Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0351950 | XP_003598987.1 | 98.045 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 0.0 | 724 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0351950 | sp|Q94AG6|SAMC1_ARATH | 32.635 | 334 | 170 | 7 | 5 | 337 | 38 | 317 | 3.95e-46 | 163 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0351950 | G7IZA2 | 98.045 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 0.0 | 724 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0280430 | Msa0351950 | 0.809967 | 1.456098e-50 | -8.615850e-47 |
Msa0291520 | Msa0351950 | 0.814547 | 1.457108e-51 | -8.615850e-47 |
Msa0351950 | Msa0376690 | 0.805286 | 1.436590e-49 | -8.615850e-47 |
Msa0351950 | Msa0471590 | 0.806733 | 7.125734e-50 | -8.615850e-47 |
Msa0351950 | Msa0581070 | 0.801902 | 7.233169e-49 | -8.615850e-47 |
Msa0351950 | Msa0610390 | 0.805060 | 1.601407e-49 | -8.615850e-47 |
Msa0351950 | Msa0687630 | 0.807108 | 5.937283e-50 | -8.615850e-47 |
Msa0351950 | Msa0707390 | 0.803117 | 4.061923e-49 | -8.615850e-47 |
Msa0351950 | Msa0750920 | 0.801701 | 7.951418e-49 | -8.615850e-47 |
Msa0351950 | Msa1179980 | 0.801723 | 7.871214e-49 | -8.615850e-47 |
Msa0351950 | Msa1184370 | 0.819283 | 1.259871e-52 | -8.615850e-47 |
Msa0351950 | Msa1227690 | 0.821714 | 3.486352e-53 | -8.615850e-47 |
Msa0351950 | Msa1294840 | 0.801653 | 8.134240e-49 | -8.615850e-47 |
Msa0351950 | Msa1335940 | 0.806228 | 9.106858e-50 | -8.615850e-47 |
Msa0351950 | Msa1365150 | 0.801226 | 9.948130e-49 | -8.615850e-47 |
Msa0351950 | Msa1404190 | 0.816044 | 6.774354e-52 | -8.615850e-47 |
Msa0351950 | Msa1438640 | 0.821581 | 3.741926e-53 | -8.615850e-47 |
Msa0351950 | Msa1442850 | 0.801607 | 8.315127e-49 | -8.615850e-47 |
Msa0351950 | Msa1465080 | 0.803716 | 3.052489e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0351950 | MtrunA17_Chr3g0086811 | 98.045 | 358 | 7 | 0 | 1 | 358 | 1 | 358 | 0.0 | 724 |
Msa0351950 | MtrunA17_Chr1g0201361 | 31.915 | 329 | 173 | 5 | 9 | 336 | 31 | 309 | 5.03e-45 | 157 |
Msa0351950 | MtrunA17_Chr8g0386871 | 31.818 | 330 | 175 | 7 | 8 | 332 | 304 | 588 | 6.41e-42 | 154 |
Msa0351950 | MtrunA17_Chr8g0383321 | 31.715 | 309 | 161 | 5 | 29 | 337 | 53 | 311 | 1.22e-41 | 148 |
Msa0351950 | MtrunA17_Chr1g0200171 | 29.338 | 317 | 166 | 10 | 24 | 333 | 521 | 786 | 7.57e-34 | 132 |
Msa0351950 | MtrunA17_Chr6g0463351 | 33.025 | 324 | 157 | 10 | 42 | 356 | 81 | 353 | 8.46e-34 | 128 |
Msa0351950 | MtrunA17_Chr5g0431531 | 29.573 | 328 | 192 | 6 | 18 | 338 | 29 | 324 | 1.07e-33 | 127 |
Msa0351950 | MtrunA17_Chr2g0296061 | 28.704 | 324 | 181 | 7 | 31 | 326 | 18 | 319 | 1.27e-29 | 116 |
Msa0351950 | MtrunA17_Chr2g0296061 | 29.082 | 196 | 124 | 6 | 128 | 321 | 17 | 199 | 2.92e-13 | 70.1 |
Msa0351950 | MtrunA17_Chr2g0296061 | 24.138 | 232 | 143 | 6 | 8 | 226 | 111 | 322 | 1.44e-11 | 64.7 |
Msa0351950 | MtrunA17_Chr3g0131501 | 27.545 | 334 | 199 | 9 | 6 | 332 | 184 | 481 | 1.49e-29 | 118 |
Msa0351950 | MtrunA17_Chr8g0366791 | 30.380 | 316 | 185 | 11 | 24 | 329 | 5 | 295 | 1.24e-28 | 112 |
Msa0351950 | MtrunA17_Chr8g0366791 | 28.111 | 217 | 118 | 6 | 24 | 227 | 105 | 296 | 2.56e-13 | 69.7 |
Msa0351950 | MtrunA17_Chr8g0366791 | 28.037 | 214 | 120 | 7 | 128 | 331 | 11 | 200 | 6.50e-11 | 62.8 |
Msa0351950 | MtrunA17_Chr4g0067231 | 28.221 | 326 | 180 | 10 | 31 | 325 | 17 | 319 | 6.34e-28 | 111 |
Msa0351950 | MtrunA17_Chr4g0067231 | 29.744 | 195 | 126 | 3 | 128 | 321 | 16 | 200 | 2.14e-14 | 73.2 |
Msa0351950 | MtrunA17_Chr4g0067231 | 24.255 | 235 | 137 | 7 | 8 | 226 | 114 | 323 | 3.77e-11 | 63.5 |
Msa0351950 | MtrunA17_Chr7g0269701 | 27.044 | 318 | 191 | 9 | 31 | 337 | 25 | 312 | 2.24e-27 | 110 |
Msa0351950 | MtrunA17_Chr7g0269701 | 24.510 | 204 | 128 | 4 | 43 | 243 | 138 | 318 | 2.61e-12 | 67.0 |
Msa0351950 | MtrunA17_Chr5g0411411 | 29.283 | 321 | 182 | 12 | 24 | 329 | 5 | 295 | 2.54e-27 | 109 |
Msa0351950 | MtrunA17_Chr5g0411411 | 27.602 | 221 | 122 | 6 | 20 | 227 | 101 | 296 | 4.55e-12 | 66.2 |
Msa0351950 | MtrunA17_Chr8g0385571 | 26.888 | 331 | 205 | 8 | 6 | 332 | 206 | 503 | 6.76e-27 | 111 |
Msa0351950 | MtrunA17_Chr7g0240341 | 26.562 | 320 | 187 | 11 | 27 | 329 | 24 | 312 | 6.74e-25 | 103 |
Msa0351950 | MtrunA17_Chr7g0240341 | 23.585 | 212 | 142 | 2 | 15 | 226 | 121 | 312 | 8.58e-14 | 71.2 |
Msa0351950 | MtrunA17_Chr7g0240341 | 23.629 | 237 | 159 | 4 | 104 | 337 | 4 | 221 | 2.60e-12 | 67.0 |
Msa0351950 | MtrunA17_Chr8g0372531 | 26.712 | 292 | 186 | 7 | 42 | 325 | 28 | 299 | 1.84e-24 | 101 |
Msa0351950 | MtrunA17_Chr8g0372531 | 31.250 | 192 | 103 | 5 | 142 | 330 | 30 | 195 | 6.10e-15 | 74.7 |
Msa0351950 | MtrunA17_Chr8g0372531 | 25.123 | 203 | 144 | 4 | 31 | 233 | 116 | 310 | 1.49e-13 | 70.5 |
Msa0351950 | MtrunA17_Chr8g0347451 | 23.582 | 335 | 197 | 8 | 24 | 329 | 47 | 351 | 9.48e-24 | 100 |
Msa0351950 | MtrunA17_Chr8g0347451 | 25.561 | 223 | 143 | 4 | 118 | 338 | 43 | 244 | 3.07e-12 | 67.0 |
Msa0351950 | MtrunA17_Chr8g0347451 | 35.556 | 90 | 57 | 1 | 237 | 325 | 38 | 127 | 7.73e-11 | 62.8 |
Msa0351950 | MtrunA17_Chr5g0396801 | 24.566 | 346 | 214 | 8 | 5 | 329 | 17 | 336 | 1.84e-23 | 99.8 |
Msa0351950 | MtrunA17_Chr5g0396801 | 25.116 | 215 | 138 | 4 | 126 | 338 | 38 | 231 | 1.29e-11 | 65.1 |
Msa0351950 | MtrunA17_Chr7g0252401 | 25.625 | 320 | 191 | 9 | 21 | 332 | 200 | 480 | 5.16e-23 | 99.8 |
Msa0351950 | MtrunA17_Chr4g0028531 | 27.365 | 296 | 183 | 7 | 29 | 319 | 23 | 291 | 1.44e-22 | 96.7 |
Msa0351950 | MtrunA17_Chr1g0195101 | 27.181 | 298 | 170 | 10 | 44 | 327 | 35 | 299 | 1.73e-22 | 96.3 |
Msa0351950 | MtrunA17_Chr3g0135861 | 25.846 | 325 | 211 | 8 | 15 | 328 | 21 | 326 | 1.83e-21 | 94.0 |
Msa0351950 | MtrunA17_Chr4g0063561 | 25.574 | 305 | 187 | 7 | 25 | 325 | 120 | 388 | 2.47e-21 | 94.4 |
Msa0351950 | MtrunA17_Chr4g0063561 | 25.455 | 220 | 125 | 6 | 116 | 333 | 117 | 299 | 8.63e-11 | 62.8 |
Msa0351950 | MtrunA17_Chr3g0137941 | 24.359 | 312 | 188 | 7 | 26 | 329 | 120 | 391 | 4.92e-21 | 93.6 |
Msa0351950 | MtrunA17_Chr3g0137941 | 28.194 | 227 | 123 | 7 | 109 | 333 | 109 | 297 | 2.92e-13 | 70.5 |
Msa0351950 | MtrunA17_Chr1g0149111 | 25.407 | 307 | 185 | 8 | 25 | 325 | 136 | 404 | 1.06e-20 | 92.8 |
Msa0351950 | MtrunA17_Chr1g0149111 | 32.432 | 148 | 88 | 4 | 188 | 333 | 177 | 314 | 5.26e-13 | 69.7 |
Msa0351950 | MtrunA17_Chr1g0149111 | 27.136 | 199 | 120 | 6 | 28 | 225 | 233 | 407 | 1.05e-11 | 65.9 |
Msa0351950 | MtrunA17_Chr4g0046981 | 24.104 | 307 | 208 | 5 | 25 | 326 | 9 | 295 | 1.08e-20 | 91.3 |
Msa0351950 | MtrunA17_Chr4g0046981 | 22.831 | 219 | 138 | 4 | 123 | 335 | 9 | 202 | 8.23e-12 | 65.5 |
Msa0351950 | MtrunA17_Chr6g0488081 | 24.545 | 330 | 218 | 9 | 20 | 342 | 10 | 315 | 4.33e-20 | 89.7 |
Msa0351950 | MtrunA17_Chr5g0423111 | 25.333 | 300 | 191 | 9 | 44 | 336 | 37 | 310 | 6.72e-20 | 89.7 |
Msa0351950 | MtrunA17_Chr5g0423111 | 25.405 | 185 | 118 | 4 | 43 | 224 | 134 | 301 | 2.89e-11 | 63.9 |
Msa0351950 | MtrunA17_Chr4g0004571 | 29.393 | 313 | 187 | 9 | 26 | 334 | 14 | 296 | 1.17e-19 | 88.2 |
Msa0351950 | MtrunA17_Chr6g0455381 | 25.321 | 312 | 171 | 11 | 42 | 329 | 31 | 304 | 6.08e-18 | 83.6 |
Msa0351950 | MtrunA17_Chr2g0293621 | 27.152 | 302 | 183 | 8 | 20 | 309 | 21 | 297 | 1.19e-17 | 82.8 |
Msa0351950 | MtrunA17_Chr7g0219891 | 27.027 | 296 | 146 | 14 | 42 | 309 | 35 | 288 | 1.55e-16 | 79.3 |
Msa0351950 | MtrunA17_Chr3g0103681 | 22.769 | 325 | 212 | 8 | 14 | 331 | 6 | 298 | 2.36e-16 | 78.6 |
Msa0351950 | MtrunA17_Chr4g0006851 | 23.711 | 291 | 178 | 7 | 44 | 329 | 105 | 356 | 2.80e-16 | 79.3 |
Msa0351950 | MtrunA17_Chr7g0242311 | 22.222 | 288 | 184 | 6 | 44 | 328 | 103 | 353 | 4.59e-16 | 78.6 |
Msa0351950 | MtrunA17_Chr4g0008061 | 24.351 | 308 | 192 | 9 | 28 | 325 | 15 | 291 | 8.84e-16 | 77.0 |
Msa0351950 | MtrunA17_Chr4g0000261 | 25.321 | 312 | 193 | 9 | 26 | 325 | 64 | 347 | 1.64e-15 | 77.0 |
Msa0351950 | MtrunA17_Chr5g0436041 | 24.611 | 321 | 198 | 8 | 27 | 333 | 33 | 323 | 3.32e-15 | 75.5 |
Msa0351950 | MtrunA17_Chr3g0135801 | 27.638 | 199 | 123 | 4 | 28 | 225 | 141 | 319 | 1.28e-14 | 73.9 |
Msa0351950 | MtrunA17_Chr2g0331771 | 28.125 | 288 | 169 | 10 | 24 | 305 | 152 | 407 | 2.44e-14 | 73.9 |
Msa0351950 | MtrunA17_Chr7g0241521 | 22.697 | 304 | 202 | 8 | 28 | 325 | 17 | 293 | 4.68e-14 | 72.0 |
Msa0351950 | MtrunA17_Chr3g0133111 | 23.373 | 338 | 200 | 10 | 26 | 333 | 4 | 312 | 4.88e-14 | 72.0 |
Msa0351950 | MtrunA17_Chr3g0133111 | 25.000 | 204 | 135 | 4 | 24 | 225 | 120 | 307 | 6.75e-11 | 62.8 |
Msa0351950 | MtrunA17_Chr3g0115801 | 21.474 | 312 | 201 | 10 | 31 | 328 | 119 | 400 | 2.52e-12 | 67.8 |
Msa0351950 | MtrunA17_Chr8g0382201 | 22.508 | 311 | 199 | 9 | 31 | 328 | 198 | 479 | 2.78e-12 | 67.8 |
Msa0351950 | MtrunA17_Chr8g0343381 | 25.641 | 273 | 160 | 6 | 28 | 276 | 33 | 286 | 2.91e-12 | 67.0 |
Msa0351950 | MtrunA17_Chr7g0275411 | 21.277 | 329 | 204 | 9 | 41 | 334 | 30 | 338 | 6.38e-12 | 65.9 |
Msa0351950 | MtrunA17_Chr3g0136041 | 22.701 | 348 | 233 | 7 | 4 | 329 | 8 | 341 | 8.47e-12 | 65.9 |
Msa0351950 | MtrunA17_Chr3g0126331 | 24.653 | 288 | 176 | 10 | 65 | 334 | 126 | 390 | 9.53e-12 | 65.9 |
Msa0351950 | MtrunA17_Chr1g0196921 | 22.517 | 302 | 194 | 10 | 15 | 308 | 5 | 274 | 2.25e-11 | 63.9 |
Msa0351950 | MtrunA17_Chr1g0196921 | 30.682 | 176 | 87 | 7 | 142 | 310 | 30 | 177 | 2.61e-11 | 63.9 |
Msa0351950 | MtrunA17_Chr7g0251981 | 25.862 | 290 | 155 | 13 | 35 | 308 | 85 | 330 | 7.07e-11 | 63.2 |
Msa0351950 | MtrunA17_Chr8g0385891 | 24.739 | 287 | 162 | 12 | 35 | 308 | 76 | 321 | 8.50e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0351950 | AT1G74240.1 | 69.252 | 361 | 99 | 3 | 1 | 353 | 1 | 357 | 5.99e-170 | 478 |
Msa0351950 | AT1G74240.2 | 71.565 | 313 | 85 | 2 | 41 | 353 | 1 | 309 | 1.43e-150 | 427 |
Msa0351950 | AT4G39460.2 | 32.635 | 334 | 170 | 7 | 5 | 337 | 38 | 317 | 4.01e-47 | 163 |
Msa0351950 | AT4G39460.1 | 32.635 | 334 | 170 | 7 | 5 | 337 | 38 | 317 | 4.01e-47 | 163 |
Msa0351950 | AT4G39460.3 | 32.635 | 334 | 170 | 7 | 5 | 337 | 38 | 317 | 4.01e-47 | 163 |
Msa0351950 | AT1G34065.2 | 31.515 | 330 | 173 | 6 | 5 | 334 | 55 | 331 | 1.56e-44 | 156 |
Msa0351950 | AT1G34065.1 | 31.515 | 330 | 173 | 6 | 5 | 334 | 62 | 338 | 2.00e-44 | 156 |
Msa0351950 | AT2G26360.1 | 29.870 | 308 | 170 | 6 | 24 | 329 | 111 | 374 | 2.29e-37 | 139 |
Msa0351950 | AT4G11440.1 | 29.904 | 311 | 180 | 5 | 22 | 328 | 324 | 600 | 1.37e-35 | 137 |
Msa0351950 | AT4G11440.2 | 29.904 | 311 | 180 | 5 | 22 | 328 | 324 | 600 | 1.37e-35 | 137 |
Msa0351950 | AT2G30160.1 | 30.599 | 317 | 180 | 8 | 25 | 333 | 39 | 323 | 1.95e-31 | 121 |
Msa0351950 | AT1G07030.1 | 29.155 | 343 | 194 | 10 | 4 | 332 | 13 | 320 | 2.54e-31 | 121 |
Msa0351950 | AT2G35800.1 | 27.097 | 310 | 175 | 7 | 24 | 329 | 541 | 803 | 3.11e-30 | 122 |
Msa0351950 | AT5G46800.2 | 30.599 | 317 | 190 | 9 | 25 | 332 | 5 | 300 | 3.85e-30 | 117 |
Msa0351950 | AT5G46800.3 | 30.599 | 317 | 190 | 9 | 25 | 332 | 5 | 300 | 3.85e-30 | 117 |
Msa0351950 | AT5G46800.1 | 30.599 | 317 | 190 | 9 | 25 | 332 | 5 | 300 | 3.85e-30 | 117 |
Msa0351950 | AT1G25380.1 | 28.086 | 324 | 189 | 10 | 44 | 354 | 37 | 329 | 3.08e-27 | 110 |
Msa0351950 | AT1G25380.1 | 25.789 | 190 | 110 | 5 | 43 | 224 | 136 | 302 | 8.43e-13 | 69.3 |
Msa0351950 | AT1G25380.2 | 28.086 | 324 | 189 | 10 | 44 | 354 | 37 | 329 | 3.08e-27 | 110 |
Msa0351950 | AT1G25380.2 | 25.789 | 190 | 110 | 5 | 43 | 224 | 136 | 302 | 8.43e-13 | 69.3 |
Msa0351950 | AT5G48970.1 | 27.829 | 327 | 183 | 8 | 31 | 326 | 25 | 329 | 1.25e-26 | 108 |
Msa0351950 | AT5G48970.1 | 24.779 | 226 | 149 | 5 | 128 | 344 | 24 | 237 | 2.59e-11 | 64.7 |
Msa0351950 | AT3G53940.1 | 28.116 | 345 | 198 | 13 | 9 | 337 | 55 | 365 | 2.95e-26 | 108 |
Msa0351950 | AT3G53940.1 | 26.016 | 246 | 141 | 6 | 107 | 337 | 48 | 267 | 6.12e-13 | 69.7 |
Msa0351950 | AT5G42130.1 | 30.068 | 296 | 161 | 7 | 42 | 328 | 132 | 390 | 4.58e-26 | 108 |
Msa0351950 | AT2G47490.1 | 28.947 | 304 | 182 | 9 | 44 | 340 | 33 | 309 | 1.79e-25 | 105 |
Msa0351950 | AT3G21390.1 | 27.761 | 335 | 190 | 9 | 31 | 335 | 22 | 334 | 1.92e-25 | 105 |
Msa0351950 | AT3G21390.1 | 28.788 | 198 | 120 | 6 | 128 | 321 | 21 | 201 | 4.30e-12 | 67.0 |
Msa0351950 | AT3G21390.1 | 23.629 | 237 | 152 | 5 | 3 | 226 | 108 | 328 | 2.99e-11 | 64.3 |
Msa0351950 | AT3G21390.2 | 27.761 | 335 | 190 | 9 | 31 | 335 | 44 | 356 | 2.88e-25 | 105 |
Msa0351950 | AT3G21390.2 | 29.648 | 199 | 117 | 7 | 128 | 321 | 43 | 223 | 5.27e-12 | 66.6 |
Msa0351950 | AT3G21390.2 | 23.629 | 237 | 152 | 5 | 3 | 226 | 130 | 350 | 4.11e-11 | 63.9 |
Msa0351950 | AT4G32400.1 | 27.358 | 318 | 185 | 7 | 25 | 333 | 111 | 391 | 1.12e-22 | 98.6 |
Msa0351950 | AT4G32400.1 | 26.606 | 218 | 135 | 5 | 9 | 225 | 189 | 382 | 1.78e-12 | 68.6 |
Msa0351950 | AT4G32400.1 | 25.676 | 222 | 125 | 6 | 112 | 331 | 104 | 287 | 7.65e-11 | 63.5 |
Msa0351950 | AT5G01340.1 | 26.250 | 320 | 196 | 8 | 5 | 319 | 3 | 287 | 2.08e-22 | 96.3 |
Msa0351950 | AT4G01100.1 | 22.941 | 340 | 193 | 9 | 24 | 329 | 38 | 342 | 2.61e-22 | 97.1 |
Msa0351950 | AT4G01100.1 | 25.620 | 242 | 157 | 4 | 99 | 338 | 15 | 235 | 2.03e-13 | 70.9 |
Msa0351950 | AT2G37890.1 | 25.938 | 320 | 191 | 10 | 25 | 329 | 42 | 330 | 2.84e-22 | 96.7 |
Msa0351950 | AT5G66380.1 | 26.923 | 312 | 193 | 8 | 25 | 325 | 7 | 294 | 7.01e-22 | 94.7 |
Msa0351950 | AT4G01100.2 | 23.276 | 348 | 196 | 9 | 24 | 329 | 38 | 356 | 1.42e-21 | 95.1 |
Msa0351950 | AT5G48970.2 | 27.857 | 280 | 160 | 7 | 67 | 326 | 1 | 258 | 2.49e-21 | 92.4 |
Msa0351950 | AT4G26180.1 | 25.526 | 333 | 219 | 10 | 26 | 352 | 19 | 328 | 4.49e-21 | 93.2 |
Msa0351950 | AT3G55640.1 | 24.348 | 345 | 217 | 9 | 7 | 337 | 17 | 331 | 6.34e-21 | 92.8 |
Msa0351950 | AT3G55640.1 | 26.446 | 242 | 160 | 5 | 103 | 344 | 16 | 239 | 7.35e-15 | 75.1 |
Msa0351950 | AT3G55640.4 | 24.348 | 345 | 217 | 9 | 7 | 337 | 17 | 331 | 6.34e-21 | 92.8 |
Msa0351950 | AT3G55640.4 | 26.446 | 242 | 160 | 5 | 103 | 344 | 16 | 239 | 7.35e-15 | 75.1 |
Msa0351950 | AT2G33820.1 | 23.676 | 321 | 198 | 7 | 22 | 326 | 12 | 301 | 6.88e-21 | 92.0 |
Msa0351950 | AT4G01100.3 | 23.125 | 320 | 177 | 9 | 44 | 329 | 8 | 292 | 2.42e-20 | 90.5 |
Msa0351950 | AT4G01100.3 | 29.814 | 161 | 110 | 2 | 180 | 338 | 26 | 185 | 4.03e-13 | 69.7 |
Msa0351950 | AT5G51050.1 | 25.796 | 314 | 184 | 11 | 28 | 332 | 223 | 496 | 1.83e-19 | 89.7 |
Msa0351950 | AT4G26180.2 | 26.923 | 286 | 182 | 9 | 26 | 305 | 19 | 283 | 3.29e-19 | 87.0 |
Msa0351950 | AT4G26180.2 | 31.765 | 170 | 88 | 7 | 182 | 336 | 56 | 212 | 5.06e-13 | 69.3 |
Msa0351950 | AT5G07320.1 | 25.939 | 293 | 171 | 9 | 44 | 331 | 225 | 476 | 4.09e-19 | 89.0 |
Msa0351950 | AT1G14560.1 | 26.531 | 294 | 188 | 6 | 44 | 328 | 43 | 317 | 4.15e-19 | 87.4 |
Msa0351950 | AT1G14560.1 | 26.066 | 211 | 129 | 4 | 27 | 225 | 122 | 317 | 2.49e-13 | 70.5 |
Msa0351950 | AT5G61810.2 | 22.727 | 330 | 210 | 7 | 6 | 331 | 44 | 332 | 9.04e-19 | 86.7 |
Msa0351950 | AT5G15640.1 | 26.207 | 290 | 158 | 9 | 42 | 309 | 42 | 297 | 2.59e-18 | 85.1 |
Msa0351950 | AT5G61810.1 | 22.727 | 330 | 210 | 7 | 6 | 331 | 187 | 475 | 3.39e-18 | 85.9 |
Msa0351950 | AT2G33820.3 | 23.100 | 329 | 198 | 8 | 22 | 326 | 12 | 309 | 3.75e-18 | 84.7 |
Msa0351950 | AT5G15640.2 | 26.207 | 290 | 158 | 9 | 42 | 309 | 35 | 290 | 4.65e-18 | 84.3 |
Msa0351950 | AT1G14560.2 | 27.306 | 271 | 169 | 6 | 44 | 305 | 43 | 294 | 6.79e-18 | 83.6 |
Msa0351950 | AT1G14560.2 | 26.596 | 188 | 111 | 4 | 27 | 202 | 122 | 294 | 1.93e-11 | 64.7 |
Msa0351950 | AT3G54110.1 | 23.585 | 318 | 202 | 8 | 26 | 333 | 13 | 299 | 8.19e-18 | 83.2 |
Msa0351950 | AT2G39970.1 | 25.649 | 308 | 197 | 9 | 41 | 327 | 21 | 317 | 1.96e-16 | 79.7 |
Msa0351950 | AT1G72820.1 | 26.627 | 338 | 197 | 11 | 17 | 329 | 25 | 336 | 2.77e-16 | 79.3 |
Msa0351950 | AT1G72820.2 | 26.627 | 338 | 197 | 11 | 17 | 329 | 25 | 336 | 2.77e-16 | 79.3 |
Msa0351950 | AT1G79900.1 | 28.231 | 294 | 170 | 8 | 43 | 333 | 31 | 286 | 6.62e-16 | 77.8 |
Msa0351950 | AT3G20240.1 | 27.329 | 322 | 174 | 9 | 26 | 325 | 50 | 333 | 1.01e-15 | 77.8 |
Msa0351950 | AT3G55640.2 | 26.033 | 242 | 161 | 4 | 103 | 344 | 16 | 239 | 2.15e-15 | 75.5 |
Msa0351950 | AT3G55640.3 | 26.033 | 242 | 161 | 4 | 103 | 344 | 16 | 239 | 2.15e-15 | 75.5 |
Msa0351950 | AT4G03115.3 | 24.762 | 315 | 185 | 10 | 24 | 328 | 66 | 338 | 3.84e-15 | 76.3 |
Msa0351950 | AT4G03115.3 | 23.963 | 217 | 136 | 4 | 14 | 226 | 148 | 339 | 6.15e-12 | 66.6 |
Msa0351950 | AT4G03115.1 | 24.762 | 315 | 185 | 10 | 24 | 328 | 34 | 306 | 4.35e-15 | 75.5 |
Msa0351950 | AT4G03115.1 | 23.963 | 217 | 136 | 4 | 14 | 226 | 116 | 307 | 4.94e-12 | 66.6 |
Msa0351950 | AT5G01500.1 | 21.993 | 291 | 183 | 7 | 44 | 329 | 135 | 386 | 4.91e-15 | 76.3 |
Msa0351950 | AT3G51870.1 | 22.259 | 301 | 190 | 7 | 34 | 329 | 97 | 358 | 1.32e-14 | 74.7 |
Msa0351950 | AT5G58970.1 | 22.082 | 317 | 201 | 7 | 28 | 329 | 16 | 301 | 4.78e-14 | 72.4 |
Msa0351950 | AT1G14560.3 | 26.066 | 211 | 129 | 4 | 27 | 225 | 24 | 219 | 7.53e-14 | 70.9 |
Msa0351950 | AT1G14560.3 | 26.293 | 232 | 146 | 4 | 106 | 328 | 4 | 219 | 3.15e-13 | 68.9 |
Msa0351950 | AT3G53940.2 | 26.829 | 246 | 139 | 7 | 107 | 337 | 48 | 267 | 2.19e-13 | 70.1 |
Msa0351950 | AT3G53940.2 | 27.170 | 265 | 148 | 11 | 9 | 261 | 55 | 286 | 1.11e-11 | 65.1 |
Msa0351950 | AT1G14140.1 | 23.448 | 290 | 187 | 7 | 27 | 308 | 15 | 277 | 2.25e-13 | 70.5 |
Msa0351950 | AT2G33820.4 | 24.272 | 206 | 138 | 5 | 22 | 225 | 12 | 201 | 7.67e-13 | 68.6 |
Msa0351950 | AT4G03115.5 | 23.963 | 217 | 136 | 4 | 14 | 226 | 45 | 236 | 1.27e-12 | 67.4 |
Msa0351950 | AT5G26200.1 | 25.231 | 325 | 206 | 11 | 26 | 334 | 37 | 340 | 1.72e-12 | 68.2 |
Msa0351950 | AT5G56450.1 | 26.087 | 207 | 127 | 7 | 28 | 231 | 145 | 328 | 2.42e-12 | 67.8 |
Msa0351950 | AT4G03115.6 | 23.963 | 217 | 136 | 4 | 14 | 226 | 53 | 244 | 2.59e-12 | 66.6 |
Msa0351950 | AT5G64970.1 | 22.727 | 308 | 200 | 8 | 34 | 328 | 137 | 419 | 4.09e-12 | 67.4 |
Msa0351950 | AT5G09470.1 | 26.255 | 259 | 159 | 7 | 74 | 328 | 99 | 329 | 4.95e-12 | 66.6 |
Msa0351950 | AT5G64970.2 | 22.476 | 307 | 200 | 8 | 35 | 328 | 14 | 295 | 5.27e-12 | 66.2 |
Msa0351950 | AT5G58970.2 | 25.000 | 220 | 130 | 6 | 126 | 330 | 16 | 215 | 5.48e-11 | 63.2 |
Find 111 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGCAAATTCTTGTGGTTT+AGG | 0.175362 | 3_1:+19544501 | None:intergenic |
GGAGCTGTTGCGGGTGCTTT+TGG | 0.179774 | 3_1:-19542380 | Msa0351950:CDS |
CCATCTGCAATATGCCTTTC+TGG | 0.185244 | 3_1:+19542136 | None:intergenic |
TTCCTTTGAGGGCCTGGTTT+TGG | 0.189025 | 3_1:-19540293 | Msa0351950:CDS |
GAATTATTAACGTGCCAATT+TGG | 0.247306 | 3_1:+19540313 | None:intergenic |
GGCTTCAGCGCTTACCTTCA+TGG | 0.250292 | 3_1:-19539688 | Msa0351950:CDS |
CAAAACTAGGCTGCAAGTTC+AGG | 0.252977 | 3_1:-19540135 | Msa0351950:CDS |
GAAATATATGATTATTATAA+AGG | 0.257154 | 3_1:-19541064 | Msa0351950:CDS |
ATGCAGAACACAGGGTTTAA+AGG | 0.259624 | 3_1:-19541017 | Msa0351950:CDS |
GCGACTGGTGCAACATATTT+TGG | 0.263682 | 3_1:-19541732 | Msa0351950:CDS |
GGTGTAGTACCTGGTGTTAC+TGG | 0.266882 | 3_1:-19541762 | Msa0351950:CDS |
AGTTATTGGAGAATATTATT+TGG | 0.279272 | 3_1:-19539219 | Msa0351950:three_prime_UTR |
GTTCGGAGCTTGTGATTTAC+TGG | 0.287890 | 3_1:+19544431 | None:intergenic |
AAGCAAATTCTTGTGGTTTA+GGG | 0.291552 | 3_1:+19544502 | None:intergenic |
AGGAGTTAAGGGGATGTTTA+GGG | 0.293636 | 3_1:-19539742 | Msa0351950:CDS |
TGGATGCAATTTACAACATA+TGG | 0.297888 | 3_1:-19539773 | Msa0351950:CDS |
CAAAGTCAAGCTATTCTAAA+TGG | 0.302898 | 3_1:-19542314 | Msa0351950:CDS |
ATCCTAGCCTTGGTGGCCAC+TGG | 0.304355 | 3_1:-19541671 | Msa0351950:CDS |
AAGGAGTTAAGGGGATGTTT+AGG | 0.304885 | 3_1:-19539743 | Msa0351950:CDS |
TCTTCACATTACAGCCTCTA+TGG | 0.319361 | 3_1:-19539338 | Msa0351950:three_prime_UTR |
GATGGATATCTAATCCAAAT+TGG | 0.340977 | 3_1:-19540327 | Msa0351950:CDS |
CACTGGGCACATTTCATTGC+TGG | 0.343281 | 3_1:-19541654 | Msa0351950:CDS |
TTTGTATGGGGAGCTGTTGC+GGG | 0.362454 | 3_1:-19542389 | Msa0351950:CDS |
AAGTATGGAGGGAGTTTGTA+TGG | 0.370405 | 3_1:-19542403 | Msa0351950:CDS |
AGTAGAAAAGAAGAAATCTT+TGG | 0.370427 | 3_1:-19539592 | Msa0351950:CDS |
TGCAGAACACAGGGTTTAAA+GGG | 0.376283 | 3_1:-19541016 | Msa0351950:CDS |
ATGGGCTAAGGAAGGAGTTA+AGG | 0.377069 | 3_1:-19539754 | Msa0351950:CDS |
CACGTTAATAATTCCTTTGA+GGG | 0.388766 | 3_1:-19540304 | Msa0351950:CDS |
GCAAGGGATGTACCATTTGC+TGG | 0.397105 | 3_1:-19540514 | Msa0351950:CDS |
CGGTCTGTCTGGAAGGTTGA+TGG | 0.398866 | 3_1:-19542111 | Msa0351950:CDS |
TCTATTGTGTTTAGGTATAA+CGG | 0.412192 | 3_1:-19539801 | Msa0351950:intron |
TGCATATCTCACCACTCCTT+TGG | 0.414329 | 3_1:-19540165 | Msa0351950:CDS |
TGCAGATGGTGCGGTCTGTC+TGG | 0.418211 | 3_1:-19542122 | Msa0351950:CDS |
TCCTAGCCTTGGTGGCCACT+GGG | 0.420808 | 3_1:-19541670 | Msa0351950:CDS |
GGTTTAAAGGGTTTATATGC+AGG | 0.422881 | 3_1:-19541004 | Msa0351950:CDS |
TTGAAAGATGCTACAGAGTA+CGG | 0.432563 | 3_1:-19540358 | Msa0351950:CDS |
CTTGATCAATCATTCATCAA+TGG | 0.433132 | 3_1:-19544472 | Msa0351950:exon |
AAGTTCAGGGTTCAACTTTG+AGG | 0.434100 | 3_1:-19540121 | Msa0351950:intron |
AGCTATTCTAAATGGTGTTA+AGG | 0.436394 | 3_1:-19542306 | Msa0351950:intron |
TAATAATTCCTTTGAGGGCC+TGG | 0.437731 | 3_1:-19540299 | Msa0351950:CDS |
GAGAATTGCGTGGTACATTC+CGG | 0.443486 | 3_1:-19539709 | Msa0351950:CDS |
AAATATATGATTATTATAAA+GGG | 0.444285 | 3_1:-19541063 | Msa0351950:CDS |
GTTTGTATGGGGAGCTGTTG+CGG | 0.447613 | 3_1:-19542390 | Msa0351950:CDS |
CAGAGTACGGGAAGCGAAGA+TGG | 0.449993 | 3_1:-19540345 | Msa0351950:CDS |
CATTTCATTGCTGGAGCTGT+TGG | 0.450661 | 3_1:-19541645 | Msa0351950:intron |
CGCTGCTTTATCACTTCGCA+TGG | 0.451002 | 3_1:+19541163 | None:intergenic |
TAACTAAGTCAAACTTGGTC+TGG | 0.455957 | 3_1:-19539416 | Msa0351950:three_prime_UTR |
GCACGTTAATAATTCCTTTG+AGG | 0.456007 | 3_1:-19540305 | Msa0351950:CDS |
AGCGCTTACCTTCATGGCTG+TGG | 0.458535 | 3_1:-19539682 | Msa0351950:CDS |
AAGCAGCGCATGCAAGTTCA+AGG | 0.461159 | 3_1:-19541148 | Msa0351950:CDS |
GGAATGTACCACGCAATTCT+CGG | 0.466750 | 3_1:+19539711 | None:intergenic |
TGGGCTAAGGAAGGAGTTAA+GGG | 0.467533 | 3_1:-19539753 | Msa0351950:CDS |
AACATTGATCGAACCACCAT+TGG | 0.469379 | 3_1:+19539626 | None:intergenic |
CTTTGGACGTCGTCAAAACT+AGG | 0.479684 | 3_1:-19540148 | Msa0351950:CDS |
AACTTTAACTAAGTCAAACT+TGG | 0.481020 | 3_1:-19539421 | Msa0351950:three_prime_UTR |
TGGAAGGTTGATGGATTAAG+AGG | 0.483974 | 3_1:-19542102 | Msa0351950:intron |
GAATGTACCACGCAATTCTC+GGG | 0.494354 | 3_1:+19539712 | None:intergenic |
GGATGCAATTTACAACATAT+GGG | 0.498562 | 3_1:-19539772 | Msa0351950:CDS |
TGCATATTGAGCTGCCTGCA+TGG | 0.498693 | 3_1:+19541035 | None:intergenic |
CTTCATTGCAGTAGAACTCC+AGG | 0.501088 | 3_1:+19541114 | None:intergenic |
GAGAAATTCCACAGCCATGA+AGG | 0.502862 | 3_1:+19539674 | None:intergenic |
AATAATATTCTCCAATAACT+TGG | 0.507864 | 3_1:+19539222 | None:intergenic |
AAAACTAGGCTGCAAGTTCA+GGG | 0.510587 | 3_1:-19540134 | Msa0351950:CDS |
TAATCATATATTTCTGCACC+AGG | 0.515860 | 3_1:+19541073 | None:intergenic |
AGTATGGAGGGAGTTTGTAT+GGG | 0.522756 | 3_1:-19542402 | Msa0351950:CDS |
GAGGATTCACATCCTAGCCT+TGG | 0.526709 | 3_1:-19541681 | Msa0351950:CDS |
TGGGGAAGGAATGATGCATC+CGG | 0.530320 | 3_1:-19542360 | Msa0351950:CDS |
AATACCATCAGGCCAGCAAA+TGG | 0.532808 | 3_1:+19540502 | None:intergenic |
AGAAAAGAAGAAATCTTTGG+AGG | 0.540442 | 3_1:-19539589 | Msa0351950:CDS |
AAACAGAAAGCAAATTCTTG+TGG | 0.541182 | 3_1:+19544495 | None:intergenic |
TGTACCATTTGCTGGCCTGA+TGG | 0.545241 | 3_1:-19540506 | Msa0351950:intron |
ATTATGATATTGAAGTATGG+AGG | 0.546460 | 3_1:-19542415 | Msa0351950:intron |
GTTTAAAGGGTTTATATGCA+GGG | 0.548432 | 3_1:-19541003 | Msa0351950:intron |
GTTTAGGTATAACGGTTGGT+TGG | 0.552562 | 3_1:-19539793 | Msa0351950:intron |
CGTTCAGTTTAACTCATGCA+TGG | 0.554337 | 3_1:-19539381 | Msa0351950:three_prime_UTR |
AGTTCTACTGCAATGAAGAA+TGG | 0.554759 | 3_1:-19541109 | Msa0351950:CDS |
GTTACTGGCTCTCTTGCGAC+TGG | 0.554875 | 3_1:-19541747 | Msa0351950:CDS |
TCCCAAAACCAGGCCCTCAA+AGG | 0.560158 | 3_1:+19540291 | None:intergenic |
ACATTGATCGAACCACCATT+GGG | 0.560504 | 3_1:+19539627 | None:intergenic |
CAGCTAATCCTCCCAAAACC+AGG | 0.561108 | 3_1:+19540281 | None:intergenic |
CTACAGATATTTGTCTACAC+TGG | 0.566858 | 3_1:-19540536 | Msa0351950:intron |
ATGAAGGTAAGCGCTGAAGC+CGG | 0.569322 | 3_1:+19539690 | None:intergenic |
AGGAGGCTAGTTAAAAGTTG+TGG | 0.569974 | 3_1:-19539569 | Msa0351950:exon |
AAAGAAGAAATCTTTGGAGG+AGG | 0.570380 | 3_1:-19539586 | Msa0351950:CDS |
GATTCACATCCTAGCCTTGG+TGG | 0.573120 | 3_1:-19541678 | Msa0351950:CDS |
TTCAAGGCACAATTACATCC+TGG | 0.574829 | 3_1:-19541132 | Msa0351950:CDS |
TGAAAGATGCTACAGAGTAC+GGG | 0.575711 | 3_1:-19540357 | Msa0351950:CDS |
CAGCTCAATATGCAGAACAC+AGG | 0.577068 | 3_1:-19541026 | Msa0351950:CDS |
TATAAAGGGATGTTCCATGC+AGG | 0.579831 | 3_1:-19541049 | Msa0351950:CDS |
GCCCAGTGGCCACCAAGGCT+AGG | 0.587248 | 3_1:+19541669 | None:intergenic |
ATTTGTCTGTAGAACCAGAA+AGG | 0.587505 | 3_1:-19542150 | Msa0351950:intron |
TGGTCGTGAGAAACGTGGTT+CGG | 0.588266 | 3_1:+19544414 | None:intergenic |
TTGTGTTTAGGTATAACGGT+TGG | 0.591535 | 3_1:-19539797 | Msa0351950:intron |
CCAGAAAGGCATATTGCAGA+TGG | 0.592867 | 3_1:-19542136 | Msa0351950:CDS |
GATGGTGCGGTCTGTCTGGA+AGG | 0.593657 | 3_1:-19542118 | Msa0351950:CDS |
GATATTTGTCTACACTGGCA+AGG | 0.597256 | 3_1:-19540531 | Msa0351950:CDS |
GCAAGAGAGCCAGTAACACC+AGG | 0.599638 | 3_1:+19541753 | None:intergenic |
AATTTACAACATATGGGCTA+AGG | 0.602788 | 3_1:-19539766 | Msa0351950:CDS |
TTATGATATTGAAGTATGGA+GGG | 0.606052 | 3_1:-19542414 | Msa0351950:intron |
TACAACATATGGGCTAAGGA+AGG | 0.606603 | 3_1:-19539762 | Msa0351950:CDS |
ATATTTGTCTACACTGGCAA+GGG | 0.612528 | 3_1:-19540530 | Msa0351950:CDS |
AATGGCATTGCAATAAAACC+TGG | 0.616472 | 3_1:-19541091 | Msa0351950:CDS |
TTTGACGACGTCCAAAGGAG+TGG | 0.622510 | 3_1:+19540154 | None:intergenic |
AGCTCAATATGCAGAACACA+GGG | 0.628284 | 3_1:-19541025 | Msa0351950:CDS |
GTATGGAGGGAGTTTGTATG+GGG | 0.630655 | 3_1:-19542401 | Msa0351950:CDS |
GGAGTTAAGGGGATGTTTAG+GGG | 0.637208 | 3_1:-19539741 | Msa0351950:CDS |
AATGTGCCCAGTGGCCACCA+AGG | 0.650741 | 3_1:+19541664 | None:intergenic |
GGGCTAAGGAAGGAGTTAAG+GGG | 0.653081 | 3_1:-19539752 | Msa0351950:CDS |
AAGGCATATTGCAGATGGTG+CGG | 0.663444 | 3_1:-19542131 | Msa0351950:CDS |
GTAGCGTCCCGAGAATTGCG+TGG | 0.697563 | 3_1:-19539719 | Msa0351950:CDS |
CAGCAATGAAATGTGCCCAG+TGG | 0.728322 | 3_1:+19541655 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTAAAATTAAAAAATT+CGG | + | chr3_1:19539409-19539428 | None:intergenic | 0.0% |
!!! | ATTTTTCTATTATAATTTGA+TGG | - | chr3_1:19540033-19540052 | Msa0351950:intron | 10.0% |
!! | AAAATATAAGCAAAAAAATA+AGG | + | chr3_1:19542550-19542569 | None:intergenic | 10.0% |
!! | GAAATATATGATTATTATAA+AGG | - | chr3_1:19542701-19542720 | Msa0351950:intron | 10.0% |
!!! | TTGTTATTATTTGAAATTGA+AGG | - | chr3_1:19539476-19539495 | Msa0351950:three_prime_UTR | 15.0% |
!!! | TCATTTTTTCAAATTTTTAC+TGG | - | chr3_1:19539825-19539844 | Msa0351950:intron | 15.0% |
!! | AATAGAAAAATTGTGTTTAA+TGG | + | chr3_1:19540024-19540043 | None:intergenic | 15.0% |
!!! | AACATAAAAGTTAAGTTTTA+TGG | + | chr3_1:19540380-19540399 | None:intergenic | 15.0% |
!! | ACAATATATAATTAATCACA+AGG | + | chr3_1:19541968-19541987 | None:intergenic | 15.0% |
!! | TGATTAATTATATATTGTTC+AGG | - | chr3_1:19541970-19541989 | Msa0351950:intron | 15.0% |
!! | ACTTATTTGCAAAAATAAAT+GGG | + | chr3_1:19542328-19542347 | None:intergenic | 15.0% |
!! | AACTTATTTGCAAAAATAAA+TGG | + | chr3_1:19542329-19542348 | None:intergenic | 15.0% |
!!! | ATTTTTTTGCTTATATTTTC+AGG | - | chr3_1:19542551-19542570 | Msa0351950:intron | 15.0% |
!!! | TAAATTGATAATGACAAAAA+AGG | - | chr3_1:19543876-19543895 | Msa0351950:intron | 15.0% |
!!! | ATTAATTAGTACCGAAAAAA+TGG | + | chr3_1:19539374-19539393 | None:intergenic | 20.0% |
!! | AAAATCTACAGCTAATAAAA+TGG | + | chr3_1:19539458-19539477 | None:intergenic | 20.0% |
!!! | TTTTGATTTTCCTAATTTTG+TGG | - | chr3_1:19539590-19539609 | Msa0351950:CDS | 20.0% |
!!! | TTTGATTTTCCTAATTTTGT+GGG | - | chr3_1:19539591-19539610 | Msa0351950:CDS | 20.0% |
!! | TTCTATTATAATTTGATGGA+AGG | - | chr3_1:19540037-19540056 | Msa0351950:intron | 20.0% |
!! | AAGTAGTTAAGAATTCTAAT+TGG | - | chr3_1:19540429-19540448 | Msa0351950:intron | 20.0% |
!!! | TCAACTTTTATATTACAATC+TGG | - | chr3_1:19540893-19540912 | Msa0351950:intron | 20.0% |
!! | GTGTGACAAAAAATTATTAA+AGG | + | chr3_1:19541019-19541038 | None:intergenic | 20.0% |
!!! | TTTGTTTTCTAGTAATAATG+AGG | + | chr3_1:19541274-19541293 | None:intergenic | 20.0% |
!! | ATTGAAGAAAGACAAAATAA+TGG | + | chr3_1:19541306-19541325 | None:intergenic | 20.0% |
!! | TGTATTATGATATTGAAGTA+TGG | - | chr3_1:19541347-19541366 | Msa0351950:intron | 20.0% |
!! | TTTAATATTTGTCCCAAATA+TGG | - | chr3_1:19541702-19541721 | Msa0351950:CDS | 20.0% |
!! | TTAATATTTGTCCCAAATAT+GGG | - | chr3_1:19541703-19541722 | Msa0351950:CDS | 20.0% |
!! | AAATCAAAATACCCATATTT+GGG | + | chr3_1:19541717-19541736 | None:intergenic | 20.0% |
!! | AAAATCAAAATACCCATATT+TGG | + | chr3_1:19541718-19541737 | None:intergenic | 20.0% |
!!! | TTGTTTAAGAAAAGAGTTTT+TGG | - | chr3_1:19541803-19541822 | Msa0351950:intron | 20.0% |
!!! | TAATTGAAGTATTCCATTTA+TGG | - | chr3_1:19542368-19542387 | Msa0351950:CDS | 20.0% |
!!! | ATCTTCGTAAAATCATTTTA+TGG | + | chr3_1:19542977-19542996 | None:intergenic | 20.0% |
!! | AACTAGTTATATAAGTCAAA+TGG | + | chr3_1:19543072-19543091 | None:intergenic | 20.0% |
!!! | TAAACATTTTCTTCTTTCTT+TGG | - | chr3_1:19543161-19543180 | Msa0351950:intron | 20.0% |
!!! | TTTTGCTCAAATAATTAAAC+AGG | - | chr3_1:19543571-19543590 | Msa0351950:intron | 20.0% |
!! | ATAACATGTTAGAATAGTTA+TGG | + | chr3_1:19543683-19543702 | None:intergenic | 20.0% |
!! | ACTATTCTAACATGTTATTA+TGG | - | chr3_1:19543685-19543704 | Msa0351950:intron | 20.0% |
!!! | TTTATGCAAAATTGATTTTC+TGG | - | chr3_1:19543791-19543810 | Msa0351950:intron | 20.0% |
!!! | GTCATTATCAATTTAAGATA+AGG | + | chr3_1:19543871-19543890 | None:intergenic | 20.0% |
!! | ATCTTTGTAAAAATCAAGAT+GGG | + | chr3_1:19544238-19544257 | None:intergenic | 20.0% |
!!! | ATCTTGATTTTTACAAAGAT+GGG | - | chr3_1:19544238-19544257 | Msa0351950:intron | 20.0% |
!!! | ATAATTTTCTTATTGCATCA+TGG | + | chr3_1:19544312-19544331 | None:intergenic | 20.0% |
!! | AATAATATTCTCCAATAACT+TGG | + | chr3_1:19544546-19544565 | None:intergenic | 20.0% |
!! | GAAATTGAAGGAATTTTTCT+TGG | - | chr3_1:19539488-19539507 | Msa0351950:three_prime_UTR | 25.0% |
! | TTGCAAATTTCTTCAAACAT+TGG | + | chr3_1:19539521-19539540 | None:intergenic | 25.0% |
!! | TTTCAAATTTTTACTGGTGT+TGG | - | chr3_1:19539831-19539850 | Msa0351950:intron | 25.0% |
! | TCAAAAATGCAGGTAAATTT+GGG | + | chr3_1:19539920-19539939 | None:intergenic | 25.0% |
! | TTCAAAAATGCAGGTAAATT+TGG | + | chr3_1:19539921-19539940 | None:intergenic | 25.0% |
!! | TTCAAATTTTTATGAGTGTC+CGG | - | chr3_1:19540132-19540151 | Msa0351950:CDS | 25.0% |
! | GAAAAATATAGGCTTCTTAT+TGG | - | chr3_1:19540316-19540335 | Msa0351950:CDS | 25.0% |
! | TATGTTACACTCTGATTATT+TGG | - | chr3_1:19540394-19540413 | Msa0351950:intron | 25.0% |
! | ATGTTACACTCTGATTATTT+GGG | - | chr3_1:19540395-19540414 | Msa0351950:intron | 25.0% |
!!! | TGATTATTTGGGTTTTTGTT+CGG | - | chr3_1:19540406-19540425 | Msa0351950:intron | 25.0% |
!! | TGAACTTTTGTATGATTTGA+AGG | - | chr3_1:19540638-19540657 | Msa0351950:intron | 25.0% |
! | CTAAATGCAGATACAAAAAT+GGG | + | chr3_1:19540733-19540752 | None:intergenic | 25.0% |
! | TCTAAATGCAGATACAAAAA+TGG | + | chr3_1:19540734-19540753 | None:intergenic | 25.0% |
! | TTACAACCTTACAAGTAATT+TGG | - | chr3_1:19540992-19541011 | Msa0351950:intron | 25.0% |
! | TACAACCTTACAAGTAATTT+GGG | - | chr3_1:19540993-19541012 | Msa0351950:intron | 25.0% |
! | ATTATGATATTGAAGTATGG+AGG | - | chr3_1:19541350-19541369 | Msa0351950:intron | 25.0% |
! | TTATGATATTGAAGTATGGA+GGG | - | chr3_1:19541351-19541370 | Msa0351950:intron | 25.0% |
! | TCACAGTCTAATTTATCTAT+AGG | + | chr3_1:19541496-19541515 | None:intergenic | 25.0% |
! | AATACTTCAATTACTTACTG+AGG | + | chr3_1:19542361-19542380 | None:intergenic | 25.0% |
! | TCATGATAATCAATCATTGT+TGG | + | chr3_1:19542395-19542414 | None:intergenic | 25.0% |
! | AATAAACCTTCAAATTTGCA+CGG | + | chr3_1:19542471-19542490 | None:intergenic | 25.0% |
!! | GCTTTTTATTCACAATCAAA+CGG | + | chr3_1:19542518-19542537 | None:intergenic | 25.0% |
! | ATCAAATTAAACGAGAAAGA+GGG | + | chr3_1:19542857-19542876 | None:intergenic | 25.0% |
! | TATCAAATTAAACGAGAAAG+AGG | + | chr3_1:19542858-19542877 | None:intergenic | 25.0% |
! | AGTTGAATTATGTGATACTA+TGG | - | chr3_1:19543088-19543107 | Msa0351950:intron | 25.0% |
!! | AAGCTCTAACTTATCTAAAT+TGG | + | chr3_1:19543117-19543136 | None:intergenic | 25.0% |
! | ATTTGTAGACAAATATCATC+AGG | + | chr3_1:19543318-19543337 | None:intergenic | 25.0% |
! | ACTTAAGTACATATGTTCAA+AGG | + | chr3_1:19543530-19543549 | None:intergenic | 25.0% |
! | GTTCATTGAAGAAAATTAAG+TGG | + | chr3_1:19543738-19543757 | None:intergenic | 25.0% |
!!! | ATTGATTTTCTGGTGTATTA+TGG | - | chr3_1:19543801-19543820 | Msa0351950:intron | 25.0% |
!!! | AAAAGGCTATTTTTTGCATT+TGG | - | chr3_1:19543893-19543912 | Msa0351950:intron | 25.0% |
!! | ATTTGGATTGTCATGTTTTA+TGG | - | chr3_1:19543910-19543929 | Msa0351950:intron | 25.0% |
! | TTGCTTTATCTATTGTGTTT+AGG | - | chr3_1:19543956-19543975 | Msa0351950:intron | 25.0% |
! | TCTATTGTGTTTAGGTATAA+CGG | - | chr3_1:19543964-19543983 | Msa0351950:intron | 25.0% |
! | AGTAGAAAAGAAGAAATCTT+TGG | - | chr3_1:19544173-19544192 | Msa0351950:intron | 25.0% |
! | CATCTTTGTAAAAATCAAGA+TGG | + | chr3_1:19544239-19544258 | None:intergenic | 25.0% |
!! | CATCTTGATTTTTACAAAGA+TGG | - | chr3_1:19544237-19544256 | Msa0351950:intron | 25.0% |
! | AACTTTAACTAAGTCAAACT+TGG | - | chr3_1:19544344-19544363 | Msa0351950:intron | 25.0% |
! | TAAACTGAACGATCAAAAAT+GGG | + | chr3_1:19544375-19544394 | None:intergenic | 25.0% |
! | TTAAACTGAACGATCAAAAA+TGG | + | chr3_1:19544376-19544395 | None:intergenic | 25.0% |
AAGCAAATTCTTGTGGTTTA+GGG | + | chr3_1:19539266-19539285 | None:intergenic | 30.0% | |
AAAGCAAATTCTTGTGGTTT+AGG | + | chr3_1:19539267-19539286 | None:intergenic | 30.0% | |
AAACAGAAAGCAAATTCTTG+TGG | + | chr3_1:19539273-19539292 | None:intergenic | 30.0% | |
CTTGATCAATCATTCATCAA+TGG | - | chr3_1:19539293-19539312 | Msa0351950:three_prime_UTR | 30.0% | |
TCTTAACAACCCACAAAATT+AGG | + | chr3_1:19539603-19539622 | None:intergenic | 30.0% | |
!! | AATGATATAAAGCACTGACA+TGG | + | chr3_1:19539878-19539897 | None:intergenic | 30.0% |
!!! | ACCTGCATTTTTGAAATTGA+TGG | - | chr3_1:19539926-19539945 | Msa0351950:intron | 30.0% |
TCCATCAATTTCAAAAATGC+AGG | + | chr3_1:19539930-19539949 | None:intergenic | 30.0% | |
AAGTAAACTAACATCCAACA+AGG | + | chr3_1:19539973-19539992 | None:intergenic | 30.0% | |
!!! | TACCTGCATTTTGAAATTGA+TGG | - | chr3_1:19540284-19540303 | Msa0351950:CDS | 30.0% |
TACCATCAATTTCAAAATGC+AGG | + | chr3_1:19540289-19540308 | None:intergenic | 30.0% | |
! | TTGAAATTGATGGTATGACA+TGG | - | chr3_1:19540294-19540313 | Msa0351950:CDS | 30.0% |
GGTATGACATGGAAAAATAT+AGG | - | chr3_1:19540305-19540324 | Msa0351950:CDS | 30.0% | |
ACTAGAAAGTTTCTTGATTG+AGG | - | chr3_1:19540552-19540571 | Msa0351950:intron | 30.0% | |
GTTCTTATGTGGCATAAAAT+TGG | + | chr3_1:19540579-19540598 | None:intergenic | 30.0% | |
! | TTTTATGCCACATAAGAACA+TGG | - | chr3_1:19540580-19540599 | Msa0351950:intron | 30.0% |
TCATGTTTCAACATAATCCT+GGG | + | chr3_1:19540621-19540640 | None:intergenic | 30.0% | |
TTCATGTTTCAACATAATCC+TGG | + | chr3_1:19540622-19540641 | None:intergenic | 30.0% | |
GTATCTGCATTTAGAAATTG+TGG | - | chr3_1:19540739-19540758 | Msa0351950:intron | 30.0% | |
CATTTAGAAATTGTGGTATG+AGG | - | chr3_1:19540746-19540765 | Msa0351950:intron | 30.0% | |
! | ATTTTGCATTTTGAACAGCA+TGG | - | chr3_1:19540806-19540825 | Msa0351950:intron | 30.0% |
TGAACAGCATGGAAAAATAA+AGG | - | chr3_1:19540817-19540836 | Msa0351950:intron | 30.0% | |
TATATTACAATCTGGTTACC+AGG | - | chr3_1:19540901-19540920 | Msa0351950:intron | 30.0% | |
ATATTACAATCTGGTTACCA+GGG | - | chr3_1:19540902-19540921 | Msa0351950:intron | 30.0% | |
GTTTAAAAAATTGCTCTCTG+AGG | - | chr3_1:19540957-19540976 | Msa0351950:intron | 30.0% | |
ATTACTTGTAAGGTTGTAAC+TGG | + | chr3_1:19540991-19541010 | None:intergenic | 30.0% | |
! | CTGATTTTGCAAAACCAATA+CGG | + | chr3_1:19541214-19541233 | None:intergenic | 30.0% |
TAGTAATAATGAGGCTTAGT+AGG | + | chr3_1:19541265-19541284 | None:intergenic | 30.0% | |
!! | ACTTTGTATTCGTGTTTTGA+TGG | + | chr3_1:19541437-19541456 | None:intergenic | 30.0% |
CAAAGTCAAGCTATTCTAAA+TGG | - | chr3_1:19541451-19541470 | Msa0351950:intron | 30.0% | |
! | AGCTATTCTAAATGGTGTTA+AGG | - | chr3_1:19541459-19541478 | Msa0351950:intron | 30.0% |
! | TAAAGCTTCTCTCTTTTGTT+GGG | - | chr3_1:19541586-19541605 | Msa0351950:intron | 30.0% |
!! | CCAAATGTGATTTTAACATG+AGG | + | chr3_1:19541752-19541771 | None:intergenic | 30.0% |
CCTCATGTTAAAATCACATT+TGG | - | chr3_1:19541749-19541768 | Msa0351950:CDS | 30.0% | |
! | CATCATTTTACCCTCAAAAT+AGG | + | chr3_1:19541836-19541855 | None:intergenic | 30.0% |
! | CATGTATATAAAAGCATGCT+TGG | + | chr3_1:19541863-19541882 | None:intergenic | 30.0% |
! | TGATCTTGTTATGTAGACTT+TGG | - | chr3_1:19541920-19541939 | Msa0351950:intron | 30.0% |
! | TATATTGTTCAGGCTTTTAC+AGG | - | chr3_1:19541980-19541999 | Msa0351950:intron | 30.0% |
! | ATATTGTTCAGGCTTTTACA+GGG | - | chr3_1:19541981-19542000 | Msa0351950:intron | 30.0% |
TCATAGAGTCAACTAAAAAG+TGG | - | chr3_1:19542058-19542077 | Msa0351950:intron | 30.0% | |
AATCATTGTTGGTCCATAAA+TGG | + | chr3_1:19542384-19542403 | None:intergenic | 30.0% | |
! | TTTTATCCGTGCAAATTTGA+AGG | - | chr3_1:19542462-19542481 | Msa0351950:intron | 30.0% |
!! | ATATTTTCAGGAGATACACT+TGG | - | chr3_1:19542563-19542582 | Msa0351950:intron | 30.0% |
!! | TATTTTCAGGAGATACACTT+GGG | - | chr3_1:19542564-19542583 | Msa0351950:intron | 30.0% |
! | TAATCATATATTTCTGCACC+AGG | + | chr3_1:19542695-19542714 | None:intergenic | 30.0% |
GTTTAAAGGGTTTATATGCA+GGG | - | chr3_1:19542762-19542781 | Msa0351950:intron | 30.0% | |
TCAAATTAAACGAGAAAGAG+GGG | + | chr3_1:19542856-19542875 | None:intergenic | 30.0% | |
TAGACAATAAATAGTACCCT+AGG | - | chr3_1:19542898-19542917 | Msa0351950:intron | 30.0% | |
TTATGACAACGACAACTTAT+TGG | + | chr3_1:19542926-19542945 | None:intergenic | 30.0% | |
ATGTACCATGCAATTGTTAT+AGG | - | chr3_1:19543367-19543386 | Msa0351950:intron | 30.0% | |
GATGGATATCTAATCCAAAT+TGG | - | chr3_1:19543438-19543457 | Msa0351950:intron | 30.0% | |
GAATTATTAACGTGCCAATT+TGG | + | chr3_1:19543455-19543474 | None:intergenic | 30.0% | |
CACGTTAATAATTCCTTTGA+GGG | - | chr3_1:19543461-19543480 | Msa0351950:intron | 30.0% | |
AAAATTAAGTGGTATCCTGA+TGG | + | chr3_1:19543727-19543746 | None:intergenic | 30.0% | |
! | ATGGACTAAAGCTAAATTGA+TGG | - | chr3_1:19543929-19543948 | Msa0351950:intron | 30.0% |
TGGATGCAATTTACAACATA+TGG | - | chr3_1:19543992-19544011 | Msa0351950:intron | 30.0% | |
GGATGCAATTTACAACATAT+GGG | - | chr3_1:19543993-19544012 | Msa0351950:intron | 30.0% | |
! | AATTTACAACATATGGGCTA+AGG | - | chr3_1:19543999-19544018 | Msa0351950:intron | 30.0% |
!! | TTTAATGAAAAAGTGCCCAA+TGG | - | chr3_1:19544123-19544142 | Msa0351950:intron | 30.0% |
AGAAAAGAAGAAATCTTTGG+AGG | - | chr3_1:19544176-19544195 | Msa0351950:intron | 30.0% | |
! | ATATTTTCACGCCAAGTTAT+TGG | - | chr3_1:19544532-19544551 | Msa0351950:five_prime_UTR | 30.0% |
!!! | GTTTCTCACGACCATTTTTT+CGG | - | chr3_1:19539360-19539379 | Msa0351950:three_prime_UTR | 35.0% |
GTAATTACATGTGTCTGTGT+CGG | + | chr3_1:19539794-19539813 | None:intergenic | 35.0% | |
!!! | TTTTTACTGGTGTTGGTATC+AGG | - | chr3_1:19539838-19539857 | Msa0351950:intron | 35.0% |
!!! | TTTTACTGGTGTTGGTATCA+GGG | - | chr3_1:19539839-19539858 | Msa0351950:intron | 35.0% |
GCGAAATTGTGGATACTTAT+TGG | + | chr3_1:19540248-19540267 | None:intergenic | 35.0% | |
TCAAAATGCAGGTACAGAAA+CGG | + | chr3_1:19540278-19540297 | None:intergenic | 35.0% | |
! | GTTTTATGGTCAAACACTGT+CGG | + | chr3_1:19540366-19540385 | None:intergenic | 35.0% |
! | GTTGCGATTTTATGTCTAGA+TGG | - | chr3_1:19540515-19540534 | Msa0351950:CDS | 35.0% |
TTAGAAATTGTGGTATGAGG+TGG | - | chr3_1:19540749-19540768 | Msa0351950:intron | 35.0% | |
GGTATGAGGTGGAAAATAAA+AGG | - | chr3_1:19540760-19540779 | Msa0351950:intron | 35.0% | |
AAAATAAAGGCCTCTGATGT+CGG | - | chr3_1:19540830-19540849 | Msa0351950:intron | 35.0% | |
! | AAAAAATTGCTCTCTGAGGA+AGG | - | chr3_1:19540961-19540980 | Msa0351950:intron | 35.0% |
! | AAAAATTGCTCTCTGAGGAA+GGG | - | chr3_1:19540962-19540981 | Msa0351950:intron | 35.0% |
AAAGGCCCAAATTACTTGTA+AGG | + | chr3_1:19541001-19541020 | None:intergenic | 35.0% | |
TTGTCACACATACTATCTCT+TGG | - | chr3_1:19541030-19541049 | Msa0351950:CDS | 35.0% | |
! | CATGATAACAATGATGGGAA+GGG | + | chr3_1:19541104-19541123 | None:intergenic | 35.0% |
TCCACCATGATAACAATGAT+GGG | + | chr3_1:19541109-19541128 | None:intergenic | 35.0% | |
ATCCACCATGATAACAATGA+TGG | + | chr3_1:19541110-19541129 | None:intergenic | 35.0% | |
! | AAATTTTCAGCTTTCAGCCA+TGG | + | chr3_1:19541139-19541158 | None:intergenic | 35.0% |
TACGGTCAATTTATGAAGGA+TGG | + | chr3_1:19541196-19541215 | None:intergenic | 35.0% | |
CCAATACGGTCAATTTATGA+AGG | + | chr3_1:19541200-19541219 | None:intergenic | 35.0% | |
CCTTCATAAATTGACCGTAT+TGG | - | chr3_1:19541197-19541216 | Msa0351950:intron | 35.0% | |
ATAATGAGGCTTAGTAGGTT+GGG | + | chr3_1:19541260-19541279 | None:intergenic | 35.0% | |
AATAATGAGGCTTAGTAGGT+TGG | + | chr3_1:19541261-19541280 | None:intergenic | 35.0% | |
GAGTATGCATAACAAGAACA+AGG | + | chr3_1:19541526-19541545 | None:intergenic | 35.0% | |
! | CTAAAGCTTCTCTCTTTTGT+TGG | - | chr3_1:19541585-19541604 | Msa0351950:intron | 35.0% |
ATTTGTCTGTAGAACCAGAA+AGG | - | chr3_1:19541615-19541634 | Msa0351950:intron | 35.0% | |
! | TTGGCTGAAAACCTATTTTG+AGG | - | chr3_1:19541822-19541841 | Msa0351950:intron | 35.0% |
!! | TGGCTGAAAACCTATTTTGA+GGG | - | chr3_1:19541823-19541842 | Msa0351950:intron | 35.0% |
! | TATTGTTCAGGCTTTTACAG+GGG | - | chr3_1:19541982-19542001 | Msa0351950:intron | 35.0% |
!! | GTCAACTAAAAAGTGGATTG+AGG | - | chr3_1:19542065-19542084 | Msa0351950:intron | 35.0% |
AGTTCTACTGCAATGAAGAA+TGG | - | chr3_1:19542656-19542675 | Msa0351950:intron | 35.0% | |
AATGGCATTGCAATAAAACC+TGG | - | chr3_1:19542674-19542693 | Msa0351950:intron | 35.0% | |
GGTTTAAAGGGTTTATATGC+AGG | - | chr3_1:19542761-19542780 | Msa0351950:intron | 35.0% | |
CTACAGATATTTGTCTACAC+TGG | - | chr3_1:19543229-19543248 | Msa0351950:intron | 35.0% | |
ATATTTGTCTACACTGGCAA+GGG | - | chr3_1:19543235-19543254 | Msa0351950:intron | 35.0% | |
CACAACCTATAACAATTGCA+TGG | + | chr3_1:19543375-19543394 | None:intergenic | 35.0% | |
TTGAAAGATGCTACAGAGTA+CGG | - | chr3_1:19543407-19543426 | Msa0351950:intron | 35.0% | |
GCACGTTAATAATTCCTTTG+AGG | - | chr3_1:19543460-19543479 | Msa0351950:intron | 35.0% | |
! | TATGTTCAAAGGCATAACAC+TGG | + | chr3_1:19543519-19543538 | None:intergenic | 35.0% |
TTTCTTCAATGAACGTTGCT+TGG | - | chr3_1:19543744-19543763 | Msa0351950:intron | 35.0% | |
TTGTGTTTAGGTATAACGGT+TGG | - | chr3_1:19543968-19543987 | Msa0351950:intron | 35.0% | |
! | AAAGAAGAAATCTTTGGAGG+AGG | - | chr3_1:19544179-19544198 | Msa0351950:intron | 35.0% |
TAACTAAGTCAAACTTGGTC+TGG | - | chr3_1:19544349-19544368 | Msa0351950:intron | 35.0% | |
AAAAATGGTCGTGAGAAACG+TGG | + | chr3_1:19539359-19539378 | None:intergenic | 40.0% | |
GGAATGCCATGAAGAAATAG+AGG | - | chr3_1:19539947-19539966 | Msa0351950:intron | 40.0% | |
! | ACAAGGCCTCTATTTCTTCA+TGG | + | chr3_1:19539956-19539975 | None:intergenic | 40.0% |
! | TGAAGAAATAGAGGCCTTGT+TGG | - | chr3_1:19539956-19539975 | Msa0351950:intron | 40.0% |
! | GTAATCACATGTGTCGATGT+CGG | + | chr3_1:19540093-19540112 | None:intergenic | 40.0% |
GGTGTATATCAGTCTTACAC+TGG | + | chr3_1:19540345-19540364 | None:intergenic | 40.0% | |
TGCCACATAAGAACATGGAA+TGG | - | chr3_1:19540585-19540604 | Msa0351950:intron | 40.0% | |
GCCACATAAGAACATGGAAT+GGG | - | chr3_1:19540586-19540605 | Msa0351950:intron | 40.0% | |
CCACATAAGAACATGGAATG+GGG | - | chr3_1:19540587-19540606 | Msa0351950:intron | 40.0% | |
CAGTCTTACAATGACATCAG+AGG | + | chr3_1:19540786-19540805 | None:intergenic | 40.0% | |
!! | GTTACCAGGGTATTTTGTGT+GGG | - | chr3_1:19540915-19540934 | Msa0351950:intron | 40.0% |
GGCATTATGCAATACCTATC+AGG | - | chr3_1:19541051-19541070 | Msa0351950:CDS | 40.0% | |
CAAAAAGGACATTGCCTGAT+AGG | + | chr3_1:19541068-19541087 | None:intergenic | 40.0% | |
! | ATCAGGCAATGTCCTTTTTG+TGG | - | chr3_1:19541068-19541087 | Msa0351950:CDS | 40.0% |
GGATGAATGAGACCACAAAA+AGG | + | chr3_1:19541083-19541102 | None:intergenic | 40.0% | |
! | CCATGATAACAATGATGGGA+AGG | + | chr3_1:19541105-19541124 | None:intergenic | 40.0% |
CCTTCCCATCATTGTTATCA+TGG | - | chr3_1:19541102-19541121 | Msa0351950:CDS | 40.0% | |
TCCCATCATTGTTATCATGG+TGG | - | chr3_1:19541105-19541124 | Msa0351950:CDS | 40.0% | |
TTGACATACCTGCCGATATA+TGG | - | chr3_1:19541157-19541176 | Msa0351950:CDS | 40.0% | |
GGTCAATTTATGAAGGATGG+CGG | + | chr3_1:19541193-19541212 | None:intergenic | 40.0% | |
AAGTATGGAGGGAGTTTGTA+TGG | - | chr3_1:19541362-19541381 | Msa0351950:intron | 40.0% | |
AGTATGGAGGGAGTTTGTAT+GGG | - | chr3_1:19541363-19541382 | Msa0351950:intron | 40.0% | |
!!! | CGTGTTTTGATGGTATCTAC+CGG | + | chr3_1:19541427-19541446 | None:intergenic | 40.0% |
!! | TGGAAGGTTGATGGATTAAG+AGG | - | chr3_1:19541663-19541682 | Msa0351950:CDS | 40.0% |
TACACATTCTTGAGTCACTC+AGG | - | chr3_1:19542198-19542217 | Msa0351950:intron | 40.0% | |
ACACATTCTTGAGTCACTCA+GGG | - | chr3_1:19542199-19542218 | Msa0351950:intron | 40.0% | |
TTCAAGGCACAATTACATCC+TGG | - | chr3_1:19542633-19542652 | Msa0351950:intron | 40.0% | |
TATAAAGGGATGTTCCATGC+AGG | - | chr3_1:19542716-19542735 | Msa0351950:intron | 40.0% | |
AGCTCAATATGCAGAACACA+GGG | - | chr3_1:19542740-19542759 | Msa0351950:intron | 40.0% | |
ATGCAGAACACAGGGTTTAA+AGG | - | chr3_1:19542748-19542767 | Msa0351950:intron | 40.0% | |
TGCAGAACACAGGGTTTAAA+GGG | - | chr3_1:19542749-19542768 | Msa0351950:intron | 40.0% | |
AGCCACAACAGTTCACTATT+GGG | - | chr3_1:19543034-19543053 | Msa0351950:intron | 40.0% | |
AACCCAATAGTGAACTGTTG+TGG | + | chr3_1:19543039-19543058 | None:intergenic | 40.0% | |
GATATTTGTCTACACTGGCA+AGG | - | chr3_1:19543234-19543253 | Msa0351950:intron | 40.0% | |
GCGTTGTGTATAATACCATC+AGG | + | chr3_1:19543277-19543296 | None:intergenic | 40.0% | |
AACGCATTGAGTTACAGAAC+TGG | - | chr3_1:19543292-19543311 | Msa0351950:intron | 40.0% | |
TGAAAGATGCTACAGAGTAC+GGG | - | chr3_1:19543408-19543427 | Msa0351950:intron | 40.0% | |
! | TAATAATTCCTTTGAGGGCC+TGG | - | chr3_1:19543466-19543485 | Msa0351950:intron | 40.0% |
AAAACTAGGCTGCAAGTTCA+GGG | - | chr3_1:19543631-19543650 | Msa0351950:intron | 40.0% | |
AAGTTCAGGGTTCAACTTTG+AGG | - | chr3_1:19543644-19543663 | Msa0351950:intron | 40.0% | |
GTTTAGGTATAACGGTTGGT+TGG | - | chr3_1:19543972-19543991 | Msa0351950:intron | 40.0% | |
! | TACAACATATGGGCTAAGGA+AGG | - | chr3_1:19544003-19544022 | Msa0351950:intron | 40.0% |
AAGGAGTTAAGGGGATGTTT+AGG | - | chr3_1:19544022-19544041 | Msa0351950:intron | 40.0% | |
AGGAGTTAAGGGGATGTTTA+GGG | - | chr3_1:19544023-19544042 | Msa0351950:intron | 40.0% | |
!! | AATGAAAAAGTGCCCAATGG+TGG | - | chr3_1:19544126-19544145 | Msa0351950:intron | 40.0% |
ACATTGATCGAACCACCATT+GGG | + | chr3_1:19544141-19544160 | None:intergenic | 40.0% | |
AACATTGATCGAACCACCAT+TGG | + | chr3_1:19544142-19544161 | None:intergenic | 40.0% | |
! | AGGAGGCTAGTTAAAAGTTG+TGG | - | chr3_1:19544196-19544215 | Msa0351950:intron | 40.0% |
CGTTCAGTTTAACTCATGCA+TGG | - | chr3_1:19544384-19544403 | Msa0351950:intron | 40.0% | |
TCTTCACATTACAGCCTCTA+TGG | - | chr3_1:19544427-19544446 | Msa0351950:CDS | 40.0% | |
CAGTGACCAAAAACATGTCT+GGG | - | chr3_1:19544450-19544469 | Msa0351950:CDS | 40.0% | |
! | TTCCAACCCAGACATGTTTT+TGG | + | chr3_1:19544459-19544478 | None:intergenic | 40.0% |
GTTCGGAGCTTGTGATTTAC+TGG | + | chr3_1:19539337-19539356 | None:intergenic | 45.0% | |
TGTAGCACCAACACTTCTGA+TGG | - | chr3_1:19539742-19539761 | Msa0351950:CDS | 45.0% | |
! | ACACCTTCCATCAGAAGTGT+TGG | + | chr3_1:19539752-19539771 | None:intergenic | 45.0% |
GTCGGACATCAGACACATAT+TGG | + | chr3_1:19540075-19540094 | None:intergenic | 45.0% | |
!! | ATGAAGCACTGACACTGACA+TGG | + | chr3_1:19540180-19540199 | None:intergenic | 45.0% |
TGTCAGTGTCAGTGCTTCAT+AGG | - | chr3_1:19540180-19540199 | Msa0351950:intron | 45.0% | |
CCCCATTCCATGTTCTTATG+TGG | + | chr3_1:19540590-19540609 | None:intergenic | 45.0% | |
CATAAGAACATGGAATGGGG+TGG | - | chr3_1:19540590-19540609 | Msa0351950:intron | 45.0% | |
!! | GGTTACCAGGGTATTTTGTG+TGG | - | chr3_1:19540914-19540933 | Msa0351950:intron | 45.0% |
ACTTCCCACACAAAATACCC+TGG | + | chr3_1:19540922-19540941 | None:intergenic | 45.0% | |
!! | AGGGTATTTTGTGTGGGAAG+TGG | - | chr3_1:19540921-19540940 | Msa0351950:intron | 45.0% |
GGAGCAGTGTTGTCAGATAT+CGG | + | chr3_1:19541239-19541258 | None:intergenic | 45.0% | |
GTATGGAGGGAGTTTGTATG+GGG | - | chr3_1:19541364-19541383 | Msa0351950:intron | 45.0% | |
CCATCTGCAATATGCCTTTC+TGG | + | chr3_1:19541632-19541651 | None:intergenic | 45.0% | |
! | CCAGAAAGGCATATTGCAGA+TGG | - | chr3_1:19541629-19541648 | Msa0351950:intron | 45.0% |
AAGGCATATTGCAGATGGTG+CGG | - | chr3_1:19541634-19541653 | Msa0351950:intron | 45.0% | |
!! | TTTTACAGGGGTGTAGTACC+TGG | - | chr3_1:19541994-19542013 | Msa0351950:intron | 45.0% |
! | GCGACTGGTGCAACATATTT+TGG | - | chr3_1:19542033-19542052 | Msa0351950:intron | 45.0% |
CATTTCATTGCTGGAGCTGT+TGG | - | chr3_1:19542120-19542139 | Msa0351950:CDS | 45.0% | |
! | GAGCTGTTGGTAAGCTGATT+TGG | - | chr3_1:19542133-19542152 | Msa0351950:CDS | 45.0% |
CACATTCTTGAGTCACTCAG+GGG | - | chr3_1:19542200-19542219 | Msa0351950:intron | 45.0% | |
TACGTAATGCAATGCTGCTG+TGG | - | chr3_1:19542430-19542449 | Msa0351950:intron | 45.0% | |
CTTCATTGCAGTAGAACTCC+AGG | + | chr3_1:19542654-19542673 | None:intergenic | 45.0% | |
CAGCTCAATATGCAGAACAC+AGG | - | chr3_1:19542739-19542758 | Msa0351950:intron | 45.0% | |
! | CGACAACTTATTGGTGCCTA+GGG | + | chr3_1:19542917-19542936 | None:intergenic | 45.0% |
! | ACGACAACTTATTGGTGCCT+AGG | + | chr3_1:19542918-19542937 | None:intergenic | 45.0% |
GAGCCACAACAGTTCACTAT+TGG | - | chr3_1:19543033-19543052 | Msa0351950:intron | 45.0% | |
AATACCATCAGGCCAGCAAA+TGG | + | chr3_1:19543266-19543285 | None:intergenic | 45.0% | |
TGCATATCTCACCACTCCTT+TGG | - | chr3_1:19543600-19543619 | Msa0351950:intron | 45.0% | |
!!! | CTAGTTTTGACGACGTCCAA+AGG | + | chr3_1:19543619-19543638 | None:intergenic | 45.0% |
CTTTGGACGTCGTCAAAACT+AGG | - | chr3_1:19543617-19543636 | Msa0351950:intron | 45.0% | |
CAAAACTAGGCTGCAAGTTC+AGG | - | chr3_1:19543630-19543649 | Msa0351950:intron | 45.0% | |
ATACATGTGTACCTGCCATC+AGG | - | chr3_1:19543709-19543728 | Msa0351950:intron | 45.0% | |
TTAAGTGGTATCCTGATGGC+AGG | + | chr3_1:19543723-19543742 | None:intergenic | 45.0% | |
AACGTTGCTTGGAACATGTC+TGG | - | chr3_1:19543755-19543774 | Msa0351950:intron | 45.0% | |
! | ATGGGCTAAGGAAGGAGTTA+AGG | - | chr3_1:19544011-19544030 | Msa0351950:intron | 45.0% |
TGGGCTAAGGAAGGAGTTAA+GGG | - | chr3_1:19544012-19544031 | Msa0351950:intron | 45.0% | |
GGAGTTAAGGGGATGTTTAG+GGG | - | chr3_1:19544024-19544043 | Msa0351950:intron | 45.0% | |
GAATGTACCACGCAATTCTC+GGG | + | chr3_1:19544056-19544075 | None:intergenic | 45.0% | |
GGAATGTACCACGCAATTCT+CGG | + | chr3_1:19544057-19544076 | None:intergenic | 45.0% | |
GAGAATTGCGTGGTACATTC+CGG | - | chr3_1:19544056-19544075 | Msa0351950:intron | 45.0% | |
GAGAAATTCCACAGCCATGA+AGG | + | chr3_1:19544094-19544113 | None:intergenic | 45.0% | |
!!! | GTTTTTGGTCACTGCCATAG+AGG | + | chr3_1:19544444-19544463 | None:intergenic | 45.0% |
GCAGTGACCAAAAACATGTC+TGG | - | chr3_1:19544449-19544468 | Msa0351950:CDS | 45.0% | |
GACCAAAAACATGTCTGGGT+TGG | - | chr3_1:19544454-19544473 | Msa0351950:CDS | 45.0% | |
!! | AAATATATGATTATTATAAA+GGG | - | chr3_1:19542702-19542721 | Msa0351950:intron | 5.0% |
TGGTCGTGAGAAACGTGGTT+CGG | + | chr3_1:19539354-19539373 | None:intergenic | 50.0% | |
GCACCAACACTTCTGATGGA+AGG | - | chr3_1:19539746-19539765 | Msa0351950:CDS | 50.0% | |
GTTGGTATCAGGGTCATGTC+TGG | - | chr3_1:19539849-19539868 | Msa0351950:intron | 50.0% | |
ACTGACACTGACATGGACAC+CGG | + | chr3_1:19540173-19540192 | None:intergenic | 50.0% | |
ACGGAGAGGTAGCGAAATTG+TGG | + | chr3_1:19540259-19540278 | None:intergenic | 50.0% | |
ATGCAGGTACAGAAACGGAG+AGG | + | chr3_1:19540273-19540292 | None:intergenic | 50.0% | |
TATGCTACTGCTGCGACTCA+TGG | + | chr3_1:19540479-19540498 | None:intergenic | 50.0% | |
TGAGTCGCAGCAGTAGCATA+CGG | - | chr3_1:19540479-19540498 | Msa0351950:intron | 50.0% | |
CAGTCTTACACCGACATCAG+AGG | + | chr3_1:19540843-19540862 | None:intergenic | 50.0% | |
!! | TCATGGTGGATAGCAGACCA+TGG | - | chr3_1:19541119-19541138 | Msa0351950:CDS | 50.0% |
CCACAATGCCATATATCGGC+AGG | + | chr3_1:19541168-19541187 | None:intergenic | 50.0% | |
CCTGCCGATATATGGCATTG+TGG | - | chr3_1:19541165-19541184 | Msa0351950:CDS | 50.0% | |
GGCGCCACAATGCCATATAT+CGG | + | chr3_1:19541172-19541191 | None:intergenic | 50.0% | |
GTTTGTATGGGGAGCTGTTG+CGG | - | chr3_1:19541375-19541394 | Msa0351950:intron | 50.0% | |
TTTGTATGGGGAGCTGTTGC+GGG | - | chr3_1:19541376-19541395 | Msa0351950:intron | 50.0% | |
TGGGGAAGGAATGATGCATC+CGG | - | chr3_1:19541405-19541424 | Msa0351950:intron | 50.0% | |
!! | GGTGTAGTACCTGGTGTTAC+TGG | - | chr3_1:19542003-19542022 | Msa0351950:intron | 50.0% |
GAGGATTCACATCCTAGCCT+TGG | - | chr3_1:19542084-19542103 | Msa0351950:intron | 50.0% | |
!! | GATTCACATCCTAGCCTTGG+TGG | - | chr3_1:19542087-19542106 | Msa0351950:intron | 50.0% |
CAGCAATGAAATGTGCCCAG+TGG | + | chr3_1:19542113-19542132 | None:intergenic | 50.0% | |
CACTGGGCACATTTCATTGC+TGG | - | chr3_1:19542111-19542130 | Msa0351950:CDS | 50.0% | |
! | CGCTGCTTTATCACTTCGCA+TGG | + | chr3_1:19542605-19542624 | None:intergenic | 50.0% |
AAGCAGCGCATGCAAGTTCA+AGG | - | chr3_1:19542617-19542636 | Msa0351950:intron | 50.0% | |
TGCATATTGAGCTGCCTGCA+TGG | + | chr3_1:19542733-19542752 | None:intergenic | 50.0% | |
GTGAACTGTTGTGGCTCTTG+AGG | + | chr3_1:19543030-19543049 | None:intergenic | 50.0% | |
GCAAGGGATGTACCATTTGC+TGG | - | chr3_1:19543251-19543270 | Msa0351950:intron | 50.0% | |
! | TGTACCATTTGCTGGCCTGA+TGG | - | chr3_1:19543259-19543278 | Msa0351950:intron | 50.0% |
!! | TTCCTTTGAGGGCCTGGTTT+TGG | - | chr3_1:19543472-19543491 | Msa0351950:intron | 50.0% |
!! | TCCTTTGAGGGCCTGGTTTT+GGG | - | chr3_1:19543473-19543492 | Msa0351950:intron | 50.0% |
CAGCTAATCCTCCCAAAACC+AGG | + | chr3_1:19543487-19543506 | None:intergenic | 50.0% | |
!!! | CTGGTTTTGGGAGGATTAGC+TGG | - | chr3_1:19543485-19543504 | Msa0351950:intron | 50.0% |
!!! | GTTTTGGGAGGATTAGCTGG+TGG | - | chr3_1:19543488-19543507 | Msa0351950:intron | 50.0% |
TTTGACGACGTCCAAAGGAG+TGG | + | chr3_1:19543614-19543633 | None:intergenic | 50.0% | |
GGGCTAAGGAAGGAGTTAAG+GGG | - | chr3_1:19544013-19544032 | Msa0351950:intron | 50.0% | |
!! | ATGAAGGTAAGCGCTGAAGC+CGG | + | chr3_1:19544078-19544097 | None:intergenic | 50.0% |
ATGGACACCGGACACTGACA+TGG | + | chr3_1:19540161-19540180 | None:intergenic | 55.0% | |
! | GAGCTGTTGCGGGTGCTTTT+GGG | - | chr3_1:19541386-19541405 | Msa0351950:intron | 55.0% |
! | AGCTGTTGCGGGTGCTTTTG+GGG | - | chr3_1:19541387-19541406 | Msa0351950:intron | 55.0% |
CGGTCTGTCTGGAAGGTTGA+TGG | - | chr3_1:19541654-19541673 | Msa0351950:CDS | 55.0% | |
GCAAGAGAGCCAGTAACACC+AGG | + | chr3_1:19542015-19542034 | None:intergenic | 55.0% | |
!! | GTTACTGGCTCTCTTGCGAC+TGG | - | chr3_1:19542018-19542037 | Msa0351950:intron | 55.0% |
CAGAGTACGGGAAGCGAAGA+TGG | - | chr3_1:19543420-19543439 | Msa0351950:intron | 55.0% | |
TCCCAAAACCAGGCCCTCAA+AGG | + | chr3_1:19543477-19543496 | None:intergenic | 55.0% | |
!!! | TTTGAGGGCCTGGTTTTGGG+AGG | - | chr3_1:19543476-19543495 | Msa0351950:intron | 55.0% |
GGCTTCAGCGCTTACCTTCA+TGG | - | chr3_1:19544077-19544096 | Msa0351950:intron | 55.0% | |
AGCGCTTACCTTCATGGCTG+TGG | - | chr3_1:19544083-19544102 | Msa0351950:intron | 55.0% | |
CCGGACACTGACATGGACAC+CGG | + | chr3_1:19540154-19540173 | None:intergenic | 60.0% | |
CCGGTGTCCATGTCAGTGTC+CGG | - | chr3_1:19540151-19540170 | Msa0351950:CDS | 60.0% | |
! | GGAGCTGTTGCGGGTGCTTT+TGG | - | chr3_1:19541385-19541404 | Msa0351950:intron | 60.0% |
!! | GTTGCGGGTGCTTTTGGGGA+AGG | - | chr3_1:19541391-19541410 | Msa0351950:intron | 60.0% |
TGCAGATGGTGCGGTCTGTC+TGG | - | chr3_1:19541643-19541662 | Msa0351950:intron | 60.0% | |
GATGGTGCGGTCTGTCTGGA+AGG | - | chr3_1:19541647-19541666 | Msa0351950:CDS | 60.0% | |
!! | ATCCTAGCCTTGGTGGCCAC+TGG | - | chr3_1:19542094-19542113 | Msa0351950:intron | 60.0% |
!! | TCCTAGCCTTGGTGGCCACT+GGG | - | chr3_1:19542095-19542114 | Msa0351950:intron | 60.0% |
AATGTGCCCAGTGGCCACCA+AGG | + | chr3_1:19542104-19542123 | None:intergenic | 60.0% | |
GTAGCGTCCCGAGAATTGCG+TGG | - | chr3_1:19544046-19544065 | Msa0351950:intron | 60.0% | |
GGAATGGGGTGGCAATGCCC+AGG | - | chr3_1:19540601-19540620 | Msa0351950:intron | 65.0% | |
GCCCAGTGGCCACCAAGGCT+AGG | + | chr3_1:19542099-19542118 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 19539219 | 19544568 | 19539219 | ID=Msa0351950;Name=Msa0351950 |
chr3_1 | mRNA | 19539219 | 19544568 | 19539219 | ID=Msa0351950-mRNA-1;Parent=Msa0351950;Name=Msa0351950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=93|1|1|1|1|1|9|359|358 |
chr3_1 | exon | 19539219 | 19539809 | 19539219 | ID=Msa0351950-mRNA-1:exon:4574;Parent=Msa0351950-mRNA-1 |
chr3_1 | exon | 19540122 | 19540194 | 19540122 | ID=Msa0351950-mRNA-1:exon:4573;Parent=Msa0351950-mRNA-1 |
chr3_1 | exon | 19540278 | 19540398 | 19540278 | ID=Msa0351950-mRNA-1:exon:4572;Parent=Msa0351950-mRNA-1 |
chr3_1 | exon | 19540507 | 19540552 | 19540507 | ID=Msa0351950-mRNA-1:exon:4571;Parent=Msa0351950-mRNA-1 |
chr3_1 | exon | 19541004 | 19541214 | 19541004 | ID=Msa0351950-mRNA-1:exon:4570;Parent=Msa0351950-mRNA-1 |
chr3_1 | exon | 19541646 | 19541795 | 19541646 | ID=Msa0351950-mRNA-1:exon:4569;Parent=Msa0351950-mRNA-1 |
chr3_1 | exon | 19542103 | 19542160 | 19542103 | ID=Msa0351950-mRNA-1:exon:4568;Parent=Msa0351950-mRNA-1 |
chr3_1 | exon | 19542307 | 19542422 | 19542307 | ID=Msa0351950-mRNA-1:exon:4567;Parent=Msa0351950-mRNA-1 |
chr3_1 | exon | 19544406 | 19544568 | 19544406 | ID=Msa0351950-mRNA-1:exon:4566;Parent=Msa0351950-mRNA-1 |
chr3_1 | five_prime_UTR | 19544476 | 19544568 | 19544476 | ID=Msa0351950-mRNA-1:five_prime_utr;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19544406 | 19544475 | 19544406 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19542307 | 19542422 | 19542307 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19542103 | 19542160 | 19542103 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19541646 | 19541795 | 19541646 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19541004 | 19541214 | 19541004 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19540507 | 19540552 | 19540507 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19540278 | 19540398 | 19540278 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19540122 | 19540194 | 19540122 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | CDS | 19539578 | 19539809 | 19539578 | ID=Msa0351950-mRNA-1:cds;Parent=Msa0351950-mRNA-1 |
chr3_1 | three_prime_UTR | 19539219 | 19539577 | 19539219 | ID=Msa0351950-mRNA-1:three_prime_utr;Parent=Msa0351950-mRNA-1 |
Gene Sequence |
Protein sequence |