AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008720 MtrunA17_Chr7g0219021 84.791 263 30 2 1 263 1 253 2.42e-125 356
Msa1008720 MtrunA17_Chr7g0219031 79.245 106 22 0 1 106 1 106 2.53e-59 184
Msa1008720 MtrunA17_Chr4g0061451 70.161 124 33 2 1 121 1 123 2.90e-53 173
Msa1008720 MtrunA17_Chr3g0086861 61.719 128 45 2 1 124 1 128 5.77e-51 172
Msa1008720 MtrunA17_Chr3g0121631 52.941 119 51 2 1 119 1 114 4.14e-36 125
Msa1008720 MtrunA17_Chr4g0035001 53.947 76 35 0 41 116 7 82 1.55e-24 96.3
Msa1008720 MtrunA17_Chr3g0119311 43.750 96 48 1 41 130 37 132 8.74e-24 93.6
Msa1008720 MtrunA17_Chr4g0035051 50.000 84 38 1 37 116 1 84 1.19e-22 89.7
Msa1008720 MtrunA17_Chr4g0035031 48.684 76 39 0 41 116 9 84 5.79e-22 90.1
Msa1008720 MtrunA17_Chr7g0266751 44.444 90 49 1 27 116 20 108 1.02e-20 85.5
Msa1008720 MtrunA17_Chr7g0263001 40.164 122 62 2 1 119 1 114 4.63e-20 84.0
Msa1008720 MtrunA17_Chr4g0058151 43.878 98 55 0 27 124 203 300 7.56e-20 86.7
Msa1008720 MtrunA17_Chr4g0058151 37.634 93 58 0 41 133 123 215 1.76e-13 68.9
Msa1008720 MtrunA17_Chr2g0278661 46.053 76 41 0 41 116 8 83 8.28e-20 85.9
Msa1008720 MtrunA17_Chr4g0031091 38.462 91 56 0 26 116 19 109 9.32e-20 82.0
Msa1008720 MtrunA17_Chr3g0116631 38.542 96 54 1 28 123 199 289 1.26e-19 85.9
Msa1008720 MtrunA17_Chr3g0116631 40.476 84 49 1 40 122 109 192 7.72e-11 61.2
Msa1008720 MtrunA17_Chr3g0101061 41.071 112 53 3 19 119 8 117 1.34e-18 85.1
Msa1008720 MtrunA17_Chr1g0168601 47.368 76 40 0 41 116 154 229 5.64e-18 80.5
Msa1008720 MtrunA17_Chr4g0042161 41.758 91 51 1 35 123 44 134 8.71e-18 77.8
Msa1008720 MtrunA17_Chr1g0181111 41.667 84 49 0 41 124 197 280 1.21e-17 80.5
Msa1008720 MtrunA17_Chr4g0050781 40.789 76 45 0 41 116 8 83 1.69e-17 78.6
Msa1008720 MtrunA17_Chr1g0210241 41.772 79 46 0 41 119 8 86 1.80e-17 79.7
Msa1008720 MtrunA17_Chr3g0088511 41.667 96 51 3 23 114 12 106 1.06e-16 74.7
Msa1008720 MtrunA17_Chr5g0447761 48.148 81 40 1 39 119 5 83 2.88e-16 78.2
Msa1008720 MtrunA17_Chr5g0447761 34.568 81 52 1 39 119 105 184 5.86e-11 62.4
Msa1008720 MtrunA17_Chr2g0290191 43.373 83 45 1 37 119 1 81 4.81e-16 77.4
Msa1008720 MtrunA17_Chr2g0290191 32.692 104 69 1 33 136 99 201 6.20e-11 62.0
Msa1008720 MtrunA17_Chr5g0419351 35.294 102 62 2 42 142 12 110 3.82e-15 71.2
Msa1008720 MtrunA17_Chr6g0481071 37.500 80 50 0 41 120 96 175 5.27e-15 71.2
Msa1008720 MtrunA17_Chr6g0449481 31.944 144 91 4 7 148 99 237 7.19e-15 73.6
Msa1008720 MtrunA17_Chr5g0406171 31.515 165 104 4 42 199 133 295 8.11e-15 72.8
Msa1008720 MtrunA17_Chr1g0198431 38.272 81 50 0 36 116 188 268 9.15e-15 72.4
Msa1008720 MtrunA17_Chr3g0127751 26.950 141 101 2 18 157 3 142 2.34e-14 70.9
Msa1008720 MtrunA17_Chr3g0135111 44.444 81 43 1 40 120 10 88 2.64e-14 72.0
Msa1008720 MtrunA17_Chr7g0267571 43.023 86 49 0 38 123 210 295 2.74e-14 71.6
Msa1008720 MtrunA17_Chr7g0267571 31.092 119 76 1 41 159 110 222 5.79e-12 64.7
Msa1008720 MtrunA17_Chr1g0186351 40.506 79 45 1 41 119 7 83 3.17e-14 72.0
Msa1008720 MtrunA17_Chr1g0186351 38.636 88 52 2 37 123 109 195 5.57e-13 68.2
Msa1008720 MtrunA17_Chr4g0070231 40.260 77 46 0 42 118 133 209 3.87e-14 71.6
Msa1008720 MtrunA17_Chr7g0276531 40.741 81 47 1 41 121 19 98 4.60e-14 70.1
Msa1008720 MtrunA17_Chr8g0344491 38.961 77 47 0 42 118 149 225 6.21e-14 70.9
Msa1008720 MtrunA17_Chr4g0042151 41.026 78 46 0 42 119 46 123 6.72e-14 68.2
Msa1008720 MtrunA17_Chr8g0360551 32.759 116 63 3 6 116 43 148 2.05e-13 69.7
Msa1008720 MtrunA17_Chr4g0065741 38.372 86 49 1 38 123 69 150 2.50e-13 66.2
Msa1008720 MtrunA17_Chr3g0144311 35.417 96 56 3 31 121 16 110 3.22e-13 68.2
Msa1008720 MtrunA17_Chr8g0346011 45.000 60 33 0 40 99 37 96 4.05e-13 67.8
Msa1008720 MtrunA17_Chr4g0017401 32.500 120 71 4 41 153 17 133 4.23e-13 67.4
Msa1008720 MtrunA17_Chr3g0139111 37.662 77 48 0 42 118 147 223 6.02e-13 68.2
Msa1008720 MtrunA17_Chr7g0276201 35.366 82 53 0 40 121 104 185 8.20e-13 67.8
Msa1008720 MtrunA17_Chr1g0177101 34.884 86 56 0 38 123 205 290 1.04e-12 67.0
Msa1008720 MtrunA17_Chr4g0068631 40.698 86 47 3 40 121 88 173 1.80e-12 67.0
Msa1008720 MtrunA17_Chr5g0426311 38.961 77 46 1 41 117 17 92 2.75e-12 65.5
Msa1008720 MtrunA17_Chr3g0110211 40.741 81 47 1 40 119 112 192 2.98e-12 65.9
Msa1008720 MtrunA17_Chr4g0038111 36.937 111 63 3 42 152 341 444 3.11e-12 66.2
Msa1008720 MtrunA17_Chr8g0375101 37.349 83 50 1 37 119 1 81 7.94e-12 64.7
Msa1008720 MtrunA17_Chr5g0430471 32.000 75 51 0 39 113 38 112 1.07e-11 61.2
Msa1008720 MtrunA17_Chr5g0402191 37.349 83 50 1 37 119 1 81 1.31e-11 63.9
Msa1008720 MtrunA17_Chr4g0018581 36.585 82 52 0 35 116 446 527 1.32e-11 64.3
Msa1008720 MtrunA17_Chr7g0259641 32.174 115 74 2 7 119 240 352 1.82e-11 63.9
Msa1008720 MtrunA17_Chr4g0045921 31.356 118 72 3 7 116 35 151 3.05e-11 62.8
Msa1008720 MtrunA17_Chr3g0120721 36.585 82 50 1 38 119 16 95 3.95e-11 62.4
Msa1008720 MtrunA17_Chr7g0259671 37.838 74 46 0 40 113 279 352 7.84e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008720 AT5G61030.2 63.025 119 44 0 1 119 1 119 1.10e-52 174
Msa1008720 AT5G61030.1 63.025 119 44 0 1 119 1 119 1.10e-52 174
Msa1008720 AT1G74230.1 59.322 118 41 3 1 118 1 111 1.71e-43 149
Msa1008720 AT4G13850.4 49.580 119 55 2 1 119 1 114 6.82e-32 114
Msa1008720 AT3G23830.2 48.333 120 57 2 1 120 1 115 7.51e-32 114
Msa1008720 AT3G23830.1 48.333 120 57 2 1 120 1 115 7.51e-32 114
Msa1008720 AT4G13850.3 49.580 119 55 2 1 119 1 114 7.71e-32 115
Msa1008720 AT4G13850.2 49.580 119 55 2 1 119 1 114 9.96e-32 115
Msa1008720 AT5G06210.1 46.087 115 59 2 17 130 10 122 1.81e-27 103
Msa1008720 AT4G13850.1 50.000 144 64 3 1 144 1 136 4.13e-27 103
Msa1008720 AT2G21660.2 51.316 76 37 0 41 116 9 84 2.68e-22 90.5
Msa1008720 AT4G39260.3 45.556 90 45 1 41 130 7 92 2.91e-22 88.6
Msa1008720 AT2G21660.1 51.316 76 37 0 41 116 9 84 4.07e-22 90.5
Msa1008720 AT1G18630.1 49.383 81 41 0 36 116 32 112 7.07e-22 89.4
Msa1008720 AT3G08000.1 53.086 81 38 0 41 121 42 122 6.73e-21 86.3
Msa1008720 AT5G59865.1 45.833 96 51 1 24 119 11 105 1.51e-20 84.7
Msa1008720 AT4G39260.1 47.368 76 40 0 41 116 7 82 5.80e-20 84.7
Msa1008720 AT3G26420.1 44.318 88 45 1 41 128 8 91 2.08e-19 85.1
Msa1008720 AT4G24770.1 44.304 79 44 0 41 119 245 323 8.55e-19 84.7
Msa1008720 AT4G24770.1 40.476 84 49 1 40 122 150 233 7.66e-13 67.8
Msa1008720 AT4G24770.2 44.304 79 44 0 41 119 245 323 8.55e-19 84.7
Msa1008720 AT4G24770.2 40.476 84 49 1 40 122 150 233 7.66e-13 67.8
Msa1008720 AT5G47320.1 39.831 118 62 2 1 118 1 109 1.76e-18 81.6
Msa1008720 AT2G27330.1 43.182 88 47 2 27 114 11 95 2.10e-18 79.0
Msa1008720 AT5G04280.1 40.777 103 57 1 40 142 7 105 2.31e-18 83.2
Msa1008720 AT5G50250.1 43.210 81 46 0 41 121 208 288 3.16e-18 82.4
Msa1008720 AT5G50250.1 41.667 84 48 1 40 122 113 196 2.94e-13 68.6
Msa1008720 AT4G13860.1 48.684 76 39 0 39 114 2 77 6.57e-18 76.6
Msa1008720 AT5G55550.5 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1008720 AT5G55550.4 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1008720 AT5G55550.9 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1008720 AT5G55550.7 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1008720 AT5G55550.1 50.633 79 37 1 41 119 7 83 7.78e-18 82.8
Msa1008720 AT5G55550.2 50.633 79 37 1 41 119 7 83 9.04e-18 82.8
Msa1008720 AT5G55550.3 50.633 79 37 1 41 119 7 83 9.04e-18 82.8
Msa1008720 AT5G55550.6 50.633 79 37 1 41 119 7 83 9.04e-18 82.8
Msa1008720 AT5G55550.11 50.633 79 37 1 41 119 7 83 9.04e-18 82.8
Msa1008720 AT4G26650.1 46.067 89 45 2 32 119 6 92 3.44e-17 80.9
Msa1008720 AT4G26650.2 46.067 89 45 2 32 119 3 89 3.45e-17 80.9
Msa1008720 AT5G55550.10 53.521 71 31 1 41 111 7 75 1.27e-16 79.7
Msa1008720 AT5G55550.8 53.521 71 31 1 41 111 7 75 1.35e-16 79.3
Msa1008720 AT2G37220.1 41.463 82 46 1 41 122 205 284 1.62e-16 77.8
Msa1008720 AT2G37220.1 41.892 74 43 0 41 114 92 165 5.84e-12 64.7
Msa1008720 AT3G07810.1 44.304 79 42 1 41 119 7 83 1.88e-16 79.0
Msa1008720 AT3G07810.2 44.304 79 42 1 41 119 7 83 1.99e-16 79.0
Msa1008720 AT3G46020.1 39.175 97 57 1 39 133 6 102 2.75e-16 72.8
Msa1008720 AT2G37510.1 40.506 79 47 0 36 114 30 108 5.58e-16 73.2
Msa1008720 AT1G22330.1 40.777 103 57 3 40 139 17 118 1.85e-15 74.7
Msa1008720 AT3G53460.1 40.244 82 47 1 41 122 258 337 1.92e-15 75.5
Msa1008720 AT3G53460.3 40.244 82 47 1 41 122 258 337 1.92e-15 75.5
Msa1008720 AT3G53460.2 40.244 82 47 1 41 122 258 337 1.92e-15 75.5
Msa1008720 AT5G47620.1 43.373 83 45 1 37 119 3 83 2.32e-15 75.5
Msa1008720 AT5G47620.2 43.373 83 45 1 37 119 3 83 2.32e-15 75.5
Msa1008720 AT5G47620.5 43.373 83 45 1 37 119 3 83 2.32e-15 75.5
Msa1008720 AT3G53460.4 40.244 82 47 1 41 122 279 358 2.60e-15 75.1
Msa1008720 AT2G33410.1 44.304 79 42 1 41 119 7 83 2.98e-15 75.1
Msa1008720 AT2G46780.1 35.849 106 62 3 41 143 23 125 4.24e-15 74.3
Msa1008720 AT2G46780.2 35.849 106 62 3 41 143 23 125 4.24e-15 74.3
Msa1008720 AT1G76460.1 41.176 85 48 2 41 124 25 108 5.02e-15 73.6
Msa1008720 AT4G39260.2 47.706 109 51 1 41 149 7 109 5.47e-15 70.1
Msa1008720 AT3G20930.1 35.714 112 58 2 20 125 270 373 7.96e-15 73.9
Msa1008720 AT4G14300.1 36.607 112 69 1 41 152 7 116 9.07e-15 73.9
Msa1008720 AT4G14300.2 36.607 112 69 1 41 152 7 116 9.07e-15 73.9
Msa1008720 AT1G60000.1 43.421 76 43 0 41 116 178 253 1.22e-14 72.0
Msa1008720 AT3G14100.1 37.662 77 48 0 42 118 146 222 1.32e-14 73.6
Msa1008720 AT2G21690.1 40.741 81 47 1 43 122 10 90 2.01e-14 68.6
Msa1008720 AT4G13860.2 55.932 59 26 0 56 114 2 60 2.27e-14 67.0
Msa1008720 AT3G52380.1 43.529 85 48 0 38 122 217 301 3.54e-14 71.6
Msa1008720 AT3G52380.1 41.333 75 44 0 41 115 117 191 4.25e-14 71.2
Msa1008720 AT5G47620.4 51.613 62 30 0 37 98 3 64 3.56e-14 72.0
Msa1008720 AT1G13690.1 34.314 102 63 2 42 142 15 113 4.96e-14 68.9
Msa1008720 AT1G60650.2 36.792 106 55 2 39 136 11 112 5.06e-14 70.9
Msa1008720 AT1G60650.1 36.792 106 55 2 39 136 11 112 5.06e-14 70.9
Msa1008720 AT5G54580.1 40.860 93 52 1 27 119 46 135 8.42e-14 67.8
Msa1008720 AT1G54080.1 36.364 77 49 0 42 118 150 226 1.08e-13 70.9
Msa1008720 AT1G20880.2 39.535 86 48 3 41 124 25 108 1.10e-13 69.7
Msa1008720 AT1G20880.3 39.535 86 48 3 41 124 25 108 1.10e-13 69.7
Msa1008720 AT1G20880.1 39.535 86 48 3 41 124 25 108 1.10e-13 69.7
Msa1008720 AT1G22910.2 35.106 94 55 3 40 129 13 104 1.52e-13 68.9
Msa1008720 AT1G22910.1 35.106 94 55 3 40 129 13 104 1.62e-13 68.9
Msa1008720 AT1G78260.1 40.260 77 45 1 41 117 18 93 2.70e-13 68.6
Msa1008720 AT1G33470.3 35.714 98 57 3 41 134 8 103 3.46e-13 67.8
Msa1008720 AT1G17370.2 37.662 77 48 0 42 118 141 217 4.00e-13 68.9
Msa1008720 AT1G17370.1 37.662 77 48 0 42 118 141 217 4.22e-13 68.9
Msa1008720 AT1G33470.1 35.714 98 57 3 41 134 8 103 4.26e-13 67.4
Msa1008720 AT1G33470.2 35.714 98 57 3 41 134 8 103 4.29e-13 67.4
Msa1008720 AT1G78260.2 39.744 78 46 1 40 117 17 93 5.25e-13 67.8
Msa1008720 AT3G20930.2 34.188 117 58 3 20 125 270 378 1.02e-12 67.8
Msa1008720 AT1G22910.3 35.484 93 54 3 41 129 14 104 1.17e-12 67.4
Msa1008720 AT1G73530.1 34.146 82 54 0 39 120 76 157 2.62e-12 64.3
Msa1008720 AT3G15010.1 31.897 116 64 3 6 116 45 150 2.86e-12 66.6
Msa1008720 AT3G15010.2 31.897 116 64 3 6 116 45 150 2.86e-12 66.6
Msa1008720 AT4G16280.2 39.773 88 49 3 38 121 118 205 5.84e-12 65.9
Msa1008720 AT4G16280.4 39.773 88 49 3 38 121 43 130 6.26e-12 65.9
Msa1008720 AT1G47490.1 36.170 94 59 1 42 134 199 292 6.67e-12 65.5
Msa1008720 AT4G16280.3 39.773 88 49 3 38 121 118 205 6.99e-12 65.5
Msa1008720 AT1G54080.2 34.568 81 49 1 42 118 150 230 7.03e-12 65.5
Msa1008720 AT1G47490.2 36.170 94 59 1 42 134 199 292 7.48e-12 64.7
Msa1008720 AT1G58470.2 39.241 79 46 1 41 119 7 83 7.90e-12 65.1
Msa1008720 AT1G58470.1 39.241 79 46 1 41 119 7 83 7.90e-12 65.1
Msa1008720 AT3G13224.2 28.125 96 64 1 35 125 104 199 8.78e-12 64.7
Msa1008720 AT3G13224.2 34.831 89 56 1 31 119 10 96 2.33e-11 63.5
Msa1008720 AT5G51300.1 30.303 132 69 1 42 150 482 613 8.97e-12 65.5
Msa1008720 AT5G51300.2 30.303 132 69 1 42 150 482 613 8.97e-12 65.5
Msa1008720 AT5G51300.3 30.303 132 69 1 42 150 482 613 8.97e-12 65.5
Msa1008720 AT2G19380.1 34.021 97 61 2 30 126 398 491 1.36e-11 64.7
Msa1008720 AT3G13224.3 32.184 87 57 1 33 119 3 87 1.56e-11 63.9
Msa1008720 AT3G13224.3 28.125 96 64 1 35 125 95 190 1.66e-11 63.9
Msa1008720 AT1G47500.1 35.106 94 60 1 42 134 201 294 1.84e-11 63.9
Msa1008720 AT5G19960.1 38.298 94 54 2 42 132 9 101 2.09e-11 63.5
Msa1008720 AT1G49600.1 33.613 119 78 1 42 159 215 333 2.52e-11 63.5
Msa1008720 AT5G08695.1 32.500 80 54 0 41 120 228 307 2.96e-11 63.9
Msa1008720 AT2G22100.1 35.556 90 53 2 33 122 156 240 2.98e-11 63.2
Msa1008720 AT5G40490.1 38.043 92 51 2 36 122 121 211 3.02e-11 63.5
Msa1008720 AT5G40490.1 36.585 82 50 1 38 119 40 119 5.12e-11 62.8
Msa1008720 AT4G36960.1 37.975 79 47 1 41 119 4 80 3.13e-11 63.2
Msa1008720 AT4G36960.2 37.975 79 47 1 41 119 4 80 3.13e-11 63.2
Msa1008720 AT1G49760.1 35.443 79 51 0 39 117 44 122 3.16e-11 63.5
Msa1008720 AT1G49760.2 35.443 79 51 0 39 117 44 122 3.16e-11 63.5
Msa1008720 AT2G43370.2 31.765 85 58 0 40 124 64 148 3.30e-11 61.6
Msa1008720 AT5G53680.1 35.065 77 49 1 40 116 13 88 3.89e-11 60.8
Msa1008720 AT1G17640.2 40.506 79 45 1 41 119 67 143 4.11e-11 62.8
Msa1008720 AT1G17640.1 40.506 79 45 1 41 119 67 143 4.11e-11 62.8
Msa1008720 AT1G17640.3 40.506 79 45 1 41 119 67 143 4.11e-11 62.8
Msa1008720 AT1G49600.3 33.613 119 78 1 42 159 215 333 4.12e-11 63.2
Msa1008720 AT1G49600.2 33.613 119 78 1 42 159 215 333 4.12e-11 63.2
Msa1008720 AT1G47500.2 35.106 94 60 1 42 134 201 294 4.24e-11 62.8
Msa1008720 AT5G53720.1 38.158 76 46 1 41 116 10 84 4.29e-11 58.9
Msa1008720 AT4G20030.1 30.769 78 54 0 39 116 39 116 7.76e-11 59.3
Msa1008720 AT4G00830.3 28.049 82 59 0 40 121 116 197 8.23e-11 62.4
Msa1008720 AT4G00830.5 28.049 82 59 0 40 121 116 197 8.23e-11 62.4
Msa1008720 AT2G37510.2 30.769 104 47 1 36 114 30 133 8.57e-11 59.7
Msa1008720 AT5G11412.1 36.364 77 48 1 40 116 52 127 8.74e-11 59.7
Msa1008720 AT4G00830.2 28.049 82 59 0 40 121 116 197 8.85e-11 62.0
Msa1008720 AT4G00830.1 28.049 82 59 0 40 121 116 197 8.85e-11 62.0
Msa1008720 AT4G00830.6 28.049 82 59 0 40 121 116 197 8.85e-11 62.0

Find 98 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGCGTTCTTTGGTAAAA+TGG 0.181499 7_1:-9306544 Msa1008720:CDS
ATTCAGCAGCAACTCTAATT+TGG 0.204920 7_1:-9304260 Msa1008720:CDS
ACAGGCAGGTCCCGAGGTTT+TGG 0.269411 7_1:-9305466 Msa1008720:CDS
GGTGGTGGTGGCGGAAATTA+TGG 0.279552 7_1:-9304400 Msa1008720:CDS
CCTGGTTATCCATGGCTTGC+AGG 0.291915 7_1:+9305404 None:intergenic
CGTACCTTGAAAAGCGATTA+TGG 0.302599 7_1:+9307734 None:intergenic
AGTGGCGGTGGTGGAAATTA+TGG 0.311221 7_1:-9304457 Msa1008720:CDS
TGTGCTTGACAGCAGAATTC+TGG 0.314240 7_1:+9306511 None:intergenic
GGTGGTGGTGGCGGAAATTA+TGG 0.318069 7_1:-9304421 Msa1008720:CDS
GTTTGAGCAATGGCGTTCTT+TGG 0.330058 7_1:-9306552 Msa1008720:exon
GGCGGTGGTGGCGGCGGCTA+TGG 0.332870 7_1:-9304499 Msa1008720:CDS
GAAAGGGCACGTCCTGGATT+TGG 0.363001 7_1:-9304553 Msa1008720:CDS
CGCTATGGAGAAGTTCTTGA+TGG 0.365325 7_1:-9306286 Msa1008720:intron
TTCAGCAGCAACTCTAATTT+GGG 0.367310 7_1:-9304259 Msa1008720:CDS
AGCAACTCTAATTTGGGATA+TGG 0.368185 7_1:-9304253 Msa1008720:CDS
GGCGGCTATGGCGGTGGTGG+CGG 0.369506 7_1:-9304487 Msa1008720:CDS
GGTGGCTATGGCGGTGGTGG+CGG 0.379502 7_1:-9304508 Msa1008720:CDS
ATTATCATGGATCGTGAAAC+AGG 0.392250 7_1:-9305484 Msa1008720:CDS
GGCTATGGCGGTGGTGGCGG+CGG 0.402645 7_1:-9304505 Msa1008720:CDS
GGTTATGGCGGCGGTGGCTA+TGG 0.410612 7_1:-9304520 Msa1008720:CDS
GGTGGCGGCGGCTATGGCGG+TGG 0.411672 7_1:-9304493 Msa1008720:CDS
GGCGGTGGCTATGGTGGTGG+TGG 0.412717 7_1:-9304433 Msa1008720:CDS
GGAGAAGGTAAGAATGAATT+CGG 0.414846 7_1:-9304208 Msa1008720:CDS
GGCGGCGGCTATGGCGGTGG+TGG 0.419000 7_1:-9304490 Msa1008720:CDS
GGCTATGGCGGTGGTGGCGG+TGG 0.420092 7_1:-9304484 Msa1008720:CDS
GGCGGTGGCTATGGCGGTGG+TGG 0.431899 7_1:-9304511 Msa1008720:CDS
AATTATGGTGGCGGTGGCTA+TGG 0.434778 7_1:-9304442 Msa1008720:CDS
TGGCCACCAGTATAGCTGTC+TGG 0.436161 7_1:+9304313 None:intergenic
GCTATACTGGTGGCCATGTC+GGG 0.440508 7_1:-9304306 Msa1008720:CDS
GGTGGCTATGGTGGTGGTGG+CGG 0.440709 7_1:-9304430 Msa1008720:CDS
GGTGGTGGCGGCGGCTATGG+CGG 0.446142 7_1:-9304496 Msa1008720:CDS
ATGGCGTTCTTTGGTAAAAT+GGG 0.448549 7_1:-9306543 Msa1008720:CDS
CTTCTCCTATTCCGTCATCC+TGG 0.452476 7_1:+9304224 None:intergenic
GGTGGTGGCGGTGGCTATAG+TGG 0.453178 7_1:-9304475 Msa1008720:CDS
TCAGATTGATCATTGTTCTC+TGG 0.454360 7_1:+9304160 None:intergenic
CGTCCTGGATTTGGTGGTGG+TGG 0.454483 7_1:-9304544 Msa1008720:CDS
TGGTTGTCACAGGAACTTCA+TGG 0.455403 7_1:-9304604 Msa1008720:intron
GGTGGTGGTTATGGCGGCGG+TGG 0.457131 7_1:-9304526 Msa1008720:CDS
GGCCACCAGTATAGCTGTCT+GGG 0.458472 7_1:+9304314 None:intergenic
TGCTGTCAAGCACATCAATC+AGG 0.461224 7_1:-9306502 Msa1008720:CDS
GGAAATTATGGTGGTGGTGG+CGG 0.465603 7_1:-9304409 Msa1008720:CDS
TCTTTCAGCAAAGATTATCA+TGG 0.471143 7_1:-9305497 Msa1008720:intron
GGTGGTGGTGGTTATGGCGG+CGG 0.471643 7_1:-9304529 Msa1008720:CDS
CCTGGATTTGGTGGTGGTGG+TGG 0.475490 7_1:-9304541 Msa1008720:CDS
GGTGGCTATAGTGGCGGTGG+TGG 0.482262 7_1:-9304466 Msa1008720:CDS
GGCGGCGGTGGCTATGGCGG+TGG 0.494933 7_1:-9304514 Msa1008720:CDS
TATGGTGGTGGTGGTACATA+TGG 0.495451 7_1:-9304382 Msa1008720:CDS
ATCCATGGCTTGCAGGGCAG+AGG 0.505179 7_1:+9305411 None:intergenic
GGTGGCGGTGGCTATGGTGG+TGG 0.511997 7_1:-9304436 Msa1008720:CDS
AGCCACCAGGATGACGGAAT+AGG 0.512460 7_1:-9304229 Msa1008720:CDS
GGCGGTGGCTATAGTGGCGG+TGG 0.516623 7_1:-9304469 Msa1008720:CDS
CGCAATGATTATAACAGTAG+TGG 0.517265 7_1:-9304358 Msa1008720:CDS
AGCTATACTGGTGGCCATGT+CGG 0.518050 7_1:-9304307 Msa1008720:CDS
GCTACAGAAAGGGCACGTCC+TGG 0.522628 7_1:-9304559 Msa1008720:CDS
CTGGTTATCCATGGCTTGCA+GGG 0.522966 7_1:+9305405 None:intergenic
GGCGGAAATTATGGTGGTGG+TGG 0.524909 7_1:-9304412 Msa1008720:CDS
TATGGTGGCGGTGGCTATGG+TGG 0.530534 7_1:-9304439 Msa1008720:CDS
CCTGCAAGCCATGGATAACC+AGG 0.536544 7_1:-9305404 Msa1008720:intron
GTCGGGACTACTTATGCAGC+TGG 0.539987 7_1:-9304289 Msa1008720:CDS
AAATATCTGACCTCACCTAC+GGG 0.541274 7_1:+9304123 None:intergenic
GGCACATGGTTGTTATCTAA+CGG 0.545472 7_1:+9304181 None:intergenic
AGTGAACTATGCTACAGAAA+GGG 0.549793 7_1:-9304569 Msa1008720:CDS
GGCGGAAATTATGGTGGTGG+TGG 0.550547 7_1:-9304391 Msa1008720:CDS
GCACGTCCTGGATTTGGTGG+TGG 0.551335 7_1:-9304547 Msa1008720:CDS
TCATGGATCGTGAAACAGGC+AGG 0.555548 7_1:-9305480 Msa1008720:CDS
AGGGCACGTCCTGGATTTGG+TGG 0.560582 7_1:-9304550 Msa1008720:CDS
ATCCTCTGCCCTGCAAGCCA+TGG 0.561128 7_1:-9305413 Msa1008720:CDS
AGTTATGAAGCCAAAACCTC+GGG 0.561538 7_1:+9305456 None:intergenic
GGTGGCGGAAATTATGGTGG+TGG 0.561564 7_1:-9304394 Msa1008720:CDS
GGTGGCGGAAATTATGGTGG+TGG 0.561564 7_1:-9304415 Msa1008720:CDS
AAAATATCTGACCTCACCTA+CGG 0.565624 7_1:+9304122 None:intergenic
GATCATTGTTCTCTGGCACA+TGG 0.570782 7_1:+9304167 None:intergenic
TATGGCGGCGGTGGCTATGG+CGG 0.577355 7_1:-9304517 Msa1008720:CDS
GGTGGTGGCGGAAATTATGG+TGG 0.577570 7_1:-9304397 Msa1008720:CDS
GGTGGTGGCGGAAATTATGG+TGG 0.577570 7_1:-9304418 Msa1008720:CDS
GGTGGAAATTATGGTGGCGG+TGG 0.579466 7_1:-9304448 Msa1008720:CDS
GAGTGAACTATGCTACAGAA+AGG 0.582117 7_1:-9304570 Msa1008720:CDS
TGATAATACCTGGTTATCCA+TGG 0.583626 7_1:+9305396 None:intergenic
TATGGTAGCCACCAGGATGA+CGG 0.586796 7_1:-9304235 Msa1008720:CDS
GGTGGTGGAAATTATGGTGG+CGG 0.594867 7_1:-9304451 Msa1008720:CDS
CATAACTTTCGCAACTAGCG+AGG 0.595409 7_1:-9305440 Msa1008720:CDS
CTGCATAAGTAGTCCCGACA+TGG 0.604557 7_1:+9304293 None:intergenic
AAGTTATGAAGCCAAAACCT+CGG 0.608782 7_1:+9305455 None:intergenic
CGTGAAACAGGCAGGTCCCG+AGG 0.612383 7_1:-9305472 Msa1008720:CDS
CAGGATGACGGAATAGGAGA+AGG 0.614651 7_1:-9304223 Msa1008720:CDS
CTCCTATTCCGTCATCCTGG+TGG 0.633150 7_1:+9304227 None:intergenic
GCCCCAGACAGCTATACTGG+TGG 0.637102 7_1:-9304316 Msa1008720:CDS
GGCGGTGGTGGAAATTATGG+TGG 0.639052 7_1:-9304454 Msa1008720:CDS
TATGCTGAGACCCGTAGGTG+AGG 0.642366 7_1:-9304133 None:intergenic
TGTCACAGGAACTTCATGGT+CGG 0.655084 7_1:-9304600 Msa1008720:intron
CTGATTGCTTGAAATAACGA+AGG 0.656640 7_1:+9306462 None:intergenic
TTTGGGATATGGTAGCCACC+AGG 0.660216 7_1:-9304242 Msa1008720:CDS
ATGACTATGCTGAGACCCGT+AGG 0.661801 7_1:-9304138 Msa1008720:CDS
GCCACCAGTATAGCTGTCTG+GGG 0.683848 7_1:+9304315 None:intergenic
GGGACTACTTATGCAGCTGG+TGG 0.685565 7_1:-9304286 Msa1008720:CDS
AGTAGTGGAAGCTATGCAAG+TGG 0.688222 7_1:-9304343 Msa1008720:CDS
GGTGGCGGTGGCTATAGTGG+CGG 0.689439 7_1:-9304472 Msa1008720:CDS
AGTGGAAGCTATGCAAGTGG+TGG 0.727125 7_1:-9304340 Msa1008720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAACTATTCAATAATTT+CGG - chr7_1:9305037-9305056 Msa1008720:intron 10.0%
!! ATCATGTTAAATTTAAAAAA+TGG - chr7_1:9305501-9305520 Msa1008720:intron 10.0%
!!! TTATTATTTCTAACTTATTT+CGG + chr7_1:9306652-9306671 None:intergenic 10.0%
!!! TATTTGTACAATTTTTTATA+TGG - chr7_1:9307156-9307175 Msa1008720:intron 10.0%
!! TTTATTGTACAAAATTCAAT+TGG - chr7_1:9304349-9304368 Msa1008720:CDS 15.0%
!! TTATTGTACAAAATTCAATT+GGG - chr7_1:9304350-9304369 Msa1008720:CDS 15.0%
!!! TGCTATTTTAATTCTTTTTA+TGG - chr7_1:9305219-9305238 Msa1008720:intron 15.0%
!!! AATTAGAAATTCAAACTTTT+TGG + chr7_1:9305958-9305977 None:intergenic 15.0%
!!! TTTAATTTTAAAGAAAAGTC+CGG - chr7_1:9306030-9306049 Msa1008720:intron 15.0%
!! TCTATCAAATCATATATAAA+AGG + chr7_1:9306240-9306259 None:intergenic 15.0%
!! TAATAGTCATATAAAAAAAG+CGG - chr7_1:9306301-9306320 Msa1008720:CDS 15.0%
!! CTTGAAGAATATATTTAAAA+AGG - chr7_1:9306759-9306778 Msa1008720:intron 15.0%
!! TCAATTTGAATTTATGATAA+TGG + chr7_1:9307014-9307033 None:intergenic 15.0%
!!! TTCTTATTTACCTGTTAATT+GGG - chr7_1:9304258-9304277 Msa1008720:CDS 20.0%
!!! TTTTTCTTAGATGATTTTTG+CGG - chr7_1:9304459-9304478 Msa1008720:CDS 20.0%
!!! TTTAATTCTTTTTATGGAAC+CGG - chr7_1:9305225-9305244 Msa1008720:intron 20.0%
!! TCATAAGTTACAATTAACAA+TGG - chr7_1:9305273-9305292 Msa1008720:intron 20.0%
!!! TCAAATTTTAATCATAATGC+AGG - chr7_1:9305541-9305560 Msa1008720:intron 20.0%
!! ATATAAAATAAGCATCATAC+TGG + chr7_1:9305762-9305781 None:intergenic 20.0%
!!! GTATGATGCTTATTTTATAT+AGG - chr7_1:9305762-9305781 Msa1008720:intron 20.0%
!! AGAAATAATAAATGCATATG+TGG - chr7_1:9306661-9306680 Msa1008720:intron 20.0%
!! AAAAGGAAATTCTTTCAAAA+TGG - chr7_1:9306776-9306795 Msa1008720:intron 20.0%
!! AAAGGAAATTCTTTCAAAAT+GGG - chr7_1:9306777-9306796 Msa1008720:intron 20.0%
!!! ATTATTTTTGAATACTCAGT+CGG + chr7_1:9306820-9306839 None:intergenic 20.0%
!! AATGCTTAACAATGATAATT+TGG + chr7_1:9306911-9306930 None:intergenic 20.0%
!!! TATTTTTACCAAATTTTCCT+TGG - chr7_1:9306970-9306989 Msa1008720:intron 20.0%
!! AAATTGAAATATAACGACTT+GGG - chr7_1:9307027-9307046 Msa1008720:intron 20.0%
!! AAAATTGTACAAATAGAAGT+TGG + chr7_1:9307151-9307170 None:intergenic 20.0%
! TGAGATCAGAATTGAAAAAT+GGG + chr7_1:9304221-9304240 None:intergenic 25.0%
!! GTTCTTATTTACCTGTTAAT+TGG - chr7_1:9304257-9304276 Msa1008720:CDS 25.0%
!!! TTTTTCAGTATTTTTGACCT+AGG - chr7_1:9304297-9304316 Msa1008720:CDS 25.0%
! CAAAATATTAAGCATTACCT+AGG + chr7_1:9304317-9304336 None:intergenic 25.0%
! TTTGAGTGATGTTAATGTTA+TGG - chr7_1:9304432-9304451 Msa1008720:CDS 25.0%
! AATGAATGAATAGAGTTTGA+TGG - chr7_1:9304502-9304521 Msa1008720:CDS 25.0%
!! ACTTTAAGAGGTAAAAATCA+CGG - chr7_1:9304569-9304588 Msa1008720:CDS 25.0%
!! TAAATTTGTGTGTTTTACGA+GGG - chr7_1:9304603-9304622 Msa1008720:intron 25.0%
! TATTCAATAATTTCGGTACT+TGG - chr7_1:9305044-9305063 Msa1008720:intron 25.0%
!! TACCAATTTTTCATCATATC+AGG - chr7_1:9305657-9305676 Msa1008720:intron 25.0%
! AACCTGATATGATGAAAAAT+TGG + chr7_1:9305662-9305681 None:intergenic 25.0%
! ATTCAGATACAATTTACAAG+TGG + chr7_1:9305710-9305729 None:intergenic 25.0%
!!! TATAGGCTTTAATAGACTTT+TGG - chr7_1:9305779-9305798 Msa1008720:intron 25.0%
!!! TCAAACTTTTTGGTGTTTTT+TGG + chr7_1:9305948-9305967 None:intergenic 25.0%
! ATAATCATCATTTATTGCTG+TGG + chr7_1:9306076-9306095 None:intergenic 25.0%
! TAAAATCGCTCAAAATAAAG+TGG - chr7_1:9306162-9306181 Msa1008720:intron 25.0%
! AAAATCGCTCAAAATAAAGT+GGG - chr7_1:9306163-9306182 Msa1008720:intron 25.0%
! GAAAGAACATTAAAAATGAG+AGG + chr7_1:9306385-9306404 None:intergenic 25.0%
! TTTCGGCTAAATAAATGTAA+GGG + chr7_1:9306635-9306654 None:intergenic 25.0%
! ATTTCGGCTAAATAAATGTA+AGG + chr7_1:9306636-9306655 None:intergenic 25.0%
!!! TTATTTTTGAATACTCAGTC+GGG + chr7_1:9306819-9306838 None:intergenic 25.0%
! TTGCTTGTTTCACAAATTTA+AGG - chr7_1:9306848-9306867 Msa1008720:intron 25.0%
! CAAATTGAAATATAACGACT+TGG - chr7_1:9307026-9307045 Msa1008720:intron 25.0%
!! ATGCATATAGTATTAGTTTG+AGG - chr7_1:9307054-9307073 Msa1008720:intron 25.0%
!! TGCATATAGTATTAGTTTGA+GGG - chr7_1:9307055-9307074 Msa1008720:intron 25.0%
!! TGATAATGTGACAATTATTG+TGG - chr7_1:9307092-9307111 Msa1008720:intron 25.0%
! TTGTAGCATCTAAATTATGT+TGG - chr7_1:9307272-9307291 Msa1008720:intron 25.0%
GTGAGATCAGAATTGAAAAA+TGG + chr7_1:9304222-9304241 None:intergenic 30.0%
CTAATAGAAACCCAATTAAC+AGG + chr7_1:9304271-9304290 None:intergenic 30.0%
! GTAAATTTGTGTGTTTTACG+AGG - chr7_1:9304602-9304621 Msa1008720:intron 30.0%
GCTTATTTGTACACGAAAAA+AGG + chr7_1:9304818-9304837 None:intergenic 30.0%
!!! AGTGGTAATAACAGGTTTTT+TGG + chr7_1:9304909-9304928 None:intergenic 30.0%
ATCATTTATCTTCCTCATAG+TGG + chr7_1:9304927-9304946 None:intergenic 30.0%
AATACATCAAACAGAGTACA+TGG + chr7_1:9305000-9305019 None:intergenic 30.0%
ATAATTTCGGTACTTGGAAA+TGG - chr7_1:9305050-9305069 Msa1008720:intron 30.0%
TAATTTCGGTACTTGGAAAT+GGG - chr7_1:9305051-9305070 Msa1008720:intron 30.0%
!! TTAAAAAAGGGTTCTAAGTG+GGG + chr7_1:9305116-9305135 None:intergenic 30.0%
!! CTTAAAAAAGGGTTCTAAGT+GGG + chr7_1:9305117-9305136 None:intergenic 30.0%
! TTGACCACCAAAATCTATTT+TGG + chr7_1:9305183-9305202 None:intergenic 30.0%
! TAAGTGATACTAATTTTCCG+TGG - chr7_1:9305306-9305325 Msa1008720:intron 30.0%
GGGGAATATCAAAACATAAA+GGG + chr7_1:9305836-9305855 None:intergenic 30.0%
TGGGGAATATCAAAACATAA+AGG + chr7_1:9305837-9305856 None:intergenic 30.0%
GATGATTATCAGTGTCAATT+TGG - chr7_1:9306087-9306106 Msa1008720:intron 30.0%
TGTCAATTTGGAGGAAAATT+CGG - chr7_1:9306099-9306118 Msa1008720:intron 30.0%
! ATGTTTTTCCCTTTCTGATT+TGG + chr7_1:9306135-9306154 None:intergenic 30.0%
ATCAGAAAGGGAAAAACATA+AGG - chr7_1:9306136-9306155 Msa1008720:intron 30.0%
TCAGAAAGGGAAAAACATAA+GGG - chr7_1:9306137-9306156 Msa1008720:intron 30.0%
AAATCGCTCAAAATAAAGTG+GGG - chr7_1:9306164-9306183 Msa1008720:intron 30.0%
!! ATAGAGTGCTTACTTTGTTT+TGG - chr7_1:9306255-9306274 Msa1008720:intron 30.0%
TAGTCATATAAAAAAAGCGG+CGG - chr7_1:9306304-9306323 Msa1008720:CDS 30.0%
TCTTTCAGCAAAGATTATCA+TGG - chr7_1:9306399-9306418 Msa1008720:intron 30.0%
TCATGAAAACTGATAATACC+TGG + chr7_1:9306513-9306532 None:intergenic 30.0%
! AAACACCTTTTGTTCATACA+AGG - chr7_1:9306578-9306597 Msa1008720:intron 30.0%
TATGTGGCTGTAATATCATA+AGG - chr7_1:9306677-9306696 Msa1008720:intron 30.0%
ACCATTATCATGATGAAAGA+TGG - chr7_1:9306940-9306959 Msa1008720:intron 30.0%
TCCATCTTTCATCATGATAA+TGG + chr7_1:9306944-9306963 None:intergenic 30.0%
AATGCTTACCAAGGAAAATT+TGG + chr7_1:9306981-9307000 None:intergenic 30.0%
! AAATTTTCCTTGGTAAGCAT+TGG - chr7_1:9306980-9306999 Msa1008720:intron 30.0%
! TAAATTATGTTGGTTGTCAC+AGG - chr7_1:9307282-9307301 Msa1008720:intron 30.0%
TGGGATTCAATGACTTTAAG+AGG - chr7_1:9304557-9304576 Msa1008720:CDS 35.0%
TAGGATTTAGTGACAGGATT+GGG + chr7_1:9304658-9304677 None:intergenic 35.0%
TTAGGATTTAGTGACAGGAT+TGG + chr7_1:9304659-9304678 None:intergenic 35.0%
! TCGCGGATTACGTAAAATAA+TGG - chr7_1:9304687-9304706 Msa1008720:intron 35.0%
ATAGCATCACTATAGTGTAG+TGG + chr7_1:9304771-9304790 None:intergenic 35.0%
! GCAACTTTGTTGTCAAATGA+CGG + chr7_1:9304796-9304815 None:intergenic 35.0%
AACCTGTTATTACCACTATG+AGG - chr7_1:9304912-9304931 Msa1008720:intron 35.0%
TTCCTCATAGTGGTAATAAC+AGG + chr7_1:9304917-9304936 None:intergenic 35.0%
AGATAAATGATGAACGCTAG+AGG - chr7_1:9304936-9304955 Msa1008720:intron 35.0%
GATAAATGATGAACGCTAGA+GGG - chr7_1:9304937-9304956 Msa1008720:intron 35.0%
!! GCTTAAAAAAGGGTTCTAAG+TGG + chr7_1:9305118-9305137 None:intergenic 35.0%
TGTAGGGAAGGCTTAAAAAA+GGG + chr7_1:9305128-9305147 None:intergenic 35.0%
TTGTAGGGAAGGCTTAAAAA+AGG + chr7_1:9305129-9305148 None:intergenic 35.0%
! TTTTAAGCCTTCCCTACAAA+TGG - chr7_1:9305130-9305149 Msa1008720:intron 35.0%
TTCCCTACAAATGGTGATTT+GGG - chr7_1:9305139-9305158 Msa1008720:intron 35.0%
!! CCAAAATCTATTTTGGAGGA+TGG + chr7_1:9305176-9305195 None:intergenic 35.0%
! CCATCCTCCAAAATAGATTT+TGG - chr7_1:9305173-9305192 Msa1008720:intron 35.0%
! TCCTCCAAAATAGATTTTGG+TGG - chr7_1:9305176-9305195 Msa1008720:intron 35.0%
!! ACCACCAAAATCTATTTTGG+AGG + chr7_1:9305180-9305199 None:intergenic 35.0%
! AATTCTTTTTATGGAACCGG+CGG - chr7_1:9305228-9305247 Msa1008720:intron 35.0%
ACCTTGAAAACATCAAACCA+CGG + chr7_1:9305326-9305345 None:intergenic 35.0%
!! TGTTTTCAAGGTTTGAGCAA+TGG - chr7_1:9305334-9305353 Msa1008720:intron 35.0%
AATGGCGTTCTTTGGTAAAA+TGG - chr7_1:9305352-9305371 Msa1008720:intron 35.0%
ATGGCGTTCTTTGGTAAAAT+GGG - chr7_1:9305353-9305372 Msa1008720:intron 35.0%
CTGATTGCTTGAAATAACGA+AGG + chr7_1:9305437-9305456 None:intergenic 35.0%
! TCATCTGCCAAGCTTTTTAT+TGG - chr7_1:9305464-9305483 Msa1008720:CDS 35.0%
CATACCTCCAATAAAAAGCT+TGG + chr7_1:9305474-9305493 None:intergenic 35.0%
! GTATTGTGATTGTGCGATTT+TGG - chr7_1:9305810-9305829 Msa1008720:intron 35.0%
TCCAACTTTCATAGTTAGTG+TGG - chr7_1:9305893-9305912 Msa1008720:intron 35.0%
TTCATTTGCTCTCATCTGTA+CGG - chr7_1:9305984-9306003 Msa1008720:intron 35.0%
GATTATCAGTGTCAATTTGG+AGG - chr7_1:9306090-9306109 Msa1008720:intron 35.0%
AATTTGGAGGAAAATTCGGA+TGG - chr7_1:9306103-9306122 Msa1008720:intron 35.0%
AATCGCTCAAAATAAAGTGG+GGG - chr7_1:9306165-9306184 Msa1008720:intron 35.0%
! GTATCACAGTTAAGCGATTT+TGG + chr7_1:9306192-9306211 None:intergenic 35.0%
AATCGCTTAACTGTGATACT+TGG - chr7_1:9306193-9306212 Msa1008720:intron 35.0%
AAAAGGCTTAGTTGCACTTT+GGG + chr7_1:9306223-9306242 None:intergenic 35.0%
TAAAAGGCTTAGTTGCACTT+TGG + chr7_1:9306224-9306243 None:intergenic 35.0%
ATTATCATGGATCGTGAAAC+AGG - chr7_1:9306412-9306431 Msa1008720:intron 35.0%
AAGTTATGAAGCCAAAACCT+CGG + chr7_1:9306444-9306463 None:intergenic 35.0%
TGATAATACCTGGTTATCCA+TGG + chr7_1:9306503-9306522 None:intergenic 35.0%
CTAAAAGTCACCAATTCACA+TGG - chr7_1:9306553-9306572 Msa1008720:exon 35.0%
! AGGTGTTTTACCATGTGAAT+TGG + chr7_1:9306566-9306585 None:intergenic 35.0%
CAACTCCTTGTATGAACAAA+AGG + chr7_1:9306586-9306605 None:intergenic 35.0%
! CTTTTGTTCATACAAGGAGT+TGG - chr7_1:9306584-9306603 Msa1008720:intron 35.0%
ATGTGACAATTATTGTGGCA+CGG - chr7_1:9307097-9307116 Msa1008720:intron 35.0%
CTTTGCAAACCTCAAAATGT+TGG - chr7_1:9307240-9307259 Msa1008720:intron 35.0%
! GAAACATTGCCAACATTTTG+AGG + chr7_1:9307252-9307271 None:intergenic 35.0%
AGTGAACTATGCTACAGAAA+GGG - chr7_1:9307327-9307346 Msa1008720:intron 35.0%
CGCAATGATTATAACAGTAG+TGG - chr7_1:9307538-9307557 Msa1008720:intron 35.0%
ATTCAGCAGCAACTCTAATT+TGG - chr7_1:9307636-9307655 Msa1008720:intron 35.0%
TTCAGCAGCAACTCTAATTT+GGG - chr7_1:9307637-9307656 Msa1008720:intron 35.0%
! AGCAACTCTAATTTGGGATA+TGG - chr7_1:9307643-9307662 Msa1008720:intron 35.0%
GGAGAAGGTAAGAATGAATT+CGG - chr7_1:9307688-9307707 Msa1008720:intron 35.0%
TCAGATTGATCATTGTTCTC+TGG + chr7_1:9307739-9307758 None:intergenic 35.0%
CGTACCTTGAAAAGCGATTA+TGG + chr7_1:9304165-9304184 None:intergenic 40.0%
TTTCATAGTGTTGTCAACCG+CGG - chr7_1:9304532-9304551 Msa1008720:CDS 40.0%
ACAGGTTAGGATTTAGTGAC+AGG + chr7_1:9304664-9304683 None:intergenic 40.0%
AAATCCTAACCTGTCAATCG+CGG - chr7_1:9304670-9304689 Msa1008720:intron 40.0%
AAACAGAGTACATGGTTGTG+TGG + chr7_1:9304992-9305011 None:intergenic 40.0%
CAAATCACCATTTGTAGGGA+AGG + chr7_1:9305140-9305159 None:intergenic 40.0%
CTTCCCTACAAATGGTGATT+TGG - chr7_1:9305138-9305157 Msa1008720:intron 40.0%
TCCCTACAAATGGTGATTTG+GGG - chr7_1:9305140-9305159 Msa1008720:intron 40.0%
TCCCCAAATCACCATTTGTA+GGG + chr7_1:9305144-9305163 None:intergenic 40.0%
ATCCCCAAATCACCATTTGT+AGG + chr7_1:9305145-9305164 None:intergenic 40.0%
! TGGTGATTTGGGGATGAAAT+CGG - chr7_1:9305150-9305169 Msa1008720:intron 40.0%
AAGTACAAACATTTCACCGC+CGG + chr7_1:9305247-9305266 None:intergenic 40.0%
! TCCGTGGTTTGATGTTTTCA+AGG - chr7_1:9305322-9305341 Msa1008720:intron 40.0%
AAAAAGCTTGGCAGATGACA+TGG + chr7_1:9305462-9305481 None:intergenic 40.0%
! TCTGCCAAGCTTTTTATTGG+AGG - chr7_1:9305467-9305486 Msa1008720:CDS 40.0%
CATAGCGAGAAAAAGCTTCT+CGG + chr7_1:9305597-9305616 None:intergenic 40.0%
TCGCACAATCACAATACTCT+GGG + chr7_1:9305807-9305826 None:intergenic 40.0%
ATCGCACAATCACAATACTC+TGG + chr7_1:9305808-9305827 None:intergenic 40.0%
GCCACACTAACTATGAAAGT+TGG + chr7_1:9305897-9305916 None:intergenic 40.0%
TCATTTGCTCTCATCTGTAC+GGG - chr7_1:9305985-9306004 Msa1008720:intron 40.0%
!!! CATCTGTACGGGTTGATTTT+TGG - chr7_1:9305996-9306015 Msa1008720:intron 40.0%
TGGAGACTACCAAATCAGAA+AGG - chr7_1:9306123-9306142 Msa1008720:intron 40.0%
GGAGACTACCAAATCAGAAA+GGG - chr7_1:9306124-9306143 Msa1008720:intron 40.0%
ATCGCTCAAAATAAAGTGGG+GGG - chr7_1:9306166-9306185 Msa1008720:intron 40.0%
AGTTATGAAGCCAAAACCTC+GGG + chr7_1:9306443-9306462 None:intergenic 40.0%
TTGTTCATACAAGGAGTTGG+AGG - chr7_1:9306587-9306606 Msa1008720:intron 40.0%
GAATACACCAATGCTTACCA+AGG + chr7_1:9306990-9307009 None:intergenic 40.0%
GAGTGAACTATGCTACAGAA+AGG - chr7_1:9307326-9307345 Msa1008720:intron 40.0%
GGCACATGGTTGTTATCTAA+CGG + chr7_1:9307718-9307737 None:intergenic 40.0%
!! GCAGCCATAATCGCTTTTCA+AGG - chr7_1:9304158-9304177 Msa1008720:CDS 45.0%
AGTCATTGAATCCCAATCCG+CGG + chr7_1:9304552-9304571 None:intergenic 45.0%
TAATCCGCGATTGACAGGTT+AGG + chr7_1:9304677-9304696 None:intergenic 45.0%
TTACGTAATCCGCGATTGAC+AGG + chr7_1:9304682-9304701 None:intergenic 45.0%
!! TGGTTTGTTCAAACTCCGCT+AGG - chr7_1:9304707-9304726 Msa1008720:intron 45.0%
GTTTGAGCAATGGCGTTCTT+TGG - chr7_1:9305344-9305363 Msa1008720:intron 45.0%
TGTGCTTGACAGCAGAATTC+TGG + chr7_1:9305388-9305407 None:intergenic 45.0%
TGCTGTCAAGCACATCAATC+AGG - chr7_1:9305394-9305413 Msa1008720:intron 45.0%
!! CGAGAAGCTTTTTCTCGCTA+TGG - chr7_1:9305595-9305614 Msa1008720:intron 45.0%
CGCTATGGAGAAGTTCTTGA+TGG - chr7_1:9305610-9305629 Msa1008720:intron 45.0%
GCACAATCACAATACTCTGG+GGG + chr7_1:9305805-9305824 None:intergenic 45.0%
CGCACAATCACAATACTCTG+GGG + chr7_1:9305806-9305825 None:intergenic 45.0%
ATGTCCCCTGGTGCAAATTT+GGG + chr7_1:9305861-9305880 None:intergenic 45.0%
TGTCAGTAAATGATGTCCCC+TGG + chr7_1:9305873-9305892 None:intergenic 45.0%
ATCCAACTCTGATCGTCAAC+CGG + chr7_1:9306052-9306071 None:intergenic 45.0%
CGCTTAACTGTGATACTTGG+AGG - chr7_1:9306196-9306215 Msa1008720:intron 45.0%
CATAACTTTCGCAACTAGCG+AGG - chr7_1:9306456-