AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0355680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355680 MtrunA17_Chr3g0092161 92.965 199 12 1 1 197 1 199 4.71e-119 338
Msa0355680 MtrunA17_Chr4g0060741 54.500 200 81 4 1 197 1 193 1.04e-63 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355680 AT5G62440.1 52.308 195 60 5 1 188 1 169 7.63e-50 162
Msa0355680 AT5G62440.1 58.571 140 42 1 79 218 60 183 5.19e-49 160

Find 101 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTGATAATTATGATTT+TGG 0.139346 3_1:-30477511 Msa0355680:three_prime_UTR
CTTCGAAACGACGTCGTCTT+TGG 0.153472 3_1:+30479453 None:intergenic
TTCTTCTGCCATTAGGGTTT+TGG 0.166211 3_1:+30479594 None:intergenic
AGCATCTGGTGTTGTGAATT+TGG 0.205833 3_1:-30479341 Msa0355680:CDS
TTTATAATTTATGAAAGTTT+TGG 0.235443 3_1:-30477477 Msa0355680:three_prime_UTR
CAAAACGTTTGGTTCTTCTT+TGG 0.240104 3_1:-30479314 Msa0355680:CDS
GATTTCAATTGCATCTCTTC+TGG 0.274351 3_1:+30477753 None:intergenic
GAGCGGTTTCTTCTGCCATT+AGG 0.287333 3_1:+30479587 None:intergenic
GGCAGAGGAAGGGGTGGAAG+AGG 0.288084 3_1:-30477672 Msa0355680:CDS
TTCGAAACGACGTCGTCTTT+GGG 0.290014 3_1:+30479454 None:intergenic
AGAAGAAAGGTTGGAGAAGT+TGG 0.318089 3_1:-30479398 Msa0355680:CDS
AGCGGTTTCTTCTGCCATTA+GGG 0.318543 3_1:+30479588 None:intergenic
GGTGGTGGAGGAAAGCATTA+TGG 0.319668 3_1:-30477705 Msa0355680:CDS
CAAAGAAGAACCAAACGTTT+TGG 0.321184 3_1:+30479315 None:intergenic
CCTACGCCAATCTTTCTATC+AGG 0.325692 3_1:+30477900 None:intergenic
GGTGGTGGTGGTCGTGGAAG+AGG 0.332339 3_1:-30477639 Msa0355680:CDS
GTGTTGGGATCGACGATTTC+GGG 0.334129 3_1:+30479565 None:intergenic
GGAAATGGTGGCAGAGGAAG+GGG 0.363172 3_1:-30477681 Msa0355680:CDS
TGTGTTGGGATCGACGATTT+CGG 0.369010 3_1:+30479564 None:intergenic
CACACAACCATTTCAGTTTG+TGG 0.369032 3_1:+30477411 None:intergenic
AGCGAGGGTGGTCGCGAACT+TGG 0.371048 3_1:+30477865 None:intergenic
ACTCCCAACTATCCCAATCT+AGG 0.371991 3_1:-30479631 Msa0355680:five_prime_UTR
GTAGGTGCTATTTCCTCATC+AGG 0.377430 3_1:-30477836 Msa0355680:CDS
GAAATTGTAAAACCCTAGAT+TGG 0.383151 3_1:+30479618 None:intergenic
GCATCTGGTGTTGTGAATTT+GGG 0.385318 3_1:-30479340 Msa0355680:CDS
TTATATGATCCACACACTTT+CGG 0.387200 3_1:+30477784 None:intergenic
AAATTGATTACAATAGTTAC+TGG 0.392191 3_1:-30477604 Msa0355680:exon
TTCACAAATTTCTTCATGCT+TGG 0.392802 3_1:-30479276 Msa0355680:CDS
AACAAGAAGTTTGGTGGTGG+TGG 0.393287 3_1:-30477723 Msa0355680:CDS
AGAGTTATTATTAAATGATT+CGG 0.405519 3_1:-30477382 Msa0355680:three_prime_UTR
TGGCGCGGTGGTGGTGGTCG+TGG 0.406520 3_1:-30477645 Msa0355680:CDS
AAGAAGTTTGGTGGTGGTGG+TGG 0.407943 3_1:-30477720 Msa0355680:CDS
CAATTTCCCCAAAACCCTAA+TGG 0.411199 3_1:-30479602 Msa0355680:exon
AGAGGAGGTTGGCGCGGTGG+TGG 0.415258 3_1:-30477654 Msa0355680:CDS
GGAGGTTGGCGCGGTGGTGG+TGG 0.415283 3_1:-30477651 Msa0355680:CDS
ATCAGTGGAAGAAGAAAGGT+TGG 0.420672 3_1:-30479407 Msa0355680:CDS
GTGGTGGTGGTCGTGGAAGA+GGG 0.421362 3_1:-30477638 Msa0355680:CDS
AACCCTAGATTGGGATAGTT+GGG 0.421427 3_1:+30479628 None:intergenic
TGGTGGTGGTCGTGGAAGAG+GGG 0.421459 3_1:-30477637 Msa0355680:CDS
GGGATAGTTGGGAGTGTTCG+TGG 0.425480 3_1:+30479639 None:intergenic
AGTCCAAAGAAAAGCGTGCC+AGG 0.428299 3_1:-30479498 Msa0355680:CDS
GAGGAAATGGTGGCAGAGGA+AGG 0.430070 3_1:-30477683 Msa0355680:CDS
AAACCCTAGATTGGGATAGT+TGG 0.432481 3_1:+30479627 None:intergenic
GGTGGTGGTCGTGGAAGAGG+GGG 0.437353 3_1:-30477636 Msa0355680:CDS
GGAAGAGGAGGTTGGCGCGG+TGG 0.438451 3_1:-30477657 Msa0355680:CDS
GGAAAGCATTATGGAGGAAA+TGG 0.440043 3_1:-30477696 Msa0355680:CDS
GGTGGCGGCGACGGTTGTGT+TGG 0.446202 3_1:+30479549 None:intergenic
AATTTGGGACCCAAAACGTT+TGG 0.448596 3_1:-30479325 Msa0355680:CDS
AAACGTACCACAAACTGAAA+TGG 0.448793 3_1:-30477418 Msa0355680:three_prime_UTR
AACTTCCATGTCTACGGTGG+CGG 0.451314 3_1:+30479534 None:intergenic
TCTGAGGGGAACAAGAAGTT+TGG 0.454847 3_1:-30477732 Msa0355680:CDS
TGGGTTAGACTCCGTGGAGC+GGG 0.462490 3_1:+30479659 None:intergenic
AGAGGAAGGGGTGGAAGAGG+AGG 0.464178 3_1:-30477669 Msa0355680:CDS
CATGTCTACGGTGGCGGCGA+CGG 0.465197 3_1:+30479540 None:intergenic
GCAGAACCTGATAGAAAGAT+TGG 0.466237 3_1:-30477906 Msa0355680:CDS
AAAGAAGAAAAGGAAGCATC+TGG 0.469819 3_1:-30479355 Msa0355680:CDS
GTATGAGCACACGATGTTGC+TGG 0.478639 3_1:-30477949 Msa0355680:CDS
GTGGCGGCGACGGTTGTGTT+GGG 0.479598 3_1:+30479550 None:intergenic
CAATTGCATCTCTTCTGGCA+AGG 0.483061 3_1:+30477758 None:intergenic
AGACGACGTCGTTTCGAAGA+AGG 0.483912 3_1:-30479449 Msa0355680:CDS
GGGATCGACGATTTCGGGAG+CGG 0.491201 3_1:+30479570 None:intergenic
GGTGGAAGAGGAGGTTGGCG+CGG 0.493351 3_1:-30477660 Msa0355680:CDS
ATAATTATCAAGTAATTAGC+AGG 0.499293 3_1:+30477519 None:intergenic
TTGCTGGAATTGCTCAAGAA+TGG 0.501210 3_1:-30477933 Msa0355680:CDS
AGGAAATGGTGGCAGAGGAA+GGG 0.501251 3_1:-30477682 Msa0355680:CDS
AAATTGTAAAACCCTAGATT+GGG 0.501343 3_1:+30479619 None:intergenic
AATTGCATCTCTTCTGGCAA+GGG 0.502964 3_1:+30477759 None:intergenic
AAATGTTCTGTACACTTGGC+TGG 0.503926 3_1:-30477556 Msa0355680:three_prime_UTR
GAAGGGGTGGAAGAGGAGGT+TGG 0.517256 3_1:-30477665 Msa0355680:CDS
AATGGTGGCAGAGGAAGGGG+TGG 0.521908 3_1:-30477678 Msa0355680:CDS
GGATAGTTGGGAGTGTTCGT+GGG 0.526833 3_1:+30479640 None:intergenic
GAGATGCAATTGAAATCTGA+GGG 0.531760 3_1:-30477747 Msa0355680:CDS
TGCTGGAATTGCTCAAGAAT+GGG 0.536228 3_1:-30477932 Msa0355680:CDS
CGTCGCCGCCACCGTAGACA+TGG 0.538541 3_1:-30479539 Msa0355680:CDS
TATGGAGGAAATGGTGGCAG+AGG 0.549364 3_1:-30477687 Msa0355680:CDS
AGAGATGCAATTGAAATCTG+AGG 0.552943 3_1:-30477748 Msa0355680:CDS
CTCCCAACTATCCCAATCTA+GGG 0.553717 3_1:-30479630 Msa0355680:five_prime_UTR
CCTGATAGAAAGATTGGCGT+AGG 0.562455 3_1:-30477900 Msa0355680:CDS
TTGTTCACGTTGAGATTCTG+AGG 0.570134 3_1:+30479253 None:intergenic
CACGAACAAAACCCGCTCCA+CGG 0.576718 3_1:-30479670 None:intergenic
GAGGGGAACAAGAAGTTTGG+TGG 0.580350 3_1:-30477729 Msa0355680:CDS
TTTCAGCTTCCGAAAGTGTG+TGG 0.599505 3_1:-30477793 Msa0355680:CDS
CGGTGTCATCTTCCCTGATG+AGG 0.600545 3_1:+30477823 None:intergenic
TCAGAATCTCAACGTGAACA+AGG 0.603175 3_1:-30479251 Msa0355680:intron
GGTGGAGGAAAGCATTATGG+AGG 0.604832 3_1:-30477702 Msa0355680:CDS
GAGAAGTTGGAGAAAAGCGA+AGG 0.606636 3_1:-30479385 Msa0355680:CDS
GGGAACAAGAAGTTTGGTGG+TGG 0.606840 3_1:-30477726 Msa0355680:CDS
GTCCAAAGAAAAGCGTGCCA+GGG 0.611993 3_1:-30479497 Msa0355680:CDS
AGCACCTACTGTTATAGCGA+GGG 0.618289 3_1:+30477850 None:intergenic
GTGGGTTAGACTCCGTGGAG+CGG 0.619623 3_1:+30479658 None:intergenic
CTGATAGAAAGATTGGCGTA+GGG 0.621780 3_1:-30477899 Msa0355680:CDS
TTCAACTTCCATGTCTACGG+TGG 0.626511 3_1:+30479531 None:intergenic
TGTTCGTGGGTTAGACTCCG+TGG 0.630476 3_1:+30479653 None:intergenic
ACCTACTGTTATAGCGAGGG+TGG 0.640894 3_1:+30477853 None:intergenic
AAGCATTATGGAGGAAATGG+TGG 0.643534 3_1:-30477693 Msa0355680:CDS
TAGCACCTACTGTTATAGCG+AGG 0.657357 3_1:+30477849 None:intergenic
TAGGTGCTATTTCCTCATCA+GGG 0.664836 3_1:-30477835 Msa0355680:CDS
GAAGAAGGCTAAAGTAGACG+AGG 0.695132 3_1:-30479434 Msa0355680:CDS
TCGGAAGCTGAAATCATCAG+CGG 0.705331 3_1:+30477803 None:intergenic
ACCACCCTCGCTATAACAGT+AGG 0.706414 3_1:-30477854 Msa0355680:CDS
AGATGCAATTGAAATCTGAG+GGG 0.721407 3_1:-30477746 Msa0355680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTAATCTTTTTTA+AGG - chr3_1:30478522-30478541 Msa0355680:intron 10.0%
!!! GTTTTTTTAATCTTTTTTAA+GGG - chr3_1:30478523-30478542 Msa0355680:intron 10.0%
!!! TTTATAATTTATGAAAGTTT+TGG - chr3_1:30479540-30479559 Msa0355680:CDS 10.0%
!!! TTATAATTTATGAAAGTTTT+GGG - chr3_1:30479541-30479560 Msa0355680:CDS 10.0%
!!! AGTTTTTTTAATCTTTTTTA+AGG - chr3_1:30478522-30478541 Msa0355680:intron 10.0%
!!! GTTTTTTTAATCTTTTTTAA+GGG - chr3_1:30478523-30478542 Msa0355680:intron 10.0%
!!! TTTATAATTTATGAAAGTTT+TGG - chr3_1:30479540-30479559 Msa0355680:CDS 10.0%
!!! TTATAATTTATGAAAGTTTT+GGG - chr3_1:30479541-30479560 Msa0355680:CDS 10.0%
!!! CATATCAAACATAATTTTAA+TGG + chr3_1:30478029-30478048 None:intergenic 15.0%
!!! TTACTTGATAATTATGATTT+TGG - chr3_1:30479506-30479525 Msa0355680:CDS 15.0%
!! AGAGTTATTATTAAATGATT+CGG - chr3_1:30479635-30479654 Msa0355680:five_prime_UTR 15.0%
!!! CATATCAAACATAATTTTAA+TGG + chr3_1:30478029-30478048 None:intergenic 15.0%
!!! TTACTTGATAATTATGATTT+TGG - chr3_1:30479506-30479525 Msa0355680:CDS 15.0%
!! AGAGTTATTATTAAATGATT+CGG - chr3_1:30479635-30479654 Msa0355680:five_prime_UTR 15.0%
!!! GAAATATTTTGAATTCGATT+TGG - chr3_1:30477948-30477967 Msa0355680:CDS 20.0%
!!! AAAACTGTTTTCATAATTTC+TGG + chr3_1:30478213-30478232 None:intergenic 20.0%
!!! AATCAGTTTATTTGGATTTT+TGG - chr3_1:30478265-30478284 Msa0355680:intron 20.0%
!! ATCTCAGTATATTTAAACAT+TGG + chr3_1:30478772-30478791 None:intergenic 20.0%
!!! TAACATGTTCATTTATTTTG+TGG - chr3_1:30478798-30478817 Msa0355680:intron 20.0%
!! AAATTGATTACAATAGTTAC+TGG - chr3_1:30479413-30479432 Msa0355680:CDS 20.0%
!! ATAATTATCAAGTAATTAGC+AGG + chr3_1:30479501-30479520 None:intergenic 20.0%
!!! GAAATATTTTGAATTCGATT+TGG - chr3_1:30477948-30477967 Msa0355680:CDS 20.0%
!!! AAAACTGTTTTCATAATTTC+TGG + chr3_1:30478213-30478232 None:intergenic 20.0%
!!! AATCAGTTTATTTGGATTTT+TGG - chr3_1:30478265-30478284 Msa0355680:intron 20.0%
!! ATCTCAGTATATTTAAACAT+TGG + chr3_1:30478772-30478791 None:intergenic 20.0%
!!! TAACATGTTCATTTATTTTG+TGG - chr3_1:30478798-30478817 Msa0355680:intron 20.0%
!! AAATTGATTACAATAGTTAC+TGG - chr3_1:30479413-30479432 Msa0355680:CDS 20.0%
!! ATAATTATCAAGTAATTAGC+AGG + chr3_1:30479501-30479520 None:intergenic 20.0%
! AAATTGTAAAACCCTAGATT+GGG + chr3_1:30477401-30477420 None:intergenic 25.0%
!! TGTCATTTACTTGATCTATA+TGG - chr3_1:30477839-30477858 Msa0355680:CDS 25.0%
! TTTACTTGATCTATATGGTT+TGG - chr3_1:30477844-30477863 Msa0355680:CDS 25.0%
!! ATTTTCGATTAACAGAGTTT+TGG - chr3_1:30477895-30477914 Msa0355680:CDS 25.0%
!!! TTTTGAATTCGATTTGGTTA+AGG - chr3_1:30477954-30477973 Msa0355680:intron 25.0%
!! TGCAGTTGATATAAAGTTTA+GGG - chr3_1:30478056-30478075 Msa0355680:intron 25.0%
! GTGCATATAATCAGTTTATT+TGG - chr3_1:30478257-30478276 Msa0355680:intron 25.0%
!! ATAAGTTAAATCTTCTGGTT+TGG - chr3_1:30478439-30478458 Msa0355680:intron 25.0%
!!! CTTTGCTTATTTTCATTTCA+TGG - chr3_1:30478679-30478698 Msa0355680:intron 25.0%
! ATAATGAAAACAGAGAACAA+TGG + chr3_1:30478956-30478975 None:intergenic 25.0%
! AATACATAAACAAGTCAATG+TGG + chr3_1:30479045-30479064 None:intergenic 25.0%
!!! TAATTATGATTTTGGCACTA+TGG - chr3_1:30479514-30479533 Msa0355680:CDS 25.0%
!! ATTGCTTGGATTTTCATTTA+GGG - chr3_1:30479571-30479590 Msa0355680:CDS 25.0%
! AAATTGTAAAACCCTAGATT+GGG + chr3_1:30477401-30477420 None:intergenic 25.0%
!! TGTCATTTACTTGATCTATA+TGG - chr3_1:30477839-30477858 Msa0355680:CDS 25.0%
! TTTACTTGATCTATATGGTT+TGG - chr3_1:30477844-30477863 Msa0355680:CDS 25.0%
!! ATTTTCGATTAACAGAGTTT+TGG - chr3_1:30477895-30477914 Msa0355680:CDS 25.0%
!!! TTTTGAATTCGATTTGGTTA+AGG - chr3_1:30477954-30477973 Msa0355680:intron 25.0%
!! TGCAGTTGATATAAAGTTTA+GGG - chr3_1:30478056-30478075 Msa0355680:intron 25.0%
! GTGCATATAATCAGTTTATT+TGG - chr3_1:30478257-30478276 Msa0355680:intron 25.0%
!! ATAAGTTAAATCTTCTGGTT+TGG - chr3_1:30478439-30478458 Msa0355680:intron 25.0%
!!! CTTTGCTTATTTTCATTTCA+TGG - chr3_1:30478679-30478698 Msa0355680:intron 25.0%
! ATAATGAAAACAGAGAACAA+TGG + chr3_1:30478956-30478975 None:intergenic 25.0%
! AATACATAAACAAGTCAATG+TGG + chr3_1:30479045-30479064 None:intergenic 25.0%
!!! TAATTATGATTTTGGCACTA+TGG - chr3_1:30479514-30479533 Msa0355680:CDS 25.0%
!! ATTGCTTGGATTTTCATTTA+GGG - chr3_1:30479571-30479590 Msa0355680:CDS 25.0%
GAAATTGTAAAACCCTAGAT+TGG + chr3_1:30477402-30477421 None:intergenic 30.0%
AAAAATCAGTGGAAGAAGAA+AGG - chr3_1:30477606-30477625 Msa0355680:exon 30.0%
AGGTGATGAAAAAGAAGAAA+AGG - chr3_1:30477652-30477671 Msa0355680:CDS 30.0%
! AAAGAAGAACCAAACGTTTT+GGG + chr3_1:30477704-30477723 None:intergenic 30.0%
TTCACAAATTTCTTCATGCT+TGG - chr3_1:30477741-30477760 Msa0355680:CDS 30.0%
! GTGCAGTTGATATAAAGTTT+AGG - chr3_1:30478055-30478074 Msa0355680:intron 30.0%
! TGTGTTCATTTTACCTTGAT+GGG - chr3_1:30478124-30478143 Msa0355680:intron 30.0%
! TTTGAAGTAAACAACTGTGA+TGG - chr3_1:30478152-30478171 Msa0355680:intron 30.0%
GCTTGATAAGTTAAATCTTC+TGG - chr3_1:30478434-30478453 Msa0355680:intron 30.0%
TCATTGTCATGACATACATA+GGG + chr3_1:30478642-30478661 None:intergenic 30.0%
ATCATTGTCATGACATACAT+AGG + chr3_1:30478643-30478662 None:intergenic 30.0%
!! GCTTATTTTCATTTCATGGT+TGG - chr3_1:30478683-30478702 Msa0355680:intron 30.0%
CAAATCATCTATGGTTTAAG+AGG + chr3_1:30478877-30478896 None:intergenic 30.0%
CTCTTAAACCATAGATGATT+TGG - chr3_1:30478875-30478894 Msa0355680:intron 30.0%
!! TAAACCATAGATGATTTGGT+CGG - chr3_1:30478879-30478898 Msa0355680:intron 30.0%
TTATATGATCCACACACTTT+CGG + chr3_1:30479236-30479255 None:intergenic 30.0%
CTAAAAATGTTCTGTACACT+TGG - chr3_1:30479457-30479476 Msa0355680:CDS 30.0%
!!! TTTTGGGTTATATCATTGCT+TGG - chr3_1:30479557-30479576 Msa0355680:CDS 30.0%
! CATTGCTTGGATTTTCATTT+AGG - chr3_1:30479570-30479589 Msa0355680:CDS 30.0%
! TTGCTTGGATTTTCATTTAG+GGG - chr3_1:30479572-30479591 Msa0355680:CDS 30.0%
GAAATTGTAAAACCCTAGAT+TGG + chr3_1:30477402-30477421 None:intergenic 30.0%
AAAAATCAGTGGAAGAAGAA+AGG - chr3_1:30477606-30477625 Msa0355680:exon 30.0%
AGGTGATGAAAAAGAAGAAA+AGG - chr3_1:30477652-30477671 Msa0355680:CDS 30.0%
! AAAGAAGAACCAAACGTTTT+GGG + chr3_1:30477704-30477723 None:intergenic 30.0%
TTCACAAATTTCTTCATGCT+TGG - chr3_1:30477741-30477760 Msa0355680:CDS 30.0%
! GTGCAGTTGATATAAAGTTT+AGG - chr3_1:30478055-30478074 Msa0355680:intron 30.0%
! TGTGTTCATTTTACCTTGAT+GGG - chr3_1:30478124-30478143 Msa0355680:intron 30.0%
! TTTGAAGTAAACAACTGTGA+TGG - chr3_1:30478152-30478171 Msa0355680:intron 30.0%
GCTTGATAAGTTAAATCTTC+TGG - chr3_1:30478434-30478453 Msa0355680:intron 30.0%
TCATTGTCATGACATACATA+GGG + chr3_1:30478642-30478661 None:intergenic 30.0%
ATCATTGTCATGACATACAT+AGG + chr3_1:30478643-30478662 None:intergenic 30.0%
!! GCTTATTTTCATTTCATGGT+TGG - chr3_1:30478683-30478702 Msa0355680:intron 30.0%
CAAATCATCTATGGTTTAAG+AGG + chr3_1:30478877-30478896 None:intergenic 30.0%
CTCTTAAACCATAGATGATT+TGG - chr3_1:30478875-30478894 Msa0355680:intron 30.0%
!! TAAACCATAGATGATTTGGT+CGG - chr3_1:30478879-30478898 Msa0355680:intron 30.0%
TTATATGATCCACACACTTT+CGG + chr3_1:30479236-30479255 None:intergenic 30.0%
CTAAAAATGTTCTGTACACT+TGG - chr3_1:30479457-30479476 Msa0355680:CDS 30.0%
!!! TTTTGGGTTATATCATTGCT+TGG - chr3_1:30479557-30479576 Msa0355680:CDS 30.0%
! CATTGCTTGGATTTTCATTT+AGG - chr3_1:30479570-30479589 Msa0355680:CDS 30.0%
! TTGCTTGGATTTTCATTTAG+GGG - chr3_1:30479572-30479591 Msa0355680:CDS 30.0%
! GTTTTCAACTTCCATGTCTA+CGG + chr3_1:30477492-30477511 None:intergenic 35.0%
!! AAAGAAGAAAAGGAAGCATC+TGG - chr3_1:30477662-30477681 Msa0355680:CDS 35.0%
! CAAAGAAGAACCAAACGTTT+TGG + chr3_1:30477705-30477724 None:intergenic 35.0%
!! CAAAACGTTTGGTTCTTCTT+TGG - chr3_1:30477703-30477722 Msa0355680:CDS 35.0%
! GTGTGTTCATTTTACCTTGA+TGG - chr3_1:30478123-30478142 Msa0355680:intron 35.0%
! TACTCTTCACCTTTTAACCA+AGG - chr3_1:30478377-30478396 Msa0355680:intron 35.0%
ACTTACTGTCCTTGGTTAAA+AGG + chr3_1:30478389-30478408 None:intergenic 35.0%
TGTTGAGGCTAATCAAGATA+TGG - chr3_1:30478572-30478591 Msa0355680:intron 35.0%
! ACATAGTTGTCTGAAACTAC+AGG - chr3_1:30478598-30478617 Msa0355680:intron 35.0%
! CATAGTTGTCTGAAACTACA+GGG - chr3_1:30478599-30478618 Msa0355680:intron 35.0%
TGACAATGATGTTGACAACT+TGG - chr3_1:30478653-30478672 Msa0355680:intron 35.0%
GTAGCAGTTCAAACATTATG+TGG + chr3_1:30478750-30478769 None:intergenic 35.0%
ATAAATGCTGATCTTGCTTG+TGG - chr3_1:30478831-30478850 Msa0355680:intron 35.0%
TCTATGGTTTAAGAGGACTA+CGG + chr3_1:30478870-30478889 None:intergenic 35.0%
GATTTCAATTGCATCTCTTC+TGG + chr3_1:30479267-30479286 None:intergenic 35.0%
AGAGATGCAATTGAAATCTG+AGG - chr3_1:30479269-30479288 Msa0355680:CDS 35.0%
GAGATGCAATTGAAATCTGA+GGG - chr3_1:30479270-30479289 Msa0355680:CDS 35.0%
AGATGCAATTGAAATCTGAG+GGG - chr3_1:30479271-30479290 Msa0355680:CDS 35.0%
AAACGTACCACAAACTGAAA+TGG - chr3_1:30479599-30479618 Msa0355680:exon 35.0%
! GTTTTCAACTTCCATGTCTA+CGG + chr3_1:30477492-30477511 None:intergenic 35.0%
!! AAAGAAGAAAAGGAAGCATC+TGG - chr3_1:30477662-30477681 Msa0355680:CDS 35.0%
! CAAAGAAGAACCAAACGTTT+TGG + chr3_1:30477705-30477724 None:intergenic 35.0%
!! CAAAACGTTTGGTTCTTCTT+TGG - chr3_1:30477703-30477722 Msa0355680:CDS 35.0%
! GTGTGTTCATTTTACCTTGA+TGG - chr3_1:30478123-30478142 Msa0355680:intron 35.0%
! TACTCTTCACCTTTTAACCA+AGG - chr3_1:30478377-30478396 Msa0355680:intron 35.0%
ACTTACTGTCCTTGGTTAAA+AGG + chr3_1:30478389-30478408 None:intergenic 35.0%
TGTTGAGGCTAATCAAGATA+TGG - chr3_1:30478572-30478591 Msa0355680:intron 35.0%
! ACATAGTTGTCTGAAACTAC+AGG - chr3_1:30478598-30478617 Msa0355680:intron 35.0%
! CATAGTTGTCTGAAACTACA+GGG - chr3_1:30478599-30478618 Msa0355680:intron 35.0%
TGACAATGATGTTGACAACT+TGG - chr3_1:30478653-30478672 Msa0355680:intron 35.0%
GTAGCAGTTCAAACATTATG+TGG + chr3_1:30478750-30478769 None:intergenic 35.0%
ATAAATGCTGATCTTGCTTG+TGG - chr3_1:30478831-30478850 Msa0355680:intron 35.0%
TCTATGGTTTAAGAGGACTA+CGG + chr3_1:30478870-30478889 None:intergenic 35.0%
GATTTCAATTGCATCTCTTC+TGG + chr3_1:30479267-30479286 None:intergenic 35.0%
AGAGATGCAATTGAAATCTG+AGG - chr3_1:30479269-30479288 Msa0355680:CDS 35.0%
GAGATGCAATTGAAATCTGA+GGG - chr3_1:30479270-30479289 Msa0355680:CDS 35.0%
AGATGCAATTGAAATCTGAG+GGG - chr3_1:30479271-30479290 Msa0355680:CDS 35.0%
AAACGTACCACAAACTGAAA+TGG - chr3_1:30479599-30479618 Msa0355680:exon 35.0%
AACCCTAGATTGGGATAGTT+GGG + chr3_1:30477392-30477411 None:intergenic 40.0%
AAACCCTAGATTGGGATAGT+TGG + chr3_1:30477393-30477412 None:intergenic 40.0%
CAATTTCCCCAAAACCCTAA+TGG - chr3_1:30477415-30477434 Msa0355680:three_prime_UTR 40.0%
! TCTTCTGCCATTAGGGTTTT+GGG + chr3_1:30477425-30477444 None:intergenic 40.0%
! TTCTTCTGCCATTAGGGTTT+TGG + chr3_1:30477426-30477445 None:intergenic 40.0%
AGTAGACGAGGAAAAATCAG+TGG - chr3_1:30477595-30477614 Msa0355680:three_prime_UTR 40.0%
ATCAGTGGAAGAAGAAAGGT+TGG - chr3_1:30477610-30477629 Msa0355680:exon 40.0%
AGAAGAAAGGTTGGAGAAGT+TGG - chr3_1:30477619-30477638 Msa0355680:exon 40.0%
!! AGCATCTGGTGTTGTGAATT+TGG - chr3_1:30477676-30477695 Msa0355680:CDS 40.0%
!! GCATCTGGTGTTGTGAATTT+GGG - chr3_1:30477677-30477696 Msa0355680:CDS 40.0%
! AATTTGGGACCCAAAACGTT+TGG - chr3_1:30477692-30477711 Msa0355680:CDS 40.0%
TTGTTCACGTTGAGATTCTG+AGG + chr3_1:30477767-30477786 None:intergenic 40.0%
TCAGAATCTCAACGTGAACA+AGG - chr3_1:30477766-30477785 Msa0355680:CDS 40.0%
ACTTCAAAAGTCTCCCATCA+AGG + chr3_1:30478140-30478159 None:intergenic 40.0%
! ACCAAGGACAGTAAGTTGAA+AGG - chr3_1:30478393-30478412 Msa0355680:intron 40.0%
TCCTTTCAACTTACTGTCCT+TGG + chr3_1:30478397-30478416 None:intergenic 40.0%
TGTCATGACATACATAGGGT+CGG + chr3_1:30478638-30478657 None:intergenic 40.0%
GTTACCGACCAAATCATCTA+TGG + chr3_1:30478886-30478905 None:intergenic 40.0%
!! CCAACCAAGGCTTTAAGATA+GGG + chr3_1:30478912-30478931 None:intergenic 40.0%
!! TCCAACCAAGGCTTTAAGAT+AGG + chr3_1:30478913-30478932 None:intergenic 40.0%
AACTGTCTCATATCCAACCA+AGG + chr3_1:30478925-30478944 None:intergenic 40.0%
TTGCTGGAATTGCTCAAGAA+TGG - chr3_1:30479084-30479103 Msa0355680:intron 40.0%
TGCTGGAATTGCTCAAGAAT+GGG - chr3_1:30479085-30479104 Msa0355680:intron 40.0%
GCAGAACCTGATAGAAAGAT+TGG - chr3_1:30479111-30479130 Msa0355680:intron 40.0%
CTGATAGAAAGATTGGCGTA+GGG - chr3_1:30479118-30479137 Msa0355680:intron 40.0%
!! TAGGTGCTATTTCCTCATCA+GGG - chr3_1:30479182-30479201 Msa0355680:intron 40.0%
AATTGCATCTCTTCTGGCAA+GGG + chr3_1:30479261-30479280 None:intergenic 40.0%
!! GGAAAGCATTATGGAGGAAA+TGG - chr3_1:30479321-30479340 Msa0355680:CDS 40.0%
AAGCATTATGGAGGAAATGG+TGG - chr3_1:30479324-30479343 Msa0355680:CDS 40.0%
AAATGTTCTGTACACTTGGC+TGG - chr3_1:30479461-30479480 Msa0355680:CDS 40.0%
CACACAACCATTTCAGTTTG+TGG + chr3_1:30479609-30479628 None:intergenic 40.0%
AACCCTAGATTGGGATAGTT+GGG + chr3_1:30477392-30477411 None:intergenic 40.0%
AAACCCTAGATTGGGATAGT+TGG + chr3_1:30477393-30477412 None:intergenic 40.0%
CAATTTCCCCAAAACCCTAA+TGG - chr3_1:30477415-30477434 Msa0355680:three_prime_UTR 40.0%
! TCTTCTGCCATTAGGGTTTT+GGG + chr3_1:30477425-30477444 None:intergenic 40.0%
! TTCTTCTGCCATTAGGGTTT+TGG + chr3_1:30477426-30477445 None:intergenic 40.0%
AGTAGACGAGGAAAAATCAG+TGG - chr3_1:30477595-30477614 Msa0355680:three_prime_UTR 40.0%
ATCAGTGGAAGAAGAAAGGT+TGG - chr3_1:30477610-30477629 Msa0355680:exon 40.0%
AGAAGAAAGGTTGGAGAAGT+TGG - chr3_1:30477619-30477638 Msa0355680:exon 40.0%
!! AGCATCTGGTGTTGTGAATT+TGG - chr3_1:30477676-30477695 Msa0355680:CDS 40.0%
!! GCATCTGGTGTTGTGAATTT+GGG - chr3_1:30477677-30477696 Msa0355680:CDS 40.0%
! AATTTGGGACCCAAAACGTT+TGG - chr3_1:30477692-30477711 Msa0355680:CDS 40.0%
TTGTTCACGTTGAGATTCTG+AGG + chr3_1:30477767-30477786 None:intergenic 40.0%
TCAGAATCTCAACGTGAACA+AGG - chr3_1:30477766-30477785 Msa0355680:CDS 40.0%
ACTTCAAAAGTCTCCCATCA+AGG + chr3_1:30478140-30478159 None:intergenic 40.0%
! ACCAAGGACAGTAAGTTGAA+AGG - chr3_1:30478393-30478412 Msa0355680:intron 40.0%
TCCTTTCAACTTACTGTCCT+TGG + chr3_1:30478397-30478416 None:intergenic 40.0%
TGTCATGACATACATAGGGT+CGG + chr3_1:30478638-30478657 None:intergenic 40.0%
GTTACCGACCAAATCATCTA+TGG + chr3_1:30478886-30478905 None:intergenic 40.0%
!! CCAACCAAGGCTTTAAGATA+GGG + chr3_1:30478912-30478931 None:intergenic 40.0%
!! TCCAACCAAGGCTTTAAGAT+AGG + chr3_1:30478913-30478932 None:intergenic 40.0%
AACTGTCTCATATCCAACCA+AGG + chr3_1:30478925-30478944 None:intergenic 40.0%
TTGCTGGAATTGCTCAAGAA+TGG - chr3_1:30479084-30479103 Msa0355680:intron 40.0%
TGCTGGAATTGCTCAAGAAT+GGG - chr3_1:30479085-30479104 Msa0355680:intron 40.0%
GCAGAACCTGATAGAAAGAT+TGG - chr3_1:30479111-30479130 Msa0355680:intron 40.0%
CTGATAGAAAGATTGGCGTA+GGG - chr3_1:30479118-30479137 Msa0355680:intron 40.0%
!! TAGGTGCTATTTCCTCATCA+GGG - chr3_1:30479182-30479201 Msa0355680:intron 40.0%
AATTGCATCTCTTCTGGCAA+GGG + chr3_1:30479261-30479280 None:intergenic 40.0%
!! GGAAAGCATTATGGAGGAAA+TGG - chr3_1:30479321-30479340 Msa0355680:CDS 40.0%
AAGCATTATGGAGGAAATGG+TGG - chr3_1:30479324-30479343 Msa0355680:CDS 40.0%
AAATGTTCTGTACACTTGGC+TGG - chr3_1:30479461-30479480 Msa0355680:CDS 40.0%
CACACAACCATTTCAGTTTG+TGG + chr3_1:30479609-30479628 None:intergenic 40.0%
ACTCCCAACTATCCCAATCT+AGG - chr3_1:30477386-30477405 Msa0355680:three_prime_UTR 45.0%
CTCCCAACTATCCCAATCTA+GGG - chr3_1:30477387-30477406 Msa0355680:three_prime_UTR 45.0%
! CTTCTGCCATTAGGGTTTTG+GGG + chr3_1:30477424-30477443 None:intergenic 45.0%
AGCGGTTTCTTCTGCCATTA+GGG + chr3_1:30477432-30477451 None:intergenic 45.0%
TGTGTTGGGATCGACGATTT+CGG + chr3_1:30477456-30477475 None:intergenic 45.0%
TTCAACTTCCATGTCTACGG+TGG + chr3_1:30477489-30477508 None:intergenic 45.0%
CAGGGAAGAAGAAGAAGAAG+CGG - chr3_1:30477538-30477557 Msa0355680:three_prime_UTR 45.0%
TTCGAAACGACGTCGTCTTT+GGG + chr3_1:30477566-30477585 None:intergenic 45.0%
GAAGAAGGCTAAAGTAGACG+AGG - chr3_1:30477583-30477602 Msa0355680:three_prime_UTR 45.0%
GAGAAGTTGGAGAAAAGCGA+AGG - chr3_1:30477632-30477651 Msa0355680:CDS 45.0%
AAGGAGACGCATAAGCTGTT+TGG - chr3_1:30478412-30478431 Msa0355680:intron 45.0%
ACTCACCAAAAGGATGAGTG+TGG + chr3_1:30478553-30478572 None:intergenic 45.0%
!! CATCCTTTTGGTGAGTGTTG+AGG - chr3_1:30478557-30478576 Msa0355680:intron 45.0%
TAGCCTCAACACTCACCAAA+AGG + chr3_1:30478563-30478582 None:intergenic 45.0%
! GTTGTCTGAAACTACAGGGT+TGG - chr3_1:30478603-30478622 Msa0355680:intron 45.0%
TGCTGATCTTGCTTGTGGTT+TGG - chr3_1:30478836-30478855 Msa0355680:intron 45.0%
!! CCAAGGCTTTAAGATAGGGT+TGG + chr3_1:30478908-30478927 None:intergenic 45.0%
CCAACCCTATCTTAAAGCCT+TGG - chr3_1:30478905-30478924 Msa0355680:intron 45.0%
CCCTATCTTAAAGCCTTGGT+TGG - chr3_1:30478909-30478928 Msa0355680:intron 45.0%
CCTACGCCAATCTTTCTATC+AGG + chr3_1:30479120-30479139 None:intergenic 45.0%
CCTGATAGAAAGATTGGCGT+AGG - chr3_1:30479117-30479136 Msa0355680:intron 45.0%
AGCACCTACTGTTATAGCGA+GGG + chr3_1:30479170-30479189 None:intergenic 45.0%
TAGCACCTACTGTTATAGCG+AGG + chr3_1:30479171-30479190 None:intergenic 45.0%
!! GTAGGTGCTATTTCCTCATC+AGG - chr3_1:30479181-30479200 Msa0355680:intron 45.0%
TCGGAAGCTGAAATCATCAG+CGG + chr3_1:30479217-30479236 None:intergenic 45.0%
! TTTCAGCTTCCGAAAGTGTG+TGG - chr3_1:30479224-30479243 Msa0355680:intron 45.0%
CAATTGCATCTCTTCTGGCA+AGG + chr3_1:30479262-30479281 None:intergenic 45.0%
TCTGAGGGGAACAAGAAGTT+TGG - chr3_1:30479285-30479304 Msa0355680:CDS 45.0%
!! AACAAGAAGTTTGGTGGTGG+TGG - chr3_1:30479294-30479313 Msa0355680:CDS 45.0%
ACTCCCAACTATCCCAATCT+AGG - chr3_1:30477386-30477405 Msa0355680:three_prime_UTR 45.0%
CTCCCAACTATCCCAATCTA+GGG - chr3_1:30477387-30477406 Msa0355680:three_prime_UTR 45.0%
! CTTCTGCCATTAGGGTTTTG+GGG + chr3_1:30477424-30477443 None:intergenic 45.0%
AGCGGTTTCTTCTGCCATTA+GGG + chr3_1:30477432-30477451 None:intergenic 45.0%
TGTGTTGGGATCGACGATTT+CGG + chr3_1:30477456-30477475 None:intergenic 45.0%
TTCAACTTCCATGTCTACGG+TGG + chr3_1:30477489-30477508 None:intergenic 45.0%
CAGGGAAGAAGAAGAAGAAG+CGG - chr3_1:30477538-30477557 Msa0355680:three_prime_UTR 45.0%
TTCGAAACGACGTCGTCTTT+GGG + chr3_1:30477566-30477585 None:intergenic 45.0%
GAAGAAGGCTAAAGTAGACG+AGG - chr3_1:30477583-30477602 Msa0355680:three_prime_UTR 45.0%
GAGAAGTTGGAGAAAAGCGA+AGG - chr3_1:30477632-30477651 Msa0355680:CDS 45.0%
AAGGAGACGCATAAGCTGTT+TGG - chr3_1:30478412-30478431 Msa0355680:intron 45.0%
ACTCACCAAAAGGATGAGTG+TGG + chr3_1:30478553-30478572 None:intergenic 45.0%
!! CATCCTTTTGGTGAGTGTTG+AGG - chr3_1:30478557-30478576 Msa0355680:intron 45.0%
TAGCCTCAACACTCACCAAA+AGG + chr3_1:30478563-30478582 None:intergenic 45.0%
! GTTGTCTGAAACTACAGGGT+TGG - chr3_1:30478603-30478622 Msa0355680:intron 45.0%
TGCTGATCTTGCTTGTGGTT+TGG - chr3_1:30478836-30478855 Msa0355680:intron 45.0%
!! CCAAGGCTTTAAGATAGGGT+TGG + chr3_1:30478908-30478927 None:intergenic 45.0%
CCAACCCTATCTTAAAGCCT+TGG - chr3_1:30478905-30478924 Msa0355680:intron 45.0%
CCCTATCTTAAAGCCTTGGT+TGG - chr3_1:30478909-30478928 Msa0355680:intron 45.0%
CCTACGCCAATCTTTCTATC+AGG + chr3_1:30479120-30479139 None:intergenic 45.0%
CCTGATAGAAAGATTGGCGT+AGG - chr3_1:30479117-30479136 Msa0355680:intron 45.0%
AGCACCTACTGTTATAGCGA+GGG + chr3_1:30479170-30479189 None:intergenic 45.0%
TAGCACCTACTGTTATAGCG+AGG + chr3_1:30479171-30479190 None:intergenic 45.0%
!! GTAGGTGCTATTTCCTCATC+AGG - chr3_1:30479181-30479200 Msa0355680:intron 45.0%
TCGGAAGCTGAAATCATCAG+CGG + chr3_1:30479217-30479236 None:intergenic 45.0%
! TTTCAGCTTCCGAAAGTGTG+TGG - chr3_1:30479224-30479243 Msa0355680:intron 45.0%
CAATTGCATCTCTTCTGGCA+AGG + chr3_1:30479262-30479281 None:intergenic 45.0%
TCTGAGGGGAACAAGAAGTT+TGG - chr3_1:30479285-30479304 Msa0355680:CDS 45.0%
!! AACAAGAAGTTTGGTGGTGG+TGG - chr3_1:30479294-30479313 Msa0355680:CDS 45.0%
!! GGATAGTTGGGAGTGTTCGT+GGG + chr3_1:30477380-30477399 None:intergenic 50.0%
GAGCGGTTTCTTCTGCCATT+AGG + chr3_1:30477433-30477452 None:intergenic 50.0%
GTGTTGGGATCGACGATTTC+GGG + chr3_1:30477455-30477474 None:intergenic 50.0%
AACTTCCATGTCTACGGTGG+CGG + chr3_1:30477486-30477505 None:intergenic 50.0%
! AGTCCAAAGAAAAGCGTGCC+AGG - chr3_1:30477519-30477538 Msa0355680:three_prime_UTR 50.0%
! GTCCAAAGAAAAGCGTGCCA+GGG - chr3_1:30477520-30477539 Msa0355680:three_prime_UTR 50.0%
! TTCCCTGGCACGCTTTTCTT+TGG + chr3_1:30477525-30477544 None:intergenic 50.0%
CGCTTCTTCTTCTTCTTCCC+TGG + chr3_1:30477540-30477559 None:intergenic 50.0%
CTTCGAAACGACGTCGTCTT+TGG + chr3_1:30477567-30477586 None:intergenic 50.0%
AGACGACGTCGTTTCGAAGA+AGG - chr3_1:30477568-30477587 Msa0355680:three_prime_UTR 50.0%
! GTCTGCCACACTCATCCTTT+TGG - chr3_1:30478545-30478564 Msa0355680:intron 50.0%
GTATGAGCACACGATGTTGC+TGG - chr3_1:30479068-30479087 Msa0355680:intron 50.0%
ACCACCCTCGCTATAACAGT+AGG - chr3_1:30479163-30479182 Msa0355680:intron 50.0%
ACCTACTGTTATAGCGAGGG+TGG + chr3_1:30479167-30479186 None:intergenic 50.0%
GAGGGGAACAAGAAGTTTGG+TGG - chr3_1:30479288-30479307 Msa0355680:CDS 50.0%
! GGGAACAAGAAGTTTGGTGG+TGG - chr3_1:30479291-30479310 Msa0355680:CDS 50.0%
!! AAGAAGTTTGGTGGTGGTGG+TGG - chr3_1:30479297-30479316 Msa0355680:CDS 50.0%
!! GGTGGTGGAGGAAAGCATTA+TGG - chr3_1:30479312-30479331 Msa0355680:CDS 50.0%
!! GGTGGAGGAAAGCATTATGG+AGG - chr3_1:30479315-30479334 Msa0355680:CDS 50.0%
TATGGAGGAAATGGTGGCAG+AGG - chr3_1:30479330-30479349 Msa0355680:CDS 50.0%
AGGAAATGGTGGCAGAGGAA+GGG - chr3_1:30479335-30479354 Msa0355680:CDS 50.0%
!! GGATAGTTGGGAGTGTTCGT+GGG + chr3_1:30477380-30477399 None:intergenic 50.0%
GAGCGGTTTCTTCTGCCATT+AGG + chr3_1:30477433-30477452 None:intergenic 50.0%
GTGTTGGGATCGACGATTTC+GGG + chr3_1:30477455-30477474 None:intergenic 50.0%
AACTTCCATGTCTACGGTGG+CGG + chr3_1:30477486-30477505 None:intergenic 50.0%
! AGTCCAAAGAAAAGCGTGCC+AGG - chr3_1:30477519-30477538 Msa0355680:three_prime_UTR 50.0%
! GTCCAAAGAAAAGCGTGCCA+GGG - chr3_1:30477520-30477539 Msa0355680:three_prime_UTR 50.0%
! TTCCCTGGCACGCTTTTCTT+TGG + chr3_1:30477525-30477544 None:intergenic 50.0%
CGCTTCTTCTTCTTCTTCCC+TGG + chr3_1:30477540-30477559 None:intergenic 50.0%
CTTCGAAACGACGTCGTCTT+TGG + chr3_1:30477567-30477586 None:intergenic 50.0%
AGACGACGTCGTTTCGAAGA+AGG - chr3_1:30477568-30477587 Msa0355680:three_prime_UTR 50.0%
! GTCTGCCACACTCATCCTTT+TGG - chr3_1:30478545-30478564 Msa0355680:intron 50.0%
GTATGAGCACACGATGTTGC+TGG - chr3_1:30479068-30479087 Msa0355680:intron 50.0%
ACCACCCTCGCTATAACAGT+AGG - chr3_1:30479163-30479182 Msa0355680:intron 50.0%
ACCTACTGTTATAGCGAGGG+TGG + chr3_1:30479167-30479186 None:intergenic 50.0%
GAGGGGAACAAGAAGTTTGG+TGG - chr3_1:30479288-30479307 Msa0355680:CDS 50.0%
! GGGAACAAGAAGTTTGGTGG+TGG - chr3_1:30479291-30479310 Msa0355680:CDS 50.0%
!! AAGAAGTTTGGTGGTGGTGG+TGG - chr3_1:30479297-30479316 Msa0355680:CDS 50.0%
!! GGTGGTGGAGGAAAGCATTA+TGG - chr3_1:30479312-30479331 Msa0355680:CDS 50.0%
!! GGTGGAGGAAAGCATTATGG+AGG - chr3_1:30479315-30479334 Msa0355680:CDS 50.0%
TATGGAGGAAATGGTGGCAG+AGG - chr3_1:30479330-30479349 Msa0355680:CDS 50.0%
AGGAAATGGTGGCAGAGGAA+GGG - chr3_1:30479335-30479354 Msa0355680:CDS 50.0%
!! TGTTCGTGGGTTAGACTCCG+TGG + chr3_1:30477367-30477386 None:intergenic 55.0%
!! GGGATAGTTGGGAGTGTTCG+TGG + chr3_1:30477381-30477400 None:intergenic 55.0%
!! CGGTGTCATCTTCCCTGATG+AGG + chr3_1:30479197-30479216 None:intergenic 55.0%
!! AAGTTTGGTGGTGGTGGTGG+AGG - chr3_1:30479300-30479319 Msa0355680:CDS 55.0%
GAGGAAATGGTGGCAGAGGA+AGG - chr3_1:30479334-30479353 Msa0355680:CDS 55.0%
GGAAATGGTGGCAGAGGAAG+GGG - chr3_1:30479336-30479355 Msa0355680:CDS 55.0%
!! TGTTCGTGGGTTAGACTCCG+TGG + chr3_1:30477367-30477386 None:intergenic 55.0%
!! GGGATAGTTGGGAGTGTTCG+TGG + chr3_1:30477381-30477400 None:intergenic 55.0%
!! CGGTGTCATCTTCCCTGATG+AGG + chr3_1:30479197-30479216 None:intergenic 55.0%
!! AAGTTTGGTGGTGGTGGTGG+AGG - chr3_1:30479300-30479319 Msa0355680:CDS 55.0%
GAGGAAATGGTGGCAGAGGA+AGG - chr3_1:30479334-30479353 Msa0355680:CDS 55.0%
GGAAATGGTGGCAGAGGAAG+GGG - chr3_1:30479336-30479355 Msa0355680:CDS 55.0%
! TGGGTTAGACTCCGTGGAGC+GGG + chr3_1:30477361-30477380 None:intergenic 60.0%
!! GTGGGTTAGACTCCGTGGAG+CGG + chr3_1:30477362-30477381 None:intergenic 60.0%
GGGATCGACGATTTCGGGAG+CGG + chr3_1:30477450-30477469 None:intergenic 60.0%
AATGGTGGCAGAGGAAGGGG+TGG - chr3_1:30479339-30479358 Msa0355680:CDS 60.0%
AGAGGAAGGGGTGGAAGAGG+AGG - chr3_1:30479348-30479367 Msa0355680:CDS 60.0%
GAAGGGGTGGAAGAGGAGGT+TGG - chr3_1:30479352-30479371 Msa0355680:CDS 60.0%
!! GTGGTGGTGGTCGTGGAAGA+GGG - chr3_1:30479379-30479398 Msa0355680:CDS 60.0%
!! TGGTGGTGGTCGTGGAAGAG+GGG - chr3_1:30479380-30479399 Msa0355680:CDS 60.0%
TGGTCGTGGAAGAGGGGGAA+GGG - chr3_1:30479386-30479405 Msa0355680:CDS 60.0%
! TGGGTTAGACTCCGTGGAGC+GGG + chr3_1:30477361-30477380 None:intergenic 60.0%
!! GTGGGTTAGACTCCGTGGAG+CGG + chr3_1:30477362-30477381 None:intergenic 60.0%
GGGATCGACGATTTCGGGAG+CGG + chr3_1:30477450-30477469 None:intergenic 60.0%
AATGGTGGCAGAGGAAGGGG+TGG - chr3_1:30479339-30479358 Msa0355680:CDS 60.0%
AGAGGAAGGGGTGGAAGAGG+AGG - chr3_1:30479348-30479367 Msa0355680:CDS 60.0%
GAAGGGGTGGAAGAGGAGGT+TGG - chr3_1:30479352-30479371 Msa0355680:CDS 60.0%
!! GTGGTGGTGGTCGTGGAAGA+GGG - chr3_1:30479379-30479398 Msa0355680:CDS 60.0%
!! TGGTGGTGGTCGTGGAAGAG+GGG - chr3_1:30479380-30479399 Msa0355680:CDS 60.0%
TGGTCGTGGAAGAGGGGGAA+GGG - chr3_1:30479386-30479405 Msa0355680:CDS 60.0%
GTGGCGGCGACGGTTGTGTT+GGG + chr3_1:30477470-30477489 None:intergenic 65.0%
! CATGTCTACGGTGGCGGCGA+CGG + chr3_1:30477480-30477499 None:intergenic 65.0%
AGCGAGGGTGGTCGCGAACT+TGG + chr3_1:30479155-30479174 None:intergenic 65.0%
GGCAGAGGAAGGGGTGGAAG+AGG - chr3_1:30479345-30479364 Msa0355680:CDS 65.0%
GGTGGAAGAGGAGGTTGGCG+CGG - chr3_1:30479357-30479376 Msa0355680:CDS 65.0%
!! GGTGGTGGTGGTCGTGGAAG+AGG - chr3_1:30479378-30479397 Msa0355680:CDS 65.0%
! GGTGGTGGTCGTGGAAGAGG+GGG - chr3_1:30479381-30479400 Msa0355680:CDS 65.0%
GTGGTCGTGGAAGAGGGGGA+AGG - chr3_1:30479385-30479404 Msa0355680:CDS 65.0%
GGTCGTGGAAGAGGGGGAAG+GGG - chr3_1:30479387-30479406 Msa0355680:CDS 65.0%
GTCGTGGAAGAGGGGGAAGG+GGG - chr3_1:30479388-30479407 Msa0355680:CDS 65.0%
GTGGCGGCGACGGTTGTGTT+GGG + chr3_1:30477470-30477489 None:intergenic 65.0%
! CATGTCTACGGTGGCGGCGA+CGG + chr3_1:30477480-30477499 None:intergenic 65.0%
AGCGAGGGTGGTCGCGAACT+TGG + chr3_1:30479155-30479174 None:intergenic 65.0%
GGCAGAGGAAGGGGTGGAAG+AGG - chr3_1:30479345-30479364 Msa0355680:CDS 65.0%
GGTGGAAGAGGAGGTTGGCG+CGG - chr3_1:30479357-30479376 Msa0355680:CDS 65.0%
!! GGTGGTGGTGGTCGTGGAAG+AGG - chr3_1:30479378-30479397 Msa0355680:CDS 65.0%
! GGTGGTGGTCGTGGAAGAGG+GGG - chr3_1:30479381-30479400 Msa0355680:CDS 65.0%
GTGGTCGTGGAAGAGGGGGA+AGG - chr3_1:30479385-30479404 Msa0355680:CDS 65.0%
GGTCGTGGAAGAGGGGGAAG+GGG - chr3_1:30479387-30479406 Msa0355680:CDS 65.0%
GTCGTGGAAGAGGGGGAAGG+GGG - chr3_1:30479388-30479407 Msa0355680:CDS 65.0%
! GGTGGCGGCGACGGTTGTGT+TGG + chr3_1:30477471-30477490 None:intergenic 70.0%
CGTCGCCGCCACCGTAGACA+TGG - chr3_1:30477478-30477497 Msa0355680:three_prime_UTR 70.0%
GGAAGAGGAGGTTGGCGCGG+TGG - chr3_1:30479360-30479379 Msa0355680:CDS 70.0%
AGAGGAGGTTGGCGCGGTGG+TGG - chr3_1:30479363-30479382 Msa0355680:CDS 70.0%
! GGTGGCGGCGACGGTTGTGT+TGG + chr3_1:30477471-30477490 None:intergenic 70.0%
CGTCGCCGCCACCGTAGACA+TGG - chr3_1:30477478-30477497 Msa0355680:three_prime_UTR 70.0%
GGAAGAGGAGGTTGGCGCGG+TGG - chr3_1:30479360-30479379 Msa0355680:CDS 70.0%
AGAGGAGGTTGGCGCGGTGG+TGG - chr3_1:30479363-30479382 Msa0355680:CDS 70.0%
! GGAGGTTGGCGCGGTGGTGG+TGG - chr3_1:30479366-30479385 Msa0355680:CDS 75.0%
!! TGGCGCGGTGGTGGTGGTCG+TGG - chr3_1:30479372-30479391 Msa0355680:CDS 75.0%
! GGAGGTTGGCGCGGTGGTGG+TGG - chr3_1:30479366-30479385 Msa0355680:CDS 75.0%
!! TGGCGCGGTGGTGGTGGTCG+TGG - chr3_1:30479372-30479391 Msa0355680:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 30477351 30479688 30477351 ID=Msa0355680;Name=Msa0355680
chr3_1 mRNA 30477351 30479688 30477351 ID=Msa0355680-mRNA-1;Parent=Msa0355680;Name=Msa0355680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=83|1|1|1|1|1|2|269|234
chr3_1 exon 30477351 30477970 30477351 ID=Msa0355680-mRNA-1:exon:6284;Parent=Msa0355680-mRNA-1
chr3_1 exon 30479252 30479688 30479252 ID=Msa0355680-mRNA-1:exon:6283;Parent=Msa0355680-mRNA-1
chr3_1 five_prime_UTR 30479606 30479688 30479606 ID=Msa0355680-mRNA-1:five_prime_utr;Parent=Msa0355680-mRNA-1
chr3_1 CDS 30479252 30479605 30479252 ID=Msa0355680-mRNA-1:cds;Parent=Msa0355680-mRNA-1
chr3_1 CDS 30477620 30477970 30477620 ID=Msa0355680-mRNA-1:cds;Parent=Msa0355680-mRNA-1
chr3_1 three_prime_UTR 30477351 30477619 30477351 ID=Msa0355680-mRNA-1:three_prime_utr;Parent=Msa0355680-mRNA-1
Gene Sequence

>Msa0355680

ATGGCAGAAGAAACCGCTCCCGAAATCGTCGATCCCAACACAACCGTCGCCGCCACCGTAGACATGGAAGTTGAAAACGTCACTGAGTCCAAAGAAAAGCGTGCCAGGGAAGAAGAAGAAGAAGCGGAACCCAAAGACGACGTCGTTTCGAAGAAGGCTAAAGTAGACGAGGAAAAATCAGTGGAAGAAGAAAGGTTGGAGAAGTTGGAGAAAAGCGAAGGTGATGAAAAAGAAGAAAAGGAAGCATCTGGTGTTGTGAATTTGGGACCCAAAACGTTTGGTTCTTCTTTGGATATGTTTCATTACTTTCACAAATTTCTTCATGCTTGGCCTCAGAATCTCAACGTGAACAAGTATGAGCACACGATGTTGCTGGAATTGCTCAAGAATGGGCATGCAGAACCTGATAGAAAGATTGGCGTAGGGATTTGTGCTTTCCAAGTTCGCGACCACCCTCGCTATAACAGTAGGTGCTATTTCCTCATCAGGGAAGATGACACCGCTGATGATTTCAGCTTCCGAAAGTGTGTGGATCATATAAGTCCCTTGCCAGAAGAGATGCAATTGAAATCTGAGGGGAACAAGAAGTTTGGTGGTGGTGGTGGAGGAAAGCATTATGGAGGAAATGGTGGCAGAGGAAGGGGTGGAAGAGGAGGTTGGCGCGGTGGTGGTGGTCGTGGAAGAGGGGGAAGGGGGAGAAATTGA
Protein sequence

>Msa0355680

MAEETAPEIVDPNTTVAATVDMEVENVTESKEKRAREEEEEAEPKDDVVSKKAKVDEEKSVEEERLEKLEKSEGDEKEEKEASGVVNLGPKTFGSSLDMFHYFHKFLHAWPQNLNVNKYEHTMLLELLKNGHAEPDRKIGVGICAFQVRDHPRYNSRCYFLIREDDTADDFSFRKCVDHISPLPEEMQLKSEGNKKFGGGGGGKHYGGNGGRGRGGRGGWRGGGGRGRGGRGRN*