AlfalfaGEDB | Msa0347160

M. sativa cultivar zhongmu-4 / Msa0347160

KEGG: K17080
GO: GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204
PFAM: PF01145.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347160	XP_024635709.1	99.281	278	2	0	1	278	1	278	0.0	560

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347160	sp\|O04331\|PHB3_ARATH	82.609	276	47	1	1	275	1	276	4.76e-170	474

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347160	B7FJH0	99.281	278	2	0	1	278	1	278	0.0	560

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029270	Msa0347160	0.803351	3.633325e-49	-8.615850e-47
Msa0070700	Msa0347160	0.800455	1.430061e-48	-8.615850e-47
Msa0115400	Msa0347160	0.807665	4.524815e-50	-8.615850e-47
Msa0144370	Msa0347160	0.801183	1.015197e-48	-8.615850e-47
Msa0347160	Msa0402650	0.802842	4.630305e-49	-8.615850e-47
Msa0347160	Msa0449210	0.802707	4.936637e-49	-8.615850e-47
Msa0347160	Msa0467380	0.823136	1.629316e-53	-8.615850e-47
Msa0347160	Msa0488880	0.839308	1.712167e-57	-8.615850e-47
Msa0347160	Msa0615710	0.808061	3.725973e-50	-8.615850e-47
Msa0347160	Msa0689260	0.803977	2.694482e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347160	MtrunA17_Chr3g0079011	99.281	278	2	0	1	278	1	278	0.0	560
Msa0347160	MtrunA17_Chr8g0356051	89.130	276	29	1	1	275	1	276	0.0	504
Msa0347160	MtrunA17_Chr2g0325011	51.429	280	128	4	3	278	8	283	3.02e-92	274
Msa0347160	MtrunA17_Chr4g0040101	50.566	265	129	2	10	274	12	274	6.93e-89	266
Msa0347160	MtrunA17_Chr5g0444361	56.983	179	75	2	1	178	1	178	3.03e-62	194
Msa0347160	MtrunA17_Chr5g0444371	51.685	178	61	2	1	178	2	154	2.01e-50	163
Msa0347160	MtrunA17_Chr6g0449171	58.955	134	17	1	91	224	1	96	1.16e-41	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347160	AT5G40770.1	82.609	276	47	1	1	275	1	276	4.84e-171	474
Msa0347160	AT3G27280.1	80.645	279	53	1	1	278	1	279	7.06e-169	468
Msa0347160	AT3G27280.2	80.645	279	53	1	1	278	1	279	7.06e-169	468
Msa0347160	AT5G14300.1	66.171	269	64	2	11	278	4	246	1.47e-118	340
Msa0347160	AT1G03860.1	52.239	268	122	2	1	263	1	267	5.98e-92	274
Msa0347160	AT1G03860.3	52.239	268	122	2	1	263	1	267	5.98e-92	274
Msa0347160	AT4G28510.1	51.969	254	121	1	10	263	15	267	4.22e-89	266
Msa0347160	AT5G44140.1	52.157	255	121	1	10	264	15	268	8.80e-87	260
Msa0347160	AT2G20530.2	50.996	251	121	2	13	263	17	265	1.73e-85	257
Msa0347160	AT2G20530.1	50.996	251	121	2	13	263	17	265	1.73e-85	257

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Find 111 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGCTCAGATGAGAT+AGG	0.471367	3_1:-8077025	None:intergenic
AAATGGATGAGAATGTGTGA+GGG	0.679561	3_1:-8072949	None:intergenic
AACCTAGCACGCGTCGCTTT+CGG	0.327851	3_1:+8072755	Msa0347160:CDS
AACTCATTTCCTCATCCCAT+GGG	0.550217	3_1:+8072892	Msa0347160:CDS
AAGATCTTTGGTACCGGAAA+TGG	0.355446	3_1:-8072966	None:intergenic
AAGTAGAATATTGAAATCCT+TGG	0.533739	3_1:-8074348	None:intergenic
AATGTCTCTTACCTTCCTGG+TGG	0.667494	3_1:+8075988	Msa0347160:CDS
ACAAAAGTTAGAAATGAACT+TGG	0.549173	3_1:+8077064	Msa0347160:three_prime_UTR
ACAACTCTTAACAGGTAATG+AGG	0.502279	3_1:+8074229	Msa0347160:intron
ACCGTCGACGGTGTAGAGAG+AGG	0.647102	3_1:-8072807	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTAACTAATAGCTTATAG+TGG	+	chr3_1:8073484-8073503	Msa0347160:intron	30.0%
GGTCAAAAGGACTTATAATT+TGG	-	chr3_1:8073554-8073573	None:intergenic	30.0%
TTTCCAATGAAATGGTCAAA+AGG	-	chr3_1:8073567-8073586	None:intergenic	30.0%
GTAAAGTGACTTATACTTTG+GGG	+	chr3_1:8073692-8073711	Msa0347160:intron	30.0%
TAAGCTTATAGCTTATAAGC+TGG	-	chr3_1:8073989-8074008	None:intergenic	30.0%
GTAATTTATAGGGACTGAAT+AGG	+	chr3_1:8074090-8074109	Msa0347160:intron	30.0%
GCTATTACTCATTTGTCATA+TGG	+	chr3_1:8074380-8074399	Msa0347160:CDS	30.0%
ATTACTCATTTGTCATATGG+TGG	+	chr3_1:8074383-8074402	Msa0347160:CDS	30.0%
GCTTCAAATACAATACAATC+TGG	+	chr3_1:8074753-8074772	Msa0347160:intron	30.0%
AACAAACACAAATCAGTTCT+AGG	-	chr3_1:8074822-8074841	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	8072557	8077339	8072557	ID=Msa0347160;Name=Msa0347160
chr3_1	mRNA	8072557	8077339	8072557	ID=Msa0347160-mRNA-1;Parent=Msa0347160;Name=Msa0347160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=132\|1\|1\|1\|0.5\|0.2\|5\|417\|278
chr3_1	exon	8072557	8072567	8072557	ID=Msa0347160-mRNA-1:exon:2279;Parent=Msa0347160-mRNA-1
chr3_1	exon	8072601	8073100	8072601	ID=Msa0347160-mRNA-1:exon:2280;Parent=Msa0347160-mRNA-1
chr3_1	exon	8074243	8074417	8074243	ID=Msa0347160-mRNA-1:exon:2281;Parent=Msa0347160-mRNA-1
chr3_1	exon	8075765	8076052	8075765	ID=Msa0347160-mRNA-1:exon:2282;Parent=Msa0347160-mRNA-1
chr3_1	exon	8076928	8077339	8076928	ID=Msa0347160-mRNA-1:exon:2283;Parent=Msa0347160-mRNA-1
chr3_1	five_prime_UTR	8072557	8072567	8072557	ID=Msa0347160-mRNA-1:five_prime_utr;Parent=Msa0347160-mRNA-1
chr3_1	five_prime_UTR	8072601	8072721	8072601	ID=Msa0347160-mRNA-1:five_prime_utr;Parent=Msa0347160-mRNA-1
chr3_1	CDS	8072722	8073100	8072722	ID=Msa0347160-mRNA-1:cds;Parent=Msa0347160-mRNA-1
chr3_1	CDS	8074243	8074417	8074243	ID=Msa0347160-mRNA-1:cds;Parent=Msa0347160-mRNA-1
chr3_1	CDS	8075765	8076047	8075765	ID=Msa0347160-mRNA-1:cds;Parent=Msa0347160-mRNA-1
chr3_1	three_prime_UTR	8076048	8076052	8076048	ID=Msa0347160-mRNA-1:three_prime_utr;Parent=Msa0347160-mRNA-1
chr3_1	three_prime_UTR	8076928	8077339	8076928	ID=Msa0347160-mRNA-1:three_prime_utr;Parent=Msa0347160-mRNA-1

Gene Sequence

>Msa0347160

ATGGGAAGCAATCAAGCAGCAAACATCCTCTCAAACCTAGCACGCGTCGCTTTCGGTCTCGGCGCCGCCGCAACCGCCGTCAACTCCTCTCTCTACACCGTCGACGGTGGCCAACGCGCCGTCCTCTTCGACAGATTCCGCGGCATCCTTTCCGAATCAGTTGGCGAAGGAACTCATTTCCTCATCCCATGGGTTCAAAAGCCTTACGTCTTCGATATCCGCACTCGCCCTCACACATTCTCATCCATTTCCGGTACCAAAGATCTTCAGATGGTGAATCTCACTCTTCGTGTTCTCTCTCGTCCTGATACTCAACGTCTTCCTACTATTGTTCAGAATCTCGGTCTTGAATATGACGAGAAGGTTCTTCCTTCAATCGGTAATGAGGTTTTGAAAGCTGTTGTTGCTCAGTTTAATGCTGATCAGCTTCTTACGGATAGGCCTCAGGTTTCGGCTCTTGTTAGGGATAGTCTTGTGAGAAGGGCCAAGGATTTCAATATTCTACTTGATGATGTTGCTATTACTCATTTGTCATATGGTGGTGAATTCTCTAGGGCTGTTGAGCAGAAGCAGGTGGCACAGCAAGAGGCAGAGAGGTCTAAGTTTGTTGTGATGAAGGCGGAACAGGAGCGTCGTGCTGCGATCATCCGTGCTGAGGGAGAAAGTGATGCTGCAAAGCTGATTTCTGATGCTACTGCTGTTGCTGGTATGGGGTTGATTGAGCTTAGGAGGATTGAGGCTTCCAGGGAAATTGCCGCTACTTTGGCCAAGTCTCCTAATGTCTCTTACCTTCCTGGTGGAAAGAACATGCTCATGGCTCTTAATCCTTCACGTTGA

Protein sequence

>Msa0347160

MGSNQAANILSNLARVAFGLGAAATAVNSSLYTVDGGQRAVLFDRFRGILSESVGEGTHFLIPWVQKPYVFDIRTRPHTFSSISGTKDLQMVNLTLRVLSRPDTQRLPTIVQNLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTDRPQVSALVRDSLVRRAKDFNILLDDVAITHLSYGGEFSRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESDAAKLISDATAVAGMGLIELRRIEASREIAATLAKSPNVSYLPGGKNMLMALNPSR*