA+TGG 0.273786 5_3:+10003165 Msa0797770:CDS
GAGTTAAGTTCATCCTTAAA+AGG 0.274372 5_3:-10007405 None:intergenic
TTCAGTTGCCCATTCTGTTT+TGG 0.282338 5_3:-10002465 None:intergenic
ACGCACGCGCAGCAATAAAA+AGG 0.292893 5_3:-10002536 None:intergenic
TTGTGATCGTGCAGCTAAAA+TGG 0.299588 5_3:-10006658 None:intergenic
GTAGAGGTGGTGAATCAATT+TGG 0.300503 5_3:+10007376 Msa0797770:CDS
TGGCGGAAAATTTAAATATC+TGG 0.302090 5_3:-10008780 None:intergenic
ACAAATTGTATTGAAAATTT+GGG 0.320416 5_3:-10008557 None:intergenic
ACACTACTGGCGCTGCTTCC+CGG 0.320784 5_3:+10007013 Msa0797770:CDS
AAGTTGAAGATAACAATCTA+TGG 0.320908 5_3:-10002354 None:intergenic
TATGGTAAACATCCTGTTAC+TGG 0.327911 5_3:+10003183 Msa0797770:CDS
CAATCTATGGGATTGGGTTC+CGG 0.328802 5_3:-10002341 None:intergenic
GCTTGCTCTTCTTCCTCATC+TGG 0.351194 5_3:-10008185 None:intergenic
ATCTTTGATCTATTCGGCTT+CGG 0.352649 5_3:-10002230 None:intergenic
TAGAGGTGGTGAATCAATTT+GGG 0.354211 5_3:+10007377 Msa0797770:CDS
TCCTCATCTGGCTCGGTGTA+AGG 0.356961 5_3:-10008173 None:intergenic
CGCTGAAAATCGCCGGAAAC+CGG 0.359282 5_3:+10002322 Msa0797770:five_prime_UTR
AGCCACATGCATAGCTATTC+TGG 0.365801 5_3:-10006808 None:intergenic
ACCTTCTGGTCAAGTGCATT+AGG 0.369714 5_3:-10006303 None:intergenic
AGGAGCTCCATCGGTCGATT+TGG 0.372599 5_3:-10006694 None:intergenic
AACTGACCTGAATTGTTATA+AGG 0.374079 5_3:-10006190 None:intergenic
GATGAAGTTCTCGCATGCCC+TGG 0.382051 5_3:-10007181 None:intergenic
GGATGACCTTATAACAATTC+AGG 0.382294 5_3:+10006184 Msa0797770:CDS
TCACCGACGAGGCATTTACT+AGG 0.383522 5_3:+10006162 Msa0797770:CDS
AAGATAACAATCTATGGGAT+TGG 0.396366 5_3:-10002348 None:intergenic
GAGTTCTTGTGAAAAGTTAG+TGG 0.396927 5_3:-10003234 None:intergenic
GTTGCTTCTTCCCCATTGCT+AGG 0.401850 5_3:-10002418 None:intergenic
TTCAAGGGAGCTCCAGTAAC+AGG 0.404366 5_3:-10003195 None:intergenic
ACTTGACCAGAAGGTTCTTC+TGG 0.406350 5_3:+10006311 Msa0797770:CDS
CAAAATCCAGAAGAACCTTC+TGG 0.412431 5_3:-10006317 None:intergenic
AACAGAATGGGCAACTGAAT+GGG 0.413642 5_3:+10002469 Msa0797770:CDS
GATTCAGATGTTCCAGCTCC+AGG 0.414464 5_3:-10008371 None:intergenic
CTCTTCTTCCTCATCTGGCT+CGG 0.430426 5_3:-10008180 None:intergenic
GGAGCTGGAACATCTGAATC+TGG 0.432526 5_3:+10008374 Msa0797770:CDS
CTGCCATCAGGTGTACAAAC+TGG 0.433550 5_3:-10002658 None:intergenic
ATCGACCGATGGAGCTCCTC+AGG 0.442437 5_3:+10006698 Msa0797770:CDS
CAGGAGGAAATCAAGATAAC+AGG 0.443423 5_3:+10008131 Msa0797770:intron
AATGAGATCTTGTTGCTTCA+AGG 0.444400 5_3:-10003211 None:intergenic
GTGAAAACTTTGTTTAGCAC+TGG 0.453174 5_3:-10005952 None:intergenic
GGCTCATGGTATAGTAATCC+TGG 0.456340 5_3:+10008353 Msa0797770:CDS
AGATAACAATCTATGGGATT+GGG 0.458370 5_3:-10002347 None:intergenic
AAACAAATGCTTAAAGAGCT+TGG 0.459982 5_3:+10006555 Msa0797770:CDS
TGAGAAGAATCCAAAGAAGA+AGG 0.463758 5_3:+10007095 Msa0797770:CDS
GACATGTTTATGTTATAGGC+TGG 0.464280 5_3:-10006522 None:intergenic
CTATGCATGTGGCTGGTGAC+AGG 0.466621 5_3:+10006817 Msa0797770:CDS
ACAGGTGTTGGCGGTGGTGT+TGG 0.468240 5_3:+10008401 Msa0797770:CDS
TTGCTTCTTCCCCATTGCTA+GGG 0.471389 5_3:-10002417 None:intergenic
ATGAGATCTTGTTGCTTCAA+GGG 0.472562 5_3:-10003210 None:intergenic
TTGGCAAATACTTGAAAGCT+AGG 0.473260 5_3:+10008420 Msa0797770:CDS
AAACAGAATGGGCAACTGAA+TGG 0.475308 5_3:+10002468 Msa0797770:CDS
TGGAAATGTCTTCTGCTATG+AGG 0.475926 5_3:+10006008 Msa0797770:CDS
TAAACCAAAACCCTAGCAAT+GGG 0.476283 5_3:+10002407 Msa0797770:exon
AACAGTGGCCCACATACTAA+TGG 0.478597 5_3:+10007468 Msa0797770:CDS
GGTCGGTCACTGTCATCAAC+AGG 0.480063 5_3:-10007600 None:intergenic
CCAAATTAGTCCACTCTGGA+AGG 0.483082 5_3:+10007427 Msa0797770:CDS
GTTAAAAGTCGTTACACTAC+TGG 0.485111 5_3:+10007000 Msa0797770:CDS
ACATCGAAGACGCTGCCATC+AGG 0.486187 5_3:-10002670 None:intergenic
GCCTATAACATAAACATGTC+GGG 0.491731 5_3:+10006525 Msa0797770:CDS
TACACTAGCAACAATGGAAA+AGG 0.495791 5_3:+10007575 Msa0797770:CDS
ACATCTGAATCTGGAGGTAC+AGG 0.497797 5_3:+10008383 Msa0797770:CDS
GTTCTTAACCAAAACAGAAT+GGG 0.498235 5_3:+10002457 Msa0797770:CDS
CTCACCATCTTTGCATTCAC+CGG 0.498409 5_3:-10006843 None:intergenic
GAAAGCTAGGAATGCTCCAC+CGG 0.498700 5_3:+10008433 Msa0797770:CDS
ATTGTGGCAGTCAAAACTAC+TGG 0.503952 5_3:+10005988 Msa0797770:CDS
GGAAAGGAAACTGCATTGCA+TGG 0.504017 5_3:+10006588 Msa0797770:CDS
TGTGAACGTGGATATTATAA+CGG 0.504461 5_3:+10007210 Msa0797770:CDS
GCTGCATCTGCCGCAGTACA+TGG 0.504884 5_3:+10006738 Msa0797770:CDS
TTGGTTTATCACTTCTGTGG+TGG 0.508591 5_3:-10002392 None:intergenic
ATGAAGTTCTCGCATGCCCT+GGG 0.508823 5_3:-10007180 None:intergenic
TGTTCTTAACCAAAACAGAA+TGG 0.518902 5_3:+10002456 Msa0797770:CDS
TCGACAGCAGCAGGTTCAGC+CGG 0.519443 5_3:-10008452 None:intergenic
AACTGGGAACCATTAGTATG+TGG 0.522616 5_3:-10007477 None:intergenic
TTTGCATTTCAGGACAAGGT+TGG 0.522665 5_3:+10008332 Msa0797770:intron
GGAAAATTTAAATATCTGGC+AGG 0.523175 5_3:-10008776 None:intergenic
CAACCCTTGCATGTTCATAG+TGG 0.524406 5_3:-10008812 None:intergenic
CGACACTGGTACAGCCGTTG+TGG 0.526101 5_3:+10008472 Msa0797770:CDS
TTCATCACGCTTTGTGAACG+TGG 0.527470 5_3:+10007198 Msa0797770:CDS
TGATGACAGTGACCGACCTC+TGG 0.527741 5_3:+10007605 Msa0797770:CDS
TGGTATAGTAATCCTGGAGC+TGG 0.532781 5_3:+10008359 Msa0797770:CDS
AAAAGGAAGACGTTTGAAAA+CGG 0.536043 5_3:-10002519 None:intergenic
TCCTAATGCACTTGACCAGA+AGG 0.536364 5_3:+10006302 Msa0797770:CDS
ATGATGTAGAAGTAAAAGAC+CGG 0.536884 5_3:-10007032 None:intergenic
GGAGGTACAGGTGTTGGCGG+TGG 0.538393 5_3:+10008395 Msa0797770:CDS
TGCACTGTGATATAGCGCCC+AGG 0.543902 5_3:+10007163 Msa0797770:CDS
AAAGAGCTTGGAACTGAGCA+AGG 0.545096 5_3:+10006567 Msa0797770:CDS
GTTCATAGTGGTTAATTACA+TGG 0.546602 5_3:-10008800 None:intergenic
GATCCTACTGGTACTGGTAG+AGG 0.546770 5_3:+10007360 Msa0797770:CDS
TGATTTGCACCGCCGTGTGG+AGG 0.547099 5_3:-10002276 None:intergenic
AGCCTATAACATAAACATGT+CGG 0.547101 5_3:+10006524 Msa0797770:CDS
CAAATTAGTCCACTCTGGAA+GGG 0.547791 5_3:+10007428 Msa0797770:CDS
GGCACCGGTGAATGCAAAGA+TGG 0.550158 5_3:+10006839 Msa0797770:CDS
GGTGGCGATCCTACTGGTAC+TGG 0.550338 5_3:+10007354 Msa0797770:CDS
GAAAGGAAACTGCATTGCAT+GGG 0.550522 5_3:+10006589 Msa0797770:CDS
GAGAAGAATCCAAAGAAGAA+GGG 0.558567 5_3:+10007096 Msa0797770:CDS
AAATTAGTCCACTCTGGAAG+GGG 0.560803 5_3:+10007429 Msa0797770:CDS
GAACCTGCTGCTGTCGACAC+TGG 0.561503 5_3:+10008458 Msa0797770:CDS
ATACAAGGTGGCGATCCTAC+TGG 0.561736 5_3:+10007348 Msa0797770:CDS
