AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1138880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138880 MtrunA17_Chr7g0219021 84.791 263 30 2 1 263 1 253 2.42e-125 356
Msa1138880 MtrunA17_Chr7g0219031 79.245 106 22 0 1 106 1 106 2.53e-59 184
Msa1138880 MtrunA17_Chr4g0061451 70.161 124 33 2 1 121 1 123 2.90e-53 173
Msa1138880 MtrunA17_Chr3g0086861 61.719 128 45 2 1 124 1 128 5.77e-51 172
Msa1138880 MtrunA17_Chr3g0121631 52.941 119 51 2 1 119 1 114 4.14e-36 125
Msa1138880 MtrunA17_Chr4g0035001 53.947 76 35 0 41 116 7 82 1.55e-24 96.3
Msa1138880 MtrunA17_Chr3g0119311 43.750 96 48 1 41 130 37 132 8.74e-24 93.6
Msa1138880 MtrunA17_Chr4g0035051 50.000 84 38 1 37 116 1 84 1.19e-22 89.7
Msa1138880 MtrunA17_Chr4g0035031 48.684 76 39 0 41 116 9 84 5.79e-22 90.1
Msa1138880 MtrunA17_Chr7g0266751 44.444 90 49 1 27 116 20 108 1.02e-20 85.5
Msa1138880 MtrunA17_Chr7g0263001 40.164 122 62 2 1 119 1 114 4.63e-20 84.0
Msa1138880 MtrunA17_Chr4g0058151 43.878 98 55 0 27 124 203 300 7.56e-20 86.7
Msa1138880 MtrunA17_Chr4g0058151 37.634 93 58 0 41 133 123 215 1.76e-13 68.9
Msa1138880 MtrunA17_Chr2g0278661 46.053 76 41 0 41 116 8 83 8.28e-20 85.9
Msa1138880 MtrunA17_Chr4g0031091 38.462 91 56 0 26 116 19 109 9.32e-20 82.0
Msa1138880 MtrunA17_Chr3g0116631 38.542 96 54 1 28 123 199 289 1.26e-19 85.9
Msa1138880 MtrunA17_Chr3g0116631 40.476 84 49 1 40 122 109 192 7.72e-11 61.2
Msa1138880 MtrunA17_Chr3g0101061 41.071 112 53 3 19 119 8 117 1.34e-18 85.1
Msa1138880 MtrunA17_Chr1g0168601 47.368 76 40 0 41 116 154 229 5.64e-18 80.5
Msa1138880 MtrunA17_Chr4g0042161 41.758 91 51 1 35 123 44 134 8.71e-18 77.8
Msa1138880 MtrunA17_Chr1g0181111 41.667 84 49 0 41 124 197 280 1.21e-17 80.5
Msa1138880 MtrunA17_Chr4g0050781 40.789 76 45 0 41 116 8 83 1.69e-17 78.6
Msa1138880 MtrunA17_Chr1g0210241 41.772 79 46 0 41 119 8 86 1.80e-17 79.7
Msa1138880 MtrunA17_Chr3g0088511 41.667 96 51 3 23 114 12 106 1.06e-16 74.7
Msa1138880 MtrunA17_Chr5g0447761 48.148 81 40 1 39 119 5 83 2.88e-16 78.2
Msa1138880 MtrunA17_Chr5g0447761 34.568 81 52 1 39 119 105 184 5.86e-11 62.4
Msa1138880 MtrunA17_Chr2g0290191 43.373 83 45 1 37 119 1 81 4.81e-16 77.4
Msa1138880 MtrunA17_Chr2g0290191 32.692 104 69 1 33 136 99 201 6.20e-11 62.0
Msa1138880 MtrunA17_Chr5g0419351 35.294 102 62 2 42 142 12 110 3.82e-15 71.2
Msa1138880 MtrunA17_Chr6g0481071 37.500 80 50 0 41 120 96 175 5.27e-15 71.2
Msa1138880 MtrunA17_Chr6g0449481 31.944 144 91 4 7 148 99 237 7.19e-15 73.6
Msa1138880 MtrunA17_Chr5g0406171 31.515 165 104 4 42 199 133 295 8.11e-15 72.8
Msa1138880 MtrunA17_Chr1g0198431 38.272 81 50 0 36 116 188 268 9.15e-15 72.4
Msa1138880 MtrunA17_Chr3g0127751 26.950 141 101 2 18 157 3 142 2.34e-14 70.9
Msa1138880 MtrunA17_Chr3g0135111 44.444 81 43 1 40 120 10 88 2.64e-14 72.0
Msa1138880 MtrunA17_Chr7g0267571 43.023 86 49 0 38 123 210 295 2.74e-14 71.6
Msa1138880 MtrunA17_Chr7g0267571 31.092 119 76 1 41 159 110 222 5.79e-12 64.7
Msa1138880 MtrunA17_Chr1g0186351 40.506 79 45 1 41 119 7 83 3.17e-14 72.0
Msa1138880 MtrunA17_Chr1g0186351 38.636 88 52 2 37 123 109 195 5.57e-13 68.2
Msa1138880 MtrunA17_Chr4g0070231 40.260 77 46 0 42 118 133 209 3.87e-14 71.6
Msa1138880 MtrunA17_Chr7g0276531 40.741 81 47 1 41 121 19 98 4.60e-14 70.1
Msa1138880 MtrunA17_Chr8g0344491 38.961 77 47 0 42 118 149 225 6.21e-14 70.9
Msa1138880 MtrunA17_Chr4g0042151 41.026 78 46 0 42 119 46 123 6.72e-14 68.2
Msa1138880 MtrunA17_Chr8g0360551 32.759 116 63 3 6 116 43 148 2.05e-13 69.7
Msa1138880 MtrunA17_Chr4g0065741 38.372 86 49 1 38 123 69 150 2.50e-13 66.2
Msa1138880 MtrunA17_Chr3g0144311 35.417 96 56 3 31 121 16 110 3.22e-13 68.2
Msa1138880 MtrunA17_Chr8g0346011 45.000 60 33 0 40 99 37 96 4.05e-13 67.8
Msa1138880 MtrunA17_Chr4g0017401 32.500 120 71 4 41 153 17 133 4.23e-13 67.4
Msa1138880 MtrunA17_Chr3g0139111 37.662 77 48 0 42 118 147 223 6.02e-13 68.2
Msa1138880 MtrunA17_Chr7g0276201 35.366 82 53 0 40 121 104 185 8.20e-13 67.8
Msa1138880 MtrunA17_Chr1g0177101 34.884 86 56 0 38 123 205 290 1.04e-12 67.0
Msa1138880 MtrunA17_Chr4g0068631 40.698 86 47 3 40 121 88 173 1.80e-12 67.0
Msa1138880 MtrunA17_Chr5g0426311 38.961 77 46 1 41 117 17 92 2.75e-12 65.5
Msa1138880 MtrunA17_Chr3g0110211 40.741 81 47 1 40 119 112 192 2.98e-12 65.9
Msa1138880 MtrunA17_Chr4g0038111 36.937 111 63 3 42 152 341 444 3.11e-12 66.2
Msa1138880 MtrunA17_Chr8g0375101 37.349 83 50 1 37 119 1 81 7.94e-12 64.7
Msa1138880 MtrunA17_Chr5g0430471 32.000 75 51 0 39 113 38 112 1.07e-11 61.2
Msa1138880 MtrunA17_Chr5g0402191 37.349 83 50 1 37 119 1 81 1.31e-11 63.9
Msa1138880 MtrunA17_Chr4g0018581 36.585 82 52 0 35 116 446 527 1.32e-11 64.3
Msa1138880 MtrunA17_Chr7g0259641 32.174 115 74 2 7 119 240 352 1.82e-11 63.9
Msa1138880 MtrunA17_Chr4g0045921 31.356 118 72 3 7 116 35 151 3.05e-11 62.8
Msa1138880 MtrunA17_Chr3g0120721 36.585 82 50 1 38 119 16 95 3.95e-11 62.4
Msa1138880 MtrunA17_Chr7g0259671 37.838 74 46 0 40 113 279 352 7.84e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138880 AT5G61030.2 63.025 119 44 0 1 119 1 119 1.10e-52 174
Msa1138880 AT5G61030.1 63.025 119 44 0 1 119 1 119 1.10e-52 174
Msa1138880 AT1G74230.1 59.322 118 41 3 1 118 1 111 1.71e-43 149
Msa1138880 AT4G13850.4 49.580 119 55 2 1 119 1 114 6.82e-32 114
Msa1138880 AT3G23830.2 48.333 120 57 2 1 120 1 115 7.51e-32 114
Msa1138880 AT3G23830.1 48.333 120 57 2 1 120 1 115 7.51e-32 114
Msa1138880 AT4G13850.3 49.580 119 55 2 1 119 1 114 7.71e-32 115
Msa1138880 AT4G13850.2 49.580 119 55 2 1 119 1 114 9.96e-32 115
Msa1138880 AT5G06210.1 46.087 115 59 2 17 130 10 122 1.81e-27 103
Msa1138880 AT4G13850.1 50.000 144 64 3 1 144 1 136 4.13e-27 103
Msa1138880 AT2G21660.2 51.316 76 37 0 41 116 9 84 2.68e-22 90.5
Msa1138880 AT4G39260.3 45.556 90 45 1 41 130 7 92 2.91e-22 88.6
Msa1138880 AT2G21660.1 51.316 76 37 0 41 116 9 84 4.07e-22 90.5
Msa1138880 AT1G18630.1 49.383 81 41 0 36 116 32 112 7.07e-22 89.4
Msa1138880 AT3G08000.1 53.086 81 38 0 41 121 42 122 6.73e-21 86.3
Msa1138880 AT5G59865.1 45.833 96 51 1 24 119 11 105 1.51e-20 84.7
Msa1138880 AT4G39260.1 47.368 76 40 0 41 116 7 82 5.80e-20 84.7
Msa1138880 AT3G26420.1 44.318 88 45 1 41 128 8 91 2.08e-19 85.1
Msa1138880 AT4G24770.1 44.304 79 44 0 41 119 245 323 8.55e-19 84.7
Msa1138880 AT4G24770.1 40.476 84 49 1 40 122 150 233 7.66e-13 67.8
Msa1138880 AT4G24770.2 44.304 79 44 0 41 119 245 323 8.55e-19 84.7
Msa1138880 AT4G24770.2 40.476 84 49 1 40 122 150 233 7.66e-13 67.8
Msa1138880 AT5G47320.1 39.831 118 62 2 1 118 1 109 1.76e-18 81.6
Msa1138880 AT2G27330.1 43.182 88 47 2 27 114 11 95 2.10e-18 79.0
Msa1138880 AT5G04280.1 40.777 103 57 1 40 142 7 105 2.31e-18 83.2
Msa1138880 AT5G50250.1 43.210 81 46 0 41 121 208 288 3.16e-18 82.4
Msa1138880 AT5G50250.1 41.667 84 48 1 40 122 113 196 2.94e-13 68.6
Msa1138880 AT4G13860.1 48.684 76 39 0 39 114 2 77 6.57e-18 76.6
Msa1138880 AT5G55550.5 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1138880 AT5G55550.4 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1138880 AT5G55550.9 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1138880 AT5G55550.7 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1138880 AT5G55550.1 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1138880 AT5G55550.2 50.633 79 37 1 41 119 7 83 9.04e-18 82.8
Msa1138880 AT5G55550.3 50.633 79 37 1 41 119 7 83 9.04e-18 82.8
Msa1138880 AT5G55550.6 50.633 79 37 1 41 119 7 83 9.04e-18 82.8
Msa1138880 AT5G55550.11 50.633 79 37 1 41 119 7 83 9.04e-18 82.8
Msa1138880 AT4G26650.1 46.067 89 45 2 32 119 6 92 3.44e-17 80.9
Msa1138880 AT4G26650.2 46.067 89 45 2 32 119 3 89 3.45e-17 80.9
Msa1138880 AT5G55550.10 53.521 71 31 1 41 111 7 75 1.27e-16 79.7
Msa1138880 AT5G55550.8 53.521 71 31 1 41 111 7 75 1.35e-16 79.3
Msa1138880 AT2G37220.1 41.463 82 46 1 41 122 205 284 1.62e-16 77.8
Msa1138880 AT2G37220.1 41.892 74 43 0 41 114 92 165 5.84e-12 64.7
Msa1138880 AT3G07810.1 44.304 79 42 1 41 119 7 83 1.88e-16 79.0
Msa1138880 AT3G07810.2 44.304 79 42 1 41 119 7 83 1.99e-16 79.0
Msa1138880 AT3G46020.1 39.175 97 57 1 39 133 6 102 2.75e-16 72.8
Msa1138880 AT2G37510.1 40.506 79 47 0 36 114 30 108 5.58e-16 73.2
Msa1138880 AT1G22330.1 40.777 103 57 3 40 139 17 118 1.85e-15 74.7
Msa1138880 AT3G53460.1 40.244 82 47 1 41 122 258 337 1.92e-15 75.5
Msa1138880 AT3G53460.3 40.244 82 47 1 41 122 258 337 1.92e-15 75.5
Msa1138880 AT3G53460.2 40.244 82 47 1 41 122 258 337 1.92e-15 75.5
Msa1138880 AT5G47620.1 43.373 83 45 1 37 119 3 83 2.32e-15 75.5
Msa1138880 AT5G47620.2 43.373 83 45 1 37 119 3 83 2.32e-15 75.5
Msa1138880 AT5G47620.5 43.373 83 45 1 37 119 3 83 2.32e-15 75.5
Msa1138880 AT3G53460.4 40.244 82 47 1 41 122 279 358 2.60e-15 75.1
Msa1138880 AT2G33410.1 44.304 79 42 1 41 119 7 83 2.98e-15 75.1
Msa1138880 AT2G46780.1 35.849 106 62 3 41 143 23 125 4.24e-15 74.3
Msa1138880 AT2G46780.2 35.849 106 62 3 41 143 23 125 4.24e-15 74.3
Msa1138880 AT1G76460.1 41.176 85 48 2 41 124 25 108 5.02e-15 73.6
Msa1138880 AT4G39260.2 47.706 109 51 1 41 149 7 109 5.47e-15 70.1
Msa1138880 AT3G20930.1 35.714 112 58 2 20 125 270 373 7.96e-15 73.9
Msa1138880 AT4G14300.1 36.607 112 69 1 41 152 7 116 9.07e-15 73.9
Msa1138880 AT4G14300.2 36.607 112 69 1 41 152 7 116 9.07e-15 73.9
Msa1138880 AT1G60000.1 43.421 76 43 0 41 116 178 253 1.22e-14 72.0
Msa1138880 AT3G14100.1 37.662 77 48 0 42 118 146 222 1.32e-14 73.6
Msa1138880 AT2G21690.1 40.741 81 47 1 43 122 10 90 2.01e-14 68.6
Msa1138880 AT4G13860.2 55.932 59 26 0 56 114 2 60 2.27e-14 67.0
Msa1138880 AT3G52380.1 43.529 85 48 0 38 122 217 301 3.54e-14 71.6
Msa1138880 AT3G52380.1 41.333 75 44 0 41 115 117 191 4.25e-14 71.2
Msa1138880 AT5G47620.4 51.613 62 30 0 37 98 3 64 3.56e-14 72.0
Msa1138880 AT1G13690.1 34.314 102 63 2 42 142 15 113 4.96e-14 68.9
Msa1138880 AT1G60650.2 36.792 106 55 2 39 136 11 112 5.06e-14 70.9
Msa1138880 AT1G60650.1 36.792 106 55 2 39 136 11 112 5.06e-14 70.9
Msa1138880 AT5G54580.1 40.860 93 52 1 27 119 46 135 8.42e-14 67.8
Msa1138880 AT1G54080.1 36.364 77 49 0 42 118 150 226 1.08e-13 70.9
Msa1138880 AT1G20880.2 39.535 86 48 3 41 124 25 108 1.10e-13 69.7
Msa1138880 AT1G20880.3 39.535 86 48 3 41 124 25 108 1.10e-13 69.7
Msa1138880 AT1G20880.1 39.535 86 48 3 41 124 25 108 1.10e-13 69.7
Msa1138880 AT1G22910.2 35.106 94 55 3 40 129 13 104 1.52e-13 68.9
Msa1138880 AT1G22910.1 35.106 94 55 3 40 129 13 104 1.62e-13 68.9
Msa1138880 AT1G78260.1 40.260 77 45 1 41 117 18 93 2.70e-13 68.6
Msa1138880 AT1G33470.3 35.714 98 57 3 41 134 8 103 3.46e-13 67.8
Msa1138880 AT1G17370.2 37.662 77 48 0 42 118 141 217 4.00e-13 68.9
Msa1138880 AT1G17370.1 37.662 77 48 0 42 118 141 217 4.22e-13 68.9
Msa1138880 AT1G33470.1 35.714 98 57 3 41 134 8 103 4.26e-13 67.4
Msa1138880 AT1G33470.2 35.714 98 57 3 41 134 8 103 4.29e-13 67.4
Msa1138880 AT1G78260.2 39.744 78 46 1 40 117 17 93 5.25e-13 67.8
Msa1138880 AT3G20930.2 34.188 117 58 3 20 125 270 378 1.02e-12 67.8
Msa1138880 AT1G22910.3 35.484 93 54 3 41 129 14 104 1.17e-12 67.4
Msa1138880 AT1G73530.1 34.146 82 54 0 39 120 76 157 2.62e-12 64.3
Msa1138880 AT3G15010.1 31.897 116 64 3 6 116 45 150 2.86e-12 66.6
Msa1138880 AT3G15010.2 31.897 116 64 3 6 116 45 150 2.86e-12 66.6
Msa1138880 AT4G16280.2 39.773 88 49 3 38 121 118 205 5.84e-12 65.9
Msa1138880 AT4G16280.4 39.773 88 49 3 38 121 43 130 6.26e-12 65.9
Msa1138880 AT1G47490.1 36.170 94 59 1 42 134 199 292 6.67e-12 65.5
Msa1138880 AT4G16280.3 39.773 88 49 3 38 121 118 205 6.99e-12 65.5
Msa1138880 AT1G54080.2 34.568 81 49 1 42 118 150 230 7.03e-12 65.5
Msa1138880 AT1G47490.2 36.170 94 59 1 42 134 199 292 7.48e-12 64.7
Msa1138880 AT1G58470.2 39.241 79 46 1 41 119 7 83 7.90e-12 65.1
Msa1138880 AT1G58470.1 39.241 79 46 1 41 119 7 83 7.90e-12 65.1
Msa1138880 AT3G13224.2 28.125 96 64 1 35 125 104 199 8.78e-12 64.7
Msa1138880 AT3G13224.2 34.831 89 56 1 31 119 10 96 2.33e-11 63.5
Msa1138880 AT5G51300.1 30.303 132 69 1 42 150 482 613 8.97e-12 65.5
Msa1138880 AT5G51300.2 30.303 132 69 1 42 150 482 613 8.97e-12 65.5
Msa1138880 AT5G51300.3 30.303 132 69 1 42 150 482 613 8.97e-12 65.5
Msa1138880 AT2G19380.1 34.021 97 61 2 30 126 398 491 1.36e-11 64.7
Msa1138880 AT3G13224.3 32.184 87 57 1 33 119 3 87 1.56e-11 63.9
Msa1138880 AT3G13224.3 28.125 96 64 1 35 125 95 190 1.66e-11 63.9
Msa1138880 AT1G47500.1 35.106 94 60 1 42 134 201 294 1.84e-11 63.9
Msa1138880 AT5G19960.1 38.298 94 54 2 42 132 9 101 2.09e-11 63.5
Msa1138880 AT1G49600.1 33.613 119 78 1 42 159 215 333 2.52e-11 63.5
Msa1138880 AT5G08695.1 32.500 80 54 0 41 120 228 307 2.96e-11 63.9
Msa1138880 AT2G22100.1 35.556 90 53 2 33 122 156 240 2.98e-11 63.2
Msa1138880 AT5G40490.1 38.043 92 51 2 36 122 121 211 3.02e-11 63.5
Msa1138880 AT5G40490.1 36.585 82 50 1 38 119 40 119 5.12e-11 62.8
Msa1138880 AT4G36960.1 37.975 79 47 1 41 119 4 80 3.13e-11 63.2
Msa1138880 AT4G36960.2 37.975 79 47 1 41 119 4 80 3.13e-11 63.2
Msa1138880 AT1G49760.1 35.443 79 51 0 39 117 44 122 3.16e-11 63.5
Msa1138880 AT1G49760.2 35.443 79 51 0 39 117 44 122 3.16e-11 63.5
Msa1138880 AT2G43370.2 31.765 85 58 0 40 124 64 148 3.30e-11 61.6
Msa1138880 AT5G53680.1 35.065 77 49 1 40 116 13 88 3.89e-11 60.8
Msa1138880 AT1G17640.2 40.506 79 45 1 41 119 67 143 4.11e-11 62.8
Msa1138880 AT1G17640.1 40.506 79 45 1 41 119 67 143 4.11e-11 62.8
Msa1138880 AT1G17640.3 40.506 79 45 1 41 119 67 143 4.11e-11 62.8
Msa1138880 AT1G49600.3 33.613 119 78 1 42 159 215 333 4.12e-11 63.2
Msa1138880 AT1G49600.2 33.613 119 78 1 42 159 215 333 4.12e-11 63.2
Msa1138880 AT1G47500.2 35.106 94 60 1 42 134 201 294 4.24e-11 62.8
Msa1138880 AT5G53720.1 38.158 76 46 1 41 116 10 84 4.29e-11 58.9
Msa1138880 AT4G20030.1 30.769 78 54 0 39 116 39 116 7.76e-11 59.3
Msa1138880 AT4G00830.3 28.049 82 59 0 40 121 116 197 8.23e-11 62.4
Msa1138880 AT4G00830.5 28.049 82 59 0 40 121 116 197 8.23e-11 62.4
Msa1138880 AT2G37510.2 30.769 104 47 1 36 114 30 133 8.57e-11 59.7
Msa1138880 AT5G11412.1 36.364 77 48 1 40 116 52 127 8.74e-11 59.7
Msa1138880 AT4G00830.2 28.049 82 59 0 40 121 116 197 8.85e-11 62.0
Msa1138880 AT4G00830.1 28.049 82 59 0 40 121 116 197 8.85e-11 62.0
Msa1138880 AT4G00830.6 28.049 82 59 0 40 121 116 197 8.85e-11 62.0

Find 98 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGCGTTCTTTGGTAAAA+TGG 0.181499 7_4:+8828288 Msa1138880:exon
ATTCAGCAGCAACTCTAATT+TGG 0.204920 7_4:+8830570 Msa1138880:CDS
ACAGGCAGGTCCCGAGGTTT+TGG 0.269411 7_4:+8829367 Msa1138880:CDS
GGTGGTGGTGGCGGAAATTA+TGG 0.279552 7_4:+8830430 Msa1138880:CDS
CCTGGTTATCCATGGCTTGC+AGG 0.291915 7_4:-8829429 None:intergenic
CGTACCTTGAAAAGCGATTA+TGG 0.302599 7_4:-8827086 None:intergenic
AGTGGCGGTGGTGGAAATTA+TGG 0.311221 7_4:+8830373 Msa1138880:CDS
TGTGCTTGACAGCAGAATTC+TGG 0.314240 7_4:-8828321 None:intergenic
GGTGGTGGTGGCGGAAATTA+TGG 0.318069 7_4:+8830409 Msa1138880:CDS
GTTTGAGCAATGGCGTTCTT+TGG 0.330058 7_4:+8828280 Msa1138880:exon
GGCGGCTATGGCGGTGGTGG+CGG 0.332752 7_4:+8830322 Msa1138880:CDS
GGCGGTGGTGGCGGCGGCTA+TGG 0.332870 7_4:+8830331 Msa1138880:CDS
GAAAGGGCACGTCCTGGATT+TGG 0.363001 7_4:+8830277 Msa1138880:CDS
CGCTATGGAGAAGTTCTTGA+TGG 0.365325 7_4:+8828546 Msa1138880:CDS
TTCAGCAGCAACTCTAATTT+GGG 0.367310 7_4:+8830571 Msa1138880:CDS
AGCAACTCTAATTTGGGATA+TGG 0.368185 7_4:+8830577 Msa1138880:CDS
GGCGGCTATGGCGGTGGTGG+CGG 0.369506 7_4:+8830343 Msa1138880:CDS
GGCTATGGCGGTGGTGGCGG+CGG 0.379530 7_4:+8830325 Msa1138880:CDS
GGTTATGGTGGCGGCGGCTA+TGG 0.387914 7_4:+8830310 Msa1138880:CDS
ATTATCATGGATCGTGAAAC+AGG 0.392250 7_4:+8829349 Msa1138880:CDS
GGTGGCGGCGGCTATGGCGG+TGG 0.411672 7_4:+8830337 Msa1138880:CDS
GGCGGTGGCTATGGTGGTGG+TGG 0.412717 7_4:+8830397 Msa1138880:CDS
GGAGAAGGTAAGAATGAATT+CGG 0.414846 7_4:+8830622 Msa1138880:CDS
GGCGGCGGCTATGGCGGTGG+TGG 0.419000 7_4:+8830319 Msa1138880:CDS
GGCGGCGGCTATGGCGGTGG+TGG 0.419000 7_4:+8830340 Msa1138880:CDS
GGCTATGGCGGTGGTGGCGG+TGG 0.420092 7_4:+8830346 Msa1138880:CDS
AATTATGGTGGCGGTGGCTA+TGG 0.434778 7_4:+8830388 Msa1138880:CDS
TGGCCACCAGTATAGCTGTC+TGG 0.436161 7_4:-8830517 None:intergenic
GCTATACTGGTGGCCATGTC+GGG 0.440508 7_4:+8830524 Msa1138880:CDS
GGTGGCTATGGTGGTGGTGG+CGG 0.440709 7_4:+8830400 Msa1138880:CDS
GGTGGTGGCGGCGGCTATGG+CGG 0.446142 7_4:+8830334 Msa1138880:CDS
ATGGCGTTCTTTGGTAAAAT+GGG 0.448549 7_4:+8828289 Msa1138880:CDS
CTTCTCCTATTCCGTCATCC+TGG 0.452476 7_4:-8830606 None:intergenic
GGTGGTGGCGGTGGCTATAG+TGG 0.453178 7_4:+8830355 Msa1138880:CDS
TCAGATTGATCATTGTTCTC+TGG 0.454360 7_4:-8830670 None:intergenic
CGTCCTGGATTTGGTGGTGG+TGG 0.454483 7_4:+8830286 Msa1138880:CDS
TGGTTGTCACAGGAACTTCA+TGG 0.455403 7_4:+8830226 Msa1138880:intron
GGCCACCAGTATAGCTGTCT+GGG 0.458472 7_4:-8830516 None:intergenic
TGCTGTCAAGCACATCAATC+AGG 0.461224 7_4:+8828330 Msa1138880:CDS
GGAAATTATGGTGGTGGTGG+CGG 0.465603 7_4:+8830421 Msa1138880:CDS
TCTTTCAGCAAAGATTATCA+TGG 0.471143 7_4:+8829336 Msa1138880:intron
GGTGGTGGTGGTTATGGTGG+CGG 0.471766 7_4:+8830301 Msa1138880:CDS
CCTGGATTTGGTGGTGGTGG+TGG 0.475490 7_4:+8830289 Msa1138880:CDS
GGTGGCTATAGTGGCGGTGG+TGG 0.482262 7_4:+8830364 Msa1138880:CDS
GGTGGCGGCGGCTATGGCGG+TGG 0.485705 7_4:+8830316 Msa1138880:CDS
TATGGTGGTGGTGGTACATA+TGG 0.495451 7_4:+8830448 Msa1138880:CDS
ATCCATGGCTTGCAGGGCAG+AGG 0.505179 7_4:-8829422 None:intergenic
GGTGGCGGTGGCTATGGTGG+TGG 0.511997 7_4:+8830394 Msa1138880:CDS
AGCCACCAGGATGACGGAAT+AGG 0.512460 7_4:+8830601 Msa1138880:CDS
GGCGGTGGCTATAGTGGCGG+TGG 0.516623 7_4:+8830361 Msa1138880:CDS
CGCAATGATTATAACAGTAG+TGG 0.517265 7_4:+8830472 Msa1138880:CDS
AGCTATACTGGTGGCCATGT+CGG 0.518050 7_4:+8830523 Msa1138880:CDS
GCTACAGAAAGGGCACGTCC+TGG 0.522628 7_4:+8830271 Msa1138880:CDS
CTGGTTATCCATGGCTTGCA+GGG 0.522966 7_4:-8829428 None:intergenic
GGCGGAAATTATGGTGGTGG+TGG 0.524909 7_4:+8830418 Msa1138880:CDS
TATGGTGGCGGTGGCTATGG+TGG 0.530534 7_4:+8830391 Msa1138880:CDS
CCTGCAAGCCATGGATAACC+AGG 0.536544 7_4:+8829429 Msa1138880:CDS
GTCGGGACTACTTATGCAGC+TGG 0.539987 7_4:+8830541 Msa1138880:CDS
GGCACATGGTTGTTATCTAA+CGG 0.545472 7_4:-8830649 None:intergenic
TATGGTGGCGGCGGCTATGG+CGG 0.548263 7_4:+8830313 Msa1138880:CDS
AGTGAACTATGCTACAGAAA+GGG 0.549793 7_4:+8830261 Msa1138880:CDS
GGCGGAAATTATGGTGGTGG+TGG 0.550547 7_4:+8830439 Msa1138880:CDS
GCACGTCCTGGATTTGGTGG+TGG 0.551335 7_4:+8830283 Msa1138880:CDS
TCATGGATCGTGAAACAGGC+AGG 0.555548 7_4:+8829353 Msa1138880:CDS
AGGGCACGTCCTGGATTTGG+TGG 0.560582 7_4:+8830280 Msa1138880:CDS
ATCCTCTGCCCTGCAAGCCA+TGG 0.561128 7_4:+8829420 Msa1138880:CDS
AGTTATGAAGCCAAAACCTC+GGG 0.561538 7_4:-8829377 None:intergenic
GGTGGCGGAAATTATGGTGG+TGG 0.561564 7_4:+8830415 Msa1138880:CDS
GGTGGCGGAAATTATGGTGG+TGG 0.561564 7_4:+8830436 Msa1138880:CDS
GGTGGTGGTTATGGTGGCGG+CGG 0.562361 7_4:+8830304 Msa1138880:CDS
AAATATCTGACCTCACCGAC+GGG 0.568765 7_4:-8830707 None:intergenic
GATCATTGTTCTCTGGCACA+TGG 0.570782 7_4:-8830663 None:intergenic
GGTGGTGGCGGAAATTATGG+TGG 0.577570 7_4:+8830412 Msa1138880:CDS
GGTGGTGGCGGAAATTATGG+TGG 0.577570 7_4:+8830433 Msa1138880:CDS
GGTGGAAATTATGGTGGCGG+TGG 0.579466 7_4:+8830382 Msa1138880:CDS
GAGTGAACTATGCTACAGAA+AGG 0.582117 7_4:+8830260 Msa1138880:CDS
TGATAATACCTGGTTATCCA+TGG 0.583626 7_4:-8829437 None:intergenic
TATGGTAGCCACCAGGATGA+CGG 0.586796 7_4:+8830595 Msa1138880:CDS
GGTGGTGGAAATTATGGTGG+CGG 0.594867 7_4:+8830379 Msa1138880:CDS
CATAACTTTCGCAACTAGCG+AGG 0.595409 7_4:+8829393 Msa1138880:CDS
CTGCATAAGTAGTCCCGACA+TGG 0.604557 7_4:-8830537 None:intergenic
AAGTTATGAAGCCAAAACCT+CGG 0.608782 7_4:-8829378 None:intergenic
CGTGAAACAGGCAGGTCCCG+AGG 0.612383 7_4:+8829361 Msa1138880:CDS
CAGGATGACGGAATAGGAGA+AGG 0.614651 7_4:+8830607 Msa1138880:CDS
AAAATATCTGACCTCACCGA+CGG 0.626956 7_4:-8830708 None:intergenic
CTCCTATTCCGTCATCCTGG+TGG 0.633150 7_4:-8830603 None:intergenic
GCCCCAGACAGCTATACTGG+TGG 0.637102 7_4:+8830514 Msa1138880:CDS
GGCGGTGGTGGAAATTATGG+TGG 0.639052 7_4:+8830376 Msa1138880:CDS
TGTCACAGGAACTTCATGGT+CGG 0.655084 7_4:+8830230 Msa1138880:intron
ATGACTATGCTGAGACCCGT+CGG 0.655569 7_4:+8830692 Msa1138880:CDS
CTGATTGCTTGAAATAACGA+AGG 0.656640 7_4:-8828370 None:intergenic
TTTGGGATATGGTAGCCACC+AGG 0.660216 7_4:+8830588 Msa1138880:CDS
TATGCTGAGACCCGTCGGTG+AGG 0.660903 7_4:+8830697 Msa1138880:CDS
GCCACCAGTATAGCTGTCTG+GGG 0.683848 7_4:-8830515 None:intergenic
GGGACTACTTATGCAGCTGG+TGG 0.685565 7_4:+8830544 Msa1138880:CDS
AGTAGTGGAAGCTATGCAAG+TGG 0.688222 7_4:+8830487 Msa1138880:CDS
GGTGGCGGTGGCTATAGTGG+CGG 0.689439 7_4:+8830358 Msa1138880:CDS
AGTGGAAGCTATGCAAGTGG+TGG 0.727125 7_4:+8830490 Msa1138880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAACTATTCAATAATTT+CGG + chr7_4:8827973-8827992 Msa1138880:intron 10.0%
!!! ATCATGTTAAATTTTAAAAA+TGG + chr7_4:8828437-8828456 Msa1138880:intron 10.0%
!!! TTATTATTTCTAACTTATTT+CGG - chr7_4:8829589-8829608 None:intergenic 10.0%
!!! TATTTGTACAATTTTTTATA+TGG + chr7_4:8830090-8830109 Msa1138880:intron 10.0%
!! TTTATTGTACAAAATTCAAT+TGG + chr7_4:8827272-8827291 Msa1138880:intron 15.0%
!! TTATTGTACAAAATTCAATT+GGG + chr7_4:8827273-8827292 Msa1138880:intron 15.0%
!!! TGCTATTTTAATTCTTTTTA+TGG + chr7_4:8828155-8828174 Msa1138880:intron 15.0%
!!! AATTAGAAATTCAAACTTTT+TGG - chr7_4:8828895-8828914 None:intergenic 15.0%
!!! TTTAATTTTAAAGAAAAGTC+CGG + chr7_4:8828967-8828986 Msa1138880:intron 15.0%
!! TCTATCAAATCATATATAAA+AGG - chr7_4:8829177-8829196 None:intergenic 15.0%
!! TAATAGTCATATAAAAAAAG+CGG + chr7_4:8829238-8829257 Msa1138880:intron 15.0%
!! CTTGAAGAATATATTTAAAA+AGG + chr7_4:8829696-8829715 Msa1138880:intron 15.0%
!! TCAATTTGAATTTATGATAA+TGG - chr7_4:8829948-8829967 None:intergenic 15.0%
!!! TTCTTATTTACCTGTTAATT+GGG + chr7_4:8827182-8827201 Msa1138880:intron 20.0%
!!! TTTTTTTCCTTAGATTTTTG+CGG + chr7_4:8827379-8827398 Msa1138880:intron 20.0%
!!! ACTTTAAGACATAAAAATCA+CGG + chr7_4:8827489-8827508 Msa1138880:intron 20.0%
!!! TTTAATTCTTTTTATGGAAC+CGG + chr7_4:8828161-8828180 Msa1138880:intron 20.0%
!! TCATAAGTTACAATTAACAA+TGG + chr7_4:8828209-8828228 Msa1138880:intron 20.0%
!!! TCAAATTTTAATCATAATGC+AGG + chr7_4:8828477-8828496 Msa1138880:intron 20.0%
!! ATATAAAATAAGCATCATAC+TGG - chr7_4:8828698-8828717 None:intergenic 20.0%
!!! GTATGATGCTTATTTTATAT+AGG + chr7_4:8828698-8828717 Msa1138880:intron 20.0%
!! AGAAATAATAAATGCATATG+TGG + chr7_4:8829598-8829617 Msa1138880:intron 20.0%
!! AAAAGGAAATTCTTTCAAAA+TGG + chr7_4:8829713-8829732 Msa1138880:intron 20.0%
!! AAAGGAAATTCTTTCAAAAT+GGG + chr7_4:8829714-8829733 Msa1138880:intron 20.0%
!!! ATTATTTTTGAATACTCAGT+CGG - chr7_4:8829757-8829776 None:intergenic 20.0%
!!! TATTTTTACCAAATTATCCT+TGG + chr7_4:8829904-8829923 Msa1138880:intron 20.0%
!! AAATTGAAATATAACGACTT+GGG + chr7_4:8829961-8829980 Msa1138880:intron 20.0%
!! AAAATTGTACAAATAGAAGT+TGG - chr7_4:8830085-8830104 None:intergenic 20.0%
! TGAGATCAGAATTGAAAAAT+GGG - chr7_4:8827145-8827164 None:intergenic 25.0%
!! GTTCTTATTTACCTGTTAAT+TGG + chr7_4:8827181-8827200 Msa1138880:intron 25.0%
! TTTGAGTGATGTTAATGTTA+TGG + chr7_4:8827355-8827374 Msa1138880:intron 25.0%
! AATGAATGAATAGAGTTTGA+TGG + chr7_4:8827422-8827441 Msa1138880:intron 25.0%
! TATTCAATAATTTCGGTACT+TGG + chr7_4:8827980-8827999 Msa1138880:intron 25.0%
!! TACCAATTTTTCATCATATC+AGG + chr7_4:8828593-8828612 Msa1138880:intron 25.0%
! AACCTGATATGATGAAAAAT+TGG - chr7_4:8828598-8828617 None:intergenic 25.0%
! ATTCAGATACAATTTACAAG+TGG - chr7_4:8828646-8828665 None:intergenic 25.0%
!!! TATAGGCTTTAATAGACTTT+TGG + chr7_4:8828715-8828734 Msa1138880:intron 25.0%
!!! TCAAACTTTTTGGTGTATTT+TGG - chr7_4:8828885-8828904 None:intergenic 25.0%
! ATAATCATCATTTATTGCTG+TGG - chr7_4:8829013-8829032 None:intergenic 25.0%
! TAAAATCGCTCAAAATAAAG+TGG + chr7_4:8829099-8829118 Msa1138880:intron 25.0%
! AAAATCGCTCAAAATAAAGT+GGG + chr7_4:8829100-8829119 Msa1138880:intron 25.0%
! GAAAGAACATTAAAAATGAG+AGG - chr7_4:8829322-8829341 None:intergenic 25.0%
! TTTCGGCTAAATAAATGTAA+GGG - chr7_4:8829572-8829591 None:intergenic 25.0%
! ATTTCGGCTAAATAAATGTA+AGG - chr7_4:8829573-8829592 None:intergenic 25.0%
!!! TTATTTTTGAATACTCAGTC+GGG - chr7_4:8829756-8829775 None:intergenic 25.0%
! TTGCTTGTTTCACAAATTTA+AGG + chr7_4:8829785-8829804 Msa1138880:intron 25.0%
! AACAATGCTTAACAATGATT+TGG - chr7_4:8829848-8829867 None:intergenic 25.0%
! CAAATTGAAATATAACGACT+TGG + chr7_4:8829960-8829979 Msa1138880:intron 25.0%
!! ATGCATATAGTATTAGTTTG+AGG + chr7_4:8829988-8830007 Msa1138880:intron 25.0%
!! TGCATATAGTATTAGTTTGA+GGG + chr7_4:8829989-8830008 Msa1138880:intron 25.0%
! TTGTAGCATCTAAATTATGT+TGG + chr7_4:8830206-8830225 Msa1138880:intron 25.0%
GTGAGATCAGAATTGAAAAA+TGG - chr7_4:8827146-8827165 None:intergenic 30.0%
CTAATAGAAACCCAATTAAC+AGG - chr7_4:8827195-8827214 None:intergenic 30.0%
!!! CTTTTTCAGTATTTTGACCT+AGG + chr7_4:8827220-8827239 Msa1138880:intron 30.0%
TATATGTCCGCAAAAATCTA+AGG - chr7_4:8827389-8827408 None:intergenic 30.0%
! TGTAGATTTGTGTGTTTTAC+CGG + chr7_4:8827521-8827540 Msa1138880:intron 30.0%
TCGAGGATTACGTAAAATAA+TGG + chr7_4:8827626-8827645 Msa1138880:intron 30.0%
GCTTATTTGTACACGAAAAA+AGG - chr7_4:8827754-8827773 None:intergenic 30.0%
!!! AGTGGTAATAACAGGTTTTT+TGG - chr7_4:8827845-8827864 None:intergenic 30.0%
ATCATTTATCTTCCTCATAG+TGG - chr7_4:8827863-8827882 None:intergenic 30.0%
AATACATCAAACAGAGTACA+TGG - chr7_4:8827936-8827955 None:intergenic 30.0%
ATAATTTCGGTACTTGGAAA+TGG + chr7_4:8827986-8828005 Msa1138880:intron 30.0%
TAATTTCGGTACTTGGAAAT+GGG + chr7_4:8827987-8828006 Msa1138880:intron 30.0%
!! TTAAAAAAGGGTTCTAAGTG+GGG - chr7_4:8828052-8828071 None:intergenic 30.0%
!! CTTAAAAAAGGGTTCTAAGT+GGG - chr7_4:8828053-8828072 None:intergenic 30.0%
!! CAAAATCTATTTTGGAGGAT+GGG - chr7_4:8828111-8828130 None:intergenic 30.0%
! TTGACCACCAAAATCTATTT+TGG - chr7_4:8828119-8828138 None:intergenic 30.0%
! TAAGTGATACTAATTTTCCG+TGG + chr7_4:8828242-8828261 Msa1138880:intron 30.0%
GGGGAATATCAAAACATAAA+GGG - chr7_4:8828772-8828791 None:intergenic 30.0%
TGGGGAATATCAAAACATAA+AGG - chr7_4:8828773-8828792 None:intergenic 30.0%
GATGATTATCAGTGTCAATT+TGG + chr7_4:8829024-8829043 Msa1138880:intron 30.0%
TGTCAATTTGGAGGAAAATT+CGG + chr7_4:8829036-8829055 Msa1138880:intron 30.0%
! ATGTTTTTCCCTTTCTGATT+TGG - chr7_4:8829072-8829091 None:intergenic 30.0%
ATCAGAAAGGGAAAAACATA+AGG + chr7_4:8829073-8829092 Msa1138880:intron 30.0%
TCAGAAAGGGAAAAACATAA+GGG + chr7_4:8829074-8829093 Msa1138880:intron 30.0%
AAATCGCTCAAAATAAAGTG+GGG + chr7_4:8829101-8829120 Msa1138880:intron 30.0%
!! ATAGAGTGCTTACTTTGTTT+TGG + chr7_4:8829192-8829211 Msa1138880:intron 30.0%
TAGTCATATAAAAAAAGCGG+CGG + chr7_4:8829241-8829260 Msa1138880:intron 30.0%
TCTTTCAGCAAAGATTATCA+TGG + chr7_4:8829336-8829355 Msa1138880:intron 30.0%
TCATGAAAACTGATAATACC+TGG - chr7_4:8829450-8829469 None:intergenic 30.0%
! AAACACCTTTTGTTCATACA+AGG + chr7_4:8829515-8829534 Msa1138880:intron 30.0%
TATGTGGCTGTAATATCATA+AGG + chr7_4:8829614-8829633 Msa1138880:intron 30.0%
ACCATTATCATGATGAAAGA+TGG + chr7_4:8829874-8829893 Msa1138880:intron 30.0%
TCCATCTTTCATCATGATAA+TGG - chr7_4:8829878-8829897 None:intergenic 30.0%
AATGCTTACCAAGGATAATT+TGG - chr7_4:8829915-8829934 None:intergenic 30.0%
AAATTATCCTTGGTAAGCAT+TGG + chr7_4:8829914-8829933 Msa1138880:intron 30.0%
! TGGTAATGTGACAATTATTG+TGG + chr7_4:8830026-8830045 Msa1138880:intron 30.0%
! TAAATTATGTTGGTTGTCAC+AGG + chr7_4:8830216-8830235 Msa1138880:intron 30.0%
CACGATATTAAGCATTACCT+AGG - chr7_4:8827240-8827259 None:intergenic 35.0%
! GTAGATTTGTGTGTTTTACC+GGG + chr7_4:8827522-8827541 Msa1138880:intron 35.0%
! TAGATTTGTGTGTTTTACCG+GGG + chr7_4:8827523-8827542 Msa1138880:intron 35.0%
ATAGCATCACTATAGTGTAG+TGG - chr7_4:8827710-8827729 None:intergenic 35.0%
AAGGCAACTTTGTCAAATGA+CGG - chr7_4:8827735-8827754 None:intergenic 35.0%
AACCTGTTATTACCACTATG+AGG + chr7_4:8827848-8827867 Msa1138880:intron 35.0%
TTCCTCATAGTGGTAATAAC+AGG - chr7_4:8827853-8827872 None:intergenic 35.0%
AGATAAATGATGAACGCTAG+AGG + chr7_4:8827872-8827891 Msa1138880:intron 35.0%
GATAAATGATGAACGCTAGA+GGG + chr7_4:8827873-8827892 Msa1138880:intron 35.0%
!! GCTTAAAAAAGGGTTCTAAG+TGG - chr7_4:8828054-8828073 None:intergenic 35.0%
TGTAGGGAAGGCTTAAAAAA+GGG - chr7_4:8828064-8828083 None:intergenic 35.0%
TTGTAGGGAAGGCTTAAAAA+AGG - chr7_4:8828065-8828084 None:intergenic 35.0%
! TTTTAAGCCTTCCCTACAAA+TGG + chr7_4:8828066-8828085 Msa1138880:intron 35.0%
TTCCCTACAAATGGTGATTT+GGG + chr7_4:8828075-8828094 Msa1138880:intron 35.0%
!! CCAAAATCTATTTTGGAGGA+TGG - chr7_4:8828112-8828131 None:intergenic 35.0%
! CCATCCTCCAAAATAGATTT+TGG + chr7_4:8828109-8828128 Msa1138880:intron 35.0%
! TCCTCCAAAATAGATTTTGG+TGG + chr7_4:8828112-8828131 Msa1138880:intron 35.0%
!! ACCACCAAAATCTATTTTGG+AGG - chr7_4:8828116-8828135 None:intergenic 35.0%
! AATTCTTTTTATGGAACCGG+CGG + chr7_4:8828164-8828183 Msa1138880:intron 35.0%
ACCTTGAAAACATCAAACCA+CGG - chr7_4:8828262-8828281 None:intergenic 35.0%
!! TGTTTTCAAGGTTTGAGCAA+TGG + chr7_4:8828270-8828289 Msa1138880:intron 35.0%
AATGGCGTTCTTTGGTAAAA+TGG + chr7_4:8828288-8828307 Msa1138880:exon 35.0%
ATGGCGTTCTTTGGTAAAAT+GGG + chr7_4:8828289-8828308 Msa1138880:CDS 35.0%
CTGATTGCTTGAAATAACGA+AGG - chr7_4:8828373-8828392 None:intergenic 35.0%
! TCATCTGCCAAGCTTTTTAT+TGG + chr7_4:8828400-8828419 Msa1138880:CDS 35.0%
CATACCTCCAATAAAAAGCT+TGG - chr7_4:8828410-8828429 None:intergenic 35.0%
! GTATTGTGATTGTGCGATTT+TGG + chr7_4:8828746-8828765 Msa1138880:intron 35.0%
TCCAACTTTCATAGTTAGTG+TGG + chr7_4:8828830-8828849 Msa1138880:intron 35.0%
TTCATTTGCTCTCATCTGTA+CGG + chr7_4:8828921-8828940 Msa1138880:intron 35.0%
GATTATCAGTGTCAATTTGG+AGG + chr7_4:8829027-8829046 Msa1138880:intron 35.0%
AATTTGGAGGAAAATTCGGA+TGG + chr7_4:8829040-8829059 Msa1138880:intron 35.0%
AATCGCTCAAAATAAAGTGG+GGG + chr7_4:8829102-8829121 Msa1138880:intron 35.0%
! GTATCACAGTTAAGCGATTT+TGG - chr7_4:8829129-8829148 None:intergenic 35.0%
AATCGCTTAACTGTGATACT+TGG + chr7_4:8829130-8829149 Msa1138880:intron 35.0%
AAAAGGCTTAGTTGCACTTT+GGG - chr7_4:8829160-8829179 None:intergenic 35.0%
TAAAAGGCTTAGTTGCACTT+TGG - chr7_4:8829161-8829180 None:intergenic 35.0%
ATTATCATGGATCGTGAAAC+AGG + chr7_4:8829349-8829368 Msa1138880:CDS 35.0%
AAGTTATGAAGCCAAAACCT+CGG - chr7_4:8829381-8829400 None:intergenic 35.0%
TGATAATACCTGGTTATCCA+TGG - chr7_4:8829440-8829459 None:intergenic 35.0%
CTAAAAGTCACCAATTCACA+TGG + chr7_4:8829490-8829509 Msa1138880:intron 35.0%
! AGGTGTTTTACCATGTGAAT+TGG - chr7_4:8829503-8829522 None:intergenic 35.0%
CAACTCCTTGTATGAACAAA+AGG - chr7_4:8829523-8829542 None:intergenic 35.0%
! CTTTTGTTCATACAAGGAGT+TGG + chr7_4:8829521-8829540 Msa1138880:intron 35.0%
!! TGAGGGTAATAGTAGTTTTG+TGG + chr7_4:8830006-8830025 Msa1138880:intron 35.0%
ATGTGACAATTATTGTGGCA+CGG + chr7_4:8830031-8830050 Msa1138880:intron 35.0%
CTTTGCAAACCTCAAAATGT+TGG + chr7_4:8830174-8830193 Msa1138880:intron 35.0%
! GAAACATTGCCAACATTTTG+AGG - chr7_4:8830186-8830205 None:intergenic 35.0%
AGTGAACTATGCTACAGAAA+GGG + chr7_4:8830261-8830280 Msa1138880:CDS 35.0%
CGCAATGATTATAACAGTAG+TGG + chr7_4:8830472-8830491 Msa1138880:CDS 35.0%
ATTCAGCAGCAACTCTAATT+TGG + chr7_4:8830570-8830589 Msa1138880:CDS 35.0%
TTCAGCAGCAACTCTAATTT+GGG + chr7_4:8830571-8830590 Msa1138880:CDS 35.0%
! AGCAACTCTAATTTGGGATA+TGG + chr7_4:8830577-8830596 Msa1138880:CDS 35.0%
GGAGAAGGTAAGAATGAATT+CGG + chr7_4:8830622-8830641 Msa1138880:CDS 35.0%
TCAGATTGATCATTGTTCTC+TGG - chr7_4:8830673-8830692 None:intergenic 35.0%
CGTACCTTGAAAAGCGATTA+TGG - chr7_4:8827089-8827108 None:intergenic 40.0%
TTTCATAGTGTTGTCAACCG+CGG + chr7_4:8827452-8827471 Msa1138880:intron 40.0%
! AGATTTGTGTGTTTTACCGG+GGG + chr7_4:8827524-8827543 Msa1138880:intron 40.0%
GTATATTACTTTCTCTCCCC+CGG - chr7_4:8827543-8827562 None:intergenic 40.0%
TAATCCTCGATTGACAGGTT+GGG - chr7_4:8827616-8827635 None:intergenic 40.0%
TTACGTAATCCTCGATTGAC+AGG - chr7_4:8827621-8827640 None:intergenic 40.0%
AAACAGAGTACATGGTTGTG+TGG - chr7_4:8827928-8827947 None:intergenic 40.0%
CAAATCACCATTTGTAGGGA+AGG - chr7_4:8828076-8828095 None:intergenic 40.0%
CTTCCCTACAAATGGTGATT+TGG + chr7_4:8828074-8828093 Msa1138880:intron 40.0%
TCCCTACAAATGGTGATTTG+GGG + chr7_4:8828076-8828095 Msa1138880:intron 40.0%
TCCCCAAATCACCATTTGTA+GGG - chr7_4:8828080-8828099 None:intergenic 40.0%
ATCCCCAAATCACCATTTGT+AGG - chr7_4:8828081-8828100 None:intergenic 40.0%
AAGTACAAACATTTCACCGC+CGG - chr7_4:8828183-8828202 None:intergenic 40.0%
! TCCGTGGTTTGATGTTTTCA+AGG + chr7_4:8828258-8828277 Msa1138880:intron 40.0%
AAAAAGCTTGGCAGATGACA+TGG - chr7_4:8828398-8828417 None:intergenic 40.0%
! TCTGCCAAGCTTTTTATTGG+AGG + chr7_4:8828403-8828422 Msa1138880:CDS 40.0%
CATAGCGAGAAAAAGCTTCT+CGG - chr7_4:8828533-8828552 None:intergenic 40.0%
TCGCACAATCACAATACTCT+GGG - chr7_4:8828743-8828762 None:intergenic 40.0%
ATCGCACAATCACAATACTC+TGG - chr7_4:8828744-8828763 None:intergenic 40.0%
! CTTAGTGCAAATTTGGGATG+GGG - chr7_4:8828791-8828810 None:intergenic 40.0%
! CCTTAGTGCAAATTTGGGAT+GGG - chr7_4:8828792-8828811 None:intergenic 40.0%
CCATCCCAAATTTGCACTAA+GGG + chr7_4:8828790-8828809 Msa1138880:intron 40.0%
CATCCCAAATTTGCACTAAG+GGG + chr7_4:8828791-8828810 Msa1138880:intron 40.0%
TGTCCCCTTAGTGCAAATTT+GGG - chr7_4:8828797-8828816 None:intergenic 40.0%
ATGTCCCCTTAGTGCAAATT+TGG - chr7_4:8828798-8828817 None:intergenic 40.0%
GCCACACTAACTATGAAAGT+TGG - chr7_4:8828834-8828853 None:intergenic 40.0%
TCATTTGCTCTCATCTGTAC+GGG + chr7_4:8828922-8828941 Msa1138880:intron 40.0%
!!! CATCTGTACGGGTTGATTTT+TGG + chr7_4:8828933-8828952 Msa1138880:intron 40.0%
TGGAGACTACCAAATCAGAA+AGG + chr7_4:8829060-8829079 Msa1138880:intron 40.0%
GGAGACTACCAAATCAGAAA+GGG + chr7_4:8829061-8829080 Msa1138880:intron 40.0%
ATCGCTCAAAATAAAGTGGG+GGG + chr7_4:8829103-8829122 Msa1138880:intron 40.0%
AGTTATGAAGCCAAAACCTC+GGG - chr7_4:8829380-8829399 None:intergenic 40.0%
TTGTTCATACAAGGAGTTGG+AGG + chr7_4:8829524-8829543 Msa1138880:intron 40.0%
GAATACACCAATGCTTACCA+AGG - chr7_4:8829924-8829943 None:intergenic 40.0%
GAGTGAACTATGCTACAGAA+AGG + chr7_4:8830260-8830279 Msa1138880:CDS 40.0%
GGCACATGGTTGTTATCTAA+CGG - chr7_4:8830652-8830671 None:intergenic 40.0%
!! GCAGCCATAATCGCTTTTCA+AGG + chr7_4:8827082-8827101 Msa1138880:five_prime_UTR 45.0%
TGGGATTTAGCGACAGGATT+GGG - chr7_4:8827597-8827616 None:intergenic 45.0%
TTGGGATTTAGCGACAGGAT+TGG - chr7_4:8827598-8827617 None:intergenic 45.0%
AAATCCCAACCTGTCAATCG+AGG + chr7_4:8827609-8827628 Msa1138880:intron 45.0%
GTAATCCTCGATTGACAGGT+TGG - chr7_4:8827617-8827636 None:intergenic 45.0%
!! TGGTTTGTTCAAACTCCGCT+AGG + chr7_4:8827646-8827665 Msa1138880:intron 45.0%
GTTTGAGCAATGGCGTTCTT+TGG + chr7_4:8828280-8828299 Msa1138880:exon 45.0%
TGTGCTTGACAGCAGAATTC+TGG - chr7_4:8828324-8828343 None:intergenic 45.0%
TGCTGTCAAGCACATCAATC+AGG + chr7_4:8828330-8828349 Msa1138880:CDS 45.0%
!! CGAGAAGCTTTTTCTCGCTA+TGG + chr7_4:8828531-8828550 Msa1138880:CDS 45.0%
CGCTATGGAGAAGTTCTTGA+TGG + chr7_4:8828546-8828565 Msa1138880:CDS 45.0%
GCACAATCACAATACTCTGG+GGG - chr7_4:8828741-8828760 None:intergenic 45.0%
CGCACAATCACAATACTCTG+GGG - chr7_4:8828742-8828761 None:intergenic 45.0%
CCCATCCCAAATTTGCACTA+AGG + chr7_4:8828789-8828808 Msa1138880:intron 45.0%
CCCTTAGTGCAAATTTGGGA+TGG - chr7_4:8828793-8828812 None:intergenic 45.0%
ATCCAACTCTGATCGTCAAC+CGG - chr7_4:8828989-8829008 None:intergenic 45.0%
CGCTTAACTGTGATACTTGG+AGG + chr7_4:8829133-8829152 Msa1138880:intron 45.0%
CATAACTTTCGCAACTAGCG+AGG + chr7_4:8829393-8829412 Msa1138880:CDS 45.0%
TGACAATTATTGTGGCACGG+AGG + chr7_4:8830034-8830053 Msa1138880:intron 45.0%
GACAATTATTGTGGCACGGA+GGG + chr7_4:8830035-8830054 Msa1138880:intron 45.0%
TGGTTGTCACAGGAACTTCA+TGG + chr7_4:8830226-8830245 Msa1138880:intron 45.0%
TGTCACAGGAACTTCATGGT+CGG + chr7_4:8830230-8830249 Msa1138880:intron 45.0%
!! TATGGTGGTGGTGGTACATA+TGG + chr7_4:8830448-8830467 Msa1138880:CDS 45.0%
! AGTAGTGGAAGCTATGCAAG+TGG + chr7_4:8830487-8830506 Msa1138880:CDS 45.0%
GATCATTGTTCTCTGGCACA+TGG - chr7_4:8830666-8830685 None:intergenic 45.0%
TAGTGTTGTCAACCGCGGAT+TGG + chr7_4:8827457-8827476 Msa1138880:intron 50.0%
AGTGTTGTCAACCGCGGATT+GGG + chr7_4:8827458-8827477 Msa1138880:intron 50.0%
! ACAGGTTGGGATTTAGCGAC+AGG - chr7_4:8827603-8827622 None:intergenic 50.0%
CAATGCACAATCTCGCCTAG+CGG - chr7_4:8827664-8827683 None:intergenic 50.0%
TCATGGATCGTGAAACAGGC+AGG + chr7_4:8829353-8829372 Msa1138880:CDS 50.0%
! CTGGTTATCCATGGCTTGCA+GGG - chr7_4:8829431-8829450 None:intergenic 50.0%
!! TTTGGTGGTGGTGGTGGTTA+TGG + chr7_4:8830295-8830314 Msa1138880:CDS 50.0%
!! AGTGGCGGTGGTGGAAATTA+TGG + chr7_4:8830373-8830392 Msa1138880:CDS 50.0%
!! GGTGGTGGAAATTATGGTGG+CGG + chr7_4:8830379-8830398 Msa1138880:CDS 50.0%
!! AATTATGGTGGCGGTGGCTA+TGG + chr7_4:8830388-8830407 Msa1138880:CDS 50.0%
!! GGAAATTATGGTGGTGGTGG+CGG + chr7_4:8830421-8830440 Msa1138880:CDS 50.0%
AGTGGAAGCTATGCAAGTGG+TGG + chr7_4:8830490-8830509 Msa1138880:CDS 50.0%
AGCTATACTGGTGGCCATGT+CGG + chr7_4:8830523-8830542 Msa1138880:CDS 50.0%
CTGCATAAGTAGTCCCGACA+TGG - chr7_4:8830540-8830559 None:intergenic 50.0%
! TTTGGGATATGGTAGCCACC+AGG + chr7_4:8830588-8830607 Msa1138880:CDS 50.0%
TATGGTAGCCACCAGGATGA+CGG + chr7_4:8830595-8830614 Msa1138880:CDS 50.0%
CTTCTCCTATTCCGTCATCC+TGG - chr7_4:8830609-8830628 None:intergenic 50.0%
!! CAGGATGACGGAATAGGAGA+AGG + chr7_4:8830607-8830626 Msa1138880:CDS 50.0%
ATGACTATGCTGAGACCCGT+CGG + chr7_4:8830692-8830711 Msa1138880:CDS 50.0%
AGTCGCTGAATCCCAATCCG+CGG - chr7_4:8827472-8827491 None:intergenic 55.0%
GTCCGGTTGACGATCAGAGT+TGG + chr7_4:8828984-8829003 Msa1138880:intron 55.0%
! CCTGGTTATCCATGGCTTGC+AGG - chr7_4:8829432-8829451 None:intergenic 55.0%
CCTGCAAGCCATGGATAACC+AGG + chr7_4:8829429-8829448 Msa1138880:CDS 55.0%
! GAAAGGGCACGTCCTGGATT+TGG + chr7_4:8830277-8830296 Msa1138880:CDS 55.0%
!! GGCGGTGGTGGAAATTATGG+TGG + chr7_4:8830376-8830395 Msa1138880:CDS 55.0%
!! GGTGGAAATTATGGTGGCGG+TGG + chr7_4:8830382-8830401 Msa1138880:CDS 55.0%
!! GGTGGTGGTGGCGGAAATTA+TGG + chr7_4:8830409-8830428 Msa1138880:CDS 55.0%
!! GGTGGTGGCGGAAATTATGG+TGG + chr7_4:8830412-8830431 Msa1138880:CDS 55.0%
!! GGTGGCGGAAATTATGGTGG+TGG + chr7_4:8830415-8830434 Msa1138880:CDS 55.0%
!! GGCGGAAATTATGGTGGTGG+TGG + chr7_4:8830418-8830437 Msa1138880:CDS 55.0%
!! GGTGGTGGTGGCGGAAATTA+TGG + chr7_4:8830409-8830428 Msa1138880:CDS 55.0%
!! GGTGGTGGCGGAAATTATGG+TGG + chr7_4:8830412-8830431 Msa1138880:CDS 55.0%
!! GGTGGCGGAAATTATGGTGG+TGG + chr7_4:8830415-8830434 Msa1138880:CDS 55.0%
!! GGCGGAAATTATGGTGGTGG+TGG + chr7_4:8830418-8830437 Msa1138880:CDS 55.0%
GCCACCAGTATAGCTGTCTG+GGG - chr7_4:8830518-8830537 None:intergenic 55.0%
GGCCACCAGTATAGCTGTCT+GGG - chr7_4:8830519-8830538 None:intergenic 55.0%
TGGCCACCAGTATAGCTGTC+TGG - chr7_4:8830520-8830539 None:intergenic 55.0%
GCTATACTGGTGGCCATGTC+GGG + chr7_4:8830524-8830543 Msa1138880:CDS 55.0%
GTCGGGACTACTTATGCAGC+TGG + chr7_4:8830541-8830560 Msa1138880:CDS 55.0%
GGGACTACTTATGCAGCTGG+TGG + chr7_4:8830544-8830563 Msa1138880:CDS 55.0%
!! AGCCACCAGGATGACGGAAT+AGG + chr7_4:8830601-8830620 Msa1138880:CDS 55.0%
CTCCTATTCCGTCATCCTGG+TGG - chr7_4:8830606-8830625 None:intergenic 55.0%
! ACAGGCAGGTCCCGAGGTTT+TGG + chr7_4:8829367-8829386 Msa1138880:CDS 60.0%
ATCCTCTGCCCTGCAAGCCA+TGG + chr7_4:8829420-8829439 Msa1138880:CDS 60.0%
! ATCCATGGCTTGCAGGGCAG+AGG - chr7_4:8829425-8829444 None:intergenic 60.0%
! GCTACAGAAAGGGCACGTCC+TGG + chr7_4:8830271-8830290 Msa1138880:CDS 60.0%
AGGGCACGTCCTGGATTTGG+TGG + chr7_4:8830280-8830299 Msa1138880:CDS 60.0%
!! GCACGTCCTGGATTTGGTGG+TGG + chr7_4:8830283-8830302 Msa1138880:CDS 60.0%
!! CGTCCTGGATTTGGTGGTGG+TGG + chr7_4:8830286-8830305 Msa1138880:CDS 60.0%
CCACCACCACCACCAAATCC+AGG - chr7_4:8830292-8830311 None:intergenic 60.0%
!! CCTGGATTTGGTGGTGGTGG+TGG + chr7_4:8830289-8830308 Msa1138880:CDS 60.0%
!! GGTGGTGGTGGTGGTTATGG+TGG + chr7_4:8830298-8830317 Msa1138880:CDS 60.0%
!! GGTGGTGGTGGTTATGGTGG+CGG + chr7_4:8830301-8830320 Msa1138880:CDS 60.0%
!! TATGGTGGCGGTGGCTATGG+TGG + chr7_4:8830391-8830410 Msa1138880:CDS 60.0%
GGTGCCCCAGACAGCTATAC+TGG + chr7_4:8830511-8830530 Msa1138880:CDS 60.0%
GCCCCAGACAGCTATACTGG+TGG + chr7_4:8830514-8830533 Msa1138880:CDS 60.0%
CGTGAAACAGGCAGGTCCCG+AGG + chr7_4:8829361-8829380 Msa1138880:CDS 65.0%
!! GGTGGTGGTTATGGTGGCGG+CGG + chr7_4:8830304-8830323 Msa1138880:CDS 65.0%
!! GGTTATGGTGGCGGCGGCTA+TGG + chr7_4:8830310-8830329 Msa1138880:CDS 65.0%
!! TATGGTGGCGGCGGCTATGG+CGG + chr7_4:8830313-8830332 Msa1138880:CDS 65.0%
!! GGTGGTGGCGGTGGCTATAG+TGG + chr7_4:8830355-8830374 Msa1138880:CDS 65.0%
! GGTGGCGGTGGCTATAGTGG+CGG + chr7_4:8830358-8830377 Msa1138880:CDS 65.0%
GGTGGCTATAGTGGCGGTGG+TGG + chr7_4:8830364-8830383 Msa1138880:CDS 65.0%
!! GGTGGCTATGGTGGTGGTGG+CGG + chr7_4:8830400-8830419 Msa1138880:CDS 65.0%
GGCGGTGGCTATAGTGGCGG+TGG + chr7_4:8830361-8830380 Msa1138880:CDS 70.0%
! GGTGGCGGTGGCTATGGTGG+TGG + chr7_4:8830394-8830413 Msa1138880:CDS 70.0%
!! GGCGGTGGCTATGGTGGTGG+TGG + chr7_4:8830397-8830416 Msa1138880:CDS 70.0%
! GGCGGCTATGGCGGTGGTGG+CGG + chr7_4:8830322-8830341 Msa1138880:CDS 75.0%
!! GGCTATGGCGGTGGTGGCGG+CGG + chr7_4:8830325-8830344 Msa1138880:CDS 75.0%
!! GGTGGTGGCGGCGGCTATGG+CGG + chr7_4:8830334-8830353 Msa1138880:CDS 75.0%
! GGCGGCTATGGCGGTGGTGG+CGG + chr7_4:8830322-8830341 Msa1138880:CDS 75.0%
!! GGCTATGGCGGTGGTGGCGG+TGG + chr7_4:8830325-8830344 Msa1138880:CDS 75.0%
!! GGTGGCGGCGGCTATGGCGG+TGG + chr7_4:8830316-8830335 Msa1138880:CDS 80.0%
! GGCGGCGGCTATGGCGGTGG+TGG + chr7_4:8830319-8830338 Msa1138880:CDS 80.0%
!!! GGCGGTGGTGGCGGCGGCTA+TGG + chr7_4:8830331-8830350 Msa1138880:CDS 80.0%
!! GGTGGCGGCGGCTATGGCGG+TGG + chr7_4:8830316-8830335 Msa1138880:CDS 80.0%
! GGCGGCGGCTATGGCGGTGG+TGG + chr7_4:8830319-8830338 Msa1138880:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 8827059 8830717 8827059 ID=Msa1138880;Name=Msa1138880
chr7_4 mRNA 8827059 8830717 8827059 ID=Msa1138880-mRNA-1;Parent=Msa1138880;Name=Msa1138880-mRNA-1;_AED=0.36;_eAED=0.36;_QI=54|1|0.8|1|0.75|0.6|5|0|263
chr7_4 exon 8827059 8827103 8827059 ID=Msa1138880-mRNA-1:exon:2334;Parent=Msa1138880-mRNA-1
chr7_4 exon 8828280 8828424 8828280 ID=Msa1138880-mRNA-1:exon:2335;Parent=Msa1138880-mRNA-1
chr7_4 exon 8828499 8828567 8828499 ID=Msa1138880-mRNA-1:exon:2336;Parent=Msa1138880-mRNA-1
chr7_4 exon 8829344 8829450 8829344 ID=Msa1138880-mRNA-1:exon:2337;Parent=Msa1138880-mRNA-1
chr7_4 exon 8830238 8830717 8830238 ID=Msa1138880-mRNA-1:exon:2338;Parent=Msa1138880-mRNA-1
chr7_4 five_prime_UTR 8827059 8827103 8827059 ID=Msa1138880-mRNA-1:five_prime_utr;Parent=Msa1138880-mRNA-1
chr7_4 five_prime_UTR 8828280 8828288 8828280 ID=Msa1138880-mRNA-1:five_prime_utr;Parent=Msa1138880-mRNA-1
chr7_4 CDS 8828289 8828424 8828289 ID=Msa1138880-mRNA-1:cds;Parent=Msa1138880-mRNA-1
chr7_4 CDS 8828499 8828567 8828499 ID=Msa1138880-mRNA-1:cds;Parent=Msa1138880-mRNA-1
chr7_4 CDS 8829344 8829450 8829344 ID=Msa1138880-mRNA-1:cds;Parent=Msa1138880-mRNA-1
chr7_4 CDS 8830238 8830717 8830238 ID=Msa1138880-mRNA-1:cds;Parent=Msa1138880-mRNA-1
Gene Sequence

>Msa1138880

ATGGCGTTCTTTGGTAAAATGGGAAAGTTACTCCAGAATTCTGCTGTCAAGCACATCAATCAGGATTTATCTATGTCTACTCCTTCGTTATTTCAAGCAATCAGATCCATGTCATCTGCCAAGCTTTTTATTGGAGGTGTTTCATATAGCACTGATGATAGTAGTCTCCGAGAAGCTTTTTCTCGCTATGGAGAAGTTCTTGATGCAAAGATTATCATGGATCGTGAAACAGGCAGGTCCCGAGGTTTTGGCTTCATAACTTTCGCAACTAGCGAGGAAGCATCCTCTGCCCTGCAAGCCATGGATAACCAGGAACTTCATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGGCACGTCCTGGATTTGGTGGTGGTGGTGGTTATGGTGGCGGCGGCTATGGCGGTGGTGGCGGCGGCTATGGCGGTGGTGGCGGTGGCTATAGTGGCGGTGGTGGAAATTATGGTGGCGGTGGCTATGGTGGTGGTGGCGGAAATTATGGTGGTGGTGGCGGAAATTATGGTGGTGGTGGTACATATGGTCGCAATGATTATAACAGTAGTGGAAGCTATGCAAGTGGTGGTGCCCCAGACAGCTATACTGGTGGCCATGTCGGGACTACTTATGCAGCTGGTGGTGAATTCAGCAGCAACTCTAATTTGGGATATGGTAGCCACCAGGATGACGGAATAGGAGAAGGTAAGAATGAATTCGGTGAGCCGTTAGATAACAACCATGTGCCAGAGAACAATGATCAATCTGATGACTATGCTGAGACCCGTCGGTGA
Protein sequence

>Msa1138880

MAFFGKMGKLLQNSAVKHINQDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDDSSLREAFSRYGEVLDAKIIMDRETGRSRGFGFITFATSEEASSALQAMDNQELHGRTVRVNYATERARPGFGGGGGYGGGGYGGGGGGYGGGGGGYSGGGGNYGGGGYGGGGGNYGGGGGNYGGGGTYGRNDYNSSGSYASGGAPDSYTGGHVGTTYAAGGEFSSNSNLGYGSHQDDGIGEGKNEFGEPLDNNHVPENNDQSDDYAETRR*