AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0347160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347160 MtrunA17_Chr3g0079011 99.281 278 2 0 1 278 1 278 0.0 560
Msa0347160 MtrunA17_Chr8g0356051 89.130 276 29 1 1 275 1 276 0.0 504
Msa0347160 MtrunA17_Chr2g0325011 51.429 280 128 4 3 278 8 283 3.02e-92 274
Msa0347160 MtrunA17_Chr4g0040101 50.566 265 129 2 10 274 12 274 6.93e-89 266
Msa0347160 MtrunA17_Chr5g0444361 56.983 179 75 2 1 178 1 178 3.03e-62 194
Msa0347160 MtrunA17_Chr5g0444371 51.685 178 61 2 1 178 2 154 2.01e-50 163
Msa0347160 MtrunA17_Chr6g0449171 58.955 134 17 1 91 224 1 96 1.16e-41 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347160 AT5G40770.1 82.609 276 47 1 1 275 1 276 4.84e-171 474
Msa0347160 AT3G27280.1 80.645 279 53 1 1 278 1 279 7.06e-169 468
Msa0347160 AT3G27280.2 80.645 279 53 1 1 278 1 279 7.06e-169 468
Msa0347160 AT5G14300.1 66.171 269 64 2 11 278 4 246 1.47e-118 340
Msa0347160 AT1G03860.1 52.239 268 122 2 1 263 1 267 5.98e-92 274
Msa0347160 AT1G03860.3 52.239 268 122 2 1 263 1 267 5.98e-92 274
Msa0347160 AT4G28510.1 51.969 254 121 1 10 263 15 267 4.22e-89 266
Msa0347160 AT5G44140.1 52.157 255 121 1 10 264 15 268 8.80e-87 260
Msa0347160 AT2G20530.2 50.996 251 121 2 13 263 17 265 1.73e-85 257
Msa0347160 AT2G20530.1 50.996 251 121 2 13 263 17 265 1.73e-85 257
Msa0347160 AT1G03860.2 54.680 203 91 1 61 263 1 202 7.76e-74 225

Find 111 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGGTTTCGGCTCTTGTT+AGG 0.240010 3_1:+8074306 Msa0347160:CDS
TTATCAACCATTTAGCTCTA+AGG 0.256935 3_1:+8077185 Msa0347160:three_prime_UTR
CCTAATGTCTCTTACCTTCC+TGG 0.262402 3_1:+8075985 Msa0347160:CDS
CTAAGGGTACTTGTGTGTTT+GGG 0.268967 3_1:+8077202 Msa0347160:three_prime_UTR
CACACATTCTCATCCATTTC+CGG 0.270266 3_1:+8072953 Msa0347160:CDS
TCTAAGGGTACTTGTGTGTT+TGG 0.275144 3_1:+8077201 Msa0347160:three_prime_UTR
TACGGATAGGCCTCAGGTTT+CGG 0.283193 3_1:+8074295 Msa0347160:CDS
TCTGATGCTACTGCTGTTGC+TGG 0.297902 3_1:+8075895 Msa0347160:CDS
TTAGGAGGATTGAGGCTTCC+AGG 0.308845 3_1:+8075935 Msa0347160:CDS
AACCTAGCACGCGTCGCTTT+CGG 0.327851 3_1:+8072755 Msa0347160:CDS
ATTCACCATCTGAAGATCTT+TGG 0.335078 3_1:-8072978 None:intergenic
GTAGGAAGACGTTGAGTATC+AGG 0.347514 3_1:-8073025 None:intergenic
AAGATCTTTGGTACCGGAAA+TGG 0.355446 3_1:-8072966 None:intergenic
TGCTACTGCTGTTGCTGGTA+TGG 0.357125 3_1:+8075900 Msa0347160:CDS
CAAGTACCCTTAGAGCTAAA+TGG 0.365819 3_1:-8077192 None:intergenic
GCTACTGCTGTTGCTGGTAT+GGG 0.368570 3_1:+8075901 Msa0347160:CDS
GCTATTACTCATTTGTCATA+TGG 0.377706 3_1:+8074380 Msa0347160:CDS
GAGAGAGAGAAGAGAGAGAA+AGG 0.380060 3_1:-8072692 None:intergenic
TGGTTATTTGTCGTGGTAGT+TGG 0.391876 3_1:+8077266 Msa0347160:three_prime_UTR
GAAATGAAAAGAAAGGGTTT+TGG 0.394266 3_1:-8072626 None:intergenic
GCACGCGTCGCTTTCGGTCT+CGG 0.397952 3_1:+8072761 Msa0347160:CDS
CAGGGAAATTGCCGCTACTT+TGG 0.409034 3_1:+8075954 Msa0347160:CDS
AGTTCCTTCGCCAACTGATT+CGG 0.418731 3_1:-8072873 None:intergenic
TGTTGTGATGAAGGCGGAAC+AGG 0.423261 3_1:+8075816 Msa0347160:CDS
GTATGGGGTTGATTGAGCTT+AGG 0.424876 3_1:+8075917 Msa0347160:CDS
CCAGGAAGGTAAGAGACATT+AGG 0.436894 3_1:-8075985 None:intergenic
TAATGCTGATCAGCTTCTTA+CGG 0.440478 3_1:+8074277 Msa0347160:CDS
TGCTGCTTGATTGCTTCCCA+TGG 0.442091 3_1:-8072720 None:intergenic
TCAGGTTTCGGCTCTTGTTA+GGG 0.442315 3_1:+8074307 Msa0347160:CDS
CCGAGATTCTGAACAATAGT+AGG 0.443468 3_1:-8073043 None:intergenic
CCTACTATTGTTCAGAATCT+CGG 0.444298 3_1:+8073043 Msa0347160:CDS
AGAGGAGTTGACGGCGGTTG+CGG 0.445413 3_1:-8072789 None:intergenic
GTCTAAGTTTGTTGTGATGA+AGG 0.448310 3_1:+8075807 Msa0347160:CDS
AGAGAGAGAAGAGAGAGAAA+GGG 0.451552 3_1:-8072691 None:intergenic
GTAATGATATTACCGATTGA+AGG 0.458986 3_1:-8073091 None:intergenic
GCTTCTTACGGATAGGCCTC+AGG 0.461424 3_1:+8074289 Msa0347160:CDS
ATTTGTCGTGGTAGTTGGAT+TGG 0.463165 3_1:+8077271 Msa0347160:three_prime_UTR
AAACCTTGCTCAGATGAGAT+AGG 0.471367 3_1:-8077025 None:intergenic
TGGGGTTGATTGAGCTTAGG+AGG 0.474046 3_1:+8075920 Msa0347160:CDS
ATGAAGTGAAATGAAAAGAA+AGG 0.483215 3_1:-8072633 None:intergenic
GGCGCGTTGGCCACCGTCGA+CGG 0.487014 3_1:-8072819 None:intergenic
GTGTCATGGCATGCTTGGAT+TGG 0.493671 3_1:+8076942 Msa0347160:three_prime_UTR
TATCAACCATTTAGCTCTAA+GGG 0.495611 3_1:+8077186 Msa0347160:three_prime_UTR
GAAGCAGGTGGCACAGCAAG+AGG 0.501217 3_1:+8075777 Msa0347160:CDS
ACAACTCTTAACAGGTAATG+AGG 0.502279 3_1:+8074229 Msa0347160:intron
TGAAGTGAAATGAAAAGAAA+GGG 0.504220 3_1:-8072632 None:intergenic
TGGATTGGATCATTGCCGCT+TGG 0.507495 3_1:+8076957 Msa0347160:three_prime_UTR
GTTGGATTGGAGAGTTAAAG+AGG 0.512717 3_1:+8077284 Msa0347160:three_prime_UTR
GATTGAGCTTAGGAGGATTG+AGG 0.519488 3_1:+8075927 Msa0347160:CDS
TAGGGATAGTCTTGTGAGAA+GGG 0.523460 3_1:+8074325 Msa0347160:CDS
GAACTCATTTCCTCATCCCA+TGG 0.525793 3_1:+8072891 Msa0347160:CDS
TAAGGGTACTTGTGTGTTTG+GGG 0.526207 3_1:+8077203 Msa0347160:three_prime_UTR
GAGAAGGTTCTTCCTTCAAT+CGG 0.527364 3_1:+8073079 Msa0347160:CDS
CAAAGTAGCGGCAATTTCCC+TGG 0.531408 3_1:-8075953 None:intergenic
CATATGGTGGTGAATTCTCT+AGG 0.533003 3_1:+8074396 Msa0347160:CDS
TTAGGGATAGTCTTGTGAGA+AGG 0.533036 3_1:+8074324 Msa0347160:CDS
AAGTAGAATATTGAAATCCT+TGG 0.533739 3_1:-8074348 None:intergenic
TGCTGCGATCATCCGTGCTG+AGG 0.540308 3_1:+8075846 Msa0347160:CDS
CAGGGCTGTTGAGCAGAAGC+AGG 0.541558 3_1:+8075762 Msa0347160:intron
CTTAATCCTTCACGTTGATG+AGG 0.542506 3_1:+8076030 Msa0347160:exon
GGGTACTTGTGTGTTTGGGG+TGG 0.543437 3_1:+8077206 Msa0347160:three_prime_UTR
TAGGAGGATTGAGGCTTCCA+GGG 0.548350 3_1:+8075936 Msa0347160:CDS
GGAGTTGACGGCGGTTGCGG+CGG 0.549095 3_1:-8072786 None:intergenic
ACAAAAGTTAGAAATGAACT+TGG 0.549173 3_1:+8077064 Msa0347160:three_prime_UTR
GTAAGAGACATTAGGAGACT+TGG 0.549961 3_1:-8075977 None:intergenic
AACTCATTTCCTCATCCCAT+GGG 0.550217 3_1:+8072892 Msa0347160:CDS
GGCATCCTTTCCGAATCAGT+TGG 0.551118 3_1:+8072863 Msa0347160:CDS
ATATTGTGTCATGGCATGCT+TGG 0.563975 3_1:+8076937 Msa0347160:three_prime_UTR
GACCGAAAGCGACGCGTGCT+AGG 0.564563 3_1:-8072757 None:intergenic
ATTCCATTGGTTATTTGTCG+TGG 0.565301 3_1:+8077259 Msa0347160:three_prime_UTR
GCTGCGATCATCCGTGCTGA+GGG 0.565939 3_1:+8075847 Msa0347160:CDS
ATGAGCATGTTCTTTCCACC+AGG 0.569837 3_1:-8076003 None:intergenic
CTACTGCTGTTGCTGGTATG+GGG 0.570866 3_1:+8075902 Msa0347160:CDS
GGTGTAGAGAGAGGAGTTGA+CGG 0.577010 3_1:-8072798 None:intergenic
TTAATCCTTCACGTTGATGA+GGG 0.578078 3_1:+8076031 Msa0347160:exon
TCCTCTCTCTACACCGTCGA+CGG 0.584609 3_1:+8072806 Msa0347160:CDS
CATCTGAAGATCTTTGGTAC+CGG 0.587753 3_1:-8072972 None:intergenic
CTACCACGACAAATAACCAA+TGG 0.588784 3_1:-8077262 None:intergenic
TGGTGGAAAGAACATGCTCA+TGG 0.590341 3_1:+8076005 Msa0347160:CDS
CTGATCAGCTTCTTACGGAT+AGG 0.590505 3_1:+8074282 Msa0347160:CDS
TGTCGAAGAGGACGGCGCGT+TGG 0.593060 3_1:-8072832 None:intergenic
GCGGAATCTGTCGAAGAGGA+CGG 0.594434 3_1:-8072840 None:intergenic
GTGCGGATATCGAAGACGTA+AGG 0.598813 3_1:-8072923 None:intergenic
TAGTCTTGTGAGAAGGGCCA+AGG 0.601437 3_1:+8074331 Msa0347160:CDS
GCATGTTCTTTCCACCAGGA+AGG 0.602806 3_1:-8075999 None:intergenic
CGACGCGTGCTAGGTTTGAG+AGG 0.603487 3_1:-8072748 None:intergenic
CGGTCTTGAATATGACGAGA+AGG 0.603923 3_1:+8073063 Msa0347160:CDS
CTTCGCCAACTGATTCGGAA+AGG 0.604722 3_1:-8072868 None:intergenic
ATTACTCATTTGTCATATGG+TGG 0.611449 3_1:+8074383 Msa0347160:CDS
GGCTGTTGAGCAGAAGCAGG+TGG 0.617512 3_1:+8075765 Msa0347160:CDS
CTTTCCGAATCAGTTGGCGA+AGG 0.617636 3_1:+8072869 Msa0347160:CDS
GGATCAATGATATTGTGTCA+TGG 0.620363 3_1:+8076928 Msa0347160:three_prime_UTR
AGGAGACTTGGCCAAAGTAG+CGG 0.624726 3_1:-8075965 None:intergenic
CGGTACCAAAGATCTTCAGA+TGG 0.624779 3_1:+8072973 Msa0347160:CDS
GATCCTATCTCATCTGAGCA+AGG 0.625586 3_1:+8077022 Msa0347160:three_prime_UTR
CATCACTTTCTCCCTCAGCA+CGG 0.638713 3_1:-8075858 None:intergenic
ACCGTCGACGGTGTAGAGAG+AGG 0.647102 3_1:-8072807 None:intergenic
GTCCTCTTCGACAGATTCCG+CGG 0.650808 3_1:+8072842 Msa0347160:CDS
TCTCTCTACACCGTCGACGG+TGG 0.651078 3_1:+8072809 Msa0347160:CDS
CTGATTCGGAAAGGATGCCG+CGG 0.651487 3_1:-8072859 None:intergenic
TGCCGCGGAATCTGTCGAAG+AGG 0.655098 3_1:-8072844 None:intergenic
GATTACCCTCATCAACGTGA+AGG 0.656755 3_1:-8076036 None:intergenic
TGGCACAGCAAGAGGCAGAG+AGG 0.662475 3_1:+8075785 Msa0347160:CDS
AGAATGTGTGAGGGCGAGTG+CGG 0.667012 3_1:-8072940 None:intergenic
AATGTCTCTTACCTTCCTGG+TGG 0.667494 3_1:+8075988 Msa0347160:CDS
TAAGTTTGTTGTGATGAAGG+CGG 0.672014 3_1:+8075810 Msa0347160:CDS
AAATGGATGAGAATGTGTGA+GGG 0.679561 3_1:-8072949 None:intergenic
GAAATGGATGAGAATGTGTG+AGG 0.685119 3_1:-8072950 None:intergenic
CTAACAAGAGCCGAAACCTG+AGG 0.700849 3_1:-8074305 None:intergenic
TCTAACAAACGAGAGCCAAG+CGG 0.715012 3_1:-8076972 None:intergenic
GTAGAGAGAGGAGTTGACGG+CGG 0.788568 3_1:-8072795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATAATAAATAGTTA+AGG + chr3_1:8073630-8073649 Msa0347160:intron 10.0%
!! ATATGATTAATACTAAATAT+TGG - chr3_1:8076341-8076360 None:intergenic 10.0%
!!! TTTTTTTAATTAAGGCTAAA+GGG - chr3_1:8073349-8073368 None:intergenic 15.0%
!!! CAATTGTTTTGTAATTTATA+GGG + chr3_1:8074080-8074099 Msa0347160:intron 15.0%
!! AAAAAAACATATTTAAACCT+AGG + chr3_1:8074142-8074161 Msa0347160:intron 15.0%
!! TAAAGAAATTGAATTAGTTA+TGG + chr3_1:8074519-8074538 Msa0347160:intron 15.0%
!! TTGTAAAAAAAAATCACATT+TGG + chr3_1:8074667-8074686 Msa0347160:intron 15.0%
!! TCATTTGATTAAATTAGAAA+AGG + chr3_1:8074886-8074905 Msa0347160:intron 15.0%
!! CAAAAAAAATCTAAATACTA+TGG - chr3_1:8075109-8075128 None:intergenic 15.0%
!! ATTTAAAAATCATAAAGTGT+CGG - chr3_1:8075333-8075352 None:intergenic 15.0%
!! TCTTCTTGATATTAAAAAAA+TGG - chr3_1:8075361-8075380 None:intergenic 15.0%
!! AAATTAAAATATTGGTAAGT+TGG - chr3_1:8075524-8075543 None:intergenic 15.0%
!! AGTTCTTGAAATTAAAATAT+TGG - chr3_1:8075532-8075551 None:intergenic 15.0%
!! ATTAAAAAATTGTTGCGTTT+AGG + chr3_1:8073164-8073183 Msa0347160:intron 20.0%
!! TTAAAAAATTGTTGCGTTTA+GGG + chr3_1:8073165-8073184 Msa0347160:intron 20.0%
!!! GTTTTTTTAATTAAGGCTAA+AGG - chr3_1:8073350-8073369 None:intergenic 20.0%
!!! TAAATAGTTAAGGGTATAAT+AGG + chr3_1:8073640-8073659 Msa0347160:intron 20.0%
!! AAGTAACATTAATTCTTCAT+TGG + chr3_1:8073665-8073684 Msa0347160:intron 20.0%
!!! GCAATTGTTTTGTAATTTAT+AGG + chr3_1:8074079-8074098 Msa0347160:intron 20.0%
!!! ATTTGTTTGTTTAAGATTCA+GGG + chr3_1:8074542-8074561 Msa0347160:intron 20.0%
!! AATTTCAAGAACTAACTTAT+TGG + chr3_1:8075539-8075558 Msa0347160:intron 20.0%
!! ATCATGACAATTAATAACTA+GGG - chr3_1:8076394-8076413 None:intergenic 20.0%
!! AATCATGACAATTAATAACT+AGG - chr3_1:8076395-8076414 None:intergenic 20.0%
!! TAAAAATAGATACAAACTTC+GGG - chr3_1:8076458-8076477 None:intergenic 20.0%
!! GTAAAAATAGATACAAACTT+CGG - chr3_1:8076459-8076478 None:intergenic 20.0%
!! GAACTGAAAATATTTAACTA+TGG + chr3_1:8076870-8076889 Msa0347160:intron 20.0%
!! AATGAAGAAGGAAATTATTA+GGG - chr3_1:8076904-8076923 None:intergenic 20.0%
!! AAATGAAGAAGGAAATTATT+AGG - chr3_1:8076905-8076924 None:intergenic 20.0%
!! AGAAAAATTGAATATTCCAT+TGG + chr3_1:8077246-8077265 Msa0347160:three_prime_UTR 20.0%
! TGAAGTGAAATGAAAAGAAA+GGG - chr3_1:8072635-8072654 None:intergenic 25.0%
! ATGAAGTGAAATGAAAAGAA+AGG - chr3_1:8072636-8072655 None:intergenic 25.0%
! ACAGTGTTTACTAAATTTAG+CGG - chr3_1:8073424-8073443 None:intergenic 25.0%
! GTCAAAAGGACTTATAATTT+GGG - chr3_1:8073553-8073572 None:intergenic 25.0%
! AATTACTCTTTCCAATGAAA+TGG - chr3_1:8073575-8073594 None:intergenic 25.0%
! TTGTAAAGTGACTTATACTT+TGG + chr3_1:8073690-8073709 Msa0347160:intron 25.0%
! TGTAAAGTGACTTATACTTT+GGG + chr3_1:8073691-8073710 Msa0347160:intron 25.0%
!! TTTAGAGCGACTTATAATTT+GGG + chr3_1:8073726-8073745 Msa0347160:intron 25.0%
! TCAGATAAATTTGTAGTGTT+TGG + chr3_1:8073768-8073787 Msa0347160:intron 25.0%
!! ATTTTTCCAATTAAGATTGC+AGG + chr3_1:8073809-8073828 Msa0347160:intron 25.0%
!! TTTTTCCAATTAAGATTGCA+GGG + chr3_1:8073810-8073829 Msa0347160:intron 25.0%
! CATATAAGATTTATCATCCT+AGG - chr3_1:8074162-8074181 None:intergenic 25.0%
! TAAATTTGACAACTCTTAAC+AGG + chr3_1:8074221-8074240 Msa0347160:intron 25.0%
! AAGTAGAATATTGAAATCCT+TGG - chr3_1:8074351-8074370 None:intergenic 25.0%
!!! TTTCTTTCTCTTTTGTTTCT+TGG + chr3_1:8074423-8074442 Msa0347160:intron 25.0%
!! GATTTGTTTGTTTAAGATTC+AGG + chr3_1:8074541-8074560 Msa0347160:intron 25.0%
! TTCTATGATTCAAAACAAAC+AGG - chr3_1:8074568-8074587 None:intergenic 25.0%
! TTGAATCATAGAAGTGATTA+TGG + chr3_1:8074575-8074594 Msa0347160:intron 25.0%
! TTGAATGTAACTTAATGTGT+CGG + chr3_1:8074992-8075011 Msa0347160:intron 25.0%
!!! TGATTTGCTACTTAAATGTA+TGG - chr3_1:8075163-8075182 None:intergenic 25.0%
!! AGTTTAGAATATTGGTAAGT+TGG - chr3_1:8075687-8075706 None:intergenic 25.0%
!!! TTTTGAAGAAATCAAAACAC+AGG - chr3_1:8076106-8076125 None:intergenic 25.0%
! TAATACTAAATATTGGTCGT+GGG - chr3_1:8076334-8076353 None:intergenic 25.0%
! TTAATACTAAATATTGGTCG+TGG - chr3_1:8076335-8076354 None:intergenic 25.0%
! ACTCTAAGTTATTGTCTTAT+TGG + chr3_1:8076672-8076691 Msa0347160:intron 25.0%
! ATGAAGAAGGAAATTATTAG+GGG - chr3_1:8076903-8076922 None:intergenic 25.0%
! ATAATTTCCTTCTTCATTTC+AGG + chr3_1:8076906-8076925 Msa0347160:intron 25.0%
! TAATTTCCTTCTTCATTTCA+GGG + chr3_1:8076907-8076926 Msa0347160:intron 25.0%
!!! CATTTCTAACTTTTGTTTTC+AGG - chr3_1:8077060-8077079 None:intergenic 25.0%
! ACAAAAGTTAGAAATGAACT+TGG + chr3_1:8077064-8077083 Msa0347160:three_prime_UTR 25.0%
! GAAATGAAAAGAAAGGGTTT+TGG - chr3_1:8072629-8072648 None:intergenic 30.0%
!!! TTTTAGGGTTTTGAAGGAAA+TGG - chr3_1:8072671-8072690 None:intergenic 30.0%
! GTAATGATATTACCGATTGA+AGG - chr3_1:8073094-8073113 None:intergenic 30.0%
AGCTAACTAATAGCTTATAG+TGG + chr3_1:8073484-8073503 Msa0347160:intron 30.0%
GGTCAAAAGGACTTATAATT+TGG - chr3_1:8073554-8073573 None:intergenic 30.0%
TTTCCAATGAAATGGTCAAA+AGG - chr3_1:8073567-8073586 None:intergenic 30.0%
GTAAAGTGACTTATACTTTG+GGG + chr3_1:8073692-8073711 Msa0347160:intron 30.0%
!! CTTTAGAGCGACTTATAATT+TGG + chr3_1:8073725-8073744 Msa0347160:intron 30.0%
! TTTTCCAATTAAGATTGCAG+GGG + chr3_1:8073811-8073830 Msa0347160:intron 30.0%
TAAGCTTATAGCTTATAAGC+TGG - chr3_1:8073989-8074008 None:intergenic 30.0%
GTAATTTATAGGGACTGAAT+AGG + chr3_1:8074090-8074109 Msa0347160:intron 30.0%
! CAAGTAACTTGTCATTAATG+TGG + chr3_1:8074195-8074214 Msa0347160:intron 30.0%
GCTATTACTCATTTGTCATA+TGG + chr3_1:8074380-8074399 Msa0347160:CDS 30.0%
ATTACTCATTTGTCATATGG+TGG + chr3_1:8074383-8074402 Msa0347160:CDS 30.0%
GCTTCAAATACAATACAATC+TGG + chr3_1:8074753-8074772 Msa0347160:intron 30.0%
AACAAACACAAATCAGTTCT+AGG - chr3_1:8074822-8074841 None:intergenic 30.0%
TCTATATATCACCAACACTA+AGG - chr3_1:8075041-8075060 None:intergenic 30.0%
GGTGATATATAGACTATATG+AGG + chr3_1:8075048-8075067 Msa0347160:intron 30.0%
TATGGCACTATACAATTTCA+AGG - chr3_1:8075091-8075110 None:intergenic 30.0%
CATTTAAGTAGCAAATCAAG+AGG + chr3_1:8075165-8075184 Msa0347160:intron 30.0%
TTTGATTCATGAGTAATCCT+TGG + chr3_1:8075226-8075245 Msa0347160:intron 30.0%
TTGATTCATGAGTAATCCTT+GGG + chr3_1:8075227-8075246 Msa0347160:intron 30.0%
GAAGACAAGAACTAACTTAA+TGG + chr3_1:8075376-8075395 Msa0347160:intron 30.0%
TATAGTGAGTTAGCATAGTT+AGG - chr3_1:8075439-8075458 None:intergenic 30.0%
!! AATATTGGTAAGTTGGTTCT+AGG - chr3_1:8075517-8075536 None:intergenic 30.0%
CTCTTAATTTACTCGTTAAC+TGG + chr3_1:8075659-8075678 Msa0347160:intron 30.0%
! GTCAAGCTAGTTTAGAATAT+TGG - chr3_1:8075695-8075714 None:intergenic 30.0%
!!! TTTTGGTTCTTGCATTTTTG+TGG + chr3_1:8076065-8076084 Msa0347160:intron 30.0%
TATTGCATAGTGTAGTAGAT+TGG - chr3_1:8076282-8076301 None:intergenic 30.0%
TGTATGTGTATGCAAAAATG+TGG - chr3_1:8076432-8076451 None:intergenic 30.0%
GATTATGAAATATTGACGCA+TGG + chr3_1:8076569-8076588 Msa0347160:intron 30.0%
!! TCCATTGTATCAAGTTGTTT+TGG + chr3_1:8076608-8076627 Msa0347160:intron 30.0%
ACCAAAACAACTTGATACAA+TGG - chr3_1:8076612-8076631 None:intergenic 30.0%
TGAAGAAGGAAATTATTAGG+GGG - chr3_1:8076902-8076921 None:intergenic 30.0%
!! TTATCAACCATTTAGCTCTA+AGG + chr3_1:8077185-8077204 Msa0347160:three_prime_UTR 30.0%
!! TATCAACCATTTAGCTCTAA+GGG + chr3_1:8077186-8077205 Msa0347160:three_prime_UTR 30.0%
!!! AAAGGGTTTTAGGGTTTTGA+AGG - chr3_1:8072677-8072696 None:intergenic 35.0%
! AAGAGAGAGAAAGGGTTTTA+GGG - chr3_1:8072686-8072705 None:intergenic 35.0%
AAATGGATGAGAATGTGTGA+GGG - chr3_1:8072952-8072971 None:intergenic 35.0%
ATTCACCATCTGAAGATCTT+TGG - chr3_1:8072981-8073000 None:intergenic 35.0%
CCTACTATTGTTCAGAATCT+CGG + chr3_1:8073043-8073062 Msa0347160:CDS 35.0%
! GCTTATTTCTTACTAGCGTA+TGG + chr3_1:8073284-8073303 Msa0347160:intron 35.0%
CTTATCCACTCTTAGCAATA+AGG + chr3_1:8073460-8073479 Msa0347160:intron 35.0%
! ACTGCTAAACTAGCTTATTG+CGG + chr3_1:8073510-8073529 Msa0347160:intron 35.0%
! AGTCCTTTTGACCATTTCAT+TGG + chr3_1:8073561-8073580 Msa0347160:intron 35.0%
! GACTTATAATTTGGGACTGA+GGG + chr3_1:8073734-8073753 Msa0347160:intron 35.0%
TTTACCCCTGCAATCTTAAT+TGG - chr3_1:8073818-8073837 None:intergenic 35.0%
TATGACTATAAAAGACCCTG+TGG - chr3_1:8073966-8073985 None:intergenic 35.0%
ACAACTCTTAACAGGTAATG+AGG + chr3_1:8074229-8074248 Msa0347160:intron 35.0%
TAATGCTGATCAGCTTCTTA+CGG + chr3_1:8074277-8074296 Msa0347160:CDS 35.0%
CAAAATAAGCTGCAACAAAC+AGG - chr3_1:8074650-8074669 None:intergenic 35.0%
TATGAGGCAATCTCCAATTT+CGG + chr3_1:8075064-8075083 Msa0347160:intron 35.0%
ACAATTTCAAGGACCGAAAT+TGG - chr3_1:8075080-8075099 None:intergenic 35.0%
!!! TTAATGGTGCCTGTTGTTTT+AGG + chr3_1:8075392-8075411 Msa0347160:intron 35.0%
!!! TTATTGGTGCCTGTTGTTTT+AGG + chr3_1:8075555-8075574 Msa0347160:intron 35.0%
!!! TATTGGTGCCTGTTGTTTTA+GGG + chr3_1:8075556-8075575 Msa0347160:intron 35.0%
TCTGTTACAGTTAGCTAGTA+TGG - chr3_1:8075619-8075638 None:intergenic 35.0%
TACAGAGAATCAGAACAGAA+AGG - chr3_1:8075731-8075750 None:intergenic 35.0%
!! GTCTAAGTTTGTTGTGATGA+AGG + chr3_1:8075807-8075826 Msa0347160:CDS 35.0%
!! TAAGTTTGTTGTGATGAAGG+CGG + chr3_1:8075810-8075829 Msa0347160:CDS 35.0%
! TTAATCCTTCACGTTGATGA+GGG + chr3_1:8076031-8076050 Msa0347160:exon 35.0%
! TGAGGGTAATCACATTGTTT+TGG + chr3_1:8076048-8076067 Msa0347160:intron 35.0%
!! AATTGATTTGCCTGCATTAG+AGG + chr3_1:8076131-8076150 Msa0347160:intron 35.0%
!! CATTTGAACATCGCTTTTCA+AGG - chr3_1:8076235-8076254 None:intergenic 35.0%
CTAGGGTTAATGATTCTGTT+TGG - chr3_1:8076377-8076396 None:intergenic 35.0%
TGTGTATGCAAAAATGTGGA+TGG - chr3_1:8076428-8076447 None:intergenic 35.0%
CAACCAACCACTAATTATTC+CGG - chr3_1:8076751-8076770 None:intergenic 35.0%
CATCAGGATGCTATATGTTT+AGG + chr3_1:8076815-8076834 Msa0347160:intron 35.0%
GAAGAAGGAAATTATTAGGG+GGG - chr3_1:8076901-8076920 None:intergenic 35.0%
ATTGATCCCTGAAATGAAGA+AGG - chr3_1:8076916-8076935 None:intergenic 35.0%
GGATCAATGATATTGTGTCA+TGG + chr3_1:8076928-8076947 Msa0347160:three_prime_UTR 35.0%
! GGGTGGTTTCTACATTTTTA+TGG + chr3_1:8077223-8077242 Msa0347160:three_prime_UTR 35.0%
! ATTCCATTGGTTATTTGTCG+TGG + chr3_1:8077259-8077278 Msa0347160:three_prime_UTR 35.0%
! GAAGAGAGAGAAAGGGTTTT+AGG - chr3_1:8072687-8072706 None:intergenic 40.0%
AGAGAGAGAAGAGAGAGAAA+GGG - chr3_1:8072694-8072713 None:intergenic 40.0%
TTCTCTCTCTCTCTAACCAT+GGG + chr3_1:8072704-8072723 Msa0347160:exon 40.0%
AACTCATTTCCTCATCCCAT+GGG + chr3_1:8072892-8072911 Msa0347160:CDS 40.0%
GAAATGGATGAGAATGTGTG+AGG - chr3_1:8072953-8072972 None:intergenic 40.0%
CACACATTCTCATCCATTTC+CGG + chr3_1:8072953-8072972 Msa0347160:CDS 40.0%
! AAGATCTTTGGTACCGGAAA+TGG - chr3_1:8072969-8072988 None:intergenic 40.0%
CATCTGAAGATCTTTGGTAC+CGG - chr3_1:8072975-8072994 None:intergenic 40.0%
CCGAGATTCTGAACAATAGT+AGG - chr3_1:8073046-8073065 None:intergenic 40.0%
GAGAAGGTTCTTCCTTCAAT+CGG + chr3_1:8073079-8073098 Msa0347160:CDS 40.0%
AGCTACCTTATTGCTAAGAG+TGG - chr3_1:8073468-8073487 None:intergenic 40.0%
! CGACTTATAATTTGGGACTG+AGG + chr3_1:8073733-8073752 Msa0347160:intron 40.0%
ATAAAAGACCCTGTGGTGTT+TGG - chr3_1:8073959-8073978 None:intergenic 40.0%
!! TGTTAGCTTGTTGGGTTGTA+TGG - chr3_1:8074046-8074065 None:intergenic 40.0%
AACCCAACAAGCTAACATCA+GGG + chr3_1:8074049-8074068 Msa0347160:intron 40.0%
!! TTAGGGATAGTCTTGTGAGA+AGG + chr3_1:8074324-8074343 Msa0347160:CDS 40.0%
!! TAGGGATAGTCTTGTGAGAA+GGG + chr3_1:8074325-8074344 Msa0347160:CDS 40.0%
! CATATGGTGGTGAATTCTCT+AGG + chr3_1:8074396-8074415 Msa0347160:CDS 40.0%
ACTTGCGAACGTGTAACAAA+CGG + chr3_1:8074966-8074985 Msa0347160:intron 40.0%
ACTTGGTCACCTAAAACAAC+AGG - chr3_1:8075404-8075423 None:intergenic 40.0%
TTAGGAGTGAAAGCTCAACT+TGG - chr3_1:8075421-8075440 None:intergenic 40.0%
AACTTGGTCCCTAAAACAAC+AGG - chr3_1:8075567-8075586 None:intergenic 40.0%
TTACGAGCGAATGCTAAACT+TGG - chr3_1:8075583-8075602 None:intergenic 40.0%
TCTCTGTACGATCCAATATC+AGG + chr3_1:8075743-8075762 Msa0347160:intron 40.0%
CTCTGTACGATCCAATATCA+GGG + chr3_1:8075744-8075763 Msa0347160:intron 40.0%
GTAAGAGACATTAGGAGACT+TGG - chr3_1:8075980-8075999 None:intergenic 40.0%
CTTAATCCTTCACGTTGATG+AGG + chr3_1:8076030-8076049 Msa0347160:exon 40.0%
AGATACTCAACCTCTAATGC+AGG - chr3_1:8076144-8076163 None:intergenic 40.0%
CCAAGGCAAGCAAATCAAAT+TGG - chr3_1:8076186-8076205 None:intergenic 40.0%
!! CCAATTTGATTTGCTTGCCT+TGG + chr3_1:8076183-8076202 Msa0347160:intron 40.0%
! AGAAGTGCAGTACGTTGTTT+GGG - chr3_1:8076258-8076277 None:intergenic 40.0%
AACTGACAGATACTGTCAAC+TGG - chr3_1:8076486-8076505 None:intergenic 40.0%
AACCACTAATTATTCCGGAG+AGG - chr3_1:8076746-8076765 None:intergenic 40.0%
TCTCCGGAATAATTAGTGGT+TGG + chr3_1:8076745-8076764 Msa0347160:intron 40.0%
ATATTGTGTCATGGCATGCT+TGG + chr3_1:8076937-8076956 Msa0347160:three_prime_UTR 40.0%
AAACCTTGCTCAGATGAGAT+AGG - chr3_1:8077028-8077047 None:intergenic 40.0%
CAAGTACCCTTAGAGCTAAA+TGG - chr3_1:8077195-8077214 None:intergenic 40.0%
!! TCTAAGGGTACTTGTGTGTT+TGG + chr3_1:8077201-8077220 Msa0347160:three_prime_UTR 40.0%
!! CTAAGGGTACTTGTGTGTTT+GGG + chr3_1:8077202-8077221 Msa0347160:three_prime_UTR 40.0%
!! TAAGGGTACTTGTGTGTTTG+GGG + chr3_1:8077203-8077222 Msa0347160:three_prime_UTR 40.0%
CTACCACGACAAATAACCAA+TGG - chr3_1:8077265-8077284 None:intergenic 40.0%
TGGTTATTTGTCGTGGTAGT+TGG + chr3_1:8077266-8077285 Msa0347160:three_prime_UTR 40.0%
ATTTGTCGTGGTAGTTGGAT+TGG + chr3_1:8077271-8077290 Msa0347160:three_prime_UTR 40.0%
! GTTGGATTGGAGAGTTAAAG+AGG + chr3_1:8077284-8077303 Msa0347160:three_prime_UTR 40.0%
GAGAGAGAGAAGAGAGAGAA+AGG - chr3_1:8072695-8072714 None:intergenic 45.0%
CTTCTCTCTCTCTCTAACCA+TGG + chr3_1:8072703-8072722 Msa0347160:exon 45.0%
AGTTCCTTCGCCAACTGATT+CGG - chr3_1:8072876-8072895 None:intergenic 45.0%
GAACTCATTTCCTCATCCCA+TGG + chr3_1:8072891-8072910 Msa0347160:CDS 45.0%
! CGTAAGGCTTTTGAACCCAT+GGG - chr3_1:8072910-8072929 None:intergenic 45.0%
! ACGTAAGGCTTTTGAACCCA+TGG - chr3_1:8072911-8072930 None:intergenic 45.0%
CGGTACCAAAGATCTTCAGA+TGG + chr3_1:8072973-8072992 Msa0347160:CDS 45.0%
GTAGGAAGACGTTGAGTATC+AGG - chr3_1:8073028-8073047 None:intergenic 45.0%
CGGTCTTGAATATGACGAGA+AGG + chr3_1:8073063-8073082 Msa0347160:CDS 45.0%
! TGTTGCGTTTAGGGTCTGTT+TGG + chr3_1:8073174-8073193 Msa0347160:intron 45.0%
TGACAGTTACCAAACACCAC+AGG + chr3_1:8073947-8073966 Msa0347160:intron 45.0%
GACAGTTACCAAACACCACA+GGG + chr3_1:8073948-8073967 Msa0347160:intron 45.0%
! GGCGTGATTTTGGATCTGTT+TGG - chr3_1:8074025-8074044 None:intergenic 45.0%
! TGGGTTGTATGGCGTGATTT+TGG - chr3_1:8074035-8074054 None:intergenic 45.0%
CAACCCAACAAGCTAACATC+AGG + chr3_1:8074048-8074067 Msa0347160:intron 45.0%
ACCCAACAAGCTAACATCAG+GGG + chr3_1:8074050-8074069 Msa0347160:intron 45.0%
CTGATCAGCTTCTTACGGAT+AGG + chr3_1:8074282-8074301 Msa0347160:CDS 45.0%
TCAGGTTTCGGCTCTTGTTA+GGG + chr3_1:8074307-8074326 Msa0347160:CDS 45.0%
CTTGCGAACGTGTAACAAAC+GGG + chr3_1:8074967-8074986 Msa0347160:intron 45.0%
!! TTAATGTGTCGGTGTCGTGT+TGG + chr3_1:8075003-8075022 Msa0347160:intron 45.0%
CTGACATCAAATCAGTCCCA+AGG - chr3_1:8075246-8075265 None:intergenic 45.0%
!! CTTGGGACTGATTTGATGTC+AGG + chr3_1:8075244-8075263 Msa0347160:intron 45.0%
CTAGCTTGACATTCCTGAAG+TGG + chr3_1:8075705-8075724 Msa0347160:intron 45.0%
! GTATGGGGTTGATTGAGCTT+AGG + chr3_1:8075917-8075936 Msa0347160:CDS 45.0%
GATTGAGCTTAGGAGGATTG+AGG + chr3_1:8075927-8075946 Msa0347160:CDS 45.0%
CCAGGAAGGTAAGAGACATT+AGG - chr3_1:8075988-8076007 None:intergenic 45.0%
CCTAATGTCTCTTACCTTCC+TGG + chr3_1:8075985-8076004 Msa0347160:CDS 45.0%
AATGTCTCTTACCTTCCTGG+TGG + chr3_1:8075988-8076007 Msa0347160:CDS 45.0%
ATGAGCATGTTCTTTCCACC+AGG - chr3_1:8076006-8076025 None:intergenic 45.0%
TGGTGGAAAGAACATGCTCA+TGG + chr3_1:8076005-8076024 Msa0347160:CDS 45.0%
GATTACCCTCATCAACGTGA+AGG - chr3_1:8076039-8076058 None:intergenic 45.0%
ACTAACTGATGCGACTTCCA+AGG - chr3_1:8076203-8076222 None:intergenic 45.0%
! CAGAAGTGCAGTACGTTGTT+TGG - chr3_1:8076259-8076278 None:intergenic 45.0%
TATTCCGGAGAGGCAGAAAA+GGG - chr3_1:8076736-8076755 None:intergenic 45.0%
TTATTCCGGAGAGGCAGAAA+AGG - chr3_1:8076737-8076756 None:intergenic 45.0%
TGCCTCTCCGGAATAATTAG+TGG + chr3_1:8076741-8076760 Msa0347160:intron 45.0%
TGTTCCTCTAGCGTATCATC+AGG + chr3_1:8076799-8076818 Msa0347160:intron 45.0%
TCTAACAAACGAGAGCCAAG+CGG - chr3_1:8076975-8076994 None:intergenic 45.0%
GATCCTATCTCATCTGAGCA+AGG + chr3_1:8077022-8077041 Msa0347160:three_prime_UTR 45.0%
!!! AATTATTGTTTTTTTAATTA+AGG - chr3_1:8073357-8073376 None:intergenic 5.0%
!! AAAAAATAATAAATAGTTAA+GGG + chr3_1:8073631-8073650 Msa0347160:intron 5.0%
! TGCTGCTTGATTGCTTCCCA+TGG - chr3_1:8072723-8072742 None:intergenic 50.0%
GGTGTAGAGAGAGGAGTTGA+CGG - chr3_1:8072801-8072820 None:intergenic 50.0%
GGCATCCTTTCCGAATCAGT+TGG + chr3_1:8072863-8072882 Msa0347160:CDS 50.0%
!! CTTCGCCAACTGATTCGGAA+AGG - chr3_1:8072871-8072890 None:intergenic 50.0%
CTTTCCGAATCAGTTGGCGA+AGG + chr3_1:8072869-8072888 Msa0347160:CDS 50.0%
! GCTTTTGAACCCATGGGATG+AGG - chr3_1:8072904-8072923 None:intergenic 50.0%
GTGCGGATATCGAAGACGTA+AGG - chr3_1:8072926-8072945 None:intergenic 50.0%
!! GCCCCTGATGTTAGCTTGTT+GGG - chr3_1:8074054-8074073 None:intergenic 50.0%
!! AGCCCCTGATGTTAGCTTGT+TGG - chr3_1:8074055-8074074 None:intergenic 50.0%
TACGGATAGGCCTCAGGTTT+CGG + chr3_1:8074295-8074314 Msa0347160:CDS 50.0%
CTAACAAGAGCCGAAACCTG+AGG - chr3_1:8074308-8074327 None:intergenic 50.0%
CTCAGGTTTCGGCTCTTGTT+AGG + chr3_1:8074306-8074325 Msa0347160:CDS 50.0%
!! TAGTCTTGTGAGAAGGGCCA+AGG + chr3_1:8074331-8074350 Msa0347160:CDS 50.0%
CACTCGACACACCTTAGTGT+TGG + chr3_1:8075027-8075046 Msa0347160:intron 50.0%
CAGAACAGAAAGGCCACTTC+AGG - chr3_1:8075721-8075740 None:intergenic 50.0%
CTGCTCAACAGCCCTGATAT+TGG - chr3_1:8075758-8075777 None:intergenic 50.0%
TGTTGTGATGAAGGCGGAAC+AGG + chr3_1:8075816-8075835 Msa0347160:CDS 50.0%
CATCACTTTCTCCCTCAGCA+CGG - chr3_1:8075861-8075880 None:intergenic 50.0%
TCTGATGCTACTGCTGTTGC+TGG + chr3_1:8075895-8075914 Msa0347160:CDS 50.0%
TGCTACTGCTGTTGCTGGTA+TGG + chr3_1:8075900-8075919 Msa0347160:CDS 50.0%
GCTACTGCTGTTGCTGGTAT+GGG + chr3_1:8075901-8075920 Msa0347160:CDS 50.0%
CTACTGCTGTTGCTGGTATG+GGG + chr3_1:8075902-8075921 Msa0347160:CDS 50.0%
! TGGGGTTGATTGAGCTTAGG+AGG + chr3_1:8075920-8075939 Msa0347160:CDS 50.0%
TTAGGAGGATTGAGGCTTCC+AGG + chr3_1:8075935-8075954 Msa0347160:CDS 50.0%
TAGGAGGATTGAGGCTTCCA+GGG + chr3_1:8075936-8075955 Msa0347160:CDS 50.0%
CAAAGTAGCGGCAATTTCCC+TGG - chr3_1:8075956-8075975 None:intergenic 50.0%
CAGGGAAATTGCCGCTACTT+TGG + chr3_1:8075954-8075973 Msa0347160:CDS 50.0%
AGGAGACTTGGCCAAAGTAG+CGG - chr3_1:8075968-8075987 None:intergenic 50.0%
GCATGTTCTTTCCACCAGGA+AGG - chr3_1:8076002-8076021 None:intergenic 50.0%
GCATCCTGATGATACGCTAG+AGG - chr3_1:8076806-8076825 None:intergenic 50.0%
GTGTCATGGCATGCTTGGAT+TGG + chr3_1:8076942-8076961 Msa0347160:three_prime_UTR 50.0%
! TGGATTGGATCATTGCCGCT+TGG + chr3_1:8076957-8076976 Msa0347160:three_prime_UTR 50.0%
! AACCTAGCACGCGTCGCTTT+CGG + chr3_1:8072755-8072774 Msa0347160:CDS 55.0%
GTAGAGAGAGGAGTTGACGG+CGG - chr3_1:8072798-8072817 None:intergenic 55.0%
TCCTCTCTCTACACCGTCGA+CGG + chr3_1:8072806-8072825 Msa0347160:CDS 55.0%
GCGGAATCTGTCGAAGAGGA+CGG - chr3_1:8072843-8072862 None:intergenic 55.0%
GTCCTCTTCGACAGATTCCG+CGG + chr3_1:8072842-8072861 Msa0347160:CDS 55.0%
!! CTGATTCGGAAAGGATGCCG+CGG - chr3_1:8072862-8072881 None:intergenic 55.0%
AGAATGTGTGAGGGCGAGTG+CGG - chr3_1:8072943-8072962 None:intergenic 55.0%
GCTTCTTACGGATAGGCCTC+AGG + chr3_1:8074289-8074308 Msa0347160:CDS 55.0%
GAGGCAGAAAAGGGTAGGAC+TGG - chr3_1:8076727-8076746 None:intergenic 55.0%
! CCTACCCTTTTCTGCCTCTC+CGG + chr3_1:8076729-8076748 Msa0347160:intron 55.0%
GGGTACTTGTGTGTTTGGGG+TGG + chr3_1:8077206-8077225 Msa0347160:three_prime_UTR 55.0%
CGACGCGTGCTAGGTTTGAG+AGG - chr3_1:8072751-8072770 None:intergenic 60.0%
AGAGGAGTTGACGGCGGTTG+CGG - chr3_1:8072792-8072811 None:intergenic 60.0%
ACCGTCGACGGTGTAGAGAG+AGG - chr3_1:8072810-8072829 None:intergenic 60.0%
TCTCTCTACACCGTCGACGG+TGG + chr3_1:8072809-8072828 Msa0347160:CDS 60.0%
TGCCGCGGAATCTGTCGAAG+AGG - chr3_1:8072847-8072866 None:intergenic 60.0%
GAGTCGCGAACACTGACACG+TGG + chr3_1:8074482-8074501 Msa0347160:intron 60.0%
CAGGGCTGTTGAGCAGAAGC+AGG + chr3_1:8075762-8075781 Msa0347160:intron 60.0%
GGCTGTTGAGCAGAAGCAGG+TGG + chr3_1:8075765-8075784 Msa0347160:CDS 60.0%
GAAGCAGGTGGCACAGCAAG+AGG + chr3_1:8075777-8075796 Msa0347160:CDS 60.0%
TGGCACAGCAAGAGGCAGAG+AGG + chr3_1:8075785-8075804 Msa0347160:CDS 60.0%
TGCTGCGATCATCCGTGCTG+AGG + chr3_1:8075846-8075865 Msa0347160:CDS 60.0%
GCTGCGATCATCCGTGCTGA+GGG + chr3_1:8075847-8075866 Msa0347160:CDS 60.0%
TGGTCGTGGGCATGCAGATC+TGG - chr3_1:8076321-8076340 None:intergenic 60.0%
CCGGAGAGGCAGAAAAGGGT+AGG - chr3_1:8076732-8076751 None:intergenic 60.0%
GACCGAAAGCGACGCGTGCT+AGG - chr3_1:8072760-8072779 None:intergenic 65.0%
! GCACGCGTCGCTTTCGGTCT+CGG + chr3_1:8072761-8072780 Msa0347160:CDS 65.0%
TGTCGAAGAGGACGGCGCGT+TGG - chr3_1:8072835-8072854 None:intergenic 65.0%
GGAGTTGACGGCGGTTGCGG+CGG - chr3_1:8072789-8072808 None:intergenic 70.0%
! GGCGCGTTGGCCACCGTCGA+CGG - chr3_1:8072822-8072841 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 8072557 8077339 8072557 ID=Msa0347160;Name=Msa0347160
chr3_1 mRNA 8072557 8077339 8072557 ID=Msa0347160-mRNA-1;Parent=Msa0347160;Name=Msa0347160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=132|1|1|1|0.5|0.2|5|417|278
chr3_1 exon 8072557 8072567 8072557 ID=Msa0347160-mRNA-1:exon:2279;Parent=Msa0347160-mRNA-1
chr3_1 exon 8072601 8073100 8072601 ID=Msa0347160-mRNA-1:exon:2280;Parent=Msa0347160-mRNA-1
chr3_1 exon 8074243 8074417 8074243 ID=Msa0347160-mRNA-1:exon:2281;Parent=Msa0347160-mRNA-1
chr3_1 exon 8075765 8076052 8075765 ID=Msa0347160-mRNA-1:exon:2282;Parent=Msa0347160-mRNA-1
chr3_1 exon 8076928 8077339 8076928 ID=Msa0347160-mRNA-1:exon:2283;Parent=Msa0347160-mRNA-1
chr3_1 five_prime_UTR 8072557 8072567 8072557 ID=Msa0347160-mRNA-1:five_prime_utr;Parent=Msa0347160-mRNA-1
chr3_1 five_prime_UTR 8072601 8072721 8072601 ID=Msa0347160-mRNA-1:five_prime_utr;Parent=Msa0347160-mRNA-1
chr3_1 CDS 8072722 8073100 8072722 ID=Msa0347160-mRNA-1:cds;Parent=Msa0347160-mRNA-1
chr3_1 CDS 8074243 8074417 8074243 ID=Msa0347160-mRNA-1:cds;Parent=Msa0347160-mRNA-1
chr3_1 CDS 8075765 8076047 8075765 ID=Msa0347160-mRNA-1:cds;Parent=Msa0347160-mRNA-1
chr3_1 three_prime_UTR 8076048 8076052 8076048 ID=Msa0347160-mRNA-1:three_prime_utr;Parent=Msa0347160-mRNA-1
chr3_1 three_prime_UTR 8076928 8077339 8076928 ID=Msa0347160-mRNA-1:three_prime_utr;Parent=Msa0347160-mRNA-1
Gene Sequence

>Msa0347160

ATGGGAAGCAATCAAGCAGCAAACATCCTCTCAAACCTAGCACGCGTCGCTTTCGGTCTCGGCGCCGCCGCAACCGCCGTCAACTCCTCTCTCTACACCGTCGACGGTGGCCAACGCGCCGTCCTCTTCGACAGATTCCGCGGCATCCTTTCCGAATCAGTTGGCGAAGGAACTCATTTCCTCATCCCATGGGTTCAAAAGCCTTACGTCTTCGATATCCGCACTCGCCCTCACACATTCTCATCCATTTCCGGTACCAAAGATCTTCAGATGGTGAATCTCACTCTTCGTGTTCTCTCTCGTCCTGATACTCAACGTCTTCCTACTATTGTTCAGAATCTCGGTCTTGAATATGACGAGAAGGTTCTTCCTTCAATCGGTAATGAGGTTTTGAAAGCTGTTGTTGCTCAGTTTAATGCTGATCAGCTTCTTACGGATAGGCCTCAGGTTTCGGCTCTTGTTAGGGATAGTCTTGTGAGAAGGGCCAAGGATTTCAATATTCTACTTGATGATGTTGCTATTACTCATTTGTCATATGGTGGTGAATTCTCTAGGGCTGTTGAGCAGAAGCAGGTGGCACAGCAAGAGGCAGAGAGGTCTAAGTTTGTTGTGATGAAGGCGGAACAGGAGCGTCGTGCTGCGATCATCCGTGCTGAGGGAGAAAGTGATGCTGCAAAGCTGATTTCTGATGCTACTGCTGTTGCTGGTATGGGGTTGATTGAGCTTAGGAGGATTGAGGCTTCCAGGGAAATTGCCGCTACTTTGGCCAAGTCTCCTAATGTCTCTTACCTTCCTGGTGGAAAGAACATGCTCATGGCTCTTAATCCTTCACGTTGA
Protein sequence

>Msa0347160

MGSNQAANILSNLARVAFGLGAAATAVNSSLYTVDGGQRAVLFDRFRGILSESVGEGTHFLIPWVQKPYVFDIRTRPHTFSSISGTKDLQMVNLTLRVLSRPDTQRLPTIVQNLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTDRPQVSALVRDSLVRRAKDFNILLDDVAITHLSYGGEFSRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESDAAKLISDATAVAGMGLIELRRIEASREIAATLAKSPNVSYLPGGKNMLMALNPSR*