GTACCAGTGTCGACAGCAGC+AGG 0.562548 5_3:-10008461 None:intergenic
GACACTGGTACAGCCGTTGT+GGG 0.562924 5_3:+10008473 Msa0797770:CDS
GAATCTGGAGGTACAGGTGT+TGG 0.565131 5_3:+10008389 Msa0797770:CDS
TCTGGAGGTACAGGTGTTGG+CGG 0.566682 5_3:+10008392 Msa0797770:CDS
GTACAAACTGGAAACTCAAA+CGG 0.568509 5_3:-10002646 None:intergenic
AACTCCAAATTAGTCCACTC+TGG 0.569288 5_3:+10007423 Msa0797770:CDS
GTTTGATTTGCACCGCCGTG+TGG 0.569381 5_3:-10002279 None:intergenic
ACAGCAGCAGGTTCAGCCGG+TGG 0.572103 5_3:-10008449 None:intergenic
TTCAGGACAAGGTTGGCTCA+TGG 0.574231 5_3:+10008339 Msa0797770:intron
AGTTGAAGATAACAATCTAT+GGG 0.578635 5_3:-10002353 None:intergenic
TAAAATGGCAGCGAGTGCAG+CGG 0.579946 5_3:-10006643 None:intergenic
GAGTGCCTGAGGAGCTCCAT+CGG 0.581000 5_3:-10006703 None:intergenic
AAGAGAAAAGCAGCTGTCAG+TGG 0.581591 5_3:+10008500 Msa0797770:CDS
TGTGGCTGGTGACAGGGCAC+CGG 0.581705 5_3:+10006824 Msa0797770:CDS
AACACGCCGCTGAAAATCGC+CGG 0.583314 5_3:+10002315 Msa0797770:five_prime_UTR
AATTTGAAAATTGACGATGA+AGG 0.585312 5_3:+10006354 Msa0797770:CDS
TTTCCAGTTTGTACACCTGA+TGG 0.588037 5_3:+10002655 Msa0797770:CDS
TGGAAGGGGTGTAGTTAGCA+TGG 0.588160 5_3:+10007443 Msa0797770:CDS
CACCGACGAGGCATTTACTA+GGG 0.589724 5_3:+10006163 Msa0797770:CDS
ATTGACTACACTAGCAACAA+TGG 0.592417 5_3:+10007569 Msa0797770:CDS
TTAACCACTATGAACATGCA+AGG 0.592620 5_3:+10008808 Msa0797770:three_prime_UTR
ATCCCTAGTAAATGCCTCGT+CGG 0.595336 5_3:-10006165 None:intergenic
TCCTTACACCGAGCCAGATG+AGG 0.597914 5_3:+10008172 Msa0797770:CDS
GCTTGGAACTGAGCAAGGAA+AGG 0.602840 5_3:+10006572 Msa0797770:CDS
AGAATAGCTATGCATGTGGC+TGG 0.603645 5_3:+10006810 Msa0797770:CDS
ATAAACCAAAACCCTAGCAA+TGG 0.604679 5_3:+10002406 Msa0797770:exon
TAACCACTATGAACATGCAA+GGG 0.605007 5_3:+10008809 Msa0797770:three_prime_UTR
CACTGAATTTACCCACATTG+TGG 0.607025 5_3:+10005972 Msa0797770:CDS
GCACTGTGATATAGCGCCCA+GGG 0.612039 5_3:+10007164 Msa0797770:CDS
TAGTAAATGCCTCGTCGGTG+AGG 0.617674 5_3:-10006160 None:intergenic
TATGCATGTGGCTGGTGACA+GGG 0.618344 5_3:+10006818 Msa0797770:CDS
ACTGGGAACCATTAGTATGT+GGG 0.619509 5_3:-10007476 None:intergenic
ACAGAATGGGCAACTGAATG+GGG 0.621742 5_3:+10002470 Msa0797770:CDS
GTTGCACTCATGTTCCGTTG+TGG 0.623797 5_3:+10008727 Msa0797770:three_prime_UTR
AAAGGAAACTGCATTGCATG+GGG 0.624761 5_3:+10006590 Msa0797770:CDS
GAAGATTCCAAATCGACCGA+TGG 0.632221 5_3:+10006687 Msa0797770:CDS
AGAGGTGGTGAATCAATTTG+GGG 0.636786 5_3:+10007378 Msa0797770:CDS
TGATGTAGAAGTAAAAGACC+GGG 0.648897 5_3:-10007031 None:intergenic
GTAGTTAGCATGGCAAACAG+TGG 0.660220 5_3:+10007453 Msa0797770:CDS
TCTACAATACTGAGTGCCTG+AGG 0.667099 5_3:-10006714 None:intergenic
CCACCTCTACCAGTACCAGT+AGG 0.670311 5_3:-10007363 None:intergenic
CCTACTGGTACTGGTAGAGG+TGG 0.680494 5_3:+10007363 Msa0797770:CDS
GAATGGGCAACTGAATGGGG+AGG 0.681661 5_3:+10002473 Msa0797770:CDS
ATTTACGACTCACCAGAGGT+CGG 0.685790 5_3:-10007617 None:intergenic
TGCCAGAATAGCTATGCATG+TGG 0.688708 5_3:+10006806 Msa0797770:CDS
GAAGGAGCTCCTCACCGACG+AGG 0.690654 5_3:+10006151 Msa0797770:CDS
GCTGGAACATCTGAATCTGG+AGG 0.694916 5_3:+10008377 Msa0797770:CDS
GTACAACTGCATACAACACA+CGG 0.699245 5_3:+10007123 Msa0797770:CDS
CATAGTGGTTAATTACATGG+CGG 0.706231 5_3:-10008797 None:intergenic
AAGGAAACTGCATTGCATGG+GGG 0.711732 5_3:+10006591 Msa0797770:CDS
TGCACTTCTTCCATGTACTG+CGG 0.716775 5_3:-10006748 None:intergenic
TAACTACACCCCTTCCAGAG+TGG 0.717283 5_3:-10007437 None:intergenic
AAACCAAAACCCTAGCAATG+GGG 0.725097 5_3:+10002408 Msa0797770:exon
AAATAACAAGAAGACCACAA+CGG 0.757584 5_3:-10008741 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATCTTTTCTTATATAAA+TGG - chr5_3:10002757-10002776 None:intergenic 10.0%
!!! TTACCATATTTTATAATATA+TGG - chr5_3:10003171-10003190 None:intergenic 10.0%
!! AATAAATAAATATGACAAAA+CGG + chr5_3:10004099-10004118 Msa0797770:intron 10.0%
!! TTATCAATAGAATACATATT+TGG - chr5_3:10003110-10003129 None:intergenic 15.0%
!! ACTCCATATATTATAAAATA+TGG + chr5_3:10003165-10003184 Msa0797770:CDS 15.0%
!!! GATTGTATTTTCATATTTAA+GGG - chr5_3:10003536-10003555 None:intergenic 15.0%
!!! TGATTGTATTTTCATATTTA+AGG - chr5_3:10003537-10003556 None:intergenic 15.0%
!!! TTTTTTTTTGAAATATTGGT+AGG + chr5_3:10003601-10003620 Msa0797770:intron 15.0%
!!! TTTTTTTTGAAATATTGGTA+GGG + chr5_3:10003602-10003621 Msa0797770:intron 15.0%
!! AATTTAATCAATCGTAATAA+TGG + chr5_3:10003825-10003844 Msa0797770:intron 15.0%
!!! TGAATCTTATTTATTACAAT+AGG - chr5_3:10004018-10004037 None:intergenic 15.0%
!!! ATATGTGTTTACATTTTTAA+TGG + chr5_3:10004852-10004871 Msa0797770:intron 15.0%
!!! TATGTGTTTACATTTTTAAT+GGG + chr5_3:10004853-10004872 Msa0797770:intron 15.0%
!! CTATTGAAAATAGTTTAATT+TGG - chr5_3:10005633-10005652 None:intergenic 15.0%
!!! TTTTTATATATGTATGTTTG+TGG + chr5_3:10006086-10006105 Msa0797770:intron 15.0%
!!! TTTTATATATGTATGTTTGT+GGG + chr5_3:10006087-10006106 Msa0797770:intron 15.0%
!!! CATTCATACAATTTTTAAAA+AGG - chr5_3:10006935-10006954 None:intergenic 15.0%
!!! CTTTTTAAAAATTGTATGAA+TGG + chr5_3:10006933-10006952 Msa0797770:intron 15.0%
!!! ACTCATTAAATTTTCATTAT+GGG + chr5_3:10007850-10007869 Msa0797770:intron 15.0%
!! ATAAGTAATCTCAAAAATTA+TGG - chr5_3:10008255-10008274 None:intergenic 15.0%
!!! ATTTTTTTCTCACTTTTATA+AGG + chr5_3:10008281-10008300 Msa0797770:intron 15.0%
!! ACAAATTGTATTGAAAATTT+GGG - chr5_3:10008560-10008579 None:intergenic 15.0%
!! TACAAATTGTATTGAAAATT+TGG - chr5_3:10008561-10008580 None:intergenic 15.0%
!! AGATTAATCTTTGATCTATT+CGG - chr5_3:10002239-10002258 None:intergenic 20.0%
!!! TGAAAAATTGATTCAATGAA+AGG - chr5_3:10002581-10002600 None:intergenic 20.0%
!!! ATTCTATTGATAATAACTTG+TGG + chr5_3:10003117-10003136 Msa0797770:intron 20.0%
!! AAATATGAAAATACAATCAC+AGG + chr5_3:10003538-10003557 Msa0797770:intron 20.0%
!!! TTTTTTTGAAATATTGGTAG+GGG + chr5_3:10003603-10003622 Msa0797770:intron 20.0%
!! TTGATCATAATAGGATATTA+TGG + chr5_3:10004712-10004731 Msa0797770:intron 20.0%
!! TACTTTCTTCCTTATTATTT+GGG - chr5_3:10004991-10005010 None:intergenic 20.0%
!! TACATTGTACTATTATAGTA+TGG + chr5_3:10005169-10005188 Msa0797770:intron 20.0%
!!! AAAACTTTCAATTTTTAGTC+CGG - chr5_3:10005353-10005372 None:intergenic 20.0%
!!! AGTTTTTTCTGTTAGTTATT+TGG - chr5_3:10005547-10005566 None:intergenic 20.0%
!!! CGATTTTTTTATGTTATTTG+AGG + chr5_3:10005806-10005825 Msa0797770:intron 20.0%
!!! TTTTATGTTATTTGAGGATA+AGG + chr5_3:10005812-10005831 Msa0797770:intron 20.0%
!! ATACATAGAATAATGATTAC+TGG - chr5_3:10006959-10006978 None:intergenic 20.0%
!!! TCATAATCATTTTTTGTAAC+TGG - chr5_3:10007063-10007082 None:intergenic 20.0%
!! TTTGTACAATATGAAAAACT+GGG - chr5_3:10007496-10007515 None:intergenic 20.0%
!! ATTTGTACAATATGAAAAAC+TGG - chr5_3:10007497-10007516 None:intergenic 20.0%
!!! TCTACTTTTTTTTCTAAATC+AGG - chr5_3:10007743-10007762 None:intergenic 20.0%
!!! CACTCATTAAATTTTCATTA+TGG + chr5_3:10007849-10007868 Msa0797770:intron 20.0%
!! TTACATGCTTATTTATTCTT+TGG + chr5_3:10008104-10008123 Msa0797770:intron 20.0%
!! AAATGCAAACCAAATAATAA+GGG - chr5_3:10008321-10008340 None:intergenic 20.0%
!!! AATTTAAAGATTTTTCTGGA+TGG + chr5_3:10008525-10008544 Msa0797770:CDS 20.0%
! AGTTGAAGATAACAATCTAT+GGG - chr5_3:10002356-10002375 None:intergenic 25.0%
! AAGTTGAAGATAACAATCTA+TGG - chr5_3:10002357-10002376 None:intergenic 25.0%
! TATACTTTCATAAGCTATCT+TGG + chr5_3:10002810-10002829 Msa0797770:intron 25.0%
! TTGGAGAGTTTATGAAAATA+AGG + chr5_3:10002829-10002848 Msa0797770:intron 25.0%
! TATTTGCTTCATTGTATGTT+TGG + chr5_3:10002994-10003013 Msa0797770:intron 25.0%
!! CTTTTATATCAAAATCTCAG+CGG + chr5_3:10003052-10003071 Msa0797770:intron 25.0%
! AGAATACATATTTGGATTGA+CGG - chr5_3:10003102-10003121 None:intergenic 25.0%
!!! ATCATTTTTGTGCATTCTTT+TGG + chr5_3:10003278-10003297 Msa0797770:intron 25.0%
!! TACTATAGTCTAAACCATTT+TGG - chr5_3:10003436-10003455 None:intergenic 25.0%
!! TATCTCTCCTATTATGTTTT+GGG + chr5_3:10003457-10003476 Msa0797770:intron 25.0%
!! ACAAACACAACAACTTTTTA+TGG - chr5_3:10003502-10003521 None:intergenic 25.0%
! AATTAGTTAGTTAATTCCCT+TGG + chr5_3:10003633-10003652 Msa0797770:intron 25.0%
!! AGAAATTAAAAGTATGCCAA+GGG - chr5_3:10003652-10003671 None:intergenic 25.0%
! AAAAAAATGTCCATTACGTT+TGG - chr5_3:10003719-10003738 None:intergenic 25.0%
! TGTGTGTTAATTCTTTATCA+AGG + chr5_3:10003752-10003771 Msa0797770:intron 25.0%
!!! TAGTTGTTTTAACATTGATC+AGG + chr5_3:10003794-10003813 Msa0797770:intron 25.0%
! TTAATCAATCGTAATAATGG+TGG + chr5_3:10003828-10003847 Msa0797770:intron 25.0%
!!! GTATTCTGTTTTTTTACTCT+CGG - chr5_3:10004144-10004163 None:intergenic 25.0%
! AGAGTAAAAAAACAGAATAC+AGG + chr5_3:10004144-10004163 Msa0797770:intron 25.0%
! AAAAGAGGTAAATGAAGAAA+AGG + chr5_3:10004185-10004204 Msa0797770:intron 25.0%
! TTAAACTCAATGCTGTAATA+AGG - chr5_3:10004652-10004671 None:intergenic 25.0%
! AACACATATTTGCATGATAA+GGG - chr5_3:10004841-10004860 None:intergenic 25.0%
! AAACACATATTTGCATGATA+AGG - chr5_3:10004842-10004861 None:intergenic 25.0%
! CTACTTTCTTCCTTATTATT+TGG - chr5_3:10004992-10005011 None:intergenic 25.0%
! AATCAAAGTAACTAGAAAAG+TGG - chr5_3:10005018-10005037 None:intergenic 25.0%
!! AGTTACTTTGATTGTAATGA+AGG + chr5_3:10005025-10005044 Msa0797770:intron 25.0%
! TAAAGCTTGAAAAACAGAAA+AGG - chr5_3:10005069-10005088 None:intergenic 25.0%
! ATTGTACTATTATAGTATGG+AGG + chr5_3:10005172-10005191 Msa0797770:intron 25.0%
! TAACCATCAACTAATATAAG+CGG + chr5_3:10005287-10005306 Msa0797770:intron 25.0%
! TTAGTTATTTGGTATAGAGT+CGG - chr5_3:10005536-10005555 None:intergenic 25.0%
!!! TTTTGTTCTTTGAGATTTCA+TGG + chr5_3:10005727-10005746 Msa0797770:intron 25.0%
!!! TTTGTTCTTTGAGATTTCAT+GGG + chr5_3:10005728-10005747 Msa0797770:intron 25.0%
!!! CATATATTCATTTAGTTTGC+TGG + chr5_3:10005876-10005895 Msa0797770:intron 25.0%
! TAAACATCAAGACAAAAAAC+TGG + chr5_3:10006129-10006148 Msa0797770:CDS 25.0%
! AATTTGAAAATTGACGATGA+AGG + chr5_3:10006354-10006373 Msa0797770:CDS 25.0%
!!! TAGGTCAAAAAGAAGTATTT+AGG - chr5_3:10006872-10006891 None:intergenic 25.0%
! TTAATGAAGTTCTCAATTTC+AGG + chr5_3:10006978-10006997 Msa0797770:intron 25.0%
! CATAAAATTCCTGCATAAAA+TGG - chr5_3:10007328-10007347 None:intergenic 25.0%
!! AACTTCAAACATACAGTTTT+TGG + chr5_3:10007531-10007550 Msa0797770:CDS 25.0%
!! CTAAATCAGGTCTAAATTTT+TGG - chr5_3:10007730-10007749 None:intergenic 25.0%
! AAAGATAACAGTATGTACAA+TGG - chr5_3:10007774-10007793 None:intergenic 25.0%
! TGCAAAATATTGTAATCCTA+AGG - chr5_3:10007905-10007924 None:intergenic 25.0%
! AAATATCAACTCTTCTCTTA+AGG - chr5_3:10007995-10008014 None:intergenic 25.0%
! ATCCATTAACAATTATCAAC+TGG + chr5_3:10008055-10008074 Msa0797770:intron 25.0%
! TCCATTAACAATTATCAACT+GGG + chr5_3:10008056-10008075 Msa0797770:intron 25.0%
! TAAATAAGCATGTAATCCAT+TGG - chr5_3:10008099-10008118 None:intergenic 25.0%
! GAAATGCAAACCAAATAATA+AGG - chr5_3:10008322-10008341 None:intergenic 25.0%
!!! TATTATTTGGTTTGCATTTC+AGG + chr5_3:10008322-10008341 Msa0797770:intron 25.0%
!! GGTGAATTTAAAGATTTTTC+TGG + chr5_3:10008521-10008540 Msa0797770:CDS 25.0%
AGATAACAATCTATGGGATT+GGG - chr5_3:10002350-10002369 None:intergenic 30.0%
AAGATAACAATCTATGGGAT+TGG - chr5_3:10002351-10002370 None:intergenic 30.0%
!!! CTGTTTTGGTTAAGAACATT+CGG - chr5_3:10002454-10002473 None:intergenic 30.0%
TGTTCTTAACCAAAACAGAA+TGG + chr5_3:10002456-10002475 Msa0797770:CDS 30.0%
GTTCTTAACCAAAACAGAAT+GGG + chr5_3:10002457-10002476 Msa0797770:CDS 30.0%
AAAAGGAAGACGTTTGAAAA+CGG - chr5_3:10002522-10002541 None:intergenic 30.0%
TTGATTCAATGAAAGGATGA+AGG - chr5_3:10002574-10002593 None:intergenic 30.0%
! ATCATGACATACAACTTGTT+CGG - chr5_3:10002961-10002980 None:intergenic 30.0%
! GTATCTCTCCTATTATGTTT+TGG + chr5_3:10003456-10003475 Msa0797770:intron 30.0%
AAGTTGTTGTGTTTGTCAAA+TGG + chr5_3:10003506-10003525 Msa0797770:intron 30.0%
! CAGAAATTAAAAGTATGCCA+AGG - chr5_3:10003653-10003672 None:intergenic 30.0%
!!! CTTGGCATACTTTTAATTTC+TGG + chr5_3:10003651-10003670 Msa0797770:intron 30.0%
GGGTGGCTATAATAAAAATA+TGG + chr5_3:10003933-10003952 Msa0797770:intron 30.0%
GCTGCTAATAAAGATACTTA+TGG - chr5_3:10004041-10004060 None:intergenic 30.0%
TAAATATGACAAAACGGAGA+AGG + chr5_3:10004105-10004124 Msa0797770:intron 30.0%
AAAAAAACAGAATACAGGAC+AGG + chr5_3:10004149-10004168 Msa0797770:intron 30.0%
AAAAAACAGAATACAGGACA+GGG + chr5_3:10004150-10004169 Msa0797770:intron 30.0%
! TCTTCATTTACCTCTTTTCT+GGG - chr5_3:10004183-10004202 None:intergenic 30.0%
! TTCTTCATTTACCTCTTTTC+TGG - chr5_3:10004184-10004203 None:intergenic 30.0%
AAAGGAAATGACTAAGATAC+TGG + chr5_3:10004203-10004222 Msa0797770:intron 30.0%
AAGGAAATGACTAAGATACT+GGG + chr5_3:10004204-10004223 Msa0797770:intron 30.0%
ATTCTATCATCTCATTTGCA+TGG - chr5_3:10004283-10004302 None:intergenic 30.0%
CAAATGAGATGATAGAATGT+GGG + chr5_3:10004285-10004304 Msa0797770:intron 30.0%
!!! AAAGATATGCGGTTTTTTGT+TGG + chr5_3:10004391-10004410 Msa0797770:intron 30.0%
!!! GTTTTTTGTTGGCATTTCAT+AGG + chr5_3:10004402-10004421 Msa0797770:intron 30.0%
ATGAAATTAGACGTTACCTT+TGG + chr5_3:10004545-10004564 Msa0797770:intron 30.0%
TTTGACAAAATACCATGTGA+TGG - chr5_3:10004599-10004618 None:intergenic 30.0%
! ACAGCATTGAGTTTAATACA+TGG + chr5_3:10004656-10004675 Msa0797770:intron 30.0%
AAGAATTTCGTTAGAAAGTG+AGG - chr5_3:10004761-10004780 None:intergenic 30.0%
ACACATATTTGCATGATAAG+GGG - chr5_3:10004840-10004859 None:intergenic 30.0%
!! GGTAACACATTTGTTTTCTT+TGG + chr5_3:10004912-10004931 Msa0797770:intron 30.0%
!!! TTTGTTTTCTTTGGCTTTGA+TGG + chr5_3:10004921-10004940 Msa0797770:intron 30.0%
!! TTTGATGGATTAGAATGTGA+GGG + chr5_3:10004936-10004955 Msa0797770:intron 30.0%
! TACAATGCTGATTAAAGGAT+TGG + chr5_3:10005128-10005147 Msa0797770:intron 30.0%
TAGAACAGTATTAGAATCCT+AGG - chr5_3:10005330-10005349 None:intergenic 30.0%
TTCTCTTTCAGCTTAACTAT+TGG + chr5_3:10005462-10005481 Msa0797770:intron 30.0%
TGAGCAACAGTTACATATAT+TGG - chr5_3:10005605-10005624 None:intergenic 30.0%
AATTAGCAGTGTTAACACTA+AGG - chr5_3:10006050-10006069 None:intergenic 30.0%
!! CTGCTAATTTGATTTGTAGA+TGG + chr5_3:10006061-10006080 Msa0797770:intron 30.0%
TATGTATGTTTGTGGGAAAT+AGG + chr5_3:10006094-10006113 Msa0797770:intron 30.0%
AACTGACCTGAATTGTTATA+AGG - chr5_3:10006193-10006212 None:intergenic 30.0%
TTATAACAATTCAGGTCAGT+TGG + chr5_3:10006192-10006211 Msa0797770:intron 30.0%
AGAAAATATGGATGAATTGC+AGG - chr5_3:10006390-10006409 None:intergenic 30.0%
AGCCTATAACATAAACATGT+CGG + chr5_3:10006524-10006543 Msa0797770:CDS 30.0%
AAACAAATGCTTAAAGAGCT+TGG + chr5_3:10006555-10006574 Msa0797770:CDS 30.0%
ATGATGTAGAAGTAAAAGAC+CGG - chr5_3:10007035-10007054 None:intergenic 30.0%
TGTGAACGTGGATATTATAA+CGG + chr5_3:10007210-10007229 Msa0797770:CDS 30.0%
!!! TTGCTTTTCATAGAAGCATT+AGG + chr5_3:10007235-10007254 Msa0797770:CDS 30.0%
! TCTTATAGTCCATTTTATGC+AGG + chr5_3:10007316-10007335 Msa0797770:intron 30.0%
! TGCAGGAATTTTATGATACA+AGG + chr5_3:10007333-10007352 Msa0797770:intron 30.0%
! AGGAATTTTATGATACAAGG+TGG + chr5_3:10007336-10007355 Msa0797770:intron 30.0%
GAGTTAAGTTCATCCTTAAA+AGG - chr5_3:10007408-10007427 None:intergenic 30.0%
!! TTCAAACATACAGTTTTTGG+AGG + chr5_3:10007534-10007553 Msa0797770:CDS 30.0%
! ACATACTGTTATCTTTTGCA+CGG + chr5_3:10007778-10007797 Msa0797770:intron 30.0%
AATTTAATGAGTGAAACCCA+AGG - chr5_3:10007842-10007861 None:intergenic 30.0%
! ATTTGTGAACATTGAGGTTT+TGG + chr5_3:10007930-10007949 Msa0797770:intron 30.0%
TATTTAACAACAATGCTTGC+TGG + chr5_3:10008010-10008029 Msa0797770:intron 30.0%
ATTTAACAACAATGCTTGCT+GGG + chr5_3:10008011-10008030 Msa0797770:intron 30.0%
!! TTATTTATTCTTTGGCTTGC+AGG + chr5_3:10008112-10008131 Msa0797770:intron 30.0%
ATCATTTGCATTCTTCTCTT+TGG - chr5_3:10008216-10008235 None:intergenic 30.0%
GTGAACTAACCCTTATTATT+TGG + chr5_3:10008309-10008328 Msa0797770:intron 30.0%
! AATAGAATCATTTTGTCTCG+AGG + chr5_3:10008705-10008724 Msa0797770:three_prime_UTR 30.0%
AAATAACAAGAAGACCACAA+CGG - chr5_3:10008744-10008763 None:intergenic 30.0%
GGAAAATTTAAATATCTGGC+AGG - chr5_3:10008779-10008798 None:intergenic 30.0%
TGGCGGAAAATTTAAATATC+TGG - chr5_3:10008783-10008802 None:intergenic 30.0%
GTTCATAGTGGTTAATTACA+TGG - chr5_3:10008803-10008822 None:intergenic 30.0%
ATCTTTGATCTATTCGGCTT+CGG - chr5_3:10002233-10002252 None:intergenic 35.0%
!!! GTTTTGGTTTATCACTTCTG+TGG - chr5_3:10002398-10002417 None:intergenic 35.0%
ATAAACCAAAACCCTAGCAA+TGG + chr5_3:10002406-10002425 Msa0797770:exon 35.0%
TAAACCAAAACCCTAGCAAT+GGG + chr5_3:10002407-10002426 Msa0797770:exon 35.0%
GTACAAACTGGAAACTCAAA+CGG - chr5_3:10002649-10002668 None:intergenic 35.0%
!! ATAACTTGTGGTTTTCAACC+TGG + chr5_3:10003129-10003148 Msa0797770:intron 35.0%
!! TAACTTGTGGTTTTCAACCT+GGG + chr5_3:10003130-10003149 Msa0797770:intron 35.0%
TATGGTAAACATCCTGTTAC+TGG + chr5_3:10003183-10003202 Msa0797770:CDS 35.0%
! ATGAGATCTTGTTGCTTCAA+GGG - chr5_3:10003213-10003232 None:intergenic 35.0%
! AATGAGATCTTGTTGCTTCA+AGG - chr5_3:10003214-10003233 None:intergenic 35.0%
GAGTTCTTGTGAAAAGTTAG+TGG - chr5_3:10003237-10003256 None:intergenic 35.0%
! ACTTTTCACAAGAACTCAGA+AGG + chr5_3:10003240-10003259 Msa0797770:CDS 35.0%
CATGATTGAGTTCATTGCTT+AGG + chr5_3:10003321-10003340 Msa0797770:intron 35.0%
CATATATGCGTATTGCCTAT+TGG + chr5_3:10003410-10003429 Msa0797770:intron 35.0%
!! TCTAAACCATTTTGGCCAAT+AGG - chr5_3:10003428-10003447 None:intergenic 35.0%
CCATCATCCCAAAACATAAT+AGG - chr5_3:10003467-10003486 None:intergenic 35.0%
!!! CCTATTATGTTTTGGGATGA+TGG + chr5_3:10003464-10003483 Msa0797770:intron 35.0%
!! ATCGTAATAATGGTGGATGA+TGG + chr5_3:10003835-10003854 Msa0797770:intron 35.0%
!! TCGTAATAATGGTGGATGAT+GGG + chr5_3:10003836-10003855 Msa0797770:intron 35.0%
AAGATACTGGGTAGATAATC+AGG + chr5_3:10004216-10004235 Msa0797770:intron 35.0%
AGATACTGGGTAGATAATCA+GGG + chr5_3:10004217-10004236 Msa0797770:intron 35.0%
GCAAATGAGATGATAGAATG+TGG + chr5_3:10004284-10004303 Msa0797770:intron 35.0%
GTAACGTCTAATTTCATAGC+AGG - chr5_3:10004542-10004561 None:intergenic 35.0%
AAAATACCATGTGATGGCTA+TGG - chr5_3:10004593-10004612 None:intergenic 35.0%
AACTCAATGCTGTAATAAGG+TGG - chr5_3:10004649-10004668 None:intergenic 35.0%
!! GTGTAGTCAATTTTAGCACA+TGG + chr5_3:10004683-10004702 Msa0797770:intron 35.0%
TGGAAGACGTTGATCATAAT+AGG + chr5_3:10004703-10004722 Msa0797770:intron 35.0%
!! ATGGTGTTGTTTGTTCTATG+TGG + chr5_3:10004731-10004750 Msa0797770:intron 35.0%
ACCGCATAATCTTTGTCAAA+TGG + chr5_3:10004889-10004908 Msa0797770:intron 35.0%
CCCATTTGACAAAGATTATG+CGG - chr5_3:10004893-10004912 None:intergenic 35.0%
CCGCATAATCTTTGTCAAAT+GGG + chr5_3:10004890-10004909 Msa0797770:intron 35.0%
CGCATAATCTTTGTCAAATG+GGG + chr5_3:10004891-10004910 Msa0797770:intron 35.0%
!! CTTTGATGGATTAGAATGTG+AGG + chr5_3:10004935-10004954 Msa0797770:intron 35.0%
ATTAGAATGTGAGGGTCTTT+AGG + chr5_3:10004944-10004963 Msa0797770:intron 35.0%
TGTCACACACCCAAATAATA+AGG + chr5_3:10004979-10004998 Msa0797770:intron 35.0%
! TGGTGTACAATGCTGATTAA+AGG + chr5_3:10005123-10005142 Msa0797770:intron 35.0%
AAGATTCTGTACCACTGTAA+TGG + chr5_3:10005205-10005224 Msa0797770:intron 35.0%
! ATGCCGCTTATATTAGTTGA+TGG - chr5_3:10005293-10005312 None:intergenic 35.0%
ACTAATATAAGCGGCATGTT+TGG + chr5_3:10005296-10005315 Msa0797770:intron 35.0%
CTAATATAAGCGGCATGTTT+GGG + chr5_3:10005297-10005316 Msa0797770:intron 35.0%
GGATTCTAATACTGTTCTAC+CGG + chr5_3:10005331-10005350 Msa0797770:intron 35.0%
CTAACGCGAAAGAAACAAAA+TGG + chr5_3:10005434-10005453 Msa0797770:intron 35.0%
TATGCTTAGTTGACCAGTTT+CGG - chr5_3:10005697-10005716 None:intergenic 35.0%
! TGTTATTTGAGGATAAGGTG+TGG + chr5_3:10005817-10005836 Msa0797770:intron 35.0%
! GGGATGCATTTATGATTTTC+TGG + chr5_3:10005842-10005861 Msa0797770:intron 35.0%
! GTGAAAACTTTGTTTAGCAC+TGG - chr5_3:10005955-10005974 None:intergenic 35.0%
CATCAAGACAAAAAACTGGA+AGG + chr5_3:10006133-10006152 Msa0797770:CDS 35.0%
GGATGACCTTATAACAATTC+AGG + chr5_3:10006184-10006203 Msa0797770:CDS 35.0%
CACATAGACAAACATCAACA+TGG - chr5_3:10006270-10006289 None:intergenic 35.0%
GATCAGTAGCTCAGAAAATA+TGG - chr5_3:10006402-10006421 None:intergenic 35.0%
GACATGTTTATGTTATAGGC+TGG - chr5_3:10006525-10006544 None:intergenic 35.0%
GCCTATAACATAAACATGTC+GGG + chr5_3:10006525-10006544 Msa0797770:CDS 35.0%
TCCCGACATGTTTATGTTAT+AGG - chr5_3:10006529-10006548 None:intergenic 35.0%
! TGGAAAGGCACAAAAAGAAA+GGG + chr5_3:10006620-10006639 Msa0797770:CDS 35.0%
!! AGCAGTTTTATCACTTGATG+AGG - chr5_3:10006787-10006806 None:intergenic 35.0%
TATGCATGAGATGTATCACT+AGG - chr5_3:10006895-10006914 None:intergenic 35.0%
GTTAAAAGTCGTTACACTAC+TGG + chr5_3:10007000-10007019 Msa0797770:CDS 35.0%
TGATGTAGAAGTAAAAGACC+GGG - chr5_3:10007034-10007053 None:intergenic 35.0%
TGAGAAGAATCCAAAGAAGA+AGG + chr5_3:10007095-10007114 Msa0797770:CDS 35.0%
GAGAAGAATCCAAAGAAGAA+GGG + chr5_3:10007096-10007115 Msa0797770:CDS 35.0%
TGTACATATCCCTTCTTCTT+TGG - chr5_3:10007108-10007127 None:intergenic 35.0%
GTCACTCTTGATTTACTACA+AGG - chr5_3:10007286-10007305 None:intergenic 35.0%
TAGAGGTGGTGAATCAATTT+GGG + chr5_3:10007377-10007396 Msa0797770:CDS 35.0%
! AATTTGGGGAAAGCCTTTTA+AGG + chr5_3:10007392-10007411 Msa0797770:CDS 35.0%
ATTGACTACACTAGCAACAA+TGG + chr5_3:10007569-10007588 Msa0797770:CDS 35.0%
TACACTAGCAACAATGGAAA+AGG + chr5_3:10007575-10007594 Msa0797770:CDS 35.0%
ATTAATTTACGACTCACCAG+AGG - chr5_3:10007624-10007643 None:intergenic 35.0%
AAACCAGAAAAAGAGAGAGT+GGG - chr5_3:10007673-10007692 None:intergenic 35.0%
AAAACCAGAAAAAGAGAGAG+TGG - chr5_3:10007674-10007693 None:intergenic 35.0%
AATATTGTAATCCTAAGGCC+TGG - chr5_3:10007900-10007919 None:intergenic 35.0%
! ACTGTCATTTGTGAACATTG+AGG + chr5_3:10007924-10007943 Msa0797770:intron 35.0%
!! GCCCAGTTGATAATTGTTAA+TGG - chr5_3:10008060-10008079 None:intergenic 35.0%
TTGGCAAATACTTGAAAGCT+AGG + chr5_3:10008420-10008439 Msa0797770:CDS 35.0%
! TTTTCTCTTCTTTCCCACAA+CGG - chr5_3:10008489-10008508 None:intergenic 35.0%
CATAGTGGTTAATTACATGG+CGG - chr5_3:10008800-10008819 None:intergenic 35.0%
TTGGTTTATCACTTCTGTGG+TGG - chr5_3:10002395-10002414 None:intergenic 40.0%
AAACCAAAACCCTAGCAATG+GGG + chr5_3:10002408-10002427 Msa0797770:exon 40.0%
! TTCAGTTGCCCATTCTGTTT+TGG - chr5_3:10002468-10002487 None:intergenic 40.0%
AAACAGAATGGGCAACTGAA+TGG + chr5_3:10002468-10002487 Msa0797770:CDS 40.0%
AACAGAATGGGCAACTGAAT+GGG + chr5_3:10002469-10002488 Msa0797770:CDS 40.0%
! GAAAACGGTGCGATTTTCTT+TGG - chr5_3:10002507-10002526 None:intergenic 40.0%
TTTCCAGTTTGTACACCTGA+TGG + chr5_3:10002655-10002674 Msa0797770:CDS 40.0%
! GACATACAACTTGTTCGGAT+TGG - chr5_3:10002956-10002975 None:intergenic 40.0%
GTATTGCCTATTGGCCAAAA+TGG + chr5_3:10003419-10003438 Msa0797770:intron 40.0%
TCATTGAATGCAAAAGCTCG+AGG + chr5_3:10003682-10003701 Msa0797770:intron 40.0%
CCATTACGTTTGGCAGAATA+AGG - chr5_3:10003709-10003728 None:intergenic 40.0%
CCTTATTCTGCCAAACGTAA+TGG + chr5_3:10003706-10003725 Msa0797770:intron 40.0%
TATGTTGCTACGGCAGATTT+AGG - chr5_3:10003874-10003893 None:intergenic 40.0%
TCATTTGCATGGATCGTAAC+TGG - chr5_3:10004272-10004291 None:intergenic 40.0%
GAACCTTTGATCTATACGAC+CGG + chr5_3:10004321-10004340 Msa0797770:intron 40.0%
AGAGTGGGAACAAAGATATG+CGG + chr5_3:10004380-10004399 Msa0797770:intron 40.0%
ATTTAGCGACTCTTTCCACT+AGG + chr5_3:10004499-10004518 Msa0797770:intron 40.0%
TAACAATTCAGCAAGCCTAG+TGG - chr5_3:10004517-10004536 None:intergenic 40.0%
!! TTGTACACCATGCTGATTCT+CGG - chr5_3:10005113-10005132 None:intergenic 40.0%
AAATCCCAGACTTAGGCTAT+AGG - chr5_3:10005236-10005255 None:intergenic 40.0%
CTGAAACAAATCCCAGACTT+AGG - chr5_3:10005243-10005262 None:intergenic 40.0%
! CTAAGTCTGGGATTTGTTTC+AGG + chr5_3:10005241-10005260 Msa0797770:intron 40.0%
!! GCGTTAGCTTGTAAGAATTC+AGG - chr5_3:10005421-10005440 None:intergenic 40.0%
TAGTTCACATACCTAGCGTT+GGG + chr5_3:10005489-10005508 Msa0797770:intron 40.0%
ATTTGAGGATAAGGTGTGGA+TGG + chr5_3:10005821-10005840 Msa0797770:intron 40.0%
TTTGAGGATAAGGTGTGGAT+GGG + chr5_3:10005822-10005841 Msa0797770:intron 40.0%
! GCTGGCTACTTTGTATTGAA+TGG + chr5_3:10005894-10005913 Msa0797770:intron 40.0%
CACTGAATTTACCCACATTG+TGG + chr5_3:10005972-10005991 Msa0797770:CDS 40.0%
!!! AGTTTTGACTGCCACAATGT+GGG - chr5_3:10005986-10006005 None:intergenic 40.0%
!!! TAGTTTTGACTGCCACAATG+TGG - chr5_3:10005987-10006006 None:intergenic 40.0%
ATTGTGGCAGTCAAAACTAC+TGG + chr5_3:10005988-10006007 Msa0797770:CDS 40.0%
TGGAAATGTCTTCTGCTATG+AGG + chr5_3:10006008-10006027 Msa0797770:CDS 40.0%
!! GCTATGAGGTTTGTTTTTCC+AGG + chr5_3:10006022-10006041 Msa0797770:intron 40.0%
AGTGTTAACACTAAGGATCC+TGG - chr5_3:10006043-10006062 None:intergenic 40.0%
CAAAATCCAGAAGAACCTTC+TGG - chr5_3:10006320-10006339 None:intergenic 40.0%
GAAAGGAAACTGCATTGCAT+GGG + chr5_3:10006589-10006608 Msa0797770:CDS 40.0%
AAAGGAAACTGCATTGCATG+GGG + chr5_3:10006590-10006609 Msa0797770:CDS 40.0%
! GTGGAAAGGCACAAAAAGAA+AGG + chr5_3:10006619-10006638 Msa0797770:CDS 40.0%
TTGTGATCGTGCAGCTAAAA+TGG - chr5_3:10006661-10006680 None:intergenic 40.0%
CATGAGATGTATCACTAGGT+AGG - chr5_3:10006891-10006910 None:intergenic 40.0%
GTACAACTGCATACAACACA+CGG + chr5_3:10007123-10007142 Msa0797770:CDS 40.0%
CTACAAGGACAAAGACACAA+AGG - chr5_3:10007271-10007290 None:intergenic 40.0%
GTAGAGGTGGTGAATCAATT+TGG + chr5_3:10007376-10007395 Msa0797770:CDS 40.0%
AGAGGTGGTGAATCAATTTG+GGG + chr5_3:10007378-10007397 Msa0797770:CDS 40.0%
AACTCCAAATTAGTCCACTC+TGG + chr5_3:10007423-10007442 Msa0797770:CDS 40.0%
! CAAATTAGTCCACTCTGGAA+GGG + chr5_3:10007428-10007447 Msa0797770:CDS 40.0%
! AAATTAGTCCACTCTGGAAG+GGG + chr5_3:10007429-10007448 Msa0797770:CDS 40.0%
ACTGGGAACCATTAGTATGT+GGG - chr5_3:10007479-10007498 None:intergenic 40.0%
AACTGGGAACCATTAGTATG+TGG - chr5_3:10007480-10007499 None:intergenic 40.0%
AACCAGAAAAAGAGAGAGTG+GGG - chr5_3:10007672-10007691 None:intergenic 40.0%
TTGGACTATCTTGAGTACAG+TGG + chr5_3:10007949-10007968 Msa0797770:intron 40.0%
!! TTTATTCTTTGGCTTGCAGG+AGG + chr5_3:10008115-10008134 Msa0797770:intron 40.0%
CAGGAGGAAATCAAGATAAC+AGG + chr5_3:10008131-10008150 Msa0797770:intron 40.0%
!! TTGGTTTGCATTTCAGGACA+AGG + chr5_3:10008328-10008347 Msa0797770:intron 40.0%
TTTGCATTTCAGGACAAGGT+TGG + chr5_3:10008332-10008351 Msa0797770:intron 40.0%
! GATTTTCAGCGGCGTGTTAT+TGG - chr5_3:10002313-10002332 None:intergenic 45.0%
CAATCTATGGGATTGGGTTC+CGG - chr5_3:10002344-10002363 None:intergenic 45.0%
TTGCTTCTTCCCCATTGCTA+GGG - chr5_3:10002420-10002439 None:intergenic 45.0%
ACAGAATGGGCAACTGAATG+GGG + chr5_3:10002470-10002489 Msa0797770:CDS 45.0%
! TGCAGTTGTGAGTTGAGCTT+CGG + chr5_3:10003344-10003363 Msa0797770:intron 45.0%
TTGAGCTTCGGATTGACGTA+GGG + chr5_3:10003356-10003375 Msa0797770:intron 45.0%
GCCATGTCAGTATGTTGCTA+CGG - chr5_3:10003884-10003903 None:intergenic 45.0%
GCATGTTATGCTGTAGCCTA+TGG + chr5_3:10003902-10003921 Msa0797770:intron 45.0%
TGTAGCCTATGGTGAAAGCA+GGG + chr5_3:10003913-10003932 Msa0797770:intron 45.0%
! TCTGAAATGACGTGTGAGAG+TGG + chr5_3:10004364-10004383 Msa0797770:intron 45.0%
CTGAAATGACGTGTGAGAGT+GGG + chr5_3:10004365-10004384 Msa0797770:intron 45.0%
TGCTGCACATCATACTACCT+TGG + chr5_3:10004621-10004640 Msa0797770:intron 45.0%
GCTGTAATAAGGTGGTACCA+AGG - chr5_3:10004641-10004660 None:intergenic 45.0%
TATAGGCAGCACCATTACAG+TGG - chr5_3:10005219-10005238 None:intergenic 45.0%
CATGTTTGGGAGAACTTCCT+AGG + chr5_3:10005310-10005329 Msa0797770:intron 45.0%
CTAGTTCACATACCTAGCGT+TGG + chr5_3:10005488-10005507 Msa0797770:intron 45.0%
! GCTTTTCTTTGTTCCTCTGC+AGG + chr5_3:10005916-10005935 Msa0797770:intron 45.0%
ACAGTGATATTCTCCTGCAG+AGG - chr5_3:10005932-10005951 None:intergenic 45.0%
ATCCCTAGTAAATGCCTCGT+CGG - chr5_3:10006168-10006187 None:intergenic 45.0%
TCCTAATGCACTTGACCAGA+AGG + chr5_3:10006302-10006321 Msa0797770:CDS 45.0%
ACCTTCTGGTCAAGTGCATT+AGG - chr5_3:10006306-10006325 None:intergenic 45.0%
ACTTGACCAGAAGGTTCTTC+TGG + chr5_3:10006311-10006330 Msa0797770:CDS 45.0%
AAAGAGCTTGGAACTGAGCA+AGG + chr5_3:10006567-10006586 Msa0797770:CDS 45.0%
GGAAAGGAAACTGCATTGCA+TGG + chr5_3:10006588-10006607 Msa0797770:CDS 45.0%
AAGGAAACTGCATTGCATGG+GGG + chr5_3:10006591-10006610 Msa0797770:CDS 45.0%
GAAGATTCCAAATCGACCGA+TGG + chr5_3:10006687-10006706 Msa0797770:CDS 45.0%
TCTACAATACTGAGTGCCTG+AGG - chr5_3:10006717-10006736 None:intergenic 45.0%
TGCACTTCTTCCATGTACTG+CGG - chr5_3:10006751-10006770 None:intergenic 45.0%
TGCCAGAATAGCTATGCATG+TGG + chr5_3:10006806-10006825 Msa0797770:CDS 45.0%
AGCCACATGCATAGCTATTC+TGG - chr5_3:10006811-10006830 None:intergenic 45.0%
AGAATAGCTATGCATGTGGC+TGG + chr5_3:10006810-10006829 Msa0797770:CDS 45.0%
CTCACCATCTTTGCATTCAC+CGG - chr5_3:10006846-10006865 None:intergenic 45.0%
TTCATCACGCTTTGTGAACG+TGG + chr5_3:10007198-10007217 Msa0797770:CDS 45.0%
CAAGGACAAAGACACAAAGG+TGG - chr5_3:10007268-10007287 None:intergenic 45.0%
!! CCTTCCAGAGTGGACTAATT+TGG - chr5_3:10007430-10007449 None:intergenic 45.0%
CCAAATTAGTCCACTCTGGA+AGG + chr5_3:10007427-10007446 Msa0797770:CDS 45.0%
GTAGTTAGCATGGCAAACAG+TGG + chr5_3:10007453-10007472 Msa0797770:CDS 45.0%
AACAGTGGCCCACATACTAA+TGG + chr5_3:10007468-10007487 Msa0797770:CDS 45.0%
!! ACAGTTTTTGGAGGCGTAGT+TGG + chr5_3:10007543-10007562 Msa0797770:CDS 45.0%
ATTTACGACTCACCAGAGGT+CGG - chr5_3:10007620-10007639 None:intergenic 45.0%
ACCAGAAAAAGAGAGAGTGG+GGG - chr5_3:10007671-10007690 None:intergenic 45.0%
TACCTTTGCATCTGTCTAGC+TGG + chr5_3:10007810-10007829 Msa0797770:intron 45.0%
AACCAGCTAGACAGATGCAA+AGG - chr5_3:10007815-10007834 None:intergenic 45.0%
TTGCATCTGTCTAGCTGGTT+TGG + chr5_3:10007815-10007834 Msa0797770:intron 45.0%
TAATCCTAAGGCCTGGAACA+GGG - chr5_3:10007893-10007912 None:intergenic 45.0%
! CATTGGTTGTGTTGACAGCA+TGG - chr5_3:10008082-10008101 None:intergenic 45.0%
CATGCTGTCAACACAACCAA+TGG + chr5_3:10008080-10008099 Msa0797770:intron 45.0%
GGCTCATGGTATAGTAATCC+TGG + chr5_3:10008353-10008372 Msa0797770:CDS 45.0%
TGGTATAGTAATCCTGGAGC+TGG + chr5_3:10008359-10008378 Msa0797770:CDS 45.0%
! ACATCTGAATCTGGAGGTAC+AGG + chr5_3:10008383-10008402 Msa0797770:CDS 45.0%
AAGAGAAAAGCAGCTGTCAG+TGG + chr5_3:10008500-10008519 Msa0797770:CDS 45.0%
!!! TTTTTTTTTTTTTGAAATAT+TGG + chr5_3:10003597-10003616 Msa0797770:intron 5.0%
CCACCCAAAAAACCTCCACA+CGG + chr5_3:10002264-10002283 Msa0797770:five_prime_UTR 50.0%
! CTTCCCCATTGCTAGGGTTT+TGG - chr5_3:10002414-10002433 None:intergenic 50.0%
GTTGCTTCTTCCCCATTGCT+AGG - chr5_3:10002421-10002440 None:intergenic 50.0%
ACGCACGCGCAGCAATAAAA+AGG - chr5_3:10002539-10002558 None:intergenic 50.0%
CTGCCATCAGGTGTACAAAC+TGG - chr5_3:10002661-10002680 None:intergenic 50.0%
! GTGGTTTTCAACCTGGGTTC+AGG + chr5_3:10003136-10003155 Msa0797770:intron 50.0%
GGAGTTATGTTCCTGAACCC+AGG - chr5_3:10003150-10003169 None:intergenic 50.0%
TTCAAGGGAGCTCCAGTAAC+AGG - chr5_3:10003198-10003217 None:intergenic 50.0%
GTTGAGCTTCGGATTGACGT+AGG + chr5_3:10003355-10003374 Msa0797770:intron 50.0%
TGAGCTTCGGATTGACGTAG+GGG + chr5_3:10003357-10003376 Msa0797770:intron 50.0%
TCGAGTGTAGCGTACTTGGT+AGG + chr5_3:10003561-10003580 Msa0797770:intron 50.0%
GCCGTAGCAACATACTGACA+TGG + chr5_3:10003880-10003899 Msa0797770:intron 50.0%
CTGTAGCCTATGGTGAAAGC+AGG + chr5_3:10003912-10003931 Msa0797770:intron 50.0%
GCCCTTGAACCACTGAACAA+CGG + chr5_3:10004059-10004078 Msa0797770:intron 50.0%
CCCGTTGTTCAGTGGTTCAA+GGG - chr5_3:10004063-10004082 None:intergenic 50.0%
CCCTTGAACCACTGAACAAC+GGG + chr5_3:10004060-10004079 Msa0797770:intron 50.0%
ACCCGTTGTTCAGTGGTTCA+AGG - chr5_3:10004064-10004083 None:intergenic 50.0%
GAACCACTGAACAACGGGTA+CGG + chr5_3:10004065-10004084 Msa0797770:intron 50.0%
AACCACTGAACAACGGGTAC+GGG + chr5_3:10004066-10004085 Msa0797770:intron 50.0%
GGGATTGAGACCCAGAAAAG+AGG + chr5_3:10004170-10004189 Msa0797770:intron 50.0%
GCTCCGGTCGTATAGATCAA+AGG - chr5_3:10004327-10004346 None:intergenic 50.0%
GATCTATACGACCGGAGCAT+TGG + chr5_3:10004329-10004348 Msa0797770:intron 50.0%
!! TACGACCGGAGCATTGGAAA+TGG + chr5_3:10004335-10004354 Msa0797770:intron 50.0%
!! ACGACCGGAGCATTGGAAAT+GGG + chr5_3:10004336-10004355 Msa0797770:intron 50.0%
CACTCCCATTTCCAATGCTC+CGG - chr5_3:10004343-10004362 None:intergenic 50.0%
ATGGCCTGACAGCTTTCACA+CGG - chr5_3:10004574-10004593 None:intergenic 50.0%
TGTCTCTCCGAGAATCAGCA+TGG + chr5_3:10005103-10005122 Msa0797770:intron 50.0%
TGCTGCCTATAGCCTAAGTC+TGG + chr5_3:10005228-10005247 Msa0797770:intron 50.0%
GCTGCCTATAGCCTAAGTCT+GGG + chr5_3:10005229-10005248 Msa0797770:intron 50.0%
! TTCACATACCTAGCGTTGGG+AGG + chr5_3:10005492-10005511 Msa0797770:intron 50.0%
! TCACATACCTAGCGTTGGGA+GGG + chr5_3:10005493-10005512 Msa0797770:intron 50.0%
ATACAAACCCTCCCAACGCT+AGG - chr5_3:10005503-10005522 None:intergenic 50.0%
GCGTTGGGAGGGTTTGTATA+TGG + chr5_3:10005504-10005523 Msa0797770:intron 50.0%
GCTGAGATATCCTCCGAAAC+TGG + chr5_3:10005681-10005700 Msa0797770:intron 50.0%
GCTTAGTTGACCAGTTTCGG+AGG - chr5_3:10005694-10005713 None:intergenic 50.0%
TAGTAAATGCCTCGTCGGTG+AGG - chr5_3:10006163-10006182 None:intergenic 50.0%
! TCACCGACGAGGCATTTACT+AGG + chr5_3:10006162-10006181 Msa0797770:CDS 50.0%
! CACCGACGAGGCATTTACTA+GGG + chr5_3:10006163-10006182 Msa0797770:CDS 50.0%
GCTTGGAACTGAGCAAGGAA+AGG + chr5_3:10006572-10006591 Msa0797770:CDS 50.0%
TAAAATGGCAGCGAGTGCAG+CGG - chr5_3:10006646-10006665 None:intergenic 50.0%
TATGCATGTGGCTGGTGACA+GGG + chr5_3:10006818-10006837 Msa0797770:CDS 50.0%
ATGAAGTTCTCGCATGCCCT+GGG - chr5_3:10007183-10007202 None:intergenic 50.0%
ATACAAGGTGGCGATCCTAC+TGG + chr5_3:10007348-10007367 Msa0797770:CDS 50.0%
!! GATCCTACTGGTACTGGTAG+AGG + chr5_3:10007360-10007379 Msa0797770:CDS 50.0%
TAACTACACCCCTTCCAGAG+TGG - chr5_3:10007440-10007459 None:intergenic 50.0%
! TGGAAGGGGTGTAGTTAGCA+TGG + chr5_3:10007443-10007462 Msa0797770:CDS 50.0%
!! GTTTTTGGAGGCGTAGTTGG+TGG + chr5_3:10007546-10007565 Msa0797770:CDS 50.0%
! ACCCCCACTCTCTCTTTTTC+TGG + chr5_3:10007667-10007686 Msa0797770:intron 50.0%
!! TGTCTAGCTGGTTTGGACCT+TGG + chr5_3:10007822-10007841 Msa0797770:intron 50.0%
!! GTCTAGCTGGTTTGGACCTT+GGG + chr5_3:10007823-10007842 Msa0797770:intron 50.0%
AGTCTGCATATCCCTGTTCC+AGG + chr5_3:10007879-10007898 Msa0797770:intron 50.0%
ATATCCCTGTTCCAGGCCTT+AGG + chr5_3:10007886-10007905 Msa0797770:intron 50.0%
GTAATCCTAAGGCCTGGAAC+AGG - chr5_3:10007894-10007913 None:intergenic 50.0%
CTCTTCTTCCTCATCTGGCT+CGG - chr5_3:10008183-10008202 None:intergenic 50.0%
GCTTGCTCTTCTTCCTCATC+TGG - chr5_3:10008188-10008207 None:intergenic 50.0%
! TTCAGGACAAGGTTGGCTCA+TGG + chr5_3:10008339-10008358 Msa0797770:intron 50.0%
GATTCAGATGTTCCAGCTCC+AGG - chr5_3:10008374-10008393 None:intergenic 50.0%
GGAGCTGGAACATCTGAATC+TGG + chr5_3:10008374-10008393 Msa0797770:CDS 50.0%
GCTGGAACATCTGAATCTGG+AGG + chr5_3:10008377-10008396 Msa0797770:CDS 50.0%
! GAATCTGGAGGTACAGGTGT+TGG + chr5_3:10008389-10008408 Msa0797770:CDS 50.0%
GAAAGCTAGGAATGCTCCAC+CGG + chr5_3:10008433-10008452 Msa0797770:CDS 50.0%
GTTGCACTCATGTTCCGTTG+TGG + chr5_3:10008727-10008746 Msa0797770:three_prime_UTR 50.0%
!!! CCGTGTGGAGGTTTTTTGGG+TGG - chr5_3:10002267-10002286 None:intergenic 55.0%
!!! CCGCCGTGTGGAGGTTTTTT+GGG - chr5_3:10002270-10002289 None:intergenic 55.0%
CCCAAAAAACCTCCACACGG+CGG + chr5_3:10002267-10002286 Msa0797770:five_prime_UTR 55.0%
!!! ACCGCCGTGTGGAGGTTTTT+TGG - chr5_3:10002271-10002290 None:intergenic 55.0%
!! GTTTGATTTGCACCGCCGTG+TGG - chr5_3:10002282-10002301 None:intergenic 55.0%
AACACGCCGCTGAAAATCGC+CGG + chr5_3:10002315-10002334 Msa0797770:five_prime_UTR 55.0%
! CGGTTTCCGGCGATTTTCAG+CGG - chr5_3:10002324-10002343 None:intergenic 55.0%
CGCTGAAAATCGCCGGAAAC+CGG + chr5_3:10002322-10002341 Msa0797770:five_prime_UTR 55.0%
TGGGATTGGGTTCCGGTTTC+CGG - chr5_3:10002337-10002356 None:intergenic 55.0%
GAATGGGCAACTGAATGGGG+AGG + chr5_3:10002473-10002492 Msa0797770:CDS 55.0%
ACATCGAAGACGCTGCCATC+AGG - chr5_3:10002673-10002692 None:intergenic 55.0%
CAGGTCGAGTGTAGCGTACT+TGG + chr5_3:10003557-10003576 Msa0797770:intron 55.0%
AGCCTATGGTGAAAGCAGGG+TGG + chr5_3:10003916-10003935 Msa0797770:intron 55.0%
AGCCACCCTGCTTTCACCAT+AGG - chr5_3:10003921-10003940 None:intergenic 55.0%
ATCCCGTACCCGTTGTTCAG+TGG - chr5_3:10004071-10004090 None:intergenic 55.0%
!! CGGAGCATTGGAAATGGGAG+TGG + chr5_3:10004341-10004360 Msa0797770:intron 55.0%
AGCTTTCACACGGAGGCCAA+AGG - chr5_3:10004564-10004583 None:intergenic 55.0%
GTCAGGCCATAGCCATCACA+TGG + chr5_3:10004584-10004603 Msa0797770:intron 55.0%
GAAACTGCATTGCATGGGGG+AGG + chr5_3:10006594-10006613 Msa0797770:CDS 55.0%
AGGAGCTCCATCGGTCGATT+TGG - chr5_3:10006697-10006716 None:intergenic 55.0%
CTATGCATGTGGCTGGTGAC+AGG + chr5_3:10006817-10006836 Msa0797770:CDS 55.0%
!! GGCACCGGTGAATGCAAAGA+TGG + chr5_3:10006839-10006858 Msa0797770:CDS 55.0%
TGCACTGTGATATAGCGCCC+AGG + chr5_3:10007163-10007182 Msa0797770:CDS 55.0%
GCACTGTGATATAGCGCCCA+GGG + chr5_3:10007164-10007183 Msa0797770:CDS 55.0%
GATGAAGTTCTCGCATGCCC+TGG - chr5_3:10007184-10007203 None:intergenic 55.0%
CCACCTCTACCAGTACCAGT+AGG - chr5_3:10007366-10007385 None:intergenic 55.0%
!! CCTACTGGTACTGGTAGAGG+TGG + chr5_3:10007363-10007382 Msa0797770:CDS 55.0%
GGTCGGTCACTGTCATCAAC+AGG - chr5_3:10007603-10007622 None:intergenic 55.0%
TGATGACAGTGACCGACCTC+TGG + chr5_3:10007605-10007624 Msa0797770:CDS 55.0%
TCCTTACACCGAGCCAGATG+AGG + chr5_3:10008172-10008191 Msa0797770:CDS 55.0%
!! TCCTCATCTGGCTCGGTGTA+AGG - chr5_3:10008176-10008195 None:intergenic 55.0%
!! TCTGGAGGTACAGGTGTTGG+CGG + chr5_3:10008392-10008411 Msa0797770:CDS 55.0%
GACACTGGTACAGCCGTTGT+GGG + chr5_3:10008473-10008492 Msa0797770:CDS 55.0%
! TGATTTGCACCGCCGTGTGG+AGG - chr5_3:10002279-10002298 None:intergenic 60.0%
GCCTCCGTGTGAAAGCTGTC+AGG + chr5_3:10004567-10004586 Msa0797770:intron 60.0%
GCCTGACAGCTTTCACACGG+AGG - chr5_3:10004571-10004590 None:intergenic 60.0%
ACTGCATTGCATGGGGGAGG+TGG + chr5_3:10006597-10006616 Msa0797770:CDS 60.0%
ATCGACCGATGGAGCTCCTC+AGG + chr5_3:10006698-10006717 Msa0797770:CDS 60.0%
GAGTGCCTGAGGAGCTCCAT+CGG - chr5_3:10006706-10006725 None:intergenic 60.0%
GCTGCATCTGCCGCAGTACA+TGG + chr5_3:10006738-10006757 Msa0797770:CDS 60.0%
ACACTACTGGCGCTGCTTCC+CGG + chr5_3:10007013-10007032 Msa0797770:CDS 60.0%
GGTGGCGATCCTACTGGTAC+TGG + chr5_3:10007354-10007373 Msa0797770:CDS 60.0%
!! ACAGGTGTTGGCGGTGGTGT+TGG + chr5_3:10008401-10008420 Msa0797770:CDS 60.0%
TCGACAGCAGCAGGTTCAGC+CGG - chr5_3:10008455-10008474 None:intergenic 60.0%
GAACCTGCTGCTGTCGACAC+TGG + chr5_3:10008458-10008477 Msa0797770:CDS 60.0%
!! GTACCAGTGTCGACAGCAGC+AGG - chr5_3:10008464-10008483 None:intergenic 60.0%
CGACACTGGTACAGCCGTTG+TGG + chr5_3:10008472-10008491 Msa0797770:CDS 60.0%
GAAGGAGCTCCTCACCGACG+AGG + chr5_3:10006151-10006170 Msa0797770:CDS 65.0%
GCATTGCATGGGGGAGGTGG+TGG + chr5_3:10006600-10006619 Msa0797770:CDS 65.0%
!! GCATGGGGGAGGTGGTGGAA+AGG + chr5_3:10006605-10006624 Msa0797770:CDS 65.0%
TGTGGCTGGTGACAGGGCAC+CGG + chr5_3:10006824-10006843 Msa0797770:CDS 65.0%
!! GGAGGTACAGGTGTTGGCGG+TGG + chr5_3:10008395-10008414 Msa0797770:CDS 65.0%
ACAGCAGCAGGTTCAGCCGG+TGG - chr5_3:10008452-10008471 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 10002230 10008829 10002230 ID=Msa0797770;Name=Msa0797770
chr5_3 mRNA 10002230 10008829 10002230 ID=Msa0797770-mRNA-1;Parent=Msa0797770;Name=Msa0797770-mRNA-1;_AED=0.12;_eAED=0.12;_QI=195|1|1|1|1|1|11|279|592
chr5_3 exon 10002230 10002552 10002230 ID=Msa0797770-mRNA-1:exon:4274;Parent=Msa0797770-mRNA-1
chr5_3 exon 10002633 10002695 10002633 ID=Msa0797770-mRNA-1:exon:4275;Parent=Msa0797770-mRNA-1
chr5_3 exon 10003158 10003261 10003158 ID=Msa0797770-mRNA-1:exon:4276;Parent=Msa0797770-mRNA-1
chr5_3 exon 10005938 10006029 10005938 ID=Msa0797770-mRNA-1:exon:4277;Parent=Msa0797770-mRNA-1
chr5_3 exon 10006116 10006205 10006116 ID=Msa0797770-mRNA-1:exon:4278;Parent=Msa0797770-mRNA-1
chr5_3 exon 10006300 10006375 10006300 ID=Msa0797770-mRNA-1:exon:4279;Parent=Msa0797770-mRNA-1
chr5_3 exon 10006499 10006860 10006499 ID=Msa0797770-mRNA-1:exon:4280;Parent=Msa0797770-mRNA-1
chr5_3 exon 10007000 10007256 10007000 ID=Msa0797770-mRNA-1:exon:4281;Parent=Msa0797770-mRNA-1
chr5_3 exon 10007338 10007626 10007338 ID=Msa0797770-mRNA-1:exon:4282;Parent=Msa0797770-mRNA-1
chr5_3 exon 10008134 10008244 10008134 ID=Msa0797770-mRNA-1:exon:4283;Parent=Msa0797770-mRNA-1
chr5_3 exon 10008344 10008829 10008344 ID=Msa0797770-mRNA-1:exon:4284;Parent=Msa0797770-mRNA-1
chr5_3 five_prime_UTR 10002230 10002424 10002230 ID=Msa0797770-mRNA-1:five_prime_utr;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10002425 10002552 10002425 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10002633 10002695 10002633 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10003158 10003261 10003158 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10005938 10006029 10005938 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10006116 10006205 10006116 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10006300 10006375 10006300 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10006499 10006860 10006499 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10007000 10007256 10007000 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10007338 10007626 10007338 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10008134 10008244 10008134 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 CDS 10008344 10008550 10008344 ID=Msa0797770-mRNA-1:cds;Parent=Msa0797770-mRNA-1
chr5_3 three_prime_UTR 10008551 10008829 10008551 ID=Msa0797770-mRNA-1:three_prime_utr;Parent=Msa0797770-mRNA-1
Gene Sequence

>Msa0797770

ATGGGGAAGAAGCAACACAGCAAAGACCGAATGTTCTTAACCAAAACAGAATGGGCAACTGAATGGGGAGGTTACAAATCCAAAGAAAATCGCACCGTTTTCAAACGTCTTCCTTTTTATTGCTGCGCACTTACTTTTACTCCGTTTGAGTTTCCAGTTTGTACACCTGATGGCAGCGTCTTCGATGTTATGAACATAACTCCATATATTATAAAATATGGTAAACATCCTGTTACTGGAGCTCCCTTGAAGCAACAAGATCTCATTCCACTAACTTTTCACAAGAACTCAGAAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACCCACATTGTGGCAGTCAAAACTACTGGAAATGTCTTCTGCTATGAGGCTGTTAAAGAGTTAAACATCAAGACAAAAAACTGGAAGGAGCTCCTCACCGACGAGGCATTTACTAGGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACCAGAAGGTTCTTCTGGATTTTGATCATGTTAAACAGAATTTGAAAATTGACGATGAAGAACTACAGAAAATGAGTTCAGATCCAGCCTATAACATAAACATGTCGGGAGATATCAAACAAATGCTTAAAGAGCTTGGAACTGAGCAAGGAAAGGAAACTGCATTGCATGGGGGAGGTGGTGGAAAGGCACAAAAAGAAAGGGCCGCTGCACTCGCTGCCATTTTAGCTGCACGATCACAAGTTAAAGAAGATTCCAAATCGACCGATGGAGCTCCTCAGGCACTCAGTATTGTAGATGCTGCATCTGCCGCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCAGAATAGCTATGCATGTGGCTGGTGACAGGGCACCGGTGAATGCAAAGATGGTTAAAAGTCGTTACACTACTGGCGCTGCTTCCCGGTCTTTTACTTCTACATCATATGATCCAGTTACAAAAAATGATTATGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACAACACACGGTGATTTGAACATTGAGCTGCACTGTGATATAGCGCCCAGGGCATGCGAGAACTTCATCACGCTTTGTGAACGTGGATATTATAACGGAGTTGCTTTTCATAGAAGCATTAGGAATTTTATGATACAAGGTGGCGATCCTACTGGTACTGGTAGAGGTGGTGAATCAATTTGGGGAAAGCCTTTTAAGGATGAACTTAACTCCAAATTAGTCCACTCTGGAAGGGGTGTAGTTAGCATGGCAAACAGTGGCCCACATACTAATGGTTCCCAGTTTTTCATATTGTACAAATCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGCGTAGTTGGTGGATTGACTACACTAGCAACAATGGAAAAGGTTCCTGTTGATGACAGTGACCGACCTCTGGAGGAAATCAAGATAACAGGTGTCACAACTTTTGTCAATCCTTACACCGAGCCAGATGAGGAAGAAGAGCAAGCTAATGCCAAAGAGAAGAATGCAAATGATGAAGAAAATGACAAGGTTGGCTCATGGTATAGTAATCCTGGAGCTGGAACATCTGAATCTGGAGGTACAGGTGTTGGCGGTGGTGTTGGCAAATACTTGAAAGCTAGGAATGCTCCACCGGCTGAACCTGCTGCTGTCGACACTGGTACAGCCGTTGTGGGAAAGAAGAGAAAAGCAGCTGTCAGTGGTGAATTTAAAGATTTTTCTGGATGGTAG
Protein sequence

>Msa0797770

MGKKQHSKDRMFLTKTEWATEWGGYKSKENRTVFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMNITPYIIKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEAFTRDDLITIQNPNALDQKVLLDFDHVKQNLKIDDEELQKMSSDPAYNINMSGDIKQMLKELGTEQGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSTDGAPQALSIVDAASAAVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDYEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLATMEKVPVDDSDRPLEEIKITGVTTFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESGGTGVGGGVGKYLKARNAPPAEPAAVDTGTAVVGKKRKAAVSGEFKDFSGW*