AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0351950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351950 MtrunA17_Chr3g0086811 98.045 358 7 0 1 358 1 358 0.0 724
Msa0351950 MtrunA17_Chr1g0201361 31.915 329 173 5 9 336 31 309 5.03e-45 157
Msa0351950 MtrunA17_Chr8g0386871 31.818 330 175 7 8 332 304 588 6.41e-42 154
Msa0351950 MtrunA17_Chr8g0383321 31.715 309 161 5 29 337 53 311 1.22e-41 148
Msa0351950 MtrunA17_Chr1g0200171 29.338 317 166 10 24 333 521 786 7.57e-34 132
Msa0351950 MtrunA17_Chr6g0463351 33.025 324 157 10 42 356 81 353 8.46e-34 128
Msa0351950 MtrunA17_Chr5g0431531 29.573 328 192 6 18 338 29 324 1.07e-33 127
Msa0351950 MtrunA17_Chr2g0296061 28.704 324 181 7 31 326 18 319 1.27e-29 116
Msa0351950 MtrunA17_Chr2g0296061 29.082 196 124 6 128 321 17 199 2.92e-13 70.1
Msa0351950 MtrunA17_Chr2g0296061 24.138 232 143 6 8 226 111 322 1.44e-11 64.7
Msa0351950 MtrunA17_Chr3g0131501 27.545 334 199 9 6 332 184 481 1.49e-29 118
Msa0351950 MtrunA17_Chr8g0366791 30.380 316 185 11 24 329 5 295 1.24e-28 112
Msa0351950 MtrunA17_Chr8g0366791 28.111 217 118 6 24 227 105 296 2.56e-13 69.7
Msa0351950 MtrunA17_Chr8g0366791 28.037 214 120 7 128 331 11 200 6.50e-11 62.8
Msa0351950 MtrunA17_Chr4g0067231 28.221 326 180 10 31 325 17 319 6.34e-28 111
Msa0351950 MtrunA17_Chr4g0067231 29.744 195 126 3 128 321 16 200 2.14e-14 73.2
Msa0351950 MtrunA17_Chr4g0067231 24.255 235 137 7 8 226 114 323 3.77e-11 63.5
Msa0351950 MtrunA17_Chr7g0269701 27.044 318 191 9 31 337 25 312 2.24e-27 110
Msa0351950 MtrunA17_Chr7g0269701 24.510 204 128 4 43 243 138 318 2.61e-12 67.0
Msa0351950 MtrunA17_Chr5g0411411 29.283 321 182 12 24 329 5 295 2.54e-27 109
Msa0351950 MtrunA17_Chr5g0411411 27.602 221 122 6 20 227 101 296 4.55e-12 66.2
Msa0351950 MtrunA17_Chr8g0385571 26.888 331 205 8 6 332 206 503 6.76e-27 111
Msa0351950 MtrunA17_Chr7g0240341 26.562 320 187 11 27 329 24 312 6.74e-25 103
Msa0351950 MtrunA17_Chr7g0240341 23.585 212 142 2 15 226 121 312 8.58e-14 71.2
Msa0351950 MtrunA17_Chr7g0240341 23.629 237 159 4 104 337 4 221 2.60e-12 67.0
Msa0351950 MtrunA17_Chr8g0372531 26.712 292 186 7 42 325 28 299 1.84e-24 101
Msa0351950 MtrunA17_Chr8g0372531 31.250 192 103 5 142 330 30 195 6.10e-15 74.7
Msa0351950 MtrunA17_Chr8g0372531 25.123 203 144 4 31 233 116 310 1.49e-13 70.5
Msa0351950 MtrunA17_Chr8g0347451 23.582 335 197 8 24 329 47 351 9.48e-24 100
Msa0351950 MtrunA17_Chr8g0347451 25.561 223 143 4 118 338 43 244 3.07e-12 67.0
Msa0351950 MtrunA17_Chr8g0347451 35.556 90 57 1 237 325 38 127 7.73e-11 62.8
Msa0351950 MtrunA17_Chr5g0396801 24.566 346 214 8 5 329 17 336 1.84e-23 99.8
Msa0351950 MtrunA17_Chr5g0396801 25.116 215 138 4 126 338 38 231 1.29e-11 65.1
Msa0351950 MtrunA17_Chr7g0252401 25.625 320 191 9 21 332 200 480 5.16e-23 99.8
Msa0351950 MtrunA17_Chr4g0028531 27.365 296 183 7 29 319 23 291 1.44e-22 96.7
Msa0351950 MtrunA17_Chr1g0195101 27.181 298 170 10 44 327 35 299 1.73e-22 96.3
Msa0351950 MtrunA17_Chr3g0135861 25.846 325 211 8 15 328 21 326 1.83e-21 94.0
Msa0351950 MtrunA17_Chr4g0063561 25.574 305 187 7 25 325 120 388 2.47e-21 94.4
Msa0351950 MtrunA17_Chr4g0063561 25.455 220 125 6 116 333 117 299 8.63e-11 62.8
Msa0351950 MtrunA17_Chr3g0137941 24.359 312 188 7 26 329 120 391 4.92e-21 93.6
Msa0351950 MtrunA17_Chr3g0137941 28.194 227 123 7 109 333 109 297 2.92e-13 70.5
Msa0351950 MtrunA17_Chr1g0149111 25.407 307 185 8 25 325 136 404 1.06e-20 92.8
Msa0351950 MtrunA17_Chr1g0149111 32.432 148 88 4 188 333 177 314 5.26e-13 69.7
Msa0351950 MtrunA17_Chr1g0149111 27.136 199 120 6 28 225 233 407 1.05e-11 65.9
Msa0351950 MtrunA17_Chr4g0046981 24.104 307 208 5 25 326 9 295 1.08e-20 91.3
Msa0351950 MtrunA17_Chr4g0046981 22.831 219 138 4 123 335 9 202 8.23e-12 65.5
Msa0351950 MtrunA17_Chr6g0488081 24.545 330 218 9 20 342 10 315 4.33e-20 89.7
Msa0351950 MtrunA17_Chr5g0423111 25.333 300 191 9 44 336 37 310 6.72e-20 89.7
Msa0351950 MtrunA17_Chr5g0423111 25.405 185 118 4 43 224 134 301 2.89e-11 63.9
Msa0351950 MtrunA17_Chr4g0004571 29.393 313 187 9 26 334 14 296 1.17e-19 88.2
Msa0351950 MtrunA17_Chr6g0455381 25.321 312 171 11 42 329 31 304 6.08e-18 83.6
Msa0351950 MtrunA17_Chr2g0293621 27.152 302 183 8 20 309 21 297 1.19e-17 82.8
Msa0351950 MtrunA17_Chr7g0219891 27.027 296 146 14 42 309 35 288 1.55e-16 79.3
Msa0351950 MtrunA17_Chr3g0103681 22.769 325 212 8 14 331 6 298 2.36e-16 78.6
Msa0351950 MtrunA17_Chr4g0006851 23.711 291 178 7 44 329 105 356 2.80e-16 79.3
Msa0351950 MtrunA17_Chr7g0242311 22.222 288 184 6 44 328 103 353 4.59e-16 78.6
Msa0351950 MtrunA17_Chr4g0008061 24.351 308 192 9 28 325 15 291 8.84e-16 77.0
Msa0351950 MtrunA17_Chr4g0000261 25.321 312 193 9 26 325 64 347 1.64e-15 77.0
Msa0351950 MtrunA17_Chr5g0436041 24.611 321 198 8 27 333 33 323 3.32e-15 75.5
Msa0351950 MtrunA17_Chr3g0135801 27.638 199 123 4 28 225 141 319 1.28e-14 73.9
Msa0351950 MtrunA17_Chr2g0331771 28.125 288 169 10 24 305 152 407 2.44e-14 73.9
Msa0351950 MtrunA17_Chr7g0241521 22.697 304 202 8 28 325 17 293 4.68e-14 72.0
Msa0351950 MtrunA17_Chr3g0133111 23.373 338 200 10 26 333 4 312 4.88e-14 72.0
Msa0351950 MtrunA17_Chr3g0133111 25.000 204 135 4 24 225 120 307 6.75e-11 62.8
Msa0351950 MtrunA17_Chr3g0115801 21.474 312 201 10 31 328 119 400 2.52e-12 67.8
Msa0351950 MtrunA17_Chr8g0382201 22.508 311 199 9 31 328 198 479 2.78e-12 67.8
Msa0351950 MtrunA17_Chr8g0343381 25.641 273 160 6 28 276 33 286 2.91e-12 67.0
Msa0351950 MtrunA17_Chr7g0275411 21.277 329 204 9 41 334 30 338 6.38e-12 65.9
Msa0351950 MtrunA17_Chr3g0136041 22.701 348 233 7 4 329 8 341 8.47e-12 65.9
Msa0351950 MtrunA17_Chr3g0126331 24.653 288 176 10 65 334 126 390 9.53e-12 65.9
Msa0351950 MtrunA17_Chr1g0196921 22.517 302 194 10 15 308 5 274 2.25e-11 63.9
Msa0351950 MtrunA17_Chr1g0196921 30.682 176 87 7 142 310 30 177 2.61e-11 63.9
Msa0351950 MtrunA17_Chr7g0251981 25.862 290 155 13 35 308 85 330 7.07e-11 63.2
Msa0351950 MtrunA17_Chr8g0385891 24.739 287 162 12 35 308 76 321 8.50e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351950 AT1G74240.1 69.252 361 99 3 1 353 1 357 5.99e-170 478
Msa0351950 AT1G74240.2 71.565 313 85 2 41 353 1 309 1.43e-150 427
Msa0351950 AT4G39460.2 32.635 334 170 7 5 337 38 317 4.01e-47 163
Msa0351950 AT4G39460.1 32.635 334 170 7 5 337 38 317 4.01e-47 163
Msa0351950 AT4G39460.3 32.635 334 170 7 5 337 38 317 4.01e-47 163
Msa0351950 AT1G34065.2 31.515 330 173 6 5 334 55 331 1.56e-44 156
Msa0351950 AT1G34065.1 31.515 330 173 6 5 334 62 338 2.00e-44 156
Msa0351950 AT2G26360.1 29.870 308 170 6 24 329 111 374 2.29e-37 139
Msa0351950 AT4G11440.1 29.904 311 180 5 22 328 324 600 1.37e-35 137
Msa0351950 AT4G11440.2 29.904 311 180 5 22 328 324 600 1.37e-35 137
Msa0351950 AT2G30160.1 30.599 317 180 8 25 333 39 323 1.95e-31 121
Msa0351950 AT1G07030.1 29.155 343 194 10 4 332 13 320 2.54e-31 121
Msa0351950 AT2G35800.1 27.097 310 175 7 24 329 541 803 3.11e-30 122
Msa0351950 AT5G46800.2 30.599 317 190 9 25 332 5 300 3.85e-30 117
Msa0351950 AT5G46800.3 30.599 317 190 9 25 332 5 300 3.85e-30 117
Msa0351950 AT5G46800.1 30.599 317 190 9 25 332 5 300 3.85e-30 117
Msa0351950 AT1G25380.1 28.086 324 189 10 44 354 37 329 3.08e-27 110
Msa0351950 AT1G25380.1 25.789 190 110 5 43 224 136 302 8.43e-13 69.3
Msa0351950 AT1G25380.2 28.086 324 189 10 44 354 37 329 3.08e-27 110
Msa0351950 AT1G25380.2 25.789 190 110 5 43 224 136 302 8.43e-13 69.3
Msa0351950 AT5G48970.1 27.829 327 183 8 31 326 25 329 1.25e-26 108
Msa0351950 AT5G48970.1 24.779 226 149 5 128 344 24 237 2.59e-11 64.7
Msa0351950 AT3G53940.1 28.116 345 198 13 9 337 55 365 2.95e-26 108
Msa0351950 AT3G53940.1 26.016 246 141 6 107 337 48 267 6.12e-13 69.7
Msa0351950 AT5G42130.1 30.068 296 161 7 42 328 132 390 4.58e-26 108
Msa0351950 AT2G47490.1 28.947 304 182 9 44 340 33 309 1.79e-25 105
Msa0351950 AT3G21390.1 27.761 335 190 9 31 335 22 334 1.92e-25 105
Msa0351950 AT3G21390.1 28.788 198 120 6 128 321 21 201 4.30e-12 67.0
Msa0351950 AT3G21390.1 23.629 237 152 5 3 226 108 328 2.99e-11 64.3
Msa0351950 AT3G21390.2 27.761 335 190 9 31 335 44 356 2.88e-25 105
Msa0351950 AT3G21390.2 29.648 199 117 7 128 321 43 223 5.27e-12 66.6
Msa0351950 AT3G21390.2 23.629 237 152 5 3 226 130 350 4.11e-11 63.9
Msa0351950 AT4G32400.1 27.358 318 185 7 25 333 111 391 1.12e-22 98.6
Msa0351950 AT4G32400.1 26.606 218 135 5 9 225 189 382 1.78e-12 68.6
Msa0351950 AT4G32400.1 25.676 222 125 6 112 331 104 287 7.65e-11 63.5
Msa0351950 AT5G01340.1 26.250 320 196 8 5 319 3 287 2.08e-22 96.3
Msa0351950 AT4G01100.1 22.941 340 193 9 24 329 38 342 2.61e-22 97.1
Msa0351950 AT4G01100.1 25.620 242 157 4 99 338 15 235 2.03e-13 70.9
Msa0351950 AT2G37890.1 25.938 320 191 10 25 329 42 330 2.84e-22 96.7
Msa0351950 AT5G66380.1 26.923 312 193 8 25 325 7 294 7.01e-22 94.7
Msa0351950 AT4G01100.2 23.276 348 196 9 24 329 38 356 1.42e-21 95.1
Msa0351950 AT5G48970.2 27.857 280 160 7 67 326 1 258 2.49e-21 92.4
Msa0351950 AT4G26180.1 25.526 333 219 10 26 352 19 328 4.49e-21 93.2
Msa0351950 AT3G55640.1 24.348 345 217 9 7 337 17 331 6.34e-21 92.8
Msa0351950 AT3G55640.1 26.446 242 160 5 103 344 16 239 7.35e-15 75.1
Msa0351950 AT3G55640.4 24.348 345 217 9 7 337 17 331 6.34e-21 92.8
Msa0351950 AT3G55640.4 26.446 242 160 5 103 344 16 239 7.35e-15 75.1
Msa0351950 AT2G33820.1 23.676 321 198 7 22 326 12 301 6.88e-21 92.0
Msa0351950 AT4G01100.3 23.125 320 177 9 44 329 8 292 2.42e-20 90.5
Msa0351950 AT4G01100.3 29.814 161 110 2 180 338 26 185 4.03e-13 69.7
Msa0351950 AT5G51050.1 25.796 314 184 11 28 332 223 496 1.83e-19 89.7
Msa0351950 AT4G26180.2 26.923 286 182 9 26 305 19 283 3.29e-19 87.0
Msa0351950 AT4G26180.2 31.765 170 88 7 182 336 56 212 5.06e-13 69.3
Msa0351950 AT5G07320.1 25.939 293 171 9 44 331 225 476 4.09e-19 89.0
Msa0351950 AT1G14560.1 26.531 294 188 6 44 328 43 317 4.15e-19 87.4
Msa0351950 AT1G14560.1 26.066 211 129 4 27 225 122 317 2.49e-13 70.5
Msa0351950 AT5G61810.2 22.727 330 210 7 6 331 44 332 9.04e-19 86.7
Msa0351950 AT5G15640.1 26.207 290 158 9 42 309 42 297 2.59e-18 85.1
Msa0351950 AT5G61810.1 22.727 330 210 7 6 331 187 475 3.39e-18 85.9
Msa0351950 AT2G33820.3 23.100 329 198 8 22 326 12 309 3.75e-18 84.7
Msa0351950 AT5G15640.2 26.207 290 158 9 42 309 35 290 4.65e-18 84.3
Msa0351950 AT1G14560.2 27.306 271 169 6 44 305 43 294 6.79e-18 83.6
Msa0351950 AT1G14560.2 26.596 188 111 4 27 202 122 294 1.93e-11 64.7
Msa0351950 AT3G54110.1 23.585 318 202 8 26 333 13 299 8.19e-18 83.2
Msa0351950 AT2G39970.1 25.649 308 197 9 41 327 21 317 1.96e-16 79.7
Msa0351950 AT1G72820.1 26.627 338 197 11 17 329 25 336 2.77e-16 79.3
Msa0351950 AT1G72820.2 26.627 338 197 11 17 329 25 336 2.77e-16 79.3
Msa0351950 AT1G79900.1 28.231 294 170 8 43 333 31 286 6.62e-16 77.8
Msa0351950 AT3G20240.1 27.329 322 174 9 26 325 50 333 1.01e-15 77.8
Msa0351950 AT3G55640.2 26.033 242 161 4 103 344 16 239 2.15e-15 75.5
Msa0351950 AT3G55640.3 26.033 242 161 4 103 344 16 239 2.15e-15 75.5
Msa0351950 AT4G03115.3 24.762 315 185 10 24 328 66 338 3.84e-15 76.3
Msa0351950 AT4G03115.3 23.963 217 136 4 14 226 148 339 6.15e-12 66.6
Msa0351950 AT4G03115.1 24.762 315 185 10 24 328 34 306 4.35e-15 75.5
Msa0351950 AT4G03115.1 23.963 217 136 4 14 226 116 307 4.94e-12 66.6
Msa0351950 AT5G01500.1 21.993 291 183 7 44 329 135 386 4.91e-15 76.3
Msa0351950 AT3G51870.1 22.259 301 190 7 34 329 97 358 1.32e-14 74.7
Msa0351950 AT5G58970.1 22.082 317 201 7 28 329 16 301 4.78e-14 72.4
Msa0351950 AT1G14560.3 26.066 211 129 4 27 225 24 219 7.53e-14 70.9
Msa0351950 AT1G14560.3 26.293 232 146 4 106 328 4 219 3.15e-13 68.9
Msa0351950 AT3G53940.2 26.829 246 139 7 107 337 48 267 2.19e-13 70.1
Msa0351950 AT3G53940.2 27.170 265 148 11 9 261 55 286 1.11e-11 65.1
Msa0351950 AT1G14140.1 23.448 290 187 7 27 308 15 277 2.25e-13 70.5
Msa0351950 AT2G33820.4 24.272 206 138 5 22 225 12 201 7.67e-13 68.6
Msa0351950 AT4G03115.5 23.963 217 136 4 14 226 45 236 1.27e-12 67.4
Msa0351950 AT5G26200.1 25.231 325 206 11 26 334 37 340 1.72e-12 68.2
Msa0351950 AT5G56450.1 26.087 207 127 7 28 231 145 328 2.42e-12 67.8
Msa0351950 AT4G03115.6 23.963 217 136 4 14 226 53 244 2.59e-12 66.6
Msa0351950 AT5G64970.1 22.727 308 200 8 34 328 137 419 4.09e-12 67.4
Msa0351950 AT5G09470.1 26.255 259 159 7 74 328 99 329 4.95e-12 66.6
Msa0351950 AT5G64970.2 22.476 307 200 8 35 328 14 295 5.27e-12 66.2
Msa0351950 AT5G58970.2 25.000 220 130 6 126 330 16 215 5.48e-11 63.2

Find 111 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCAAATTCTTGTGGTTT+AGG 0.175362 3_1:+19544501 None:intergenic
GGAGCTGTTGCGGGTGCTTT+TGG 0.179774 3_1:-19542380 Msa0351950:CDS
CCATCTGCAATATGCCTTTC+TGG 0.185244 3_1:+19542136 None:intergenic
TTCCTTTGAGGGCCTGGTTT+TGG 0.189025 3_1:-19540293 Msa0351950:CDS
GAATTATTAACGTGCCAATT+TGG 0.247306 3_1:+19540313 None:intergenic
GGCTTCAGCGCTTACCTTCA+TGG 0.250292 3_1:-19539688 Msa0351950:CDS
CAAAACTAGGCTGCAAGTTC+AGG 0.252977 3_1:-19540135 Msa0351950:CDS
GAAATATATGATTATTATAA+AGG 0.257154 3_1:-19541064 Msa0351950:CDS
ATGCAGAACACAGGGTTTAA+AGG 0.259624 3_1:-19541017 Msa0351950:CDS
GCGACTGGTGCAACATATTT+TGG 0.263682 3_1:-19541732 Msa0351950:CDS
GGTGTAGTACCTGGTGTTAC+TGG 0.266882 3_1:-19541762 Msa0351950:CDS
AGTTATTGGAGAATATTATT+TGG 0.279272 3_1:-19539219 Msa0351950:three_prime_UTR
GTTCGGAGCTTGTGATTTAC+TGG 0.287890 3_1:+19544431 None:intergenic
AAGCAAATTCTTGTGGTTTA+GGG 0.291552 3_1:+19544502 None:intergenic
AGGAGTTAAGGGGATGTTTA+GGG 0.293636 3_1:-19539742 Msa0351950:CDS
TGGATGCAATTTACAACATA+TGG 0.297888 3_1:-19539773 Msa0351950:CDS
CAAAGTCAAGCTATTCTAAA+TGG 0.302898 3_1:-19542314 Msa0351950:CDS
ATCCTAGCCTTGGTGGCCAC+TGG 0.304355 3_1:-19541671 Msa0351950:CDS
AAGGAGTTAAGGGGATGTTT+AGG 0.304885 3_1:-19539743 Msa0351950:CDS
TCTTCACATTACAGCCTCTA+TGG 0.319361 3_1:-19539338 Msa0351950:three_prime_UTR
GATGGATATCTAATCCAAAT+TGG 0.340977 3_1:-19540327 Msa0351950:CDS
CACTGGGCACATTTCATTGC+TGG 0.343281 3_1:-19541654 Msa0351950:CDS
TTTGTATGGGGAGCTGTTGC+GGG 0.362454 3_1:-19542389 Msa0351950:CDS
AAGTATGGAGGGAGTTTGTA+TGG 0.370405 3_1:-19542403 Msa0351950:CDS
AGTAGAAAAGAAGAAATCTT+TGG 0.370427 3_1:-19539592 Msa0351950:CDS
TGCAGAACACAGGGTTTAAA+GGG 0.376283 3_1:-19541016 Msa0351950:CDS
ATGGGCTAAGGAAGGAGTTA+AGG 0.377069 3_1:-19539754 Msa0351950:CDS
CACGTTAATAATTCCTTTGA+GGG 0.388766 3_1:-19540304 Msa0351950:CDS
GCAAGGGATGTACCATTTGC+TGG 0.397105 3_1:-19540514 Msa0351950:CDS
CGGTCTGTCTGGAAGGTTGA+TGG 0.398866 3_1:-19542111 Msa0351950:CDS
TCTATTGTGTTTAGGTATAA+CGG 0.412192 3_1:-19539801 Msa0351950:intron
TGCATATCTCACCACTCCTT+TGG 0.414329 3_1:-19540165 Msa0351950:CDS
TGCAGATGGTGCGGTCTGTC+TGG 0.418211 3_1:-19542122 Msa0351950:CDS
TCCTAGCCTTGGTGGCCACT+GGG 0.420808 3_1:-19541670 Msa0351950:CDS
GGTTTAAAGGGTTTATATGC+AGG 0.422881 3_1:-19541004 Msa0351950:CDS
TTGAAAGATGCTACAGAGTA+CGG 0.432563 3_1:-19540358 Msa0351950:CDS
CTTGATCAATCATTCATCAA+TGG 0.433132 3_1:-19544472 Msa0351950:exon
AAGTTCAGGGTTCAACTTTG+AGG 0.434100 3_1:-19540121 Msa0351950:intron
AGCTATTCTAAATGGTGTTA+AGG 0.436394 3_1:-19542306 Msa0351950:intron
TAATAATTCCTTTGAGGGCC+TGG 0.437731 3_1:-19540299 Msa0351950:CDS
GAGAATTGCGTGGTACATTC+CGG 0.443486 3_1:-19539709 Msa0351950:CDS
AAATATATGATTATTATAAA+GGG 0.444285 3_1:-19541063 Msa0351950:CDS
GTTTGTATGGGGAGCTGTTG+CGG 0.447613 3_1:-19542390 Msa0351950:CDS
CAGAGTACGGGAAGCGAAGA+TGG 0.449993 3_1:-19540345 Msa0351950:CDS
CATTTCATTGCTGGAGCTGT+TGG 0.450661 3_1:-19541645 Msa0351950:intron
CGCTGCTTTATCACTTCGCA+TGG 0.451002 3_1:+19541163 None:intergenic
TAACTAAGTCAAACTTGGTC+TGG 0.455957 3_1:-19539416 Msa0351950:three_prime_UTR
GCACGTTAATAATTCCTTTG+AGG 0.456007 3_1:-19540305 Msa0351950:CDS
AGCGCTTACCTTCATGGCTG+TGG 0.458535 3_1:-19539682 Msa0351950:CDS
AAGCAGCGCATGCAAGTTCA+AGG 0.461159 3_1:-19541148 Msa0351950:CDS
GGAATGTACCACGCAATTCT+CGG 0.466750 3_1:+19539711 None:intergenic
TGGGCTAAGGAAGGAGTTAA+GGG 0.467533 3_1:-19539753 Msa0351950:CDS
AACATTGATCGAACCACCAT+TGG 0.469379 3_1:+19539626 None:intergenic
CTTTGGACGTCGTCAAAACT+AGG 0.479684 3_1:-19540148 Msa0351950:CDS
AACTTTAACTAAGTCAAACT+TGG 0.481020 3_1:-19539421 Msa0351950:three_prime_UTR
TGGAAGGTTGATGGATTAAG+AGG 0.483974 3_1:-19542102 Msa0351950:intron
GAATGTACCACGCAATTCTC+GGG 0.494354 3_1:+19539712 None:intergenic
GGATGCAATTTACAACATAT+GGG 0.498562 3_1:-19539772 Msa0351950:CDS
TGCATATTGAGCTGCCTGCA+TGG 0.498693 3_1:+19541035 None:intergenic
CTTCATTGCAGTAGAACTCC+AGG 0.501088 3_1:+19541114 None:intergenic
GAGAAATTCCACAGCCATGA+AGG 0.502862 3_1:+19539674 None:intergenic
AATAATATTCTCCAATAACT+TGG 0.507864 3_1:+19539222 None:intergenic
AAAACTAGGCTGCAAGTTCA+GGG 0.510587 3_1:-19540134 Msa0351950:CDS
TAATCATATATTTCTGCACC+AGG 0.515860 3_1:+19541073 None:intergenic
AGTATGGAGGGAGTTTGTAT+GGG 0.522756 3_1:-19542402 Msa0351950:CDS
GAGGATTCACATCCTAGCCT+TGG 0.526709 3_1:-19541681 Msa0351950:CDS
TGGGGAAGGAATGATGCATC+CGG 0.530320 3_1:-19542360 Msa0351950:CDS
AATACCATCAGGCCAGCAAA+TGG 0.532808 3_1:+19540502 None:intergenic
AGAAAAGAAGAAATCTTTGG+AGG 0.540442 3_1:-19539589 Msa0351950:CDS
AAACAGAAAGCAAATTCTTG+TGG 0.541182 3_1:+19544495 None:intergenic
TGTACCATTTGCTGGCCTGA+TGG 0.545241 3_1:-19540506 Msa0351950:intron
ATTATGATATTGAAGTATGG+AGG 0.546460 3_1:-19542415 Msa0351950:intron
GTTTAAAGGGTTTATATGCA+GGG 0.548432 3_1:-19541003 Msa0351950:intron
GTTTAGGTATAACGGTTGGT+TGG 0.552562 3_1:-19539793 Msa0351950:intron
CGTTCAGTTTAACTCATGCA+TGG 0.554337 3_1:-19539381 Msa0351950:three_prime_UTR
AGTTCTACTGCAATGAAGAA+TGG 0.554759 3_1:-19541109 Msa0351950:CDS
GTTACTGGCTCTCTTGCGAC+TGG 0.554875 3_1:-19541747 Msa0351950:CDS
TCCCAAAACCAGGCCCTCAA+AGG 0.560158 3_1:+19540291 None:intergenic
ACATTGATCGAACCACCATT+GGG 0.560504 3_1:+19539627 None:intergenic
CAGCTAATCCTCCCAAAACC+AGG 0.561108 3_1:+19540281 None:intergenic
CTACAGATATTTGTCTACAC+TGG 0.566858 3_1:-19540536 Msa0351950:intron
ATGAAGGTAAGCGCTGAAGC+CGG 0.569322 3_1:+19539690 None:intergenic
AGGAGGCTAGTTAAAAGTTG+TGG 0.569974 3_1:-19539569 Msa0351950:exon
AAAGAAGAAATCTTTGGAGG+AGG 0.570380 3_1:-19539586 Msa0351950:CDS
GATTCACATCCTAGCCTTGG+TGG 0.573120 3_1:-19541678 Msa0351950:CDS
TTCAAGGCACAATTACATCC+TGG 0.574829 3_1:-19541132 Msa0351950:CDS
TGAAAGATGCTACAGAGTAC+GGG 0.575711 3_1:-19540357 Msa0351950:CDS
CAGCTCAATATGCAGAACAC+AGG 0.577068 3_1:-19541026 Msa0351950:CDS
TATAAAGGGATGTTCCATGC+AGG 0.579831 3_1:-19541049 Msa0351950:CDS
GCCCAGTGGCCACCAAGGCT+AGG 0.587248 3_1:+19541669 None:intergenic
ATTTGTCTGTAGAACCAGAA+AGG 0.587505 3_1:-19542150 Msa0351950:intron
TGGTCGTGAGAAACGTGGTT+CGG 0.588266 3_1:+19544414 None:intergenic
TTGTGTTTAGGTATAACGGT+TGG 0.591535 3_1:-19539797 Msa0351950:intron
CCAGAAAGGCATATTGCAGA+TGG 0.592867 3_1:-19542136 Msa0351950:CDS
GATGGTGCGGTCTGTCTGGA+AGG 0.593657 3_1:-19542118 Msa0351950:CDS
GATATTTGTCTACACTGGCA+AGG 0.597256 3_1:-19540531 Msa0351950:CDS
GCAAGAGAGCCAGTAACACC+AGG 0.599638 3_1:+19541753 None:intergenic
AATTTACAACATATGGGCTA+AGG 0.602788 3_1:-19539766 Msa0351950:CDS
TTATGATATTGAAGTATGGA+GGG 0.606052 3_1:-19542414 Msa0351950:intron
TACAACATATGGGCTAAGGA+AGG 0.606603 3_1:-19539762 Msa0351950:CDS
ATATTTGTCTACACTGGCAA+GGG 0.612528 3_1:-19540530 Msa0351950:CDS
AATGGCATTGCAATAAAACC+TGG 0.616472 3_1:-19541091 Msa0351950:CDS
TTTGACGACGTCCAAAGGAG+TGG 0.622510 3_1:+19540154 None:intergenic
AGCTCAATATGCAGAACACA+GGG 0.628284 3_1:-19541025 Msa0351950:CDS
GTATGGAGGGAGTTTGTATG+GGG 0.630655 3_1:-19542401 Msa0351950:CDS
GGAGTTAAGGGGATGTTTAG+GGG 0.637208 3_1:-19539741 Msa0351950:CDS
AATGTGCCCAGTGGCCACCA+AGG 0.650741 3_1:+19541664 None:intergenic
GGGCTAAGGAAGGAGTTAAG+GGG 0.653081 3_1:-19539752 Msa0351950:CDS
AAGGCATATTGCAGATGGTG+CGG 0.663444 3_1:-19542131 Msa0351950:CDS
GTAGCGTCCCGAGAATTGCG+TGG 0.697563 3_1:-19539719 Msa0351950:CDS
CAGCAATGAAATGTGCCCAG+TGG 0.728322 3_1:+19541655 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATTAAAAAATT+CGG + chr3_1:19539409-19539428 None:intergenic 0.0%
!!! ATTTTTCTATTATAATTTGA+TGG - chr3_1:19540033-19540052 Msa0351950:intron 10.0%
!! AAAATATAAGCAAAAAAATA+AGG + chr3_1:19542550-19542569 None:intergenic 10.0%
!! GAAATATATGATTATTATAA+AGG - chr3_1:19542701-19542720 Msa0351950:intron 10.0%
!!! TTGTTATTATTTGAAATTGA+AGG - chr3_1:19539476-19539495 Msa0351950:three_prime_UTR 15.0%
!!! TCATTTTTTCAAATTTTTAC+TGG - chr3_1:19539825-19539844 Msa0351950:intron 15.0%
!! AATAGAAAAATTGTGTTTAA+TGG + chr3_1:19540024-19540043 None:intergenic 15.0%
!!! AACATAAAAGTTAAGTTTTA+TGG + chr3_1:19540380-19540399 None:intergenic 15.0%
!! ACAATATATAATTAATCACA+AGG + chr3_1:19541968-19541987 None:intergenic 15.0%
!! TGATTAATTATATATTGTTC+AGG - chr3_1:19541970-19541989 Msa0351950:intron 15.0%
!! ACTTATTTGCAAAAATAAAT+GGG + chr3_1:19542328-19542347 None:intergenic 15.0%
!! AACTTATTTGCAAAAATAAA+TGG + chr3_1:19542329-19542348 None:intergenic 15.0%
!!! ATTTTTTTGCTTATATTTTC+AGG - chr3_1:19542551-19542570 Msa0351950:intron 15.0%
!!! TAAATTGATAATGACAAAAA+AGG - chr3_1:19543876-19543895 Msa0351950:intron 15.0%
!!! ATTAATTAGTACCGAAAAAA+TGG + chr3_1:19539374-19539393 None:intergenic 20.0%
!! AAAATCTACAGCTAATAAAA+TGG + chr3_1:19539458-19539477 None:intergenic 20.0%
!!! TTTTGATTTTCCTAATTTTG+TGG - chr3_1:19539590-19539609 Msa0351950:CDS 20.0%
!!! TTTGATTTTCCTAATTTTGT+GGG - chr3_1:19539591-19539610 Msa0351950:CDS 20.0%
!! TTCTATTATAATTTGATGGA+AGG - chr3_1:19540037-19540056 Msa0351950:intron 20.0%
!! AAGTAGTTAAGAATTCTAAT+TGG - chr3_1:19540429-19540448 Msa0351950:intron 20.0%
!!! TCAACTTTTATATTACAATC+TGG - chr3_1:19540893-19540912 Msa0351950:intron 20.0%
!! GTGTGACAAAAAATTATTAA+AGG + chr3_1:19541019-19541038 None:intergenic 20.0%
!!! TTTGTTTTCTAGTAATAATG+AGG + chr3_1:19541274-19541293 None:intergenic 20.0%
!! ATTGAAGAAAGACAAAATAA+TGG + chr3_1:19541306-19541325 None:intergenic 20.0%
!! TGTATTATGATATTGAAGTA+TGG - chr3_1:19541347-19541366 Msa0351950:intron 20.0%
!! TTTAATATTTGTCCCAAATA+TGG - chr3_1:19541702-19541721 Msa0351950:CDS 20.0%
!! TTAATATTTGTCCCAAATAT+GGG - chr3_1:19541703-19541722 Msa0351950:CDS 20.0%
!! AAATCAAAATACCCATATTT+GGG + chr3_1:19541717-19541736 None:intergenic 20.0%
!! AAAATCAAAATACCCATATT+TGG + chr3_1:19541718-19541737 None:intergenic 20.0%
!!! TTGTTTAAGAAAAGAGTTTT+TGG - chr3_1:19541803-19541822 Msa0351950:intron 20.0%
!!! TAATTGAAGTATTCCATTTA+TGG - chr3_1:19542368-19542387 Msa0351950:CDS 20.0%
!!! ATCTTCGTAAAATCATTTTA+TGG + chr3_1:19542977-19542996 None:intergenic 20.0%
!! AACTAGTTATATAAGTCAAA+TGG + chr3_1:19543072-19543091 None:intergenic 20.0%
!!! TAAACATTTTCTTCTTTCTT+TGG - chr3_1:19543161-19543180 Msa0351950:intron 20.0%
!!! TTTTGCTCAAATAATTAAAC+AGG - chr3_1:19543571-19543590 Msa0351950:intron 20.0%
!! ATAACATGTTAGAATAGTTA+TGG + chr3_1:19543683-19543702 None:intergenic 20.0%
!! ACTATTCTAACATGTTATTA+TGG - chr3_1:19543685-19543704 Msa0351950:intron 20.0%
!!! TTTATGCAAAATTGATTTTC+TGG - chr3_1:19543791-19543810 Msa0351950:intron 20.0%
!!! GTCATTATCAATTTAAGATA+AGG + chr3_1:19543871-19543890 None:intergenic 20.0%
!! ATCTTTGTAAAAATCAAGAT+GGG + chr3_1:19544238-19544257 None:intergenic 20.0%
!!! ATCTTGATTTTTACAAAGAT+GGG - chr3_1:19544238-19544257 Msa0351950:intron 20.0%
!!! ATAATTTTCTTATTGCATCA+TGG + chr3_1:19544312-19544331 None:intergenic 20.0%
!! AATAATATTCTCCAATAACT+TGG + chr3_1:19544546-19544565 None:intergenic 20.0%
!! GAAATTGAAGGAATTTTTCT+TGG - chr3_1:19539488-19539507 Msa0351950:three_prime_UTR 25.0%
! TTGCAAATTTCTTCAAACAT+TGG + chr3_1:19539521-19539540 None:intergenic 25.0%
!! TTTCAAATTTTTACTGGTGT+TGG - chr3_1:19539831-19539850 Msa0351950:intron 25.0%
! TCAAAAATGCAGGTAAATTT+GGG + chr3_1:19539920-19539939 None:intergenic 25.0%
! TTCAAAAATGCAGGTAAATT+TGG + chr3_1:19539921-19539940 None:intergenic 25.0%
!! TTCAAATTTTTATGAGTGTC+CGG - chr3_1:19540132-19540151 Msa0351950:CDS 25.0%
! GAAAAATATAGGCTTCTTAT+TGG - chr3_1:19540316-19540335 Msa0351950:CDS 25.0%
! TATGTTACACTCTGATTATT+TGG - chr3_1:19540394-19540413 Msa0351950:intron 25.0%
! ATGTTACACTCTGATTATTT+GGG - chr3_1:19540395-19540414 Msa0351950:intron 25.0%
!!! TGATTATTTGGGTTTTTGTT+CGG - chr3_1:19540406-19540425 Msa0351950:intron 25.0%
!! TGAACTTTTGTATGATTTGA+AGG - chr3_1:19540638-19540657 Msa0351950:intron 25.0%
! CTAAATGCAGATACAAAAAT+GGG + chr3_1:19540733-19540752 None:intergenic 25.0%
! TCTAAATGCAGATACAAAAA+TGG + chr3_1:19540734-19540753 None:intergenic 25.0%
! TTACAACCTTACAAGTAATT+TGG - chr3_1:19540992-19541011 Msa0351950:intron 25.0%
! TACAACCTTACAAGTAATTT+GGG - chr3_1:19540993-19541012 Msa0351950:intron 25.0%
! ATTATGATATTGAAGTATGG+AGG - chr3_1:19541350-19541369 Msa0351950:intron 25.0%
! TTATGATATTGAAGTATGGA+GGG - chr3_1:19541351-19541370 Msa0351950:intron 25.0%
! TCACAGTCTAATTTATCTAT+AGG + chr3_1:19541496-19541515 None:intergenic 25.0%
! AATACTTCAATTACTTACTG+AGG + chr3_1:19542361-19542380 None:intergenic 25.0%
! TCATGATAATCAATCATTGT+TGG + chr3_1:19542395-19542414 None:intergenic 25.0%
! AATAAACCTTCAAATTTGCA+CGG + chr3_1:19542471-19542490 None:intergenic 25.0%
!! GCTTTTTATTCACAATCAAA+CGG + chr3_1:19542518-19542537 None:intergenic 25.0%
! ATCAAATTAAACGAGAAAGA+GGG + chr3_1:19542857-19542876 None:intergenic 25.0%
! TATCAAATTAAACGAGAAAG+AGG + chr3_1:19542858-19542877 None:intergenic 25.0%
! AGTTGAATTATGTGATACTA+TGG - chr3_1:19543088-19543107 Msa0351950:intron 25.0%
!! AAGCTCTAACTTATCTAAAT+TGG + chr3_1:19543117-19543136 None:intergenic 25.0%
! ATTTGTAGACAAATATCATC+AGG + chr3_1:19543318-19543337 None:intergenic 25.0%
! ACTTAAGTACATATGTTCAA+AGG + chr3_1:19543530-19543549 None:intergenic 25.0%
! GTTCATTGAAGAAAATTAAG+TGG + chr3_1:19543738-19543757 None:intergenic 25.0%
!!! ATTGATTTTCTGGTGTATTA+TGG - chr3_1:19543801-19543820 Msa0351950:intron 25.0%
!!! AAAAGGCTATTTTTTGCATT+TGG - chr3_1:19543893-19543912 Msa0351950:intron 25.0%
!! ATTTGGATTGTCATGTTTTA+TGG - chr3_1:19543910-19543929 Msa0351950:intron 25.0%
! TTGCTTTATCTATTGTGTTT+AGG - chr3_1:19543956-19543975 Msa0351950:intron 25.0%
! TCTATTGTGTTTAGGTATAA+CGG - chr3_1:19543964-19543983 Msa0351950:intron 25.0%
! AGTAGAAAAGAAGAAATCTT+TGG - chr3_1:19544173-19544192 Msa0351950:intron 25.0%
! CATCTTTGTAAAAATCAAGA+TGG + chr3_1:19544239-19544258 None:intergenic 25.0%
!! CATCTTGATTTTTACAAAGA+TGG - chr3_1:19544237-19544256 Msa0351950:intron 25.0%
! AACTTTAACTAAGTCAAACT+TGG - chr3_1:19544344-19544363 Msa0351950:intron 25.0%
! TAAACTGAACGATCAAAAAT+GGG + chr3_1:19544375-19544394 None:intergenic 25.0%
! TTAAACTGAACGATCAAAAA+TGG + chr3_1:19544376-19544395 None:intergenic 25.0%
AAGCAAATTCTTGTGGTTTA+GGG + chr3_1:19539266-19539285 None:intergenic 30.0%
AAAGCAAATTCTTGTGGTTT+AGG + chr3_1:19539267-19539286 None:intergenic 30.0%
AAACAGAAAGCAAATTCTTG+TGG + chr3_1:19539273-19539292 None:intergenic 30.0%
CTTGATCAATCATTCATCAA+TGG - chr3_1:19539293-19539312 Msa0351950:three_prime_UTR 30.0%
TCTTAACAACCCACAAAATT+AGG + chr3_1:19539603-19539622 None:intergenic 30.0%
!! AATGATATAAAGCACTGACA+TGG + chr3_1:19539878-19539897 None:intergenic 30.0%
!!! ACCTGCATTTTTGAAATTGA+TGG - chr3_1:19539926-19539945 Msa0351950:intron 30.0%
TCCATCAATTTCAAAAATGC+AGG + chr3_1:19539930-19539949 None:intergenic 30.0%
AAGTAAACTAACATCCAACA+AGG + chr3_1:19539973-19539992 None:intergenic 30.0%
!!! TACCTGCATTTTGAAATTGA+TGG - chr3_1:19540284-19540303 Msa0351950:CDS 30.0%
TACCATCAATTTCAAAATGC+AGG + chr3_1:19540289-19540308 None:intergenic 30.0%
! TTGAAATTGATGGTATGACA+TGG - chr3_1:19540294-19540313 Msa0351950:CDS 30.0%
GGTATGACATGGAAAAATAT+AGG - chr3_1:19540305-19540324 Msa0351950:CDS 30.0%
ACTAGAAAGTTTCTTGATTG+AGG - chr3_1:19540552-19540571 Msa0351950:intron 30.0%
GTTCTTATGTGGCATAAAAT+TGG + chr3_1:19540579-19540598 None:intergenic 30.0%
! TTTTATGCCACATAAGAACA+TGG - chr3_1:19540580-19540599 Msa0351950:intron 30.0%
TCATGTTTCAACATAATCCT+GGG + chr3_1:19540621-19540640 None:intergenic 30.0%
TTCATGTTTCAACATAATCC+TGG + chr3_1:19540622-19540641 None:intergenic 30.0%
GTATCTGCATTTAGAAATTG+TGG - chr3_1:19540739-19540758 Msa0351950:intron 30.0%
CATTTAGAAATTGTGGTATG+AGG - chr3_1:19540746-19540765 Msa0351950:intron 30.0%
! ATTTTGCATTTTGAACAGCA+TGG - chr3_1:19540806-19540825 Msa0351950:intron 30.0%
TGAACAGCATGGAAAAATAA+AGG - chr3_1:19540817-19540836 Msa0351950:intron 30.0%
TATATTACAATCTGGTTACC+AGG - chr3_1:19540901-19540920 Msa0351950:intron 30.0%
ATATTACAATCTGGTTACCA+GGG - chr3_1:19540902-19540921 Msa0351950:intron 30.0%
GTTTAAAAAATTGCTCTCTG+AGG - chr3_1:19540957-19540976 Msa0351950:intron 30.0%
ATTACTTGTAAGGTTGTAAC+TGG + chr3_1:19540991-19541010 None:intergenic 30.0%
! CTGATTTTGCAAAACCAATA+CGG + chr3_1:19541214-19541233 None:intergenic 30.0%
TAGTAATAATGAGGCTTAGT+AGG + chr3_1:19541265-19541284 None:intergenic 30.0%
!! ACTTTGTATTCGTGTTTTGA+TGG + chr3_1:19541437-19541456 None:intergenic 30.0%
CAAAGTCAAGCTATTCTAAA+TGG - chr3_1:19541451-19541470 Msa0351950:intron 30.0%
! AGCTATTCTAAATGGTGTTA+AGG - chr3_1:19541459-19541478 Msa0351950:intron 30.0%
! TAAAGCTTCTCTCTTTTGTT+GGG - chr3_1:19541586-19541605 Msa0351950:intron 30.0%
!! CCAAATGTGATTTTAACATG+AGG + chr3_1:19541752-19541771 None:intergenic 30.0%
CCTCATGTTAAAATCACATT+TGG - chr3_1:19541749-19541768 Msa0351950:CDS 30.0%
! CATCATTTTACCCTCAAAAT+AGG + chr3_1:19541836-19541855 None:intergenic 30.0%
! CATGTATATAAAAGCATGCT+TGG + chr3_1:19541863-19541882 None:intergenic 30.0%
! TGATCTTGTTATGTAGACTT+TGG - chr3_1:19541920-19541939 Msa0351950:intron 30.0%
! TATATTGTTCAGGCTTTTAC+AGG - chr3_1:19541980-19541999 Msa0351950:intron 30.0%
! ATATTGTTCAGGCTTTTACA+GGG - chr3_1:19541981-19542000 Msa0351950:intron 30.0%
TCATAGAGTCAACTAAAAAG+TGG - chr3_1:19542058-19542077 Msa0351950:intron 30.0%
AATCATTGTTGGTCCATAAA+TGG + chr3_1:19542384-19542403 None:intergenic 30.0%
! TTTTATCCGTGCAAATTTGA+AGG - chr3_1:19542462-19542481 Msa0351950:intron 30.0%
!! ATATTTTCAGGAGATACACT+TGG - chr3_1:19542563-19542582 Msa0351950:intron 30.0%
!! TATTTTCAGGAGATACACTT+GGG - chr3_1:19542564-19542583 Msa0351950:intron 30.0%
! TAATCATATATTTCTGCACC+AGG + chr3_1:19542695-19542714 None:intergenic 30.0%
GTTTAAAGGGTTTATATGCA+GGG - chr3_1:19542762-19542781 Msa0351950:intron 30.0%
TCAAATTAAACGAGAAAGAG+GGG + chr3_1:19542856-19542875 None:intergenic 30.0%
TAGACAATAAATAGTACCCT+AGG - chr3_1:19542898-19542917 Msa0351950:intron 30.0%
TTATGACAACGACAACTTAT+TGG + chr3_1:19542926-19542945 None:intergenic 30.0%
ATGTACCATGCAATTGTTAT+AGG - chr3_1:19543367-19543386 Msa0351950:intron 30.0%
GATGGATATCTAATCCAAAT+TGG - chr3_1:19543438-19543457 Msa0351950:intron 30.0%
GAATTATTAACGTGCCAATT+TGG + chr3_1:19543455-19543474 None:intergenic 30.0%
CACGTTAATAATTCCTTTGA+GGG - chr3_1:19543461-19543480 Msa0351950:intron 30.0%
AAAATTAAGTGGTATCCTGA+TGG + chr3_1:19543727-19543746 None:intergenic 30.0%
! ATGGACTAAAGCTAAATTGA+TGG - chr3_1:19543929-19543948 Msa0351950:intron 30.0%
TGGATGCAATTTACAACATA+TGG - chr3_1:19543992-19544011 Msa0351950:intron 30.0%
GGATGCAATTTACAACATAT+GGG - chr3_1:19543993-19544012 Msa0351950:intron 30.0%
! AATTTACAACATATGGGCTA+AGG - chr3_1:19543999-19544018 Msa0351950:intron 30.0%
!! TTTAATGAAAAAGTGCCCAA+TGG - chr3_1:19544123-19544142 Msa0351950:intron 30.0%
AGAAAAGAAGAAATCTTTGG+AGG - chr3_1:19544176-19544195 Msa0351950:intron 30.0%
! ATATTTTCACGCCAAGTTAT+TGG - chr3_1:19544532-19544551 Msa0351950:five_prime_UTR 30.0%
!!! GTTTCTCACGACCATTTTTT+CGG - chr3_1:19539360-19539379 Msa0351950:three_prime_UTR 35.0%
GTAATTACATGTGTCTGTGT+CGG + chr3_1:19539794-19539813 None:intergenic 35.0%
!!! TTTTTACTGGTGTTGGTATC+AGG - chr3_1:19539838-19539857 Msa0351950:intron 35.0%
!!! TTTTACTGGTGTTGGTATCA+GGG - chr3_1:19539839-19539858 Msa0351950:intron 35.0%
GCGAAATTGTGGATACTTAT+TGG + chr3_1:19540248-19540267 None:intergenic 35.0%
TCAAAATGCAGGTACAGAAA+CGG + chr3_1:19540278-19540297 None:intergenic 35.0%
! GTTTTATGGTCAAACACTGT+CGG + chr3_1:19540366-19540385 None:intergenic 35.0%
! GTTGCGATTTTATGTCTAGA+TGG - chr3_1:19540515-19540534 Msa0351950:CDS 35.0%
TTAGAAATTGTGGTATGAGG+TGG - chr3_1:19540749-19540768 Msa0351950:intron 35.0%
GGTATGAGGTGGAAAATAAA+AGG - chr3_1:19540760-19540779 Msa0351950:intron 35.0%
AAAATAAAGGCCTCTGATGT+CGG - chr3_1:19540830-19540849 Msa0351950:intron 35.0%
! AAAAAATTGCTCTCTGAGGA+AGG - chr3_1:19540961-19540980 Msa0351950:intron 35.0%
! AAAAATTGCTCTCTGAGGAA+GGG - chr3_1:19540962-19540981 Msa0351950:intron 35.0%
AAAGGCCCAAATTACTTGTA+AGG + chr3_1:19541001-19541020 None:intergenic 35.0%
TTGTCACACATACTATCTCT+TGG - chr3_1:19541030-19541049 Msa0351950:CDS 35.0%
! CATGATAACAATGATGGGAA+GGG + chr3_1:19541104-19541123 None:intergenic 35.0%
TCCACCATGATAACAATGAT+GGG + chr3_1:19541109-19541128 None:intergenic 35.0%
ATCCACCATGATAACAATGA+TGG + chr3_1:19541110-19541129 None:intergenic 35.0%
! AAATTTTCAGCTTTCAGCCA+TGG + chr3_1:19541139-19541158 None:intergenic 35.0%
TACGGTCAATTTATGAAGGA+TGG + chr3_1:19541196-19541215 None:intergenic 35.0%
CCAATACGGTCAATTTATGA+AGG + chr3_1:19541200-19541219 None:intergenic 35.0%
CCTTCATAAATTGACCGTAT+TGG - chr3_1:19541197-19541216 Msa0351950:intron 35.0%
ATAATGAGGCTTAGTAGGTT+GGG + chr3_1:19541260-19541279 None:intergenic 35.0%
AATAATGAGGCTTAGTAGGT+TGG + chr3_1:19541261-19541280 None:intergenic 35.0%
GAGTATGCATAACAAGAACA+AGG + chr3_1:19541526-19541545 None:intergenic 35.0%
! CTAAAGCTTCTCTCTTTTGT+TGG - chr3_1:19541585-19541604 Msa0351950:intron 35.0%
ATTTGTCTGTAGAACCAGAA+AGG - chr3_1:19541615-19541634 Msa0351950:intron 35.0%
! TTGGCTGAAAACCTATTTTG+AGG - chr3_1:19541822-19541841 Msa0351950:intron 35.0%
!! TGGCTGAAAACCTATTTTGA+GGG - chr3_1:19541823-19541842 Msa0351950:intron 35.0%
! TATTGTTCAGGCTTTTACAG+GGG - chr3_1:19541982-19542001 Msa0351950:intron 35.0%
!! GTCAACTAAAAAGTGGATTG+AGG - chr3_1:19542065-19542084 Msa0351950:intron 35.0%
AGTTCTACTGCAATGAAGAA+TGG - chr3_1:19542656-19542675 Msa0351950:intron 35.0%
AATGGCATTGCAATAAAACC+TGG - chr3_1:19542674-19542693 Msa0351950:intron 35.0%
GGTTTAAAGGGTTTATATGC+AGG - chr3_1:19542761-19542780 Msa0351950:intron 35.0%
CTACAGATATTTGTCTACAC+TGG - chr3_1:19543229-19543248 Msa0351950:intron 35.0%
ATATTTGTCTACACTGGCAA+GGG - chr3_1:19543235-19543254 Msa0351950:intron 35.0%
CACAACCTATAACAATTGCA+TGG + chr3_1:19543375-19543394 None:intergenic 35.0%
TTGAAAGATGCTACAGAGTA+CGG - chr3_1:19543407-19543426 Msa0351950:intron 35.0%
GCACGTTAATAATTCCTTTG+AGG - chr3_1:19543460-19543479 Msa0351950:intron 35.0%
! TATGTTCAAAGGCATAACAC+TGG + chr3_1:19543519-19543538 None:intergenic 35.0%
TTTCTTCAATGAACGTTGCT+TGG - chr3_1:19543744-19543763 Msa0351950:intron 35.0%
TTGTGTTTAGGTATAACGGT+TGG - chr3_1:19543968-19543987 Msa0351950:intron 35.0%
! AAAGAAGAAATCTTTGGAGG+AGG - chr3_1:19544179-19544198 Msa0351950:intron 35.0%
TAACTAAGTCAAACTTGGTC+TGG - chr3_1:19544349-19544368 Msa0351950:intron 35.0%
AAAAATGGTCGTGAGAAACG+TGG + chr3_1:19539359-19539378 None:intergenic 40.0%
GGAATGCCATGAAGAAATAG+AGG - chr3_1:19539947-19539966 Msa0351950:intron 40.0%
! ACAAGGCCTCTATTTCTTCA+TGG + chr3_1:19539956-19539975 None:intergenic 40.0%
! TGAAGAAATAGAGGCCTTGT+TGG - chr3_1:19539956-19539975 Msa0351950:intron 40.0%
! GTAATCACATGTGTCGATGT+CGG + chr3_1:19540093-19540112 None:intergenic 40.0%
GGTGTATATCAGTCTTACAC+TGG + chr3_1:19540345-19540364 None:intergenic 40.0%
TGCCACATAAGAACATGGAA+TGG - chr3_1:19540585-19540604 Msa0351950:intron 40.0%
GCCACATAAGAACATGGAAT+GGG - chr3_1:19540586-19540605 Msa0351950:intron 40.0%
CCACATAAGAACATGGAATG+GGG - chr3_1:19540587-19540606 Msa0351950:intron 40.0%
CAGTCTTACAATGACATCAG+AGG + chr3_1:19540786-19540805 None:intergenic 40.0%
!! GTTACCAGGGTATTTTGTGT+GGG - chr3_1:19540915-19540934 Msa0351950:intron 40.0%
GGCATTATGCAATACCTATC+AGG - chr3_1:19541051-19541070 Msa0351950:CDS 40.0%
CAAAAAGGACATTGCCTGAT+AGG + chr3_1:19541068-19541087 None:intergenic 40.0%
! ATCAGGCAATGTCCTTTTTG+TGG - chr3_1:19541068-19541087 Msa0351950:CDS 40.0%
GGATGAATGAGACCACAAAA+AGG + chr3_1:19541083-19541102 None:intergenic 40.0%
! CCATGATAACAATGATGGGA+AGG + chr3_1:19541105-19541124 None:intergenic 40.0%
CCTTCCCATCATTGTTATCA+TGG - chr3_1:19541102-19541121 Msa0351950:CDS 40.0%
TCCCATCATTGTTATCATGG+TGG - chr3_1:19541105-19541124 Msa0351950:CDS 40.0%
TTGACATACCTGCCGATATA+TGG - chr3_1:19541157-19541176 Msa0351950:CDS 40.0%
GGTCAATTTATGAAGGATGG+CGG + chr3_1:19541193-19541212 None:intergenic 40.0%
AAGTATGGAGGGAGTTTGTA+TGG - chr3_1:19541362-19541381 Msa0351950:intron 40.0%
AGTATGGAGGGAGTTTGTAT+GGG - chr3_1:19541363-19541382 Msa0351950:intron 40.0%
!!! CGTGTTTTGATGGTATCTAC+CGG + chr3_1:19541427-19541446 None:intergenic 40.0%
!! TGGAAGGTTGATGGATTAAG+AGG - chr3_1:19541663-19541682 Msa0351950:CDS 40.0%
TACACATTCTTGAGTCACTC+AGG - chr3_1:19542198-19542217 Msa0351950:intron 40.0%
ACACATTCTTGAGTCACTCA+GGG - chr3_1:19542199-19542218 Msa0351950:intron 40.0%
TTCAAGGCACAATTACATCC+TGG - chr3_1:19542633-19542652 Msa0351950:intron 40.0%
TATAAAGGGATGTTCCATGC+AGG - chr3_1:19542716-19542735 Msa0351950:intron 40.0%
AGCTCAATATGCAGAACACA+GGG - chr3_1:19542740-19542759 Msa0351950:intron 40.0%
ATGCAGAACACAGGGTTTAA+AGG - chr3_1:19542748-19542767 Msa0351950:intron 40.0%
TGCAGAACACAGGGTTTAAA+GGG - chr3_1:19542749-19542768 Msa0351950:intron 40.0%
AGCCACAACAGTTCACTATT+GGG - chr3_1:19543034-19543053 Msa0351950:intron 40.0%
AACCCAATAGTGAACTGTTG+TGG + chr3_1:19543039-19543058 None:intergenic 40.0%
GATATTTGTCTACACTGGCA+AGG - chr3_1:19543234-19543253 Msa0351950:intron 40.0%
GCGTTGTGTATAATACCATC+AGG + chr3_1:19543277-19543296 None:intergenic 40.0%
AACGCATTGAGTTACAGAAC+TGG - chr3_1:19543292-19543311 Msa0351950:intron 40.0%
TGAAAGATGCTACAGAGTAC+GGG - chr3_1:19543408-19543427 Msa0351950:intron 40.0%
! TAATAATTCCTTTGAGGGCC+TGG - chr3_1:19543466-19543485 Msa0351950:intron 40.0%
AAAACTAGGCTGCAAGTTCA+GGG - chr3_1:19543631-19543650 Msa0351950:intron 40.0%
AAGTTCAGGGTTCAACTTTG+AGG - chr3_1:19543644-19543663 Msa0351950:intron 40.0%
GTTTAGGTATAACGGTTGGT+TGG - chr3_1:19543972-19543991 Msa0351950:intron 40.0%
! TACAACATATGGGCTAAGGA+AGG - chr3_1:19544003-19544022 Msa0351950:intron 40.0%
AAGGAGTTAAGGGGATGTTT+AGG - chr3_1:19544022-19544041 Msa0351950:intron 40.0%
AGGAGTTAAGGGGATGTTTA+GGG - chr3_1:19544023-19544042 Msa0351950:intron 40.0%
!! AATGAAAAAGTGCCCAATGG+TGG - chr3_1:19544126-19544145 Msa0351950:intron 40.0%
ACATTGATCGAACCACCATT+GGG + chr3_1:19544141-19544160 None:intergenic 40.0%
AACATTGATCGAACCACCAT+TGG + chr3_1:19544142-19544161 None:intergenic 40.0%
! AGGAGGCTAGTTAAAAGTTG+TGG - chr3_1:19544196-19544215 Msa0351950:intron 40.0%
CGTTCAGTTTAACTCATGCA+TGG - chr3_1:19544384-19544403 Msa0351950:intron 40.0%
TCTTCACATTACAGCCTCTA+TGG - chr3_1:19544427-19544446 Msa0351950:CDS 40.0%
CAGTGACCAAAAACATGTCT+GGG - chr3_1:19544450-19544469 Msa0351950:CDS 40.0%
! TTCCAACCCAGACATGTTTT+TGG + chr3_1:19544459-19544478 None:intergenic 40.0%
GTTCGGAGCTTGTGATTTAC+TGG + chr3_1:19539337-19539356 None:intergenic 45.0%
TGTAGCACCAACACTTCTGA+TGG - chr3_1:19539742-19539761 Msa0351950:CDS 45.0%
! ACACCTTCCATCAGAAGTGT+TGG + chr3_1:19539752-19539771 None:intergenic 45.0%
GTCGGACATCAGACACATAT+TGG + chr3_1:19540075-19540094 None:intergenic 45.0%
!! ATGAAGCACTGACACTGACA+TGG + chr3_1:19540180-19540199 None:intergenic 45.0%
TGTCAGTGTCAGTGCTTCAT+AGG - chr3_1:19540180-19540199 Msa0351950:intron 45.0%
CCCCATTCCATGTTCTTATG+TGG + chr3_1:19540590-19540609 None:intergenic 45.0%
CATAAGAACATGGAATGGGG+TGG - chr3_1:19540590-19540609 Msa0351950:intron 45.0%
!! GGTTACCAGGGTATTTTGTG+TGG - chr3_1:19540914-19540933 Msa0351950:intron 45.0%
ACTTCCCACACAAAATACCC+TGG + chr3_1:19540922-19540941 None:intergenic 45.0%
!! AGGGTATTTTGTGTGGGAAG+TGG - chr3_1:19540921-19540940 Msa0351950:intron 45.0%
GGAGCAGTGTTGTCAGATAT+CGG + chr3_1:19541239-19541258 None:intergenic 45.0%
GTATGGAGGGAGTTTGTATG+GGG - chr3_1:19541364-19541383 Msa0351950:intron 45.0%
CCATCTGCAATATGCCTTTC+TGG + chr3_1:19541632-19541651 None:intergenic 45.0%
! CCAGAAAGGCATATTGCAGA+TGG - chr3_1:19541629-19541648 Msa0351950:intron 45.0%
AAGGCATATTGCAGATGGTG+CGG - chr3_1:19541634-19541653 Msa0351950:intron 45.0%
!! TTTTACAGGGGTGTAGTACC+TGG - chr3_1:19541994-19542013 Msa0351950:intron 45.0%
! GCGACTGGTGCAACATATTT+TGG - chr3_1:19542033-19542052 Msa0351950:intron 45.0%
CATTTCATTGCTGGAGCTGT+TGG - chr3_1:19542120-19542139 Msa0351950:CDS 45.0%
! GAGCTGTTGGTAAGCTGATT+TGG - chr3_1:19542133-19542152 Msa0351950:CDS 45.0%
CACATTCTTGAGTCACTCAG+GGG - chr3_1:19542200-19542219 Msa0351950:intron 45.0%
TACGTAATGCAATGCTGCTG+TGG - chr3_1:19542430-19542449 Msa0351950:intron 45.0%
CTTCATTGCAGTAGAACTCC+AGG + chr3_1:19542654-19542673 None:intergenic 45.0%
CAGCTCAATATGCAGAACAC+AGG - chr3_1:19542739-19542758 Msa0351950:intron 45.0%
! CGACAACTTATTGGTGCCTA+GGG + chr3_1:19542917-19542936 None:intergenic 45.0%
! ACGACAACTTATTGGTGCCT+AGG + chr3_1:19542918-19542937 None:intergenic 45.0%
GAGCCACAACAGTTCACTAT+TGG - chr3_1:19543033-19543052 Msa0351950:intron 45.0%
AATACCATCAGGCCAGCAAA+TGG + chr3_1:19543266-19543285 None:intergenic 45.0%
TGCATATCTCACCACTCCTT+TGG - chr3_1:19543600-19543619 Msa0351950:intron 45.0%
!!! CTAGTTTTGACGACGTCCAA+AGG + chr3_1:19543619-19543638 None:intergenic 45.0%
CTTTGGACGTCGTCAAAACT+AGG - chr3_1:19543617-19543636 Msa0351950:intron 45.0%
CAAAACTAGGCTGCAAGTTC+AGG - chr3_1:19543630-19543649 Msa0351950:intron 45.0%
ATACATGTGTACCTGCCATC+AGG - chr3_1:19543709-19543728 Msa0351950:intron 45.0%
TTAAGTGGTATCCTGATGGC+AGG + chr3_1:19543723-19543742 None:intergenic 45.0%
AACGTTGCTTGGAACATGTC+TGG - chr3_1:19543755-19543774 Msa0351950:intron 45.0%
! ATGGGCTAAGGAAGGAGTTA+AGG - chr3_1:19544011-19544030 Msa0351950:intron 45.0%
TGGGCTAAGGAAGGAGTTAA+GGG - chr3_1:19544012-19544031 Msa0351950:intron 45.0%
GGAGTTAAGGGGATGTTTAG+GGG - chr3_1:19544024-19544043 Msa0351950:intron 45.0%
GAATGTACCACGCAATTCTC+GGG + chr3_1:19544056-19544075 None:intergenic 45.0%
GGAATGTACCACGCAATTCT+CGG + chr3_1:19544057-19544076 None:intergenic 45.0%
GAGAATTGCGTGGTACATTC+CGG - chr3_1:19544056-19544075 Msa0351950:intron 45.0%
GAGAAATTCCACAGCCATGA+AGG + chr3_1:19544094-19544113 None:intergenic 45.0%
!!! GTTTTTGGTCACTGCCATAG+AGG + chr3_1:19544444-19544463 None:intergenic 45.0%
GCAGTGACCAAAAACATGTC+TGG - chr3_1:19544449-19544468 Msa0351950:CDS 45.0%
GACCAAAAACATGTCTGGGT+TGG - chr3_1:19544454-19544473 Msa0351950:CDS 45.0%
!! AAATATATGATTATTATAAA+GGG - chr3_1:19542702-19542721 Msa0351950:intron 5.0%
TGGTCGTGAGAAACGTGGTT+CGG + chr3_1:19539354-19539373 None:intergenic 50.0%
GCACCAACACTTCTGATGGA+AGG - chr3_1:19539746-19539765 Msa0351950:CDS 50.0%
GTTGGTATCAGGGTCATGTC+TGG - chr3_1:19539849-19539868 Msa0351950:intron 50.0%
ACTGACACTGACATGGACAC+CGG + chr3_1:19540173-19540192 None:intergenic 50.0%
ACGGAGAGGTAGCGAAATTG+TGG + chr3_1:19540259-19540278 None:intergenic 50.0%
ATGCAGGTACAGAAACGGAG+AGG + chr3_1:19540273-19540292 None:intergenic 50.0%
TATGCTACTGCTGCGACTCA+TGG + chr3_1:19540479-19540498 None:intergenic 50.0%
TGAGTCGCAGCAGTAGCATA+CGG - chr3_1:19540479-19540498 Msa0351950:intron 50.0%
CAGTCTTACACCGACATCAG+AGG + chr3_1:19540843-19540862 None:intergenic 50.0%
!! TCATGGTGGATAGCAGACCA+TGG - chr3_1:19541119-19541138 Msa0351950:CDS 50.0%
CCACAATGCCATATATCGGC+AGG + chr3_1:19541168-19541187 None:intergenic 50.0%
CCTGCCGATATATGGCATTG+TGG - chr3_1:19541165-19541184 Msa0351950:CDS 50.0%
GGCGCCACAATGCCATATAT+CGG + chr3_1:19541172-19541191 None:intergenic 50.0%
GTTTGTATGGGGAGCTGTTG+CGG - chr3_1:19541375-19541394 Msa0351950:intron 50.0%
TTTGTATGGGGAGCTGTTGC+GGG - chr3_1:19541376-19541395 Msa0351950:intron 50.0%
TGGGGAAGGAATGATGCATC+CGG - chr3_1:19541405-19541424 Msa0351950:intron 50.0%
!! GGTGTAGTACCTGGTGTTAC+TGG - chr3_1:19542003-19542022 Msa0351950:intron 50.0%
GAGGATTCACATCCTAGCCT+TGG - chr3_1:19542084-19542103 Msa0351950:intron 50.0%
!! GATTCACATCCTAGCCTTGG+TGG - chr3_1:19542087-19542106 Msa0351950:intron 50.0%
CAGCAATGAAATGTGCCCAG+TGG + chr3_1:19542113-19542132 None:intergenic 50.0%
CACTGGGCACATTTCATTGC+TGG - chr3_1:19542111-19542130 Msa0351950:CDS 50.0%
! CGCTGCTTTATCACTTCGCA+TGG + chr3_1:19542605-19542624 None:intergenic 50.0%
AAGCAGCGCATGCAAGTTCA+AGG - chr3_1:19542617-19542636 Msa0351950:intron 50.0%
TGCATATTGAGCTGCCTGCA+TGG + chr3_1:19542733-19542752 None:intergenic 50.0%
GTGAACTGTTGTGGCTCTTG+AGG + chr3_1:19543030-19543049 None:intergenic 50.0%
GCAAGGGATGTACCATTTGC+TGG - chr3_1:19543251-19543270 Msa0351950:intron 50.0%
! TGTACCATTTGCTGGCCTGA+TGG - chr3_1:19543259-19543278 Msa0351950:intron 50.0%
!! TTCCTTTGAGGGCCTGGTTT+TGG - chr3_1:19543472-19543491 Msa0351950:intron 50.0%
!! TCCTTTGAGGGCCTGGTTTT+GGG - chr3_1:19543473-19543492 Msa0351950:intron 50.0%
CAGCTAATCCTCCCAAAACC+AGG + chr3_1:19543487-19543506 None:intergenic 50.0%
!!! CTGGTTTTGGGAGGATTAGC+TGG - chr3_1:19543485-19543504 Msa0351950:intron 50.0%
!!! GTTTTGGGAGGATTAGCTGG+TGG - chr3_1:19543488-19543507 Msa0351950:intron 50.0%
TTTGACGACGTCCAAAGGAG+TGG + chr3_1:19543614-19543633 None:intergenic 50.0%
GGGCTAAGGAAGGAGTTAAG+GGG - chr3_1:19544013-19544032 Msa0351950:intron 50.0%
!! ATGAAGGTAAGCGCTGAAGC+CGG + chr3_1:19544078-19544097 None:intergenic 50.0%
ATGGACACCGGACACTGACA+TGG + chr3_1:19540161-19540180 None:intergenic 55.0%
! GAGCTGTTGCGGGTGCTTTT+GGG - chr3_1:19541386-19541405 Msa0351950:intron 55.0%
! AGCTGTTGCGGGTGCTTTTG+GGG - chr3_1:19541387-19541406 Msa0351950:intron 55.0%
CGGTCTGTCTGGAAGGTTGA+TGG - chr3_1:19541654-19541673 Msa0351950:CDS 55.0%
GCAAGAGAGCCAGTAACACC+AGG + chr3_1:19542015-19542034 None:intergenic 55.0%
!! GTTACTGGCTCTCTTGCGAC+TGG - chr3_1:19542018-19542037 Msa0351950:intron 55.0%
CAGAGTACGGGAAGCGAAGA+TGG - chr3_1:19543420-19543439 Msa0351950:intron 55.0%
TCCCAAAACCAGGCCCTCAA+AGG + chr3_1:19543477-19543496 None:intergenic 55.0%
!!! TTTGAGGGCCTGGTTTTGGG+AGG - chr3_1:19543476-19543495 Msa0351950:intron 55.0%
GGCTTCAGCGCTTACCTTCA+TGG - chr3_1:19544077-19544096 Msa0351950:intron 55.0%
AGCGCTTACCTTCATGGCTG+TGG - chr3_1:19544083-19544102 Msa0351950:intron 55.0%
CCGGACACTGACATGGACAC+CGG + chr3_1:19540154-19540173 None:intergenic 60.0%
CCGGTGTCCATGTCAGTGTC+CGG - chr3_1:19540151-19540170 Msa0351950:CDS 60.0%
! GGAGCTGTTGCGGGTGCTTT+TGG - chr3_1:19541385-19541404 Msa0351950:intron 60.0%
!! GTTGCGGGTGCTTTTGGGGA+AGG - chr3_1:19541391-19541410 Msa0351950:intron 60.0%
TGCAGATGGTGCGGTCTGTC+TGG - chr3_1:19541643-19541662 Msa0351950:intron 60.0%
GATGGTGCGGTCTGTCTGGA+AGG - chr3_1:19541647-19541666 Msa0351950:CDS 60.0%
!! ATCCTAGCCTTGGTGGCCAC+TGG - chr3_1:19542094-19542113 Msa0351950:intron 60.0%
!! TCCTAGCCTTGGTGGCCACT+GGG - chr3_1:19542095-19542114 Msa0351950:intron 60.0%
AATGTGCCCAGTGGCCACCA+AGG + chr3_1:19542104-19542123 None:intergenic 60.0%
GTAGCGTCCCGAGAATTGCG+TGG - chr3_1:19544046-19544065 Msa0351950:intron 60.0%
GGAATGGGGTGGCAATGCCC+AGG - chr3_1:19540601-19540620 Msa0351950:intron 65.0%
GCCCAGTGGCCACCAAGGCT+AGG + chr3_1:19542099-19542118 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 19539219 19544568 19539219 ID=Msa0351950;Name=Msa0351950
chr3_1 mRNA 19539219 19544568 19539219 ID=Msa0351950-mRNA-1;Parent=Msa0351950;Name=Msa0351950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=93|1|1|1|1|1|9|359|358
chr3_1 exon 19539219 19539809 19539219 ID=Msa0351950-mRNA-1:exon:4574;Parent=Msa0351950-mRNA-1
chr3_1 exon 19540122 19540194 19540122 ID=Msa0351950-mRNA-1:exon:4573;Parent=Msa0351950-mRNA-1
chr3_1 exon 19540278 19540398 19540278 ID=Msa0351950-mRNA-1:exon:4572;Parent=Msa0351950-mRNA-1
chr3_1 exon 19540507 19540552 19540507 ID=Msa0351950-mRNA-1:exon:4571;Parent=Msa0351950-mRNA-1
chr3_1 exon 19541004 19541214 19541004 ID=Msa0351950-mRNA-1:exon:4570;Parent=Msa0351950-mRNA-1
chr3_1 exon 19541646 19541795 19541646 ID=Msa0351950-mRNA-1:exon:4569;Parent=Msa0351950-mRNA-1
chr3_1 exon 19542103 19542160 19542103 ID=Msa0351950-mRNA-1:exon:4568;Parent=Msa0351950-mRNA-1
chr3_1 exon 19542307 19542422 19542307 ID=Msa0351950-mRNA-1:exon:4567;Parent=Msa0351950-mRNA-1
chr3_1 exon 19544406 19544568 19544406 ID=Msa0351950-mRNA-1:exon:4566;Parent=Msa0351950-mRNA-1
chr3_1 five_prime_UTR 19544476 19544568 19544476 ID=Msa0351950-mRNA-1:five_prime_utr;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19544406 19544475 19544406 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19542307 19542422 19542307 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19542103 19542160 19542103 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19541646 19541795 19541646 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19541004 19541214 19541004 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19540507 19540552 19540507 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19540278 19540398 19540278 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19540122 19540194 19540122 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 CDS 19539578 19539809 19539578 ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1
chr3_1 three_prime_UTR 19539219 19539577 19539219 ID=Msa0351950-mRNA-1:three_prime_utr;Parent=Msa0351950-mRNA-1
Gene Sequence

>Msa0351950

ATGGCAGTTCAAAGCTCTATTTCCAGTAAATCACAAGCTCCGAACCACGTTTCTCACGACCATTTTTTCGTATGGAGGGAGTTTGTATGGGGAGCTGTTGCGGGTGCTTTTGGGGAAGGAATGATGCATCCGGTAGATACCATCAAAACACGAATACAAAGTCAAGCTATTCTAAATGGTGTTAAGAACCAGAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGAAGGTTGATGGATTAAGAGGCTTTTACAGGGGTGTAGTACCTGGTGTTACTGGCTCTCTTGCGACTGGTGCAACATATTTTGGTGTCATAGAGTCAACTAAAAAGTGGATTGAGGATTCACATCCTAGCCTTGGTGGCCACTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGGTCTGTAGTATACGTTCCATGCGAAGTGATAAAGCAGCGCATGCAAGTTCAAGGCACAATTACATCCTGGAGTTCTACTGCAATGAAGAATGGCATTGCAATAAAACCTGGTGCAGAAATATATGATTATTATAAAGGGATGTTCCATGCAGGCAGCTCAATATGCAGAACACAGGGTTTAAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTACCATTTGCTGGCCTGATGGTTGTGTTCTATGAAGCTTTGAAAGATGCTACAGAGTACGGGAAGCGAAGATGGATATCTAATCCAAATTGGCACGTTAATAATTCCTTTGAGGGCCTGGTTTTGGGAGGATTAGCTGGTGGTCTCAGTGCATATCTCACCACTCCTTTGGACGTCGTCAAAACTAGGCTGCAAGTTCAGGGTTCAACTTTGAGGTATAACGGTTGGTTGGATGCAATTTACAACATATGGGCTAAGGAAGGAGTTAAGGGGATGTTTAGGGGTAGCGTCCCGAGAATTGCGTGGTACATTCCGGCTTCAGCGCTTACCTTCATGGCTGTGGAATTTCTCAGAGAAAATTTTAATGAAAAAGTGCCCAATGGTGGTTCGATCAATGTTGCTAGAGTATCAGTAGAAAAGAAGAAATCTTTGGAGGAGGCTAGTTAA

Protein sequence

>Msa0351950

MAVQSSISSKSQAPNHVSHDHFFVWREFVWGAVAGAFGEGMMHPVDTIKTRIQSQAILNGVKNQKGILQMVRSVWKVDGLRGFYRGVVPGVTGSLATGATYFGVIESTKKWIEDSHPSLGGHWAHFIAGAVGDTLGSVVYVPCEVIKQRMQVQGTITSWSSTAMKNGIAIKPGAEIYDYYKGMFHAGSSICRTQGLKGLYAGYLSTLARDVPFAGLMVVFYEALKDATEYGKRRWISNPNWHVNNSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYNGWLDAIYNIWAKEGVKGMFRGSVPRIAWYIPASALTFMAVEFLRENFNEKVPNGGSINVARVSVEKKKSLEEAS*