AlfalfaGEDB | Msa0488880

M. sativa cultivar zhongmu-4 / Msa0488880

KEGG: K17080
GO: GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204
PFAM: PF01145.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488880	XP_024635709.1	99.281	278	2	0	1	278	1	278	0.0	560

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488880	sp\|O04331\|PHB3_ARATH	82.609	276	47	1	1	275	1	276	4.76e-170	474

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488880	B7FJH0	99.281	278	2	0	1	278	1	278	0.0	560

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011960	Msa0488880	0.800381	1.480161e-48	-8.615850e-47
Msa0027770	Msa0488880	0.800910	1.154794e-48	-8.615850e-47
Msa0059110	Msa0488880	0.800546	1.369929e-48	-8.615850e-47
Msa0061080	Msa0488880	0.818492	1.905453e-52	-8.615850e-47
Msa0075500	Msa0488880	0.802877	4.553576e-49	-8.615850e-47
Msa0091560	Msa0488880	0.801236	9.902287e-49	-8.615850e-47
Msa0118590	Msa0488880	0.802374	5.783388e-49	-8.615850e-47
Msa0144370	Msa0488880	0.807182	5.726002e-50	-8.615850e-47
Msa0159170	Msa0488880	0.846855	1.671001e-59	-8.615850e-47
Msa0168230	Msa0488880	0.804601	1.997573e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488880	MtrunA17_Chr3g0079011	99.281	278	2	0	1	278	1	278	0.0	560
Msa0488880	MtrunA17_Chr8g0356051	89.130	276	29	1	1	275	1	276	0.0	504
Msa0488880	MtrunA17_Chr2g0325011	51.429	280	128	4	3	278	8	283	3.02e-92	274
Msa0488880	MtrunA17_Chr4g0040101	50.566	265	129	2	10	274	12	274	6.93e-89	266
Msa0488880	MtrunA17_Chr5g0444361	56.983	179	75	2	1	178	1	178	3.03e-62	194
Msa0488880	MtrunA17_Chr5g0444371	51.685	178	61	2	1	178	2	154	2.01e-50	163
Msa0488880	MtrunA17_Chr6g0449171	58.955	134	17	1	91	224	1	96	1.16e-41	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0488880	AT5G40770.1	82.609	276	47	1	1	275	1	276	4.84e-171	474
Msa0488880	AT3G27280.1	80.645	279	53	1	1	278	1	279	7.06e-169	468
Msa0488880	AT3G27280.2	80.645	279	53	1	1	278	1	279	7.06e-169	468
Msa0488880	AT5G14300.1	66.171	269	64	2	11	278	4	246	1.47e-118	340
Msa0488880	AT1G03860.1	52.239	268	122	2	1	263	1	267	5.98e-92	274
Msa0488880	AT1G03860.3	52.239	268	122	2	1	263	1	267	5.98e-92	274
Msa0488880	AT4G28510.1	51.969	254	121	1	10	263	15	267	4.22e-89	266
Msa0488880	AT5G44140.1	52.157	255	121	1	10	264	15	268	8.80e-87	260
Msa0488880	AT2G20530.2	50.996	251	121	2	13	263	17	265	1.73e-85	257
Msa0488880	AT2G20530.1	50.996	251	121	2	13	263	17	265	1.73e-85	257

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Find 109 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGCTCAGATGAGAT+AGG	0.471367	3_4:+9013703	None:intergenic
AACCTCGCACGCGTCGCATT+CGG	0.385015	3_4:-9018056	Msa0488880:CDS
AACTCATTTCCTCATCCCAT+GGG	0.550217	3_4:-9017919	Msa0488880:CDS
AAGAGAGAGAAGAGAGAGAA+AGG	0.390526	3_4:+9018138	None:intergenic
AAGATCTTTGGTACCGGAGA+TGG	0.484185	3_4:+9017845	None:intergenic
AAGTAGAATATTGAAATCCT+TGG	0.533739	3_4:+9016366	None:intergenic
AATGTCTCTTACCTTCCTGG+TGG	0.667494	3_4:-9014743	Msa0488880:CDS
ACAAAAGTTAGAAATGAACT+TGG	0.549173	3_4:-9013664	Msa0488880:three_prime_UTR
ACAACTCTTAACAGGTAATG+AGG	0.502279	3_4:-9016485	Msa0488880:intron
ACCGTCGACGGTGTAGAGAG+AGG	0.647102	3_4:+9018004	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTAACTAATAGCTTATAG+TGG	-	chr3_4:9014293-9014312	Msa0488880:intron	30.0%
GGTCAAAAGGACTTATAATT+TGG	+	chr3_4:9014363-9014382	None:intergenic	30.0%
TTTCCAATGAAATGGTCAAA+AGG	+	chr3_4:9014376-9014395	None:intergenic	30.0%
GTAAAGTGACTTATACTTTG+GGG	-	chr3_4:9014501-9014520	Msa0488880:intron	30.0%
GTAATTTATAGGGACTGAAT+AGG	-	chr3_4:9015001-9015020	Msa0488880:intron	30.0%
GCTATTACTCATTTGTCATA+TGG	-	chr3_4:9015291-9015310	Msa0488880:intron	30.0%
ATTACTCATTTGTCATATGG+TGG	-	chr3_4:9015294-9015313	Msa0488880:intron	30.0%
GCTTCAAATACAATACAATC+TGG	-	chr3_4:9015661-9015680	Msa0488880:intron	30.0%
AACAAACACAAATCAGTTCT+AGG	+	chr3_4:9015730-9015749	None:intergenic	30.0%
TCTATATATCACCAACACTA+AGG	+	chr3_4:9015949-9015968	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	9013411	9018236	9013411	ID=Msa0488880;Name=Msa0488880
chr3_4	mRNA	9013411	9018236	9013411	ID=Msa0488880-mRNA-1;Parent=Msa0488880;Name=Msa0488880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=105\|1\|1\|1\|0.5\|0.2\|5\|417\|278
chr3_4	exon	9013411	9013822	9013411	ID=Msa0488880-mRNA-1:exon:2969;Parent=Msa0488880-mRNA-1
chr3_4	exon	9014701	9014988	9014701	ID=Msa0488880-mRNA-1:exon:2968;Parent=Msa0488880-mRNA-1
chr3_4	exon	9016319	9016493	9016319	ID=Msa0488880-mRNA-1:exon:2967;Parent=Msa0488880-mRNA-1
chr3_4	exon	9017733	9018128	9017733	ID=Msa0488880-mRNA-1:exon:2966;Parent=Msa0488880-mRNA-1
chr3_4	exon	9018149	9018236	9018149	ID=Msa0488880-mRNA-1:exon:2965;Parent=Msa0488880-mRNA-1
chr3_4	five_prime_UTR	9018149	9018236	9018149	ID=Msa0488880-mRNA-1:five_prime_utr;Parent=Msa0488880-mRNA-1
chr3_4	five_prime_UTR	9018112	9018128	9018112	ID=Msa0488880-mRNA-1:five_prime_utr;Parent=Msa0488880-mRNA-1
chr3_4	CDS	9017733	9018111	9017733	ID=Msa0488880-mRNA-1:cds;Parent=Msa0488880-mRNA-1
chr3_4	CDS	9016319	9016493	9016319	ID=Msa0488880-mRNA-1:cds;Parent=Msa0488880-mRNA-1
chr3_4	CDS	9014706	9014988	9014706	ID=Msa0488880-mRNA-1:cds;Parent=Msa0488880-mRNA-1
chr3_4	three_prime_UTR	9014701	9014705	9014701	ID=Msa0488880-mRNA-1:three_prime_utr;Parent=Msa0488880-mRNA-1
chr3_4	three_prime_UTR	9013411	9013822	9013411	ID=Msa0488880-mRNA-1:three_prime_utr;Parent=Msa0488880-mRNA-1

Gene Sequence

>Msa0488880

ATGGGAAGCAATCAAGCAGCAAACATCCTCTCAAACCTCGCACGCGTCGCATTCGGTCTCGGCGCCGCCGCAACCGCCGTCAACTCCTCTCTCTACACCGTCGACGGTGGCCAACGCGCCGTCCTCTTCGACAGATTTCGCGGCATCCTTTCCGAATCAGTTGGCGAAGGAACTCATTTCCTCATCCCATGGGTTCAAAAGCCTTACGTCTTCGATATCCGCACTCGCCCTCACACATTCTCATCCATCTCCGGTACCAAAGATCTTCAGATGGTGAATCTCACTCTTCGTGTTCTCTCTCGTCCTGATACTCAACGTCTTCCTACTATTGTTCAGAATCTCGGTCTTGAATATGACGAGAAGGTTCTTCCTTCAATCGGTAATGAGGTTTTGAAAGCTGTTGTTGCTCAGTTTAATGCTGATCAGCTTCTTACGGATAGGCCTCAGGTTTCGGCTCTTGTTAGGGATAGTCTTGTGAGAAGGGCCAAGGATTTCAATATTCTACTTGATGATGTTGCTATTACTCATTTGTCATATGGTGGTGAATTCTCTAGGGCTGTTGAGCAGAAGCAGGTGGCACAGCAAGAGGCAGAGAGGTCTAAGTTTGTTGTGATGAAGGCGGAACAGGAGCGTCGTGCTGCGATCATCCGTGCTGAGGGAGAAAGTGATGCTGCAAAGCTGATTTCTGATGCTACTGCTGTTGCTGGTATGGGGTTGATTGAGCTTAGGAGGATTGAGGCTTCCAGGGAAATTGCCGCTACTTTGGCCAAGTCTCCTAATGTCTCTTACCTTCCTGGTGGAAAGAACATGCTCATGGCTCTTAATCCTTCACGTTGA

Protein sequence

>Msa0488880

MGSNQAANILSNLARVAFGLGAAATAVNSSLYTVDGGQRAVLFDRFRGILSESVGEGTHFLIPWVQKPYVFDIRTRPHTFSSISGTKDLQMVNLTLRVLSRPDTQRLPTIVQNLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTDRPQVSALVRDSLVRRAKDFNILLDDVAITHLSYGGEFSRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESDAAKLISDATAVAGMGLIELRRIEASREIAATLAKSPNVSYLPGGKNMLMALNPSR*