AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750920 MtrunA17_Chr5g0446981 99.398 166 1 0 1 166 1 166 3.30e-121 338
Msa0750920 MtrunA17_Chr5g0395191 99.398 166 1 0 1 166 1 166 3.30e-121 338
Msa0750920 MtrunA17_Chr4g0015931 42.975 121 67 1 47 165 1 121 1.92e-31 109
Msa0750920 MtrunA17_CPg0492591 42.975 121 67 1 47 165 1 121 1.92e-31 109
Msa0750920 MtrunA17_Chr2g0322131 44.444 108 58 1 47 152 1 108 4.33e-28 101
Msa0750920 MtrunA17_Chr6g0465821 40.566 106 61 1 48 151 2 107 2.69e-23 89.4
Msa0750920 MtrunA17_Chr4g0017131 41.414 99 56 1 47 143 1 99 5.57e-22 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750920 AT5G46160.2 71.839 174 39 3 1 166 1 172 9.83e-80 234
Msa0750920 AT5G46160.1 71.429 175 39 3 1 166 1 173 1.74e-79 233
Msa0750920 AT1G17560.1 57.653 196 51 6 1 165 1 195 5.66e-64 195
Msa0750920 AT1G17560.2 59.627 161 34 4 34 165 14 172 3.37e-54 169
Msa0750920 ATCG00780.1 44.628 121 65 1 47 165 1 121 6.94e-33 114

Find 66 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTCATTCTTCAGTTTA+AGG 0.107312 5_2:+4481362 Msa0750920:five_prime_UTR
ATCCCTAATAAGATGAAAAT+TGG 0.210803 5_2:+4481236 Msa0750920:five_prime_UTR
CTGAAGGTTGTGGACAATTC+TGG 0.240087 5_2:+4484417 Msa0750920:CDS
TTCATATAATTTGAATCTTT+CGG 0.312238 5_2:+4484813 Msa0750920:three_prime_UTR
CTAGCCTGTTTCAAATTACT+TGG 0.320294 5_2:+4485115 Msa0750920:three_prime_UTR
GGACAATTCTGGAGCTAAAA+AGG 0.321429 5_2:+4484428 Msa0750920:CDS
GACAAACAAGGGCAGCCTAT+TGG 0.362318 5_2:+4484651 Msa0750920:CDS
ACAAACAAGGGCAGCCTATT+GGG 0.366691 5_2:+4484652 Msa0750920:CDS
GTCAAGATCCTTACCTTAGC+TGG 0.374088 5_2:+4484723 Msa0750920:CDS
CAGCATACCACGAGAACATC+TGG 0.375805 5_2:-4482157 None:intergenic
GTGAAGGAAGCACATCCTAA+TGG 0.397241 5_2:+4484516 Msa0750920:CDS
ATCTTTCGGTATGAATTGTA+AGG 0.408729 5_2:+4484827 Msa0750920:three_prime_UTR
AGCTGGGCATATTGCATAGA+TGG 0.414136 5_2:+4484740 Msa0750920:exon
TGCCTCAACTCATGAGGAAC+TGG 0.420523 5_2:-4484690 None:intergenic
TTATTCCACAATGTGATACT+TGG 0.429446 5_2:+4485029 Msa0750920:three_prime_UTR
CAATCCAAGTAATTTGAAAC+AGG 0.436109 5_2:-4485119 None:intergenic
AGATTCCACAATAAAATTTG+AGG 0.442249 5_2:-4484773 None:intergenic
CCGAAAACTCTGGTCCCAAT+AGG 0.444490 5_2:-4484666 None:intergenic
CGCGCGTTGGCAGGGAAGAA+AGG 0.457182 5_2:+4484462 Msa0750920:CDS
GGGAAGAAAGGAGCAAGATT+AGG 0.462937 5_2:+4484474 Msa0750920:CDS
ATGTGCATACGCGCGTTGGC+AGG 0.463329 5_2:+4484453 Msa0750920:CDS
CTAGTGGGCCGTTCTCTGTT+CGG 0.468029 5_2:+4484045 Msa0750920:intron
AAAGATTCAAATTATATGAA+TGG 0.479656 5_2:-4484810 None:intergenic
ATTTGAAACAGGCTAGTTTG+TGG 0.483774 5_2:-4485108 None:intergenic
TCCTAATGGAAAAGTGAAGA+AGG 0.493277 5_2:+4484530 Msa0750920:CDS
CTGCCATCACACCTACCCTT+TGG 0.494271 5_2:-4484591 None:intergenic
TTGCAGCCATCTTGAAAAGT+TGG 0.509500 5_2:-4482125 None:intergenic
TGAGAAGACGAGACGGGAGT+CGG 0.513042 5_2:-4481347 None:intergenic
GAGTCGGAGAGAAAAGAAGA+AGG 0.517428 5_2:-4481331 None:intergenic
AACAGTCCTCATCTGTATGA+AGG 0.520727 5_2:-4484394 None:intergenic
ATGCCAAAGGGTAGGTGTGA+TGG 0.533908 5_2:+4484588 Msa0750920:CDS
ATCCTGATGAAACACAGAAA+AGG 0.538422 5_2:+4484869 Msa0750920:three_prime_UTR
CAATATGCCCAGCTAAGGTA+AGG 0.539065 5_2:-4484731 None:intergenic
CATTGCTGCACGAACAACTA+CGG 0.550383 5_2:-4484568 None:intergenic
AGGAACTGGTCCGAAAACTC+TGG 0.550755 5_2:-4484676 None:intergenic
GGATTAAGCAACAGTTCCCC+TGG 0.554137 5_2:+4484069 Msa0750920:CDS
TCAAGATCCTTACCTTAGCT+GGG 0.562147 5_2:+4484724 Msa0750920:CDS
CTATGCAATATGCCCAGCTA+AGG 0.565511 5_2:-4484736 None:intergenic
TGTTCGTGCAGCAATGCCAA+AGG 0.568662 5_2:+4484575 Msa0750920:CDS
TGTAGAAAGTAGAAATGTGA+AGG 0.575451 5_2:+4485054 Msa0750920:three_prime_UTR
GTGGGCCGTTCTCTGTTCGG+TGG 0.576791 5_2:+4484048 Msa0750920:intron
GACCAGTTCCTCATGAGTTG+AGG 0.580661 5_2:+4484688 Msa0750920:CDS
ACAGATGAGGACTGTTCTGA+AGG 0.580846 5_2:+4484401 Msa0750920:CDS
GAGGACTGTTCTGAAGGTTG+TGG 0.589490 5_2:+4484407 Msa0750920:CDS
GGTGATGTGCATACGCGCGT+TGG 0.592616 5_2:+4484449 Msa0750920:CDS
GAAGAATGAGAAGACGAGAC+GGG 0.594049 5_2:-4481353 None:intergenic
GTTCGTGCAGCAATGCCAAA+GGG 0.599925 5_2:+4484576 Msa0750920:CDS
TGTGACGTGGTAAATAGACC+AGG 0.603644 5_2:-4484087 None:intergenic
TTAATCCACCGAACAGAGAA+CGG 0.620154 5_2:-4484053 None:intergenic
ACGAGAACATCTGGAAGCAA+TGG 0.620942 5_2:-4482148 None:intergenic
TGAAGAATGAGAAGACGAGA+CGG 0.625581 5_2:-4481354 None:intergenic
CCTAATGGAAAAGTGAAGAA+GGG 0.626002 5_2:+4484531 Msa0750920:CDS
TTCTTCTGCCTCAACTCATG+AGG 0.632900 5_2:-4484696 None:intergenic
ATAAAACAAGTATCACATTG+TGG 0.640427 5_2:-4485084 None:intergenic
GTGCAGCAATGCCAAAGGGT+AGG 0.641762 5_2:+4484580 Msa0750920:CDS
AGTCGGAGAGAAAAGAAGAA+GGG 0.643205 5_2:-4481330 None:intergenic
ACAATCCAAGTATCACATTG+TGG 0.654956 5_2:-4485034 None:intergenic
GTTGTGCTTGTTGACAAACA+AGG 0.656177 5_2:+4484639 Msa0750920:CDS
TATGATACAAGCATCAGTGA+AGG 0.662607 5_2:+4484500 Msa0750920:CDS
AACGAACCTTCATACAGATG+AGG 0.663831 5_2:+4484388 Msa0750920:CDS
ATTGCTTCCAGATGTTCTCG+TGG 0.666829 5_2:+4482150 Msa0750920:CDS
TTGTGCTTGTTGACAAACAA+GGG 0.669343 5_2:+4484640 Msa0750920:CDS
GTGACGTGGTAAATAGACCA+GGG 0.672796 5_2:-4484086 None:intergenic
GGGTAGGTGTGATGGCAGTG+AGG 0.701393 5_2:+4484596 Msa0750920:CDS
TGACGTGGTAAATAGACCAG+GGG 0.731348 5_2:-4484085 None:intergenic
GCATGTCATCTCATGTGACG+TGG 0.739886 5_2:-4484100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTATTGATAAATAATTT+GGG - chr5_2:4482217-4482236 None:intergenic 10.0%
!!! TTTTGTATTGATAAATAATT+TGG - chr5_2:4482218-4482237 None:intergenic 10.0%
!! TAATAAAAATATCTATTAAG+TGG - chr5_2:4483987-4484006 None:intergenic 10.0%
!!! AATAATTTGGGTTTTAAAAA+TGG - chr5_2:4482205-4482224 None:intergenic 15.0%
!! AAAGCAACATTAAAAAAAAA+AGG - chr5_2:4482585-4482604 None:intergenic 15.0%
!!! TTTTTTTTTTAATGTTGCTT+TGG + chr5_2:4482584-4482603 Msa0750920:intron 15.0%
!!! TTTTCTAAATTTTTTGCTAT+AGG - chr5_2:4482634-4482653 None:intergenic 15.0%
!! ACAAAATTTAAAAGAATACT+CGG - chr5_2:4482853-4482872 None:intergenic 15.0%
!! AGTTTATAAAAGTGAAATAT+AGG - chr5_2:4483151-4483170 None:intergenic 15.0%
!! TATATCTAATTATCTATTTC+CGG - chr5_2:4483569-4483588 None:intergenic 15.0%
!! AAAGATTCAAATTATATGAA+TGG - chr5_2:4484813-4484832 None:intergenic 15.0%
!! TTCATATAATTTGAATCTTT+CGG + chr5_2:4484813-4484832 Msa0750920:three_prime_UTR 15.0%
!!! AACCAATTTTCATCTTATTA+GGG - chr5_2:4481241-4481260 None:intergenic 20.0%
!!! AAACCAATTTTCATCTTATT+AGG - chr5_2:4481242-4481261 None:intergenic 20.0%
!! TGTGAAGTATATGAAAATTA+GGG - chr5_2:4481496-4481515 None:intergenic 20.0%
!! TTGTGAAGTATATGAAAATT+AGG - chr5_2:4481497-4481516 None:intergenic 20.0%
!!! ATATCATTTTTTTGCTTCAT+AGG + chr5_2:4481678-4481697 Msa0750920:intron 20.0%
!!! AATTTTGCAAACAGATTTTT+AGG + chr5_2:4482006-4482025 Msa0750920:intron 20.0%
!!! CATTAATTTTTGTAGTTCAA+TGG + chr5_2:4482274-4482293 Msa0750920:intron 20.0%
!! AAACACAATTGTAACAAAAT+GGG - chr5_2:4482310-4482329 None:intergenic 20.0%
!! AAAACACAATTGTAACAAAA+TGG - chr5_2:4482311-4482330 None:intergenic 20.0%
!!! GTTACAATTGTGTTTTTTAT+AGG + chr5_2:4482315-4482334 Msa0750920:intron 20.0%
!!! ACATTAAAAAAAAAAGGTAC+TGG - chr5_2:4482579-4482598 None:intergenic 20.0%
!! AGCTAATGATAGTAAAATAA+AGG - chr5_2:4482944-4482963 None:intergenic 20.0%
!!! ATGAAAAGGCATTTTTTTAA+TGG - chr5_2:4483613-4483632 None:intergenic 20.0%
!!! TTAAAAAAATGCCTTTTCAT+CGG + chr5_2:4483613-4483632 Msa0750920:intron 20.0%
!!! GTTTTAGTAAACTAACAATT+TGG - chr5_2:4483726-4483745 None:intergenic 20.0%
!! TAATATATGAAATTTCAGAG+TGG - chr5_2:4483850-4483869 None:intergenic 20.0%
!!! CAAGAATTTTTATGTTGATA+AGG + chr5_2:4483950-4483969 Msa0750920:intron 20.0%
!! AGCATAAGAAAATAATGTTA+AGG - chr5_2:4484192-4484211 None:intergenic 20.0%
! ATCCCTAATAAGATGAAAAT+TGG + chr5_2:4481236-4481255 Msa0750920:five_prime_UTR 25.0%
!! GAGTTAGCAGATTAATTTTT+CGG - chr5_2:4481302-4481321 None:intergenic 25.0%
! TATACTTCACAAATCTTCAA+AGG + chr5_2:4481505-4481524 Msa0750920:intron 25.0%
! ATTGAGATGTTGAATAGAAT+AGG + chr5_2:4481716-4481735 Msa0750920:intron 25.0%
! GTTGTTAATATCTATAACAG+TGG - chr5_2:4481982-4482001 None:intergenic 25.0%
! ACATGAGATTTAAACAGAAA+TGG - chr5_2:4482067-4482086 None:intergenic 25.0%
! ATATTCCCTGAAAAAATGAA+GGG - chr5_2:4482097-4482116 None:intergenic 25.0%
! TATATTCCCTGAAAAAATGA+AGG - chr5_2:4482098-4482117 None:intergenic 25.0%
!! TTCTTTTGCATGTTGAAAAT+TGG + chr5_2:4482490-4482509 Msa0750920:intron 25.0%
!!! AATTTTGTTTTCACTGAAGT+TGG + chr5_2:4482865-4482884 Msa0750920:intron 25.0%
!!! ATTTTGTTTTCACTGAAGTT+GGG + chr5_2:4482866-4482885 Msa0750920:intron 25.0%
!! ATGAAAAAGCAACATTTTGT+GGG - chr5_2:4483232-4483251 None:intergenic 25.0%
!! TATGAAAAAGCAACATTTTG+TGG - chr5_2:4483233-4483252 None:intergenic 25.0%
!! ATACAATATTTCTGTGTTCT+TGG + chr5_2:4483354-4483373 Msa0750920:intron 25.0%
!! TACAATATTTCTGTGTTCTT+GGG + chr5_2:4483355-4483374 Msa0750920:intron 25.0%
! ATCTCCAAAATATAAGCAAA+AGG - chr5_2:4483489-4483508 None:intergenic 25.0%
!!! AAACATTGATTCTATCCTTT+TGG + chr5_2:4483691-4483710 Msa0750920:intron 25.0%
! GTAATAATGAAACTACAACA+TGG - chr5_2:4483748-4483767 None:intergenic 25.0%
! GTTGTAGTTTCATTATTACA+TGG + chr5_2:4483749-4483768 Msa0750920:intron 25.0%
! AGATTCCACAATAAAATTTG+AGG - chr5_2:4484776-4484795 None:intergenic 25.0%
!! CTTGCTTCTAAAAAAATGTT+AGG - chr5_2:4484942-4484961 None:intergenic 25.0%
!! TTCTGAATGATTTTTCGTTT+TGG + chr5_2:4484993-4485012 Msa0750920:three_prime_UTR 25.0%
! ATAAAACAAGTATCACATTG+TGG - chr5_2:4485087-4485106 None:intergenic 25.0%
TCTTCTCATTCTTCAGTTTA+AGG + chr5_2:4481362-4481381 Msa0750920:five_prime_UTR 30.0%
AATGAGACATAATTGTATGG+AGG - chr5_2:4481958-4481977 None:intergenic 30.0%
GGAAATGAGACATAATTGTA+TGG - chr5_2:4481961-4481980 None:intergenic 30.0%
TATTCCCTGAAAAAATGAAG+GGG - chr5_2:4482096-4482115 None:intergenic 30.0%
!! AAGATACCAACTTTTCAAGA+TGG + chr5_2:4482119-4482138 Msa0750920:exon 30.0%
TGACTTTCACCACATATTTA+TGG + chr5_2:4482374-4482393 Msa0750920:intron 30.0%
AGACATCAACCATAAATATG+TGG - chr5_2:4482386-4482405 None:intergenic 30.0%
GATAAATGGGTACTTCTATA+AGG - chr5_2:4482728-4482747 None:intergenic 30.0%
GCATTATACCTACGATAAAT+GGG - chr5_2:4482741-4482760 None:intergenic 30.0%
TGCATTATACCTACGATAAA+TGG - chr5_2:4482742-4482761 None:intergenic 30.0%
TATATGCTTCAAAGAGAACA+GGG - chr5_2:4483073-4483092 None:intergenic 30.0%
ATATATGCTTCAAAGAGAAC+AGG - chr5_2:4483074-4483093 None:intergenic 30.0%
!! TCTCTTTGAAGCATATATCT+TGG + chr5_2:4483076-4483095 Msa0750920:intron 30.0%
! TTGGACTTGTTCTAGATAAT+AGG - chr5_2:4483205-4483224 None:intergenic 30.0%
! TGAAAAAGCAACATTTTGTG+GGG - chr5_2:4483231-4483250 None:intergenic 30.0%
! ATACCCTTAGTAACGAATTT+TGG + chr5_2:4483266-4483285 Msa0750920:intron 30.0%
! TACCCTTAGTAACGAATTTT+GGG + chr5_2:4483267-4483286 Msa0750920:intron 30.0%
TTCCCAAAATTCGTTACTAA+GGG - chr5_2:4483272-4483291 None:intergenic 30.0%
TTTCCCAAAATTCGTTACTA+AGG - chr5_2:4483273-4483292 None:intergenic 30.0%
ACCAACAAAGGATCAATAAT+CGG + chr5_2:4483402-4483421 Msa0750920:intron 30.0%
! AGCACCTTTTGCTTATATTT+TGG + chr5_2:4483482-4483501 Msa0750920:intron 30.0%
!! TTTTAATGGTCTTGGAAAGT+TGG - chr5_2:4483599-4483618 None:intergenic 30.0%
!!! AGGCATTTTTTTAATGGTCT+TGG - chr5_2:4483607-4483626 None:intergenic 30.0%
!!! CATTTTAACTTCCGATGAAA+AGG - chr5_2:4483627-4483646 None:intergenic 30.0%
AAACAGTTATTCTCTTACCT+GGG - chr5_2:4483658-4483677 None:intergenic 30.0%
AAAACAGTTATTCTCTTACC+TGG - chr5_2:4483659-4483678 None:intergenic 30.0%
!! GTGTTTGACTTGTAAATAGA+GGG - chr5_2:4483925-4483944 None:intergenic 30.0%
TGTTGAAAAACCAAACTAGT+GGG + chr5_2:4484030-4484049 Msa0750920:intron 30.0%
!!! ATGCAACAGTTATTTTTCTC+AGG + chr5_2:4484119-4484138 Msa0750920:CDS 30.0%
! TATTTTTCTCAGGTACATGT+AGG + chr5_2:4484129-4484148 Msa0750920:intron 30.0%
AAGATTACCAATACTGTGTT+TGG - chr5_2:4484217-4484236 None:intergenic 30.0%
!!! ACTGTTGTTTTCTACAATCT+AGG - chr5_2:4484243-4484262 None:intergenic 30.0%
! GTCATCCTCAAATTTTATTG+TGG + chr5_2:4484768-4484787 Msa0750920:three_prime_UTR 30.0%
ATCTTTCGGTATGAATTGTA+AGG + chr5_2:4484827-4484846 Msa0750920:three_prime_UTR 30.0%
TTATTCCACAATGTGATACT+TGG + chr5_2:4485029-4485048 Msa0750920:three_prime_UTR 30.0%
TGTAGAAAGTAGAAATGTGA+AGG + chr5_2:4485054-4485073 Msa0750920:three_prime_UTR 30.0%
! CAATCCAAGTAATTTGAAAC+AGG - chr5_2:4485122-4485141 None:intergenic 30.0%
CAAGGCAAGTTATTGAGAAA+TGG - chr5_2:4481419-4481438 None:intergenic 35.0%
CTTCAATCATAAGTGAGTGT+CGG - chr5_2:4481602-4481621 None:intergenic 35.0%
GAATAGAATAGGTGTCAAGT+TGG + chr5_2:4481727-4481746 Msa0750920:intron 35.0%
GACATAATTGTATGGAGGAA+CGG - chr5_2:4481953-4481972 None:intergenic 35.0%
!!! TTTTGCCCCTTCATTTTTTC+AGG + chr5_2:4482088-4482107 Msa0750920:intron 35.0%
!!! TTTGCCCCTTCATTTTTTCA+GGG + chr5_2:4482089-4482108 Msa0750920:intron 35.0%
TCATATCAAGAGCTTGAAAG+AGG - chr5_2:4482357-4482376 None:intergenic 35.0%
TACACAATGGGAACTTGTAA+AGG + chr5_2:4482687-4482706 Msa0750920:intron 35.0%
!! TAGAAGTACCCATTTATCGT+AGG + chr5_2:4482730-4482749 Msa0750920:intron 35.0%
ATGCTAAACAGTCACCTAAA+AGG - chr5_2:4482781-4482800 None:intergenic 35.0%
! TTTTACGTGGGTAGTAACTA+AGG - chr5_2:4482811-4482830 None:intergenic 35.0%
ATCCTTAAGCTAAATCAGCT+GGG + chr5_2:4482913-4482932 Msa0750920:intron 35.0%
!! TACTATCATTAGCTTTGTCG+AGG + chr5_2:4482950-4482969 Msa0750920:intron 35.0%
ACATTGTAAGACAAAGAAGC+AGG - chr5_2:4483034-4483053 None:intergenic 35.0%
AGGTGTCTTGATATTGTATC+TGG - chr5_2:4483185-4483204 None:intergenic 35.0%
GTTGTGAGTATCATCATTCT+TGG - chr5_2:4483299-4483318 None:intergenic 35.0%
GAGAAAAATCACACCAACAA+AGG + chr5_2:4483390-4483409 Msa0750920:intron 35.0%
TCCGATTATTGATCCTTTGT+TGG - chr5_2:4483406-4483425 None:intergenic 35.0%
TCTACAGCACTGTCTTTATA+TGG + chr5_2:4483519-4483538 Msa0750920:intron 35.0%
AACAGTTATTCTCTTACCTG+GGG - chr5_2:4483657-4483676 None:intergenic 35.0%
!!! CATTGATTCTATCCTTTTGG+TGG + chr5_2:4483694-4483713 Msa0750920:intron 35.0%
! TTGCCAATGCTCATGTTTTA+GGG - chr5_2:4483785-4483804 None:intergenic 35.0%
! TTTGCCAATGCTCATGTTTT+AGG - chr5_2:4483786-4483805 None:intergenic 35.0%
!! TTGACTTGTAAATAGAGGGA+GGG - chr5_2:4483921-4483940 None:intergenic 35.0%
!! TTTGACTTGTAAATAGAGGG+AGG - chr5_2:4483922-4483941 None:intergenic 35.0%
!! CGTGTTTGACTTGTAAATAG+AGG - chr5_2:4483926-4483945 None:intergenic 35.0%
GTGTTGAAAAACCAAACTAG+TGG + chr5_2:4484029-4484048 Msa0750920:intron 35.0%
TACATGTAGGAATCAGTTGA+AGG + chr5_2:4484142-4484161 Msa0750920:intron 35.0%
TGTGTGTAAGAAACTAAGCA+TGG - chr5_2:4484318-4484337 None:intergenic 35.0%
! AGACATTGTTTTCTTCAGGA+AGG - chr5_2:4484352-4484371 None:intergenic 35.0%
! AGGAAGACATTGTTTTCTTC+AGG - chr5_2:4484356-4484375 None:intergenic 35.0%
TATGATACAAGCATCAGTGA+AGG + chr5_2:4484500-4484519 Msa0750920:CDS 35.0%
TCCTAATGGAAAAGTGAAGA+AGG + chr5_2:4484530-4484549 Msa0750920:CDS 35.0%
CCTAATGGAAAAGTGAAGAA+GGG + chr5_2:4484531-4484550 Msa0750920:CDS 35.0%
! TTGTGCTTGTTGACAAACAA+GGG + chr5_2:4484640-4484659 Msa0750920:CDS 35.0%
ATCCTGATGAAACACAGAAA+AGG + chr5_2:4484869-4484888 Msa0750920:three_prime_UTR 35.0%
! AACCTTTTCTGTGTTTCATC+AGG - chr5_2:4484874-4484893 None:intergenic 35.0%
ACAATCCAAGTATCACATTG+TGG - chr5_2:4485037-4485056 None:intergenic 35.0%
!! ATTTGAAACAGGCTAGTTTG+TGG - chr5_2:4485111-4485130 None:intergenic 35.0%
CTAGCCTGTTTCAAATTACT+TGG + chr5_2:4485115-4485134 Msa0750920:three_prime_UTR 35.0%
AGTCGGAGAGAAAAGAAGAA+GGG - chr5_2:4481333-4481352 None:intergenic 40.0%
TGAAGAATGAGAAGACGAGA+CGG - chr5_2:4481357-4481376 None:intergenic 40.0%
!! AGAATAGGTGTCAAGTTGGA+AGG + chr5_2:4481731-4481750 Msa0750920:intron 40.0%
TTGCAGCCATCTTGAAAAGT+TGG - chr5_2:4482128-4482147 None:intergenic 40.0%
! GTGAGTTTTCACTCATTGTC+TGG + chr5_2:4482450-4482469 Msa0750920:intron 40.0%
CATCACCATGTGTACACAAT+GGG + chr5_2:4482675-4482694 Msa0750920:intron 40.0%
AAGTTCCCATTGTGTACACA+TGG - chr5_2:4482683-4482702 None:intergenic 40.0%
!! GGAACTTGTAAAGGTACTGT+AGG + chr5_2:4482696-4482715 Msa0750920:intron 40.0%
! AGAAGTAGGCACTTTTACGT+GGG - chr5_2:4482823-4482842 None:intergenic 40.0%
! TGTTTTCACTGAAGTTGGGA+TGG + chr5_2:4482870-4482889 Msa0750920:intron 40.0%
! GTTTTCACTGAAGTTGGGAT+GGG + chr5_2:4482871-4482890 Msa0750920:intron 40.0%
! CAGCTGATTTAGCTTAAGGA+TGG - chr5_2:4482914-4482933 None:intergenic 40.0%
CATCCTTAAGCTAAATCAGC+TGG + chr5_2:4482912-4482931 Msa0750920:intron 40.0%
! ATCCCAGCTGATTTAGCTTA+AGG - chr5_2:4482918-4482937 None:intergenic 40.0%
AAGACAAAGAAGCAGGAATG+TGG - chr5_2:4483027-4483046 None:intergenic 40.0%
TCATGGAGCAAATCACACAA+CGG - chr5_2:4483112-4483131 None:intergenic 40.0%
TCCATGAAAGTCAAGAGTCA+AGG + chr5_2:4483125-4483144 Msa0750920:intron 40.0%
! GCAACATTTTGTGGGGTTAT+TGG - chr5_2:4483224-4483243 None:intergenic 40.0%
!! CTTTATATGGAGCTGGTTTG+TGG + chr5_2:4483532-4483551 Msa0750920:intron 40.0%
GTTAAAATGTCAACTTCCCC+AGG + chr5_2:4483638-4483657 Msa0750920:intron 40.0%
ATTTGGACATCACCACCAAA+AGG - chr5_2:4483709-4483728 None:intergenic 40.0%
AGAGTGGTTGCAAAATGTAG+TGG - chr5_2:4483834-4483853 None:intergenic 40.0%
TTAATCCACCGAACAGAGAA+CGG - chr5_2:4484056-4484075 None:intergenic 40.0%
ATGCTTGCCAAACACAGTAT+TGG + chr5_2:4484207-4484226 Msa0750920:intron 40.0%
ACATGTATCTTTGCACTGCA+TGG - chr5_2:4484273-4484292 None:intergenic 40.0%
AACGAACCTTCATACAGATG+AGG + chr5_2:4484388-4484407 Msa0750920:CDS 40.0%
AACAGTCCTCATCTGTATGA+AGG - chr5_2:4484397-4484416 None:intergenic 40.0%
!! GGACAATTCTGGAGCTAAAA+AGG + chr5_2:4484428-4484447 Msa0750920:CDS 40.0%
!! CCCTTCTTCACTTTTCCATT+AGG - chr5_2:4484534-4484553 None:intergenic 40.0%
! GTTGTGCTTGTTGACAAACA+AGG + chr5_2:4484639-4484658 Msa0750920:CDS 40.0%
TCAAGATCCTTACCTTAGCT+GGG + chr5_2:4484724-4484743 Msa0750920:CDS 40.0%
GAGTCGGAGAGAAAAGAAGA+AGG - chr5_2:4481334-4481353 None:intergenic 45.0%
GAAGAATGAGAAGACGAGAC+GGG - chr5_2:4481356-4481375 None:intergenic 45.0%
AGACGACGAGAGACAAGTTA+TGG - chr5_2:4481554-4481573 None:intergenic 45.0%
CACACGTGTCAATGTTGTGT+CGG - chr5_2:4481645-4481664 None:intergenic 45.0%
ACGAGAACATCTGGAAGCAA+TGG - chr5_2:4482151-4482170 None:intergenic 45.0%
ATTGCTTCCAGATGTTCTCG+TGG + chr5_2:4482150-4482169 Msa0750920:CDS 45.0%
GCATCACCATGTGTACACAA+TGG + chr5_2:4482674-4482693 Msa0750920:intron 45.0%
! CTCCAGTACTGTCTCCTTTT+AGG + chr5_2:4482764-4482783 Msa0750920:intron 45.0%
CACCTAAAAGGAGACAGTAC+TGG - chr5_2:4482769-4482788 None:intergenic 45.0%
! CAGAAGTAGGCACTTTTACG+TGG - chr5_2:4482824-4482843 None:intergenic 45.0%
!! CACGTAAAAGTGCCTACTTC+TGG + chr5_2:4482822-4482841 Msa0750920:intron 45.0%
AGCTTAAGGATGGCAACATC+TGG - chr5_2:4482904-4482923 None:intergenic 45.0%
GCCTTGACTCTTGACTTTCA+TGG - chr5_2:4483129-4483148 None:intergenic 45.0%
GCACTGTCTTTATATGGAGC+TGG + chr5_2:4483525-4483544 Msa0750920:intron 45.0%
GCTCCCTAAAACATGAGCAT+TGG + chr5_2:4483779-4483798 Msa0750920:intron 45.0%
TTAGTGGCACAAGTGCAAAC+TGG - chr5_2:4483893-4483912 None:intergenic 45.0%
TGACGTGGTAAATAGACCAG+GGG - chr5_2:4484088-4484107 None:intergenic 45.0%
GTGACGTGGTAAATAGACCA+GGG - chr5_2:4484089-4484108 None:intergenic 45.0%
TGTGACGTGGTAAATAGACC+AGG - chr5_2:4484090-4484109 None:intergenic 45.0%
GGTTCGTTGTTGCTGCAAAA+AGG - chr5_2:4484376-4484395 None:intergenic 45.0%
ACAGATGAGGACTGTTCTGA+AGG + chr5_2:4484401-4484420 Msa0750920:CDS 45.0%
CTGAAGGTTGTGGACAATTC+TGG + chr5_2:4484417-4484436 Msa0750920:CDS 45.0%
GGGAAGAAAGGAGCAAGATT+AGG + chr5_2:4484474-4484493 Msa0750920:CDS 45.0%
! GTGAAGGAAGCACATCCTAA+TGG + chr5_2:4484516-4484535 Msa0750920:CDS 45.0%
CATTGCTGCACGAACAACTA+CGG - chr5_2:4484571-4484590 None:intergenic 45.0%
ACAAACAAGGGCAGCCTATT+GGG + chr5_2:4484652-4484671 Msa0750920:CDS 45.0%
! CCTATTGGGACCAGAGTTTT+CGG + chr5_2:4484666-4484685 Msa0750920:CDS 45.0%
TTCTTCTGCCTCAACTCATG+AGG - chr5_2:4484699-4484718 None:intergenic 45.0%
GTCAAGATCCTTACCTTAGC+TGG + chr5_2:4484723-4484742 Msa0750920:CDS 45.0%
CAATATGCCCAGCTAAGGTA+AGG - chr5_2:4484734-4484753 None:intergenic 45.0%
CTATGCAATATGCCCAGCTA+AGG - chr5_2:4484739-4484758 None:intergenic 45.0%
AGCTGGGCATATTGCATAGA+TGG + chr5_2:4484740-4484759 Msa0750920:exon 45.0%
!! AATAATAAAAAAAATAAACA+AGG - chr5_2:4481437-4481456 None:intergenic 5.0%
!!! TTTTTTTATTATTATATCAT+AGG + chr5_2:4481444-4481463 Msa0750920:intron 5.0%
!! TTGTGTCGGTTTCGTACAGC+GGG - chr5_2:4481631-4481650 None:intergenic 50.0%
!! GTTGTGTCGGTTTCGTACAG+CGG - chr5_2:4481632-4481651 None:intergenic 50.0%
CAGCATACCACGAGAACATC+TGG - chr5_2:4482160-4482179 None:intergenic 50.0%
TACTCGGAGATGCCAGAAGT+AGG - chr5_2:4482837-4482856 None:intergenic 50.0%
! GAGAACAGGGTTAGCAGACA+TGG - chr5_2:4483060-4483079 None:intergenic 50.0%
GACAGTGCTGTAGAGAGTTG+AGG - chr5_2:4483513-4483532 None:intergenic 50.0%
!! TATGGAGCTGGTTTGTGGCT+TGG + chr5_2:4483537-4483556 Msa0750920:intron 50.0%
! GTTTGTGGCTTGGCTTCTTC+CGG + chr5_2:4483547-4483566 Msa0750920:intron 50.0%
TAGAGGGAGGGAGTGATTAG+TGG - chr5_2:4483909-4483928 None:intergenic 50.0%
GGATTAAGCAACAGTTCCCC+TGG + chr5_2:4484069-4484088 Msa0750920:CDS 50.0%
GCATGTCATCTCATGTGACG+TGG - chr5_2:4484103-4484122 None:intergenic 50.0%
!! GAGGACTGTTCTGAAGGTTG+TGG + chr5_2:4484407-4484426 Msa0750920:CDS 50.0%
TGTTCGTGCAGCAATGCCAA+AGG + chr5_2:4484575-4484594 Msa0750920:CDS 50.0%
GTTCGTGCAGCAATGCCAAA+GGG + chr5_2:4484576-4484595 Msa0750920:CDS 50.0%
ATGCCAAAGGGTAGGTGTGA+TGG + chr5_2:4484588-4484607 Msa0750920:CDS 50.0%
GACAAACAAGGGCAGCCTAT+TGG + chr5_2:4484651-4484670 Msa0750920:CDS 50.0%
CCGAAAACTCTGGTCCCAAT+AGG - chr5_2:4484669-4484688 None:intergenic 50.0%
AGGAACTGGTCCGAAAACTC+TGG - chr5_2:4484679-4484698 None:intergenic 50.0%
GACCAGTTCCTCATGAGTTG+AGG + chr5_2:4484688-4484707 Msa0750920:CDS 50.0%
TGCCTCAACTCATGAGGAAC+TGG - chr5_2:4484693-4484712 None:intergenic 50.0%
TGAGAAGACGAGACGGGAGT+CGG - chr5_2:4481350-4481369 None:intergenic 55.0%
CAGAGAACGGCCCACTAGTT+TGG - chr5_2:4484043-4484062 None:intergenic 55.0%
! CTAGTGGGCCGTTCTCTGTT+CGG + chr5_2:4484045-4484064 Msa0750920:intron 55.0%
GTGCAGCAATGCCAAAGGGT+AGG + chr5_2:4484580-4484599 Msa0750920:CDS 55.0%
CTGCCATCACACCTACCCTT+TGG - chr5_2:4484594-4484613 None:intergenic 55.0%
GGTGATGTGCATACGCGCGT+TGG + chr5_2:4484449-4484468 Msa0750920:CDS 60.0%
! ATGTGCATACGCGCGTTGGC+AGG + chr5_2:4484453-4484472 Msa0750920:CDS 60.0%
! TGTGCATACGCGCGTTGGCA+GGG + chr5_2:4484454-4484473 Msa0750920:CDS 60.0%
GGGTAGGTGTGATGGCAGTG+AGG + chr5_2:4484596-4484615 Msa0750920:CDS 60.0%
GTGGGCCGTTCTCTGTTCGG+TGG + chr5_2:4484048-4484067 Msa0750920:intron 65.0%
! CGCGCGTTGGCAGGGAAGAA+AGG + chr5_2:4484462-4484481 Msa0750920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 4481232 4485142 4481232 ID=Msa0750920;Name=Msa0750920
chr5_2 mRNA 4481232 4485142 4481232 ID=Msa0750920-mRNA-1;Parent=Msa0750920;Name=Msa0750920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=159|1|1|1|0|0.2|5|384|166
chr5_2 exon 4481232 4481273 4481232 ID=Msa0750920-mRNA-1:exon:1673;Parent=Msa0750920-mRNA-1
chr5_2 exon 4481295 4481383 4481295 ID=Msa0750920-mRNA-1:exon:1674;Parent=Msa0750920-mRNA-1
chr5_2 exon 4482110 4482171 4482110 ID=Msa0750920-mRNA-1:exon:1675;Parent=Msa0750920-mRNA-1
chr5_2 exon 4484049 4484140 4484049 ID=Msa0750920-mRNA-1:exon:1676;Parent=Msa0750920-mRNA-1
chr5_2 exon 4484384 4485142 4484384 ID=Msa0750920-mRNA-1:exon:1677;Parent=Msa0750920-mRNA-1
chr5_2 five_prime_UTR 4481232 4481273 4481232 ID=Msa0750920-mRNA-1:five_prime_utr;Parent=Msa0750920-mRNA-1
chr5_2 five_prime_UTR 4481295 4481383 4481295 ID=Msa0750920-mRNA-1:five_prime_utr;Parent=Msa0750920-mRNA-1
chr5_2 five_prime_UTR 4482110 4482137 4482110 ID=Msa0750920-mRNA-1:five_prime_utr;Parent=Msa0750920-mRNA-1
chr5_2 CDS 4482138 4482171 4482138 ID=Msa0750920-mRNA-1:cds;Parent=Msa0750920-mRNA-1
chr5_2 CDS 4484049 4484140 4484049 ID=Msa0750920-mRNA-1:cds;Parent=Msa0750920-mRNA-1
chr5_2 CDS 4484384 4484758 4484384 ID=Msa0750920-mRNA-1:cds;Parent=Msa0750920-mRNA-1
chr5_2 three_prime_UTR 4484759 4485142 4484759 ID=Msa0750920-mRNA-1:three_prime_utr;Parent=Msa0750920-mRNA-1
Gene Sequence

>Msa0750920

ATGGCTGCAACCATTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGTTCGGTGGATTAAGCAACAGTTCCCCTGGTCTATTTACCACGTCACATGAGATGACATGCAACAGTTATTTTTCTCAGCAACAACGAACCTTCATACAGATGAGGACTGTTCTGAAGGTTGTGGACAATTCTGGAGCTAAAAAGGTGATGTGCATACGCGCGTTGGCAGGGAAGAAAGGAGCAAGATTAGGTGATATGATACAAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAGGGAGCTGTTGTATTTGCCGTAGTTGTTCGTGCAGCAATGCCAAAGGGTAGGTGTGATGGCAGTGAGGTCAAGTTTGACGACAATGCTGTTGTGCTTGTTGACAAACAAGGGCAGCCTATTGGGACCAGAGTTTTCGGACCAGTTCCTCATGAGTTGAGGCAGAAGAAGCATGTCAAGATCCTTACCTTAGCTGGGCATATTGCATAG

Protein sequence

>Msa0750920

MAATIASRCSRVGRSLFGGLSNSSPGLFTTSHEMTCNSYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIRALAGKKGARLGDMIQASVKEAHPNGKVKKGAVVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA*