AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1335940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335940 MtrunA17_Chr5g0408121 97.744 133 3 0 1 133 1 133 2.62e-93 265
Msa1335940 MtrunA17_Chr5g0408111 37.662 77 48 0 26 102 54 130 1.11e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCAAACTCTACAGTTTC+CGG 0.200149 tig0000730:+13425 Msa1335940:CDS
AACTTGGTGCCCGTTTGTTT+TGG 0.276872 tig0000730:-13173 None:intergenic
ATGAATCCGGCGGGTTTAAC+AGG 0.280966 tig0000730:+13253 Msa1335940:CDS
GGAAATGATGGAAGCAATTT+CGG 0.295914 tig0000730:-13398 None:intergenic
TTTGAGTATTGAAACTAGTT+TGG 0.342271 tig0000730:+14739 Msa1335940:three_prime_UTR
ATCTAACTTGGTTCCTATCT+AGG 0.344574 tig0000730:-14636 None:intergenic
CGCCGGATTCATCCTTCTGC+TGG 0.358107 tig0000730:-13242 None:intergenic
CATGATTTCGGCGACGGCTT+TGG 0.360532 tig0000730:-13299 None:intergenic
CAGTGAACTCTGCACTTTCA+TGG 0.368977 tig0000730:+13354 Msa1335940:CDS
CTGCATGATAATTTCATGAA+TGG 0.375196 tig0000730:+14696 Msa1335940:three_prime_UTR
CATCAAACTCTACAGTTTCC+GGG 0.376717 tig0000730:+13426 Msa1335940:CDS
ATCGCACCCTGGCTGAATTC+CGG 0.377231 tig0000730:-14498 None:intergenic
TTTGCCGACACCCATGATTT+CGG 0.381159 tig0000730:-13311 None:intergenic
TTTGATGAACTTGGAAATGA+TGG 0.402949 tig0000730:-13410 None:intergenic
ACTGGTAGCTTTGCGTGTCT+TGG 0.404946 tig0000730:-13335 None:intergenic
CAAAGCCGTCGCCGAAATCA+TGG 0.409452 tig0000730:+13300 Msa1335940:CDS
CAGAAAATGAATATTGTCAT+TGG 0.428328 tig0000730:-14777 None:intergenic
GTATCAAGAAAGACAAGCTT+TGG 0.428352 tig0000730:+14403 Msa1335940:CDS
ACTGTAGAGTTTGATGAACT+TGG 0.446589 tig0000730:-13419 None:intergenic
TGTCCCGTTTGCAACTAGTC+AGG 0.457794 tig0000730:+14808 Msa1335940:three_prime_UTR
GGGAAAGGCCAACAGAAGAA+AGG 0.464992 tig0000730:+14567 Msa1335940:CDS
GACAGAATCTTAGCAATCTC+AGG 0.466374 tig0000730:-14474 None:intergenic
TTTGTTGGTCCAAAACAAAC+GGG 0.476063 tig0000730:+13164 Msa1335940:five_prime_UTR
AAAATAATGAAGCAGCAAAC+GGG 0.496036 tig0000730:-14878 None:intergenic
TAATATCAAGGATACTAATA+CGG 0.503603 tig0000730:+14521 Msa1335940:CDS
TCTGTCTCCGGAATTCAGCC+AGG 0.504471 tig0000730:+14491 Msa1335940:CDS
GACACCCATGATTTCGGCGA+CGG 0.507275 tig0000730:-13305 None:intergenic
GGAAAGGCCAACAGAAGAAA+GGG 0.508550 tig0000730:+14568 Msa1335940:CDS
GATTGCTAAGATTCTGTCTC+CGG 0.511219 tig0000730:+14479 Msa1335940:CDS
AGTGAACTCTGCACTTTCAT+GGG 0.512210 tig0000730:+13355 Msa1335940:CDS
AAAACAAACGGGCACCAAGT+TGG 0.512519 tig0000730:+13175 Msa1335940:five_prime_UTR
AGCTTGTCTTTCTTGATACC+AGG 0.515565 tig0000730:-14399 None:intergenic
TATGGTGTTGTGCAGAGTCC+TGG 0.516143 tig0000730:+14381 Msa1335940:intron
CCAGGGTGCGATTAATATCA+AGG 0.519238 tig0000730:+14509 Msa1335940:CDS
CATGAAAGTGCAGAGTTCAC+TGG 0.524418 tig0000730:-13353 None:intergenic
ATAGCCTGACTAGTTGCAAA+CGG 0.526284 tig0000730:-14812 None:intergenic
ATCCAGCAGAAGGATGAATC+CGG 0.526821 tig0000730:+13240 Msa1335940:exon
TAGCCTGACTAGTTGCAAAC+GGG 0.535761 tig0000730:-14811 None:intergenic
CTTCGCCCTGTTAAACCCGC+CGG 0.548257 tig0000730:-13259 None:intergenic
TATCAAGAAAGACAAGCTTT+GGG 0.550356 tig0000730:+14404 Msa1335940:CDS
AGGAAGTGGAGGCATGTGGT+TGG 0.560814 tig0000730:+14601 Msa1335940:exon
TCTTCCGCGGATAACACAAA+GGG 0.561908 tig0000730:+14546 Msa1335940:CDS
AAAGCCGTCGCCGAAATCAT+GGG 0.576114 tig0000730:+13301 Msa1335940:CDS
GCGGATAACACAAAGGGGAA+AGG 0.582569 tig0000730:+14552 Msa1335940:CDS
CTAGTTTGGCTATTGCCTTG+TGG 0.596708 tig0000730:+14753 Msa1335940:three_prime_UTR
TTCTTCCGCGGATAACACAA+AGG 0.602214 tig0000730:+14545 Msa1335940:CDS
CGGCGGGTTTAACAGGGCGA+AGG 0.602549 tig0000730:+13260 Msa1335940:CDS
TGAATCCGGCGGGTTTAACA+GGG 0.604481 tig0000730:+13254 Msa1335940:CDS
CGGGCACCAAGTTGGATCAA+CGG 0.605928 tig0000730:+13183 Msa1335940:five_prime_UTR
GTGCTGCCGTTGATCCAACT+TGG 0.607537 tig0000730:-13189 None:intergenic
GTCGCCGAAATCATGGGTGT+CGG 0.610089 tig0000730:+13307 Msa1335940:CDS
AGCAGAAGGATGAATCCGGC+GGG 0.612519 tig0000730:+13244 Msa1335940:exon
AATATTGTCATTGGACCACA+AGG 0.613637 tig0000730:-14768 None:intergenic
AAATAGGAAGTGGAGGCATG+TGG 0.631407 tig0000730:+14597 Msa1335940:exon
AATTTGCAAACACTGTTGCG+TGG 0.632781 tig0000730:+14432 Msa1335940:CDS
TTGCGTGGCAGAAACAGCGT+TGG 0.639499 tig0000730:+14447 Msa1335940:CDS
ATTTCGGAACGAGATTGATG+AGG 0.642540 tig0000730:-13382 None:intergenic
CTGTCTCCGGAATTCAGCCA+GGG 0.642587 tig0000730:+14492 Msa1335940:CDS
AGGGCGAAGGAGCATGTCGA+CGG 0.655015 tig0000730:+13273 Msa1335940:CDS
CAGCAGAAGGATGAATCCGG+CGG 0.656372 tig0000730:+13243 Msa1335940:exon
TACTAATACGGATTCTTCCG+CGG 0.657291 tig0000730:+14533 Msa1335940:CDS
CCTTGATATTAATCGCACCC+TGG 0.662781 tig0000730:-14509 None:intergenic
TTTCCCCTTTGTGTTATCCG+CGG 0.666626 tig0000730:-14550 None:intergenic
GGCAGCACATCACAAATCAG+AGG 0.678094 tig0000730:+13204 Msa1335940:five_prime_UTR
CTTCCGCGGATAACACAAAG+GGG 0.722706 tig0000730:+14547 Msa1335940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGAAAAAAAAGAAAAAT+GGG - tig0000730:13463-13482 None:intergenic 10.0%
!! ATAATGAAAAAAAAGAAAAA+TGG - tig0000730:13464-13483 None:intergenic 10.0%
!! CTATAATAAAAGATAAAATA+AGG - tig0000730:14201-14220 None:intergenic 10.0%
!! TAATGAAAAAAAAGAAAAAT+GGG - tig0000730:13463-13482 None:intergenic 10.0%
!! ATAATGAAAAAAAAGAAAAA+TGG - tig0000730:13464-13483 None:intergenic 10.0%
!! CTATAATAAAAGATAAAATA+AGG - tig0000730:14201-14220 None:intergenic 10.0%
!!! TTTATTTACTTTTGCTTATT+TGG + tig0000730:14350-14369 Msa1335940:intron 15.0%
!!! TTTATTTACTTTTGCTTATT+TGG + tig0000730:14350-14369 Msa1335940:intron 15.0%
!! TCAAATAAACCAATTCAAAT+AGG - tig0000730:13830-13849 None:intergenic 20.0%
!!! TAAGTTTGTTTCTATAACAA+AGG - tig0000730:14110-14129 None:intergenic 20.0%
!! ATTAAGCTGTTTATAAAAAC+AGG + tig0000730:14144-14163 Msa1335940:intron 20.0%
!! TTAAGCTGTTTATAAAAACA+GGG + tig0000730:14145-14164 Msa1335940:intron 20.0%
!! CTTTCCATAAAATAAGATAT+AGG - tig0000730:14171-14190 None:intergenic 20.0%
!! TAATATCAAGGATACTAATA+CGG + tig0000730:14521-14540 Msa1335940:CDS 20.0%
!! AAAGTTTCAAAAATCTAACT+TGG - tig0000730:14651-14670 None:intergenic 20.0%
!! TCAAATAAACCAATTCAAAT+AGG - tig0000730:13830-13849 None:intergenic 20.0%
!!! TAAGTTTGTTTCTATAACAA+AGG - tig0000730:14110-14129 None:intergenic 20.0%
!! ATTAAGCTGTTTATAAAAAC+AGG + tig0000730:14144-14163 Msa1335940:intron 20.0%
!! TTAAGCTGTTTATAAAAACA+GGG + tig0000730:14145-14164 Msa1335940:intron 20.0%
!! CTTTCCATAAAATAAGATAT+AGG - tig0000730:14171-14190 None:intergenic 20.0%
!! TAATATCAAGGATACTAATA+CGG + tig0000730:14521-14540 Msa1335940:CDS 20.0%
!! AAAGTTTCAAAAATCTAACT+TGG - tig0000730:14651-14670 None:intergenic 20.0%
!! TAAACTATCTCTGAAAAACA+TGG - tig0000730:13539-13558 None:intergenic 25.0%
! AGATTAAAGACTAATCAGTA+GGG - tig0000730:13702-13721 None:intergenic 25.0%
! AAGATTAAAGACTAATCAGT+AGG - tig0000730:13703-13722 None:intergenic 25.0%
! TTGAAAATAATCACTAGTCA+GGG - tig0000730:13789-13808 None:intergenic 25.0%
! TTTGAAAATAATCACTAGTC+AGG - tig0000730:13790-13809 None:intergenic 25.0%
!! TTTTCATAAGTTCTCTCAAA+CGG - tig0000730:13974-13993 None:intergenic 25.0%
!! TACTTTTGCTTATTTGGAAA+TGG + tig0000730:14356-14375 Msa1335940:intron 25.0%
!!! GTTTTTTTCTATTCCTAGAT+AGG + tig0000730:14623-14642 Msa1335940:three_prime_UTR 25.0%
!!! TTTGAGTATTGAAACTAGTT+TGG + tig0000730:14739-14758 Msa1335940:three_prime_UTR 25.0%
! CAGAAAATGAATATTGTCAT+TGG - tig0000730:14780-14799 None:intergenic 25.0%
! AAAAATAATGAAGCAGCAAA+CGG - tig0000730:14882-14901 None:intergenic 25.0%
!! TAAACTATCTCTGAAAAACA+TGG - tig0000730:13539-13558 None:intergenic 25.0%
! AGATTAAAGACTAATCAGTA+GGG - tig0000730:13702-13721 None:intergenic 25.0%
! AAGATTAAAGACTAATCAGT+AGG - tig0000730:13703-13722 None:intergenic 25.0%
! TTGAAAATAATCACTAGTCA+GGG - tig0000730:13789-13808 None:intergenic 25.0%
! TTTGAAAATAATCACTAGTC+AGG - tig0000730:13790-13809 None:intergenic 25.0%
!! TTTTCATAAGTTCTCTCAAA+CGG - tig0000730:13974-13993 None:intergenic 25.0%
!! TACTTTTGCTTATTTGGAAA+TGG + tig0000730:14356-14375 Msa1335940:intron 25.0%
!!! GTTTTTTTCTATTCCTAGAT+AGG + tig0000730:14623-14642 Msa1335940:three_prime_UTR 25.0%
!!! TTTGAGTATTGAAACTAGTT+TGG + tig0000730:14739-14758 Msa1335940:three_prime_UTR 25.0%
! CAGAAAATGAATATTGTCAT+TGG - tig0000730:14780-14799 None:intergenic 25.0%
! AAAAATAATGAAGCAGCAAA+CGG - tig0000730:14882-14901 None:intergenic 25.0%
! TTTTGTTGGTCCAAAACAAA+CGG + tig0000730:13163-13182 Msa1335940:five_prime_UTR 30.0%
TTTGATGAACTTGGAAATGA+TGG - tig0000730:13413-13432 None:intergenic 30.0%
TCTGAAAAACATGGAAATGA+TGG - tig0000730:13530-13549 None:intergenic 30.0%
ATTAAAGACTAATCAGTAGG+GGG - tig0000730:13700-13719 None:intergenic 30.0%
GATTAAAGACTAATCAGTAG+GGG - tig0000730:13701-13720 None:intergenic 30.0%
TTGAGAGAACTTATGAAAAC+AGG + tig0000730:13975-13994 Msa1335940:intron 30.0%
!!! AGGGCCTATATCTTATTTTA+TGG + tig0000730:14164-14183 Msa1335940:intron 30.0%
GCTTATTTGGAAATGGTATA+TGG + tig0000730:14363-14382 Msa1335940:intron 30.0%
TATCAAGAAAGACAAGCTTT+GGG + tig0000730:14404-14423 Msa1335940:CDS 30.0%
GAAGAAAGGGAAAAAGAAAT+AGG + tig0000730:14581-14600 Msa1335940:CDS 30.0%
CTGCATGATAATTTCATGAA+TGG + tig0000730:14696-14715 Msa1335940:three_prime_UTR 30.0%
AAAATAATGAAGCAGCAAAC+GGG - tig0000730:14881-14900 None:intergenic 30.0%
! TTTTGTTGGTCCAAAACAAA+CGG + tig0000730:13163-13182 Msa1335940:five_prime_UTR 30.0%
TTTGATGAACTTGGAAATGA+TGG - tig0000730:13413-13432 None:intergenic 30.0%
TCTGAAAAACATGGAAATGA+TGG - tig0000730:13530-13549 None:intergenic 30.0%
ATTAAAGACTAATCAGTAGG+GGG - tig0000730:13700-13719 None:intergenic 30.0%
GATTAAAGACTAATCAGTAG+GGG - tig0000730:13701-13720 None:intergenic 30.0%
TTGAGAGAACTTATGAAAAC+AGG + tig0000730:13975-13994 Msa1335940:intron 30.0%
!!! AGGGCCTATATCTTATTTTA+TGG + tig0000730:14164-14183 Msa1335940:intron 30.0%
GCTTATTTGGAAATGGTATA+TGG + tig0000730:14363-14382 Msa1335940:intron 30.0%
TATCAAGAAAGACAAGCTTT+GGG + tig0000730:14404-14423 Msa1335940:CDS 30.0%
GAAGAAAGGGAAAAAGAAAT+AGG + tig0000730:14581-14600 Msa1335940:CDS 30.0%
CTGCATGATAATTTCATGAA+TGG + tig0000730:14696-14715 Msa1335940:three_prime_UTR 30.0%
AAAATAATGAAGCAGCAAAC+GGG - tig0000730:14881-14900 None:intergenic 30.0%
TTTGTTGGTCCAAAACAAAC+GGG + tig0000730:13164-13183 Msa1335940:five_prime_UTR 35.0%
! GGAAATGATGGAAGCAATTT+CGG - tig0000730:13401-13420 None:intergenic 35.0%
ACTGTAGAGTTTGATGAACT+TGG - tig0000730:13422-13441 None:intergenic 35.0%
TCATCAAACTCTACAGTTTC+CGG + tig0000730:13425-13444 Msa1335940:CDS 35.0%
AAATGGGAAGAATTGAAACC+CGG - tig0000730:13447-13466 None:intergenic 35.0%
GAGAACATTGATCAAACAGT+TGG - tig0000730:13493-13512 None:intergenic 35.0%
AACCATGAGCCTATTTGAAT+TGG + tig0000730:13818-13837 Msa1335940:intron 35.0%
AACCAATTCAAATAGGCTCA+TGG - tig0000730:13823-13842 None:intergenic 35.0%
CAAGTGCTTGTTTCAATACA+TGG - tig0000730:13859-13878 None:intergenic 35.0%
! AGCGATAAGCTCTTTTCATA+AGG - tig0000730:14058-14077 None:intergenic 35.0%
GGATAAACAACTTCATTGAG+TGG - tig0000730:14275-14294 None:intergenic 35.0%
GTATCAAGAAAGACAAGCTT+TGG + tig0000730:14403-14422 Msa1335940:CDS 35.0%
! TCTTTTTCCCTTTCTTCTGT+TGG - tig0000730:14578-14597 None:intergenic 35.0%
AGGGAAAAAGAAATAGGAAG+TGG + tig0000730:14587-14606 Msa1335940:exon 35.0%
GAAAAAGAAATAGGAAGTGG+AGG + tig0000730:14590-14609 Msa1335940:exon 35.0%
ATCTAACTTGGTTCCTATCT+AGG - tig0000730:14639-14658 None:intergenic 35.0%
AATATTGTCATTGGACCACA+AGG - tig0000730:14771-14790 None:intergenic 35.0%
TTTGTTGGTCCAAAACAAAC+GGG + tig0000730:13164-13183 Msa1335940:five_prime_UTR 35.0%
! GGAAATGATGGAAGCAATTT+CGG - tig0000730:13401-13420 None:intergenic 35.0%
ACTGTAGAGTTTGATGAACT+TGG - tig0000730:13422-13441 None:intergenic 35.0%
TCATCAAACTCTACAGTTTC+CGG + tig0000730:13425-13444 Msa1335940:CDS 35.0%
AAATGGGAAGAATTGAAACC+CGG - tig0000730:13447-13466 None:intergenic 35.0%
GAGAACATTGATCAAACAGT+TGG - tig0000730:13493-13512 None:intergenic 35.0%
AACCATGAGCCTATTTGAAT+TGG + tig0000730:13818-13837 Msa1335940:intron 35.0%
AACCAATTCAAATAGGCTCA+TGG - tig0000730:13823-13842 None:intergenic 35.0%
CAAGTGCTTGTTTCAATACA+TGG - tig0000730:13859-13878 None:intergenic 35.0%
! AGCGATAAGCTCTTTTCATA+AGG - tig0000730:14058-14077 None:intergenic 35.0%
GGATAAACAACTTCATTGAG+TGG - tig0000730:14275-14294 None:intergenic 35.0%
GTATCAAGAAAGACAAGCTT+TGG + tig0000730:14403-14422 Msa1335940:CDS 35.0%
! TCTTTTTCCCTTTCTTCTGT+TGG - tig0000730:14578-14597 None:intergenic 35.0%
AGGGAAAAAGAAATAGGAAG+TGG + tig0000730:14587-14606 Msa1335940:exon 35.0%
GAAAAAGAAATAGGAAGTGG+AGG + tig0000730:14590-14609 Msa1335940:exon 35.0%
ATCTAACTTGGTTCCTATCT+AGG - tig0000730:14639-14658 None:intergenic 35.0%
AATATTGTCATTGGACCACA+AGG - tig0000730:14771-14790 None:intergenic 35.0%
GAAGACAAAAATCCAGCAGA+AGG + tig0000730:13230-13249 Msa1335940:five_prime_UTR 40.0%
AGTGAACTCTGCACTTTCAT+GGG + tig0000730:13355-13374 Msa1335940:CDS 40.0%
ATTTCGGAACGAGATTGATG+AGG - tig0000730:13385-13404 None:intergenic 40.0%
CATCAAACTCTACAGTTTCC+GGG + tig0000730:13426-13445 Msa1335940:CDS 40.0%
TCACCCACTTAATCACTGAT+AGG + tig0000730:13738-13757 Msa1335940:intron 40.0%
CACCCACTTAATCACTGATA+GGG + tig0000730:13739-13758 Msa1335940:intron 40.0%
GTCCCTATCAGTGATTAAGT+GGG - tig0000730:13744-13763 None:intergenic 40.0%
AGTCCCTATCAGTGATTAAG+TGG - tig0000730:13745-13764 None:intergenic 40.0%
TTGAGTGGTTATAGCACAAG+CGG - tig0000730:14260-14279 None:intergenic 40.0%
CACTCTTACTTAGGCTCATT+TGG - tig0000730:14296-14315 None:intergenic 40.0%
CAATGGCAACACTCTTACTT+AGG - tig0000730:14305-14324 None:intergenic 40.0%
CTTTCACTTTAGTCGCTCAA+TGG - tig0000730:14322-14341 None:intergenic 40.0%
AGCTTGTCTTTCTTGATACC+AGG - tig0000730:14402-14421 None:intergenic 40.0%
AATTTGCAAACACTGTTGCG+TGG + tig0000730:14432-14451 Msa1335940:CDS 40.0%
GACAGAATCTTAGCAATCTC+AGG - tig0000730:14477-14496 None:intergenic 40.0%
GATTGCTAAGATTCTGTCTC+CGG + tig0000730:14479-14498 Msa1335940:CDS 40.0%
TACTAATACGGATTCTTCCG+CGG + tig0000730:14533-14552 Msa1335940:CDS 40.0%
! ATAGCCTGACTAGTTGCAAA+CGG - tig0000730:14815-14834 None:intergenic 40.0%
GAAGACAAAAATCCAGCAGA+AGG + tig0000730:13230-13249 Msa1335940:five_prime_UTR 40.0%
AGTGAACTCTGCACTTTCAT+GGG + tig0000730:13355-13374 Msa1335940:CDS 40.0%
ATTTCGGAACGAGATTGATG+AGG - tig0000730:13385-13404 None:intergenic 40.0%
CATCAAACTCTACAGTTTCC+GGG + tig0000730:13426-13445 Msa1335940:CDS 40.0%
TCACCCACTTAATCACTGAT+AGG + tig0000730:13738-13757 Msa1335940:intron 40.0%
CACCCACTTAATCACTGATA+GGG + tig0000730:13739-13758 Msa1335940:intron 40.0%
GTCCCTATCAGTGATTAAGT+GGG - tig0000730:13744-13763 None:intergenic 40.0%
AGTCCCTATCAGTGATTAAG+TGG - tig0000730:13745-13764 None:intergenic 40.0%
TTGAGTGGTTATAGCACAAG+CGG - tig0000730:14260-14279 None:intergenic 40.0%
CACTCTTACTTAGGCTCATT+TGG - tig0000730:14296-14315 None:intergenic 40.0%
CAATGGCAACACTCTTACTT+AGG - tig0000730:14305-14324 None:intergenic 40.0%
CTTTCACTTTAGTCGCTCAA+TGG - tig0000730:14322-14341 None:intergenic 40.0%
AGCTTGTCTTTCTTGATACC+AGG - tig0000730:14402-14421 None:intergenic 40.0%
AATTTGCAAACACTGTTGCG+TGG + tig0000730:14432-14451 Msa1335940:CDS 40.0%
GACAGAATCTTAGCAATCTC+AGG - tig0000730:14477-14496 None:intergenic 40.0%
GATTGCTAAGATTCTGTCTC+CGG + tig0000730:14479-14498 Msa1335940:CDS 40.0%
TACTAATACGGATTCTTCCG+CGG + tig0000730:14533-14552 Msa1335940:CDS 40.0%
! ATAGCCTGACTAGTTGCAAA+CGG - tig0000730:14815-14834 None:intergenic 40.0%
!!! AACTTGGTGCCCGTTTGTTT+TGG - tig0000730:13176-13195 None:intergenic 45.0%
AAAACAAACGGGCACCAAGT+TGG + tig0000730:13175-13194 Msa1335940:five_prime_UTR 45.0%
ATCCAGCAGAAGGATGAATC+CGG + tig0000730:13240-13259 Msa1335940:exon 45.0%
TTTGCCGACACCCATGATTT+CGG - tig0000730:13314-13333 None:intergenic 45.0%
! CATGAAAGTGCAGAGTTCAC+TGG - tig0000730:13356-13375 None:intergenic 45.0%
CAGTGAACTCTGCACTTTCA+TGG + tig0000730:13354-13373 Msa1335940:CDS 45.0%
CCTTGATATTAATCGCACCC+TGG - tig0000730:14512-14531 None:intergenic 45.0%
CCAGGGTGCGATTAATATCA+AGG + tig0000730:14509-14528 Msa1335940:CDS 45.0%
TTCTTCCGCGGATAACACAA+AGG + tig0000730:14545-14564 Msa1335940:CDS 45.0%
TCTTCCGCGGATAACACAAA+GGG + tig0000730:14546-14565 Msa1335940:CDS 45.0%
TTTCCCCTTTGTGTTATCCG+CGG - tig0000730:14553-14572 None:intergenic 45.0%
GGAAAGGCCAACAGAAGAAA+GGG + tig0000730:14568-14587 Msa1335940:CDS 45.0%
! AAATAGGAAGTGGAGGCATG+TGG + tig0000730:14597-14616 Msa1335940:exon 45.0%
CTAGTTTGGCTATTGCCTTG+TGG + tig0000730:14753-14772 Msa1335940:three_prime_UTR 45.0%
! TAGCCTGACTAGTTGCAAAC+GGG - tig0000730:14814-14833 None:intergenic 45.0%
!!! AACTTGGTGCCCGTTTGTTT+TGG - tig0000730:13176-13195 None:intergenic 45.0%
AAAACAAACGGGCACCAAGT+TGG + tig0000730:13175-13194 Msa1335940:five_prime_UTR 45.0%
ATCCAGCAGAAGGATGAATC+CGG + tig0000730:13240-13259 Msa1335940:exon 45.0%
TTTGCCGACACCCATGATTT+CGG - tig0000730:13314-13333 None:intergenic 45.0%
! CATGAAAGTGCAGAGTTCAC+TGG - tig0000730:13356-13375 None:intergenic 45.0%
CAGTGAACTCTGCACTTTCA+TGG + tig0000730:13354-13373 Msa1335940:CDS 45.0%
CCTTGATATTAATCGCACCC+TGG - tig0000730:14512-14531 None:intergenic 45.0%
CCAGGGTGCGATTAATATCA+AGG + tig0000730:14509-14528 Msa1335940:CDS 45.0%
TTCTTCCGCGGATAACACAA+AGG + tig0000730:14545-14564 Msa1335940:CDS 45.0%
TCTTCCGCGGATAACACAAA+GGG + tig0000730:14546-14565 Msa1335940:CDS 45.0%
TTTCCCCTTTGTGTTATCCG+CGG - tig0000730:14553-14572 None:intergenic 45.0%
GGAAAGGCCAACAGAAGAAA+GGG + tig0000730:14568-14587 Msa1335940:CDS 45.0%
! AAATAGGAAGTGGAGGCATG+TGG + tig0000730:14597-14616 Msa1335940:exon 45.0%
CTAGTTTGGCTATTGCCTTG+TGG + tig0000730:14753-14772 Msa1335940:three_prime_UTR 45.0%
! TAGCCTGACTAGTTGCAAAC+GGG - tig0000730:14814-14833 None:intergenic 45.0%
GGCAGCACATCACAAATCAG+AGG + tig0000730:13204-13223 Msa1335940:five_prime_UTR 50.0%
! ATGAATCCGGCGGGTTTAAC+AGG + tig0000730:13253-13272 Msa1335940:CDS 50.0%
! TGAATCCGGCGGGTTTAACA+GGG + tig0000730:13254-13273 Msa1335940:CDS 50.0%
AAAGCCGTCGCCGAAATCAT+GGG + tig0000730:13301-13320 Msa1335940:CDS 50.0%
! ACTGGTAGCTTTGCGTGTCT+TGG - tig0000730:13338-13357 None:intergenic 50.0%
!! TATGGTGTTGTGCAGAGTCC+TGG + tig0000730:14381-14400 Msa1335940:intron 50.0%
CTTCCGCGGATAACACAAAG+GGG + tig0000730:14547-14566 Msa1335940:CDS 50.0%
GCGGATAACACAAAGGGGAA+AGG + tig0000730:14552-14571 Msa1335940:CDS 50.0%
GGGAAAGGCCAACAGAAGAA+AGG + tig0000730:14567-14586 Msa1335940:CDS 50.0%
TGTCCCGTTTGCAACTAGTC+AGG + tig0000730:14808-14827 Msa1335940:three_prime_UTR 50.0%
GGCAGCACATCACAAATCAG+AGG + tig0000730:13204-13223 Msa1335940:five_prime_UTR 50.0%
! ATGAATCCGGCGGGTTTAAC+AGG + tig0000730:13253-13272 Msa1335940:CDS 50.0%
! TGAATCCGGCGGGTTTAACA+GGG + tig0000730:13254-13273 Msa1335940:CDS 50.0%
AAAGCCGTCGCCGAAATCAT+GGG + tig0000730:13301-13320 Msa1335940:CDS 50.0%
! ACTGGTAGCTTTGCGTGTCT+TGG - tig0000730:13338-13357 None:intergenic 50.0%
!! TATGGTGTTGTGCAGAGTCC+TGG + tig0000730:14381-14400 Msa1335940:intron 50.0%
CTTCCGCGGATAACACAAAG+GGG + tig0000730:14547-14566 Msa1335940:CDS 50.0%
GCGGATAACACAAAGGGGAA+AGG + tig0000730:14552-14571 Msa1335940:CDS 50.0%
GGGAAAGGCCAACAGAAGAA+AGG + tig0000730:14567-14586 Msa1335940:CDS 50.0%
TGTCCCGTTTGCAACTAGTC+AGG + tig0000730:14808-14827 Msa1335940:three_prime_UTR 50.0%
! CGGGCACCAAGTTGGATCAA+CGG + tig0000730:13183-13202 Msa1335940:five_prime_UTR 55.0%
GTGCTGCCGTTGATCCAACT+TGG - tig0000730:13192-13211 None:intergenic 55.0%
CAGCAGAAGGATGAATCCGG+CGG + tig0000730:13243-13262 Msa1335940:exon 55.0%
AGCAGAAGGATGAATCCGGC+GGG + tig0000730:13244-13263 Msa1335940:exon 55.0%
CATGATTTCGGCGACGGCTT+TGG - tig0000730:13302-13321 None:intergenic 55.0%
CAAAGCCGTCGCCGAAATCA+TGG + tig0000730:13300-13319 Msa1335940:CDS 55.0%
GACACCCATGATTTCGGCGA+CGG - tig0000730:13308-13327 None:intergenic 55.0%
GTCGCCGAAATCATGGGTGT+CGG + tig0000730:13307-13326 Msa1335940:CDS 55.0%
TTGCGTGGCAGAAACAGCGT+TGG + tig0000730:14447-14466 Msa1335940:CDS 55.0%
TCTGTCTCCGGAATTCAGCC+AGG + tig0000730:14491-14510 Msa1335940:CDS 55.0%
CTGTCTCCGGAATTCAGCCA+GGG + tig0000730:14492-14511 Msa1335940:CDS 55.0%
ATCGCACCCTGGCTGAATTC+CGG - tig0000730:14501-14520 None:intergenic 55.0%
! AGGAAGTGGAGGCATGTGGT+TGG + tig0000730:14601-14620 Msa1335940:exon 55.0%
! CGGGCACCAAGTTGGATCAA+CGG + tig0000730:13183-13202 Msa1335940:five_prime_UTR 55.0%
GTGCTGCCGTTGATCCAACT+TGG - tig0000730:13192-13211 None:intergenic 55.0%
CAGCAGAAGGATGAATCCGG+CGG + tig0000730:13243-13262 Msa1335940:exon 55.0%
AGCAGAAGGATGAATCCGGC+GGG + tig0000730:13244-13263 Msa1335940:exon 55.0%
CATGATTTCGGCGACGGCTT+TGG - tig0000730:13302-13321 None:intergenic 55.0%
CAAAGCCGTCGCCGAAATCA+TGG + tig0000730:13300-13319 Msa1335940:CDS 55.0%
GACACCCATGATTTCGGCGA+CGG - tig0000730:13308-13327 None:intergenic 55.0%
GTCGCCGAAATCATGGGTGT+CGG + tig0000730:13307-13326 Msa1335940:CDS 55.0%
TTGCGTGGCAGAAACAGCGT+TGG + tig0000730:14447-14466 Msa1335940:CDS 55.0%
TCTGTCTCCGGAATTCAGCC+AGG + tig0000730:14491-14510 Msa1335940:CDS 55.0%
CTGTCTCCGGAATTCAGCCA+GGG + tig0000730:14492-14511 Msa1335940:CDS 55.0%
ATCGCACCCTGGCTGAATTC+CGG - tig0000730:14501-14520 None:intergenic 55.0%
! AGGAAGTGGAGGCATGTGGT+TGG + tig0000730:14601-14620 Msa1335940:exon 55.0%
CGCCGGATTCATCCTTCTGC+TGG - tig0000730:13245-13264 None:intergenic 60.0%
CTTCGCCCTGTTAAACCCGC+CGG - tig0000730:13262-13281 None:intergenic 60.0%
! AGGGCGAAGGAGCATGTCGA+CGG + tig0000730:13273-13292 Msa1335940:CDS 60.0%
CGCCGGATTCATCCTTCTGC+TGG - tig0000730:13245-13264 None:intergenic 60.0%
CTTCGCCCTGTTAAACCCGC+CGG - tig0000730:13262-13281 None:intergenic 60.0%
! AGGGCGAAGGAGCATGTCGA+CGG + tig0000730:13273-13292 Msa1335940:CDS 60.0%
! CGGCGGGTTTAACAGGGCGA+AGG + tig0000730:13260-13279 Msa1335940:CDS 65.0%
! CGGCGGGTTTAACAGGGCGA+AGG + tig0000730:13260-13279 Msa1335940:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0000730 gene 13151 14919 13151 ID=Msa1335940;Name=Msa1335940
tig0000730 mRNA 13151 14919 13151 ID=Msa1335940-mRNA-1;Parent=Msa1335940;Name=Msa1335940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=102|1|1|1|1|1|2|317|133
tig0000730 exon 13151 13447 13151 ID=Msa1335940-mRNA-1:exon:455;Parent=Msa1335940-mRNA-1
tig0000730 exon 14396 14919 14396 ID=Msa1335940-mRNA-1:exon:456;Parent=Msa1335940-mRNA-1
tig0000730 five_prime_UTR 13151 13252 13151 ID=Msa1335940-mRNA-1:five_prime_utr;Parent=Msa1335940-mRNA-1
tig0000730 CDS 13253 13447 13253 ID=Msa1335940-mRNA-1:cds;Parent=Msa1335940-mRNA-1
tig0000730 CDS 14396 14602 14396 ID=Msa1335940-mRNA-1:cds;Parent=Msa1335940-mRNA-1
tig0000730 three_prime_UTR 14603 14919 14603 ID=Msa1335940-mRNA-1:three_prime_utr;Parent=Msa1335940-mRNA-1
Gene Sequence

>Msa1335940

ATGAATCCGGCGGGTTTAACAGGGCGAAGGAGCATGTCGACGGTATCCAAAGCCGTCGCCGAAATCATGGGTGTCGGCAAAACCAAGACACGCAAAGCTACCAGTGAACTCTGCACTTTCATGGGCATTCCTCATCAATCTCGTTCCGAAATTGCTTCCATCATTTCCAAGTTCATCAAACTCTACAGTTTCCGGAGTCCTGGTATCAAGAAAGACAAGCTTTGGGAGCAGAATTTGCAAACACTGTTGCGTGGCAGAAACAGCGTTGGTTTTCCTGAGATTGCTAAGATTCTGTCTCCGGAATTCAGCCAGGGTGCGATTAATATCAAGGATACTAATACGGATTCTTCCGCGGATAACACAAAGGGGAAAGGCCAACAGAAGAAAGGGAAAAAGAAATAG

Protein sequence

>Msa1335940

MNPAGLTGRRSMSTVSKAVAEIMGVGKTKTRKATSELCTFMGIPHQSRSEIASIISKFIKLYSFRSPGIKKDKLWEQNLQTLLRGRNSVGFPEIAKILSPEFSQGAINIKDTNTDSSADNTKGKGQQKKGKKK*