AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1213480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1213480 MtrunA17_Chr4g0061981 97.452 157 0 1 1 157 1 153 9.98e-107 301
Msa1213480 MtrunA17_Chr4g0063571 34.483 116 75 1 21 136 4 118 1.69e-14 66.2
Msa1213480 MtrunA17_Chr2g0307081 34.821 112 72 1 25 136 8 118 1.63e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1213480 AT5G08180.2 68.153 157 49 1 1 157 1 156 5.11e-76 224
Msa1213480 AT5G08180.1 68.153 157 49 1 1 157 1 156 5.11e-76 224
Msa1213480 AT4G12600.1 34.188 117 76 1 20 136 3 118 5.30e-13 62.4
Msa1213480 AT5G20160.1 35.714 112 71 1 25 136 8 118 5.41e-13 62.4
Msa1213480 AT4G22380.1 34.821 112 72 1 25 136 8 118 9.29e-13 62.0

Find 42 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGAAAGATTTGGGAATT+AGG 0.181028 8_1:+73637421 None:intergenic
GCTACAATGGATTAACATAT+TGG 0.284643 8_1:-73635259 Msa1213480:three_prime_UTR
AGTATAAGGCGAGGTCAAAA+AGG 0.296737 8_1:-73636458 Msa1213480:CDS
GTTGAAAGATTTGGGAATTA+GGG 0.328456 8_1:+73637422 None:intergenic
CCCATTGCAAAACCTCTTGC+TGG 0.348880 8_1:-73637308 Msa1213480:CDS
GTGTGCTTCGTTGAAAGATT+TGG 0.349892 8_1:+73637413 None:intergenic
TGAGATAGTTCACCCTTTGA+AGG 0.372203 8_1:+73635392 None:intergenic
GAAGCACACGCAGAGAGAAA+TGG 0.380604 8_1:-73637399 Msa1213480:exon
TGTGCTTCGTTGAAAGATTT+GGG 0.380697 8_1:+73637414 None:intergenic
CGCAGAGTGTGTATTATAGC+TGG 0.392404 8_1:-73636245 Msa1213480:intron
AGGAGGTGGTTAAAAGTATA+AGG 0.394940 8_1:-73636472 Msa1213480:CDS
GTGCATAAAGAGAGGAGTTA+AGG 0.402782 8_1:-73636492 Msa1213480:CDS
TAGTTCACCCTTTGAAGGCT+TGG 0.444404 8_1:+73635397 None:intergenic
AAGCACACGCAGAGAGAAAT+GGG 0.445147 8_1:-73637398 Msa1213480:exon
ACATGAGTGATGACATCAAT+AGG 0.449731 8_1:+73636212 None:intergenic
TCCTTATCCTCACATAAAAT+CGG 0.452854 8_1:+73636188 None:intergenic
TTAGATGAGACATATACATA+TGG 0.460404 8_1:+73636161 None:intergenic
GTCCAGGACCTTGCAACGGC+AGG 0.468819 8_1:-73635458 Msa1213480:intron
CGACAGTGAAGGTGAGAAAT+CGG 0.483487 8_1:-73637372 Msa1213480:CDS
GTGATGACCAAGCCTTCAAA+GGG 0.500756 8_1:-73635404 Msa1213480:CDS
TCGTTGCTCCTGCCGTTGCA+AGG 0.501816 8_1:+73635450 None:intergenic
AGTGATGACCAAGCCTTCAA+AGG 0.525648 8_1:-73635405 Msa1213480:CDS
ACACTCAAGCTTGTTAAAAG+AGG 0.527156 8_1:-73637266 Msa1213480:intron
AAAGAGAGGAGTTAAGGAGG+TGG 0.543156 8_1:-73636486 Msa1213480:CDS
CGGTGCAGAGGGAGAAGGAG+AGG 0.549279 8_1:-73637352 Msa1213480:CDS
CATAAAGAGAGGAGTTAAGG+AGG 0.557458 8_1:-73636489 Msa1213480:CDS
GAAAGCTTCTTTCCAGCAAG+AGG 0.560382 8_1:+73637296 None:intergenic
ATCACTAAAACACAACAAGT+TGG 0.561953 8_1:+73635422 None:intergenic
GAAGGAGAGGAAGAAGATGC+AGG 0.571568 8_1:-73637339 Msa1213480:CDS
GAAATCGGTGCAGAGGGAGA+AGG 0.585599 8_1:-73637357 Msa1213480:CDS
AAGGTGAGAAATCGGTGCAG+AGG 0.589190 8_1:-73637364 Msa1213480:CDS
GCAGAGTGTGTATTATAGCT+GGG 0.592201 8_1:-73636244 Msa1213480:intron
AGGTGAGAAATCGGTGCAGA+GGG 0.594395 8_1:-73637363 Msa1213480:CDS
TCTGAGCAATAATGTGGGTA+GGG 0.614916 8_1:-73635127 Msa1213480:three_prime_UTR
TTTGTGTCTGAGCAATAATG+TGG 0.615704 8_1:-73635133 Msa1213480:three_prime_UTR
AAAGGGTGAACTATCTCAAG+AGG 0.620179 8_1:-73635387 Msa1213480:CDS
GAAAACAAGTGCATAAAGAG+AGG 0.625540 8_1:-73636500 Msa1213480:CDS
ATTTGTCCAGGACCTTGCAA+CGG 0.636321 8_1:-73635462 Msa1213480:intron
GTCTGAGCAATAATGTGGGT+AGG 0.653159 8_1:-73635128 Msa1213480:three_prime_UTR
GAAATGGGAAGCGACAGTGA+AGG 0.681973 8_1:-73637383 Msa1213480:CDS
GTGGTTAAAAGTATAAGGCG+AGG 0.693539 8_1:-73636467 Msa1213480:CDS
TTGTGTCTGAGCAATAATGT+GGG 0.722883 8_1:-73635132 Msa1213480:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGCTATAAACTATAT+TGG - chr8_1:73635647-73635666 Msa1213480:intron 15.0%
!! TTCCAAAAAAAAAGAAAAAA+CGG + chr8_1:73635888-73635907 None:intergenic 15.0%
!!! TTTTTTCTTTTTTTTTGGAA+TGG - chr8_1:73635888-73635907 Msa1213480:intron 15.0%
!! ACAATTGAAACATAAAAAAT+GGG + chr8_1:73636234-73636253 None:intergenic 15.0%
!! TTATAAGCTATAAACTATAT+TGG - chr8_1:73635647-73635666 Msa1213480:intron 15.0%
!! TTCCAAAAAAAAAGAAAAAA+CGG + chr8_1:73635888-73635907 None:intergenic 15.0%
!!! TTTTTTCTTTTTTTTTGGAA+TGG - chr8_1:73635888-73635907 Msa1213480:intron 15.0%
!! ACAATTGAAACATAAAAAAT+GGG + chr8_1:73636234-73636253 None:intergenic 15.0%
!!! TAATGAAAATCGTTAATTTG+TGG - chr8_1:73635334-73635353 Msa1213480:CDS 20.0%
!! ATAGCTTATAAAAACAACTT+AGG + chr8_1:73635638-73635657 None:intergenic 20.0%
!! ATTCATAACATAACATTCTT+GGG + chr8_1:73635800-73635819 None:intergenic 20.0%
!!! GTTGATTCTGTAATTTAAAA+AGG - chr8_1:73635924-73635943 Msa1213480:intron 20.0%
!! TTACATAAATCTTTGTCTTA+TGG - chr8_1:73635981-73636000 Msa1213480:intron 20.0%
!! TACATAAATCTTTGTCTTAT+GGG - chr8_1:73635982-73636001 Msa1213480:intron 20.0%
!! CACAATTGAAACATAAAAAA+TGG + chr8_1:73636235-73636254 None:intergenic 20.0%
!!! CATTTTTTATGTTTCAATTG+TGG - chr8_1:73636233-73636252 Msa1213480:CDS 20.0%
!! TCATAAATAACTAAAAGTTG+AGG - chr8_1:73636553-73636572 Msa1213480:intron 20.0%
!! TTCCATTCAAATATGTTATA+TGG + chr8_1:73636677-73636696 None:intergenic 20.0%
!! CTATTGTATTCATAATATAC+AGG + chr8_1:73636817-73636836 None:intergenic 20.0%
!! GAATTGTTGATATATTATGT+AGG + chr8_1:73636889-73636908 None:intergenic 20.0%
!!! TTTCAGTTTCGTTTTAAATA+TGG - chr8_1:73636921-73636940 Msa1213480:intron 20.0%
!!! AAATGTATTTGTACTGTTTT+TGG - chr8_1:73637259-73637278 Msa1213480:intron 20.0%
!!! TAATGAAAATCGTTAATTTG+TGG - chr8_1:73635334-73635353 Msa1213480:CDS 20.0%
!! ATAGCTTATAAAAACAACTT+AGG + chr8_1:73635638-73635657 None:intergenic 20.0%
!! ATTCATAACATAACATTCTT+GGG + chr8_1:73635800-73635819 None:intergenic 20.0%
!!! GTTGATTCTGTAATTTAAAA+AGG - chr8_1:73635924-73635943 Msa1213480:intron 20.0%
!! TTACATAAATCTTTGTCTTA+TGG - chr8_1:73635981-73636000 Msa1213480:intron 20.0%
!! TACATAAATCTTTGTCTTAT+GGG - chr8_1:73635982-73636001 Msa1213480:intron 20.0%
!! CACAATTGAAACATAAAAAA+TGG + chr8_1:73636235-73636254 None:intergenic 20.0%
!!! CATTTTTTATGTTTCAATTG+TGG - chr8_1:73636233-73636252 Msa1213480:CDS 20.0%
!! TCATAAATAACTAAAAGTTG+AGG - chr8_1:73636553-73636572 Msa1213480:intron 20.0%
!! TTCCATTCAAATATGTTATA+TGG + chr8_1:73636677-73636696 None:intergenic 20.0%
!! CTATTGTATTCATAATATAC+AGG + chr8_1:73636817-73636836 None:intergenic 20.0%
!! GAATTGTTGATATATTATGT+AGG + chr8_1:73636889-73636908 None:intergenic 20.0%
!!! TTTCAGTTTCGTTTTAAATA+TGG - chr8_1:73636921-73636940 Msa1213480:intron 20.0%
!!! AAATGTATTTGTACTGTTTT+TGG - chr8_1:73637259-73637278 Msa1213480:intron 20.0%
!!! CTTCAAAAATGAACTTGTTA+TGG - chr8_1:73635479-73635498 Msa1213480:intron 25.0%
!!! ATGAACTTGTTATGGAATTA+AGG - chr8_1:73635487-73635506 Msa1213480:intron 25.0%
!!! TGAACTTGTTATGGAATTAA+GGG - chr8_1:73635488-73635507 Msa1213480:intron 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr8_1:73635514-73635533 None:intergenic 25.0%
!! TACATTTTGTAAGTCTGTTT+TGG + chr8_1:73635738-73635757 None:intergenic 25.0%
! TTCATAACATAACATTCTTG+GGG + chr8_1:73635799-73635818 None:intergenic 25.0%
! GATTCATAACATAACATTCT+TGG + chr8_1:73635801-73635820 None:intergenic 25.0%
!!! TGCCGTTTTTTCTTTTTTTT+TGG - chr8_1:73635883-73635902 Msa1213480:intron 25.0%
! ATTTATCTTCCTTGACAAAA+TGG - chr8_1:73636181-73636200 Msa1213480:CDS 25.0%
! TTAGATGAGACATATACATA+TGG + chr8_1:73636382-73636401 None:intergenic 25.0%
!! CTTATTCTAAAGAGAGATTA+GGG + chr8_1:73636479-73636498 None:intergenic 25.0%
!! TCTTATTCTAAAGAGAGATT+AGG + chr8_1:73636480-73636499 None:intergenic 25.0%
! GTCCATATAACATATTTGAA+TGG - chr8_1:73636672-73636691 Msa1213480:intron 25.0%
! ATATGGTATTAAGAGAAACA+TGG - chr8_1:73636938-73636957 Msa1213480:intron 25.0%
!! TTTCAAAGTACTAGAGTAAT+TGG + chr8_1:73637034-73637053 None:intergenic 25.0%
!!! AATTTTTGAGATATTTGTCC+AGG - chr8_1:73637066-73637085 Msa1213480:intron 25.0%
!!! CTTCAAAAATGAACTTGTTA+TGG - chr8_1:73635479-73635498 Msa1213480:intron 25.0%
!!! ATGAACTTGTTATGGAATTA+AGG - chr8_1:73635487-73635506 Msa1213480:intron 25.0%
!!! TGAACTTGTTATGGAATTAA+GGG - chr8_1:73635488-73635507 Msa1213480:intron 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr8_1:73635514-73635533 None:intergenic 25.0%
!! TACATTTTGTAAGTCTGTTT+TGG + chr8_1:73635738-73635757 None:intergenic 25.0%
! TTCATAACATAACATTCTTG+GGG + chr8_1:73635799-73635818 None:intergenic 25.0%
! GATTCATAACATAACATTCT+TGG + chr8_1:73635801-73635820 None:intergenic 25.0%
!!! TGCCGTTTTTTCTTTTTTTT+TGG - chr8_1:73635883-73635902 Msa1213480:intron 25.0%
! ATTTATCTTCCTTGACAAAA+TGG - chr8_1:73636181-73636200 Msa1213480:CDS 25.0%
! TTAGATGAGACATATACATA+TGG + chr8_1:73636382-73636401 None:intergenic 25.0%
!! CTTATTCTAAAGAGAGATTA+GGG + chr8_1:73636479-73636498 None:intergenic 25.0%
!! TCTTATTCTAAAGAGAGATT+AGG + chr8_1:73636480-73636499 None:intergenic 25.0%
! GTCCATATAACATATTTGAA+TGG - chr8_1:73636672-73636691 Msa1213480:intron 25.0%
! ATATGGTATTAAGAGAAACA+TGG - chr8_1:73636938-73636957 Msa1213480:intron 25.0%
!! TTTCAAAGTACTAGAGTAAT+TGG + chr8_1:73637034-73637053 None:intergenic 25.0%
!!! AATTTTTGAGATATTTGTCC+AGG - chr8_1:73637066-73637085 Msa1213480:intron 25.0%
GTTGAAAGATTTGGGAATTA+GGG + chr8_1:73635121-73635140 None:intergenic 30.0%
ATGGTAAAAAGACAGCAAAA+AGG + chr8_1:73635853-73635872 None:intergenic 30.0%
! GCTTGAATGTTTTGTCAATT+TGG - chr8_1:73635957-73635976 Msa1213480:intron 30.0%
TAACATTAGATTGCTCACAA+AGG - chr8_1:73636118-73636137 Msa1213480:intron 30.0%
AACATTAGATTGCTCACAAA+GGG - chr8_1:73636119-73636138 Msa1213480:intron 30.0%
GAGAAGAAGGCAAAAAATAA+GGG + chr8_1:73636273-73636292 None:intergenic 30.0%
TGAGAAGAAGGCAAAAAATA+AGG + chr8_1:73636274-73636293 None:intergenic 30.0%
TCCTTATCCTCACATAAAAT+CGG + chr8_1:73636355-73636374 None:intergenic 30.0%
TATGACATCAAATTAACCTC+AGG + chr8_1:73636538-73636557 None:intergenic 30.0%
ACAATTTGTGTTATGAATGC+CGG + chr8_1:73636637-73636656 None:intergenic 30.0%
! ATAACACAAATTGTGTTGAC+AGG - chr8_1:73636643-73636662 Msa1213480:intron 30.0%
! GAATGTATGCTTTTCTATAC+TGG - chr8_1:73636694-73636713 Msa1213480:intron 30.0%
AAATCTGCTATGCAATCATT+TGG - chr8_1:73636984-73637003 Msa1213480:intron 30.0%
ATCACTAAAACACAACAAGT+TGG + chr8_1:73637121-73637140 None:intergenic 30.0%
!! GCTACAATGGATTAACATAT+TGG - chr8_1:73637281-73637300 Msa1213480:CDS 30.0%
!! CTTGCAATCATTTTGATCTA+TGG - chr8_1:73637312-73637331 Msa1213480:CDS 30.0%
GTTGAAAGATTTGGGAATTA+GGG + chr8_1:73635121-73635140 None:intergenic 30.0%
ATGGTAAAAAGACAGCAAAA+AGG + chr8_1:73635853-73635872 None:intergenic 30.0%
! GCTTGAATGTTTTGTCAATT+TGG - chr8_1:73635957-73635976 Msa1213480:intron 30.0%
TAACATTAGATTGCTCACAA+AGG - chr8_1:73636118-73636137 Msa1213480:intron 30.0%
AACATTAGATTGCTCACAAA+GGG - chr8_1:73636119-73636138 Msa1213480:intron 30.0%
GAGAAGAAGGCAAAAAATAA+GGG + chr8_1:73636273-73636292 None:intergenic 30.0%
TGAGAAGAAGGCAAAAAATA+AGG + chr8_1:73636274-73636293 None:intergenic 30.0%
TCCTTATCCTCACATAAAAT+CGG + chr8_1:73636355-73636374 None:intergenic 30.0%
TATGACATCAAATTAACCTC+AGG + chr8_1:73636538-73636557 None:intergenic 30.0%
ACAATTTGTGTTATGAATGC+CGG + chr8_1:73636637-73636656 None:intergenic 30.0%
! ATAACACAAATTGTGTTGAC+AGG - chr8_1:73636643-73636662 Msa1213480:intron 30.0%
! GAATGTATGCTTTTCTATAC+TGG - chr8_1:73636694-73636713 Msa1213480:intron 30.0%
AAATCTGCTATGCAATCATT+TGG - chr8_1:73636984-73637003 Msa1213480:intron 30.0%
ATCACTAAAACACAACAAGT+TGG + chr8_1:73637121-73637140 None:intergenic 30.0%
!! GCTACAATGGATTAACATAT+TGG - chr8_1:73637281-73637300 Msa1213480:CDS 30.0%
!! CTTGCAATCATTTTGATCTA+TGG - chr8_1:73637312-73637331 Msa1213480:CDS 30.0%
CGTTGAAAGATTTGGGAATT+AGG + chr8_1:73635122-73635141 None:intergenic 35.0%
TGTGCTTCGTTGAAAGATTT+GGG + chr8_1:73635129-73635148 None:intergenic 35.0%
! AACAAGCTTGAGTGTTTTCT+TGG + chr8_1:73635269-73635288 None:intergenic 35.0%
!! ACACTCAAGCTTGTTAAAAG+AGG - chr8_1:73635274-73635293 Msa1213480:three_prime_UTR 35.0%
GGAGAGTTCTTGAAAATAAG+TGG - chr8_1:73635668-73635687 Msa1213480:intron 35.0%
TGAAATAAGCCAATCCAAAC+TGG - chr8_1:73635773-73635792 Msa1213480:intron 35.0%
AAAACGGCAGCAAATTTGTA+TGG + chr8_1:73635872-73635891 None:intergenic 35.0%
GAAAACAAGTGCATAAAGAG+AGG - chr8_1:73636040-73636059 Msa1213480:intron 35.0%
! AGGAGGTGGTTAAAAGTATA+AGG - chr8_1:73636068-73636087 Msa1213480:intron 35.0%
! CTTGAGTAACCATTTTGTCA+AGG + chr8_1:73636193-73636212 None:intergenic 35.0%
CTTGACAAAATGGTTACTCA+AGG - chr8_1:73636191-73636210 Msa1213480:CDS 35.0%
ACATGAGTGATGACATCAAT+AGG + chr8_1:73636331-73636350 None:intergenic 35.0%
! TCATGTTCCGATTTTATGTG+AGG - chr8_1:73636345-73636364 Msa1213480:intron 35.0%
! TCCGATTTTATGTGAGGATA+AGG - chr8_1:73636351-73636370 Msa1213480:intron 35.0%
TAAAGAGAGATTAGGGAAAC+AGG + chr8_1:73636472-73636491 None:intergenic 35.0%
TTTCTTACACATATAGCCTG+AGG - chr8_1:73636519-73636538 Msa1213480:intron 35.0%
AGCACTCAAGTTACAAAACA+AGG + chr8_1:73636604-73636623 None:intergenic 35.0%
TCTATGAGCTGGATTATAGA+TGG + chr8_1:73636794-73636813 None:intergenic 35.0%
TAATATACAGGTCTATGAGC+TGG + chr8_1:73636805-73636824 None:intergenic 35.0%
CACAGTTTATCGAGAAAGAA+AGG - chr8_1:73636843-73636862 Msa1213480:intron 35.0%
!!! TGTACTGTTTTTGGCTACAA+TGG - chr8_1:73637268-73637287 Msa1213480:CDS 35.0%
TTTGTGTCTGAGCAATAATG+TGG - chr8_1:73637407-73637426 Msa1213480:five_prime_UTR 35.0%
TTGTGTCTGAGCAATAATGT+GGG - chr8_1:73637408-73637427 Msa1213480:five_prime_UTR 35.0%
CGTTGAAAGATTTGGGAATT+AGG + chr8_1:73635122-73635141 None:intergenic 35.0%
TGTGCTTCGTTGAAAGATTT+GGG + chr8_1:73635129-73635148 None:intergenic 35.0%
! AACAAGCTTGAGTGTTTTCT+TGG + chr8_1:73635269-73635288 None:intergenic 35.0%
!! ACACTCAAGCTTGTTAAAAG+AGG - chr8_1:73635274-73635293 Msa1213480:three_prime_UTR 35.0%
GGAGAGTTCTTGAAAATAAG+TGG - chr8_1:73635668-73635687 Msa1213480:intron 35.0%
TGAAATAAGCCAATCCAAAC+TGG - chr8_1:73635773-73635792 Msa1213480:intron 35.0%
AAAACGGCAGCAAATTTGTA+TGG + chr8_1:73635872-73635891 None:intergenic 35.0%
GAAAACAAGTGCATAAAGAG+AGG - chr8_1:73636040-73636059 Msa1213480:intron 35.0%
! AGGAGGTGGTTAAAAGTATA+AGG - chr8_1:73636068-73636087 Msa1213480:intron 35.0%
! CTTGAGTAACCATTTTGTCA+AGG + chr8_1:73636193-73636212 None:intergenic 35.0%
CTTGACAAAATGGTTACTCA+AGG - chr8_1:73636191-73636210 Msa1213480:CDS 35.0%
ACATGAGTGATGACATCAAT+AGG + chr8_1:73636331-73636350 None:intergenic 35.0%
! TCATGTTCCGATTTTATGTG+AGG - chr8_1:73636345-73636364 Msa1213480:intron 35.0%
! TCCGATTTTATGTGAGGATA+AGG - chr8_1:73636351-73636370 Msa1213480:intron 35.0%
TAAAGAGAGATTAGGGAAAC+AGG + chr8_1:73636472-73636491 None:intergenic 35.0%
TTTCTTACACATATAGCCTG+AGG - chr8_1:73636519-73636538 Msa1213480:intron 35.0%
AGCACTCAAGTTACAAAACA+AGG + chr8_1:73636604-73636623 None:intergenic 35.0%
TCTATGAGCTGGATTATAGA+TGG + chr8_1:73636794-73636813 None:intergenic 35.0%
TAATATACAGGTCTATGAGC+TGG + chr8_1:73636805-73636824 None:intergenic 35.0%
CACAGTTTATCGAGAAAGAA+AGG - chr8_1:73636843-73636862 Msa1213480:intron 35.0%
!!! TGTACTGTTTTTGGCTACAA+TGG - chr8_1:73637268-73637287 Msa1213480:CDS 35.0%
TTTGTGTCTGAGCAATAATG+TGG - chr8_1:73637407-73637426 Msa1213480:five_prime_UTR 35.0%
TTGTGTCTGAGCAATAATGT+GGG - chr8_1:73637408-73637427 Msa1213480:five_prime_UTR 35.0%
GTGTGCTTCGTTGAAAGATT+TGG + chr8_1:73635130-73635149 None:intergenic 40.0%
! TCTAAGCATTGCAGTGTTTC+TGG - chr8_1:73635359-73635378 Msa1213480:CDS 40.0%
! CTAAGCATTGCAGTGTTTCT+GGG - chr8_1:73635360-73635379 Msa1213480:CDS 40.0%
!!! TTGCAGTGTTTCTGGGTTTT+TGG - chr8_1:73635367-73635386 Msa1213480:CDS 40.0%
TATGGAATTAAGGGCCTGTT+TGG - chr8_1:73635497-73635516 Msa1213480:intron 40.0%
GCTTATTTCAGCTGATCTAC+TGG + chr8_1:73635763-73635782 None:intergenic 40.0%
GTGCATAAAGAGAGGAGTTA+AGG - chr8_1:73636048-73636067 Msa1213480:intron 40.0%
CATAAAGAGAGGAGTTAAGG+AGG - chr8_1:73636051-73636070 Msa1213480:intron 40.0%
! GTGGTTAAAAGTATAAGGCG+AGG - chr8_1:73636073-73636092 Msa1213480:intron 40.0%
AGTATAAGGCGAGGTCAAAA+AGG - chr8_1:73636082-73636101 Msa1213480:intron 40.0%
GTATAAGGCGAGGTCAAAAA+GGG - chr8_1:73636083-73636102 Msa1213480:intron 40.0%
GCAGAGTGTGTATTATAGCT+GGG - chr8_1:73636296-73636315 Msa1213480:intron 40.0%
ATCAAGATTCAGCGCAAAGT+TGG + chr8_1:73636417-73636436 None:intergenic 40.0%
AACTTTGCGCTGAATCTTGA+TGG - chr8_1:73636416-73636435 Msa1213480:intron 40.0%
AAGGTGCAACATCATCAATG+AGG + chr8_1:73636585-73636604 None:intergenic 40.0%
! TTGAGTGCTTTTCCTTATGC+CGG - chr8_1:73636615-73636634 Msa1213480:intron 40.0%
TGAGATAGTTCACCCTTTGA+AGG + chr8_1:73637151-73637170 None:intergenic 40.0%
AAAGGGTGAACTATCTCAAG+AGG - chr8_1:73637153-73637172 Msa1213480:intron 40.0%
TCTGAGCAATAATGTGGGTA+GGG - chr8_1:73637413-73637432 Msa1213480:five_prime_UTR 40.0%
GTGTGCTTCGTTGAAAGATT+TGG + chr8_1:73635130-73635149 None:intergenic 40.0%
! TCTAAGCATTGCAGTGTTTC+TGG - chr8_1:73635359-73635378 Msa1213480:CDS 40.0%
! CTAAGCATTGCAGTGTTTCT+GGG - chr8_1:73635360-73635379 Msa1213480:CDS 40.0%
!!! TTGCAGTGTTTCTGGGTTTT+TGG - chr8_1:73635367-73635386 Msa1213480:CDS 40.0%
TATGGAATTAAGGGCCTGTT+TGG - chr8_1:73635497-73635516 Msa1213480:intron 40.0%
GCTTATTTCAGCTGATCTAC+TGG + chr8_1:73635763-73635782 None:intergenic 40.0%
GTGCATAAAGAGAGGAGTTA+AGG - chr8_1:73636048-73636067 Msa1213480:intron 40.0%
CATAAAGAGAGGAGTTAAGG+AGG - chr8_1:73636051-73636070 Msa1213480:intron 40.0%
! GTGGTTAAAAGTATAAGGCG+AGG - chr8_1:73636073-73636092 Msa1213480:intron 40.0%
AGTATAAGGCGAGGTCAAAA+AGG - chr8_1:73636082-73636101 Msa1213480:intron 40.0%
GTATAAGGCGAGGTCAAAAA+GGG - chr8_1:73636083-73636102 Msa1213480:intron 40.0%
GCAGAGTGTGTATTATAGCT+GGG - chr8_1:73636296-73636315 Msa1213480:intron 40.0%
ATCAAGATTCAGCGCAAAGT+TGG + chr8_1:73636417-73636436 None:intergenic 40.0%
AACTTTGCGCTGAATCTTGA+TGG - chr8_1:73636416-73636435 Msa1213480:intron 40.0%
AAGGTGCAACATCATCAATG+AGG + chr8_1:73636585-73636604 None:intergenic 40.0%
! TTGAGTGCTTTTCCTTATGC+CGG - chr8_1:73636615-73636634 Msa1213480:intron 40.0%
TGAGATAGTTCACCCTTTGA+AGG + chr8_1:73637151-73637170 None:intergenic 40.0%
AAAGGGTGAACTATCTCAAG+AGG - chr8_1:73637153-73637172 Msa1213480:intron 40.0%
TCTGAGCAATAATGTGGGTA+GGG - chr8_1:73637413-73637432 Msa1213480:five_prime_UTR 40.0%
AAGCACACGCAGAGAGAAAT+GGG - chr8_1:73635142-73635161 Msa1213480:three_prime_UTR 45.0%
CGACAGTGAAGGTGAGAAAT+CGG - chr8_1:73635168-73635187 Msa1213480:three_prime_UTR 45.0%
! AGCAAGAGGTTTTGCAATGG+GGG + chr8_1:73635233-73635252 None:intergenic 45.0%
! CAGCAAGAGGTTTTGCAATG+GGG + chr8_1:73635234-73635253 None:intergenic 45.0%
! CCAGCAAGAGGTTTTGCAAT+GGG + chr8_1:73635235-73635254 None:intergenic 45.0%
! TCCAGCAAGAGGTTTTGCAA+TGG + chr8_1:73635236-73635255 None:intergenic 45.0%
GAAAGCTTCTTTCCAGCAAG+AGG + chr8_1:73635247-73635266 None:intergenic 45.0%
TAACATTCTTGGGGCCAGTT+TGG + chr8_1:73635790-73635809 None:intergenic 45.0%
AAAGAGAGGAGTTAAGGAGG+TGG - chr8_1:73636054-73636073 Msa1213480:intron 45.0%
CGCAGAGTGTGTATTATAGC+TGG - chr8_1:73636295-73636314 Msa1213480:intron 45.0%
AGAGAGATTAGGGAAACAGG+CGG + chr8_1:73636469-73636488 None:intergenic 45.0%
GTGTTATGAATGCCGGCATA+AGG + chr8_1:73636630-73636649 None:intergenic 45.0%
ATTTGTCCAGGACCTTGCAA+CGG - chr8_1:73637078-73637097 Msa1213480:intron 45.0%
AGTGATGACCAAGCCTTCAA+AGG - chr8_1:73637135-73637154 Msa1213480:intron 45.0%
GTGATGACCAAGCCTTCAAA+GGG - chr8_1:73637136-73637155 Msa1213480:intron 45.0%
! TAGTTCACCCTTTGAAGGCT+TGG + chr8_1:73637146-73637165 None:intergenic 45.0%
GTCTGAGCAATAATGTGGGT+AGG - chr8_1:73637412-73637431 Msa1213480:five_prime_UTR 45.0%
AAGCACACGCAGAGAGAAAT+GGG - chr8_1:73635142-73635161 Msa1213480:three_prime_UTR 45.0%
CGACAGTGAAGGTGAGAAAT+CGG - chr8_1:73635168-73635187 Msa1213480:three_prime_UTR 45.0%
! AGCAAGAGGTTTTGCAATGG+GGG + chr8_1:73635233-73635252 None:intergenic 45.0%
! CAGCAAGAGGTTTTGCAATG+GGG + chr8_1:73635234-73635253 None:intergenic 45.0%
! CCAGCAAGAGGTTTTGCAAT+GGG + chr8_1:73635235-73635254 None:intergenic 45.0%
! TCCAGCAAGAGGTTTTGCAA+TGG + chr8_1:73635236-73635255 None:intergenic 45.0%
GAAAGCTTCTTTCCAGCAAG+AGG + chr8_1:73635247-73635266 None:intergenic 45.0%
TAACATTCTTGGGGCCAGTT+TGG + chr8_1:73635790-73635809 None:intergenic 45.0%
AAAGAGAGGAGTTAAGGAGG+TGG - chr8_1:73636054-73636073 Msa1213480:intron 45.0%
CGCAGAGTGTGTATTATAGC+TGG - chr8_1:73636295-73636314 Msa1213480:intron 45.0%
AGAGAGATTAGGGAAACAGG+CGG + chr8_1:73636469-73636488 None:intergenic 45.0%
GTGTTATGAATGCCGGCATA+AGG + chr8_1:73636630-73636649 None:intergenic 45.0%
ATTTGTCCAGGACCTTGCAA+CGG - chr8_1:73637078-73637097 Msa1213480:intron 45.0%
AGTGATGACCAAGCCTTCAA+AGG - chr8_1:73637135-73637154 Msa1213480:intron 45.0%
GTGATGACCAAGCCTTCAAA+GGG - chr8_1:73637136-73637155 Msa1213480:intron 45.0%
! TAGTTCACCCTTTGAAGGCT+TGG + chr8_1:73637146-73637165 None:intergenic 45.0%
GTCTGAGCAATAATGTGGGT+AGG - chr8_1:73637412-73637431 Msa1213480:five_prime_UTR 45.0%
GAAGCACACGCAGAGAGAAA+TGG - chr8_1:73635141-73635160 Msa1213480:three_prime_UTR 50.0%
GAAATGGGAAGCGACAGTGA+AGG - chr8_1:73635157-73635176 Msa1213480:three_prime_UTR 50.0%
AAGGTGAGAAATCGGTGCAG+AGG - chr8_1:73635176-73635195 Msa1213480:three_prime_UTR 50.0%
AGGTGAGAAATCGGTGCAGA+GGG - chr8_1:73635177-73635196 Msa1213480:three_prime_UTR 50.0%
GAAGGAGAGGAAGAAGATGC+AGG - chr8_1:73635201-73635220 Msa1213480:three_prime_UTR 50.0%
CCCATTGCAAAACCTCTTGC+TGG - chr8_1:73635232-73635251 Msa1213480:three_prime_UTR 50.0%
TTCTTGGGGCCAGTTTGGAT+TGG + chr8_1:73635785-73635804 None:intergenic 50.0%
CACACTCTGCGTTGAGAAGA+AGG + chr8_1:73636286-73636305 None:intergenic 50.0%
GAAGCACACGCAGAGAGAAA+TGG - chr8_1:73635141-73635160 Msa1213480:three_prime_UTR 50.0%
GAAATGGGAAGCGACAGTGA+AGG - chr8_1:73635157-73635176 Msa1213480:three_prime_UTR 50.0%
AAGGTGAGAAATCGGTGCAG+AGG - chr8_1:73635176-73635195 Msa1213480:three_prime_UTR 50.0%
AGGTGAGAAATCGGTGCAGA+GGG - chr8_1:73635177-73635196 Msa1213480:three_prime_UTR 50.0%
GAAGGAGAGGAAGAAGATGC+AGG - chr8_1:73635201-73635220 Msa1213480:three_prime_UTR 50.0%
CCCATTGCAAAACCTCTTGC+TGG - chr8_1:73635232-73635251 Msa1213480:three_prime_UTR 50.0%
TTCTTGGGGCCAGTTTGGAT+TGG + chr8_1:73635785-73635804 None:intergenic 50.0%
CACACTCTGCGTTGAGAAGA+AGG + chr8_1:73636286-73636305 None:intergenic 50.0%
GAAATCGGTGCAGAGGGAGA+AGG - chr8_1:73635183-73635202 Msa1213480:three_prime_UTR 55.0%
GAAATCGGTGCAGAGGGAGA+AGG - chr8_1:73635183-73635202 Msa1213480:three_prime_UTR 55.0%
TCGTTGCTCCTGCCGTTGCA+AGG + chr8_1:73637093-73637112 None:intergenic 60.0%
TCGTTGCTCCTGCCGTTGCA+AGG + chr8_1:73637093-73637112 None:intergenic 60.0%
CGGTGCAGAGGGAGAAGGAG+AGG - chr8_1:73635188-73635207 Msa1213480:three_prime_UTR 65.0%
GTCCAGGACCTTGCAACGGC+AGG - chr8_1:73637082-73637101 Msa1213480:intron 65.0%
CTCCTGCCGTTGCAAGGTCC+TGG + chr8_1:73637087-73637106 None:intergenic 65.0%
CGGTGCAGAGGGAGAAGGAG+AGG - chr8_1:73635188-73635207 Msa1213480:three_prime_UTR 65.0%
GTCCAGGACCTTGCAACGGC+AGG - chr8_1:73637082-73637101 Msa1213480:intron 65.0%
CTCCTGCCGTTGCAAGGTCC+TGG + chr8_1:73637087-73637106 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 73635112 73637450 73635112 ID=Msa1213480;Name=Msa1213480
chr8_1 mRNA 73635112 73637450 73635112 ID=Msa1213480-mRNA-1;Parent=Msa1213480;Name=Msa1213480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=48|1|1|1|1|1|4|201|157
chr8_1 exon 73635112 73635474 73635112 ID=Msa1213480-mRNA-1:exon:25121;Parent=Msa1213480-mRNA-1
chr8_1 exon 73636157 73636262 73636157 ID=Msa1213480-mRNA-1:exon:25120;Parent=Msa1213480-mRNA-1
chr8_1 exon 73636458 73636527 73636458 ID=Msa1213480-mRNA-1:exon:25119;Parent=Msa1213480-mRNA-1
chr8_1 exon 73637267 73637450 73637267 ID=Msa1213480-mRNA-1:exon:25118;Parent=Msa1213480-mRNA-1
chr8_1 five_prime_UTR 73637403 73637450 73637403 ID=Msa1213480-mRNA-1:five_prime_utr;Parent=Msa1213480-mRNA-1
chr8_1 CDS 73637267 73637402 73637267 ID=Msa1213480-mRNA-1:cds;Parent=Msa1213480-mRNA-1
chr8_1 CDS 73636458 73636527 73636458 ID=Msa1213480-mRNA-1:cds;Parent=Msa1213480-mRNA-1
chr8_1 CDS 73636157 73636262 73636157 ID=Msa1213480-mRNA-1:cds;Parent=Msa1213480-mRNA-1
chr8_1 CDS 73635313 73635474 73635313 ID=Msa1213480-mRNA-1:cds;Parent=Msa1213480-mRNA-1
chr8_1 three_prime_UTR 73635112 73635312 73635112 ID=Msa1213480-mRNA-1:three_prime_utr;Parent=Msa1213480-mRNA-1
Gene Sequence

>Msa1213480

ATGGGAAGCGACAGTGAAGGTGAGAAATCGGTGCAGAGGGAGAAGGAGAGGAAGAAGATGCAGGCTCTAGCCCCCATTGCAAAACCTCTTGCTGGAAAGAAGCTTTCCAAGAAAACACTCAAGCTTGTTAAAAGAGCTGCTGAAAACAAGTGCATAAAGAGAGGAGTTAAGGAGGTGGTTAAAAGTATAAGGCGAGGTCAAAAAGGAGTGTGTATTATAGCTGGGAACATATCGCCTATTGATGTCATCACTCATGTTCCGATTTTATGTGAGGATAAGGACATTCCATATGTATATGTCTCATCTAAAGAAGACCTTGCAACGGCAGGAGCAACGAAGAGACCAACTTGTTGTGTTTTAGTGATGACCAAGCCTTCAAAGGGTGAACTATCTCAAGAGGTACAAGAGAAACTAAAGTCAGAGTATGATCAAGTTGCATCAGAGTGTAGAGAGCTTCAGTCTACACTTTTTTGA

Protein sequence

>Msa1213480

MGSDSEGEKSVQREKERKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCIIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELSQEVQEKLKSEYDQVASECRELQSTLF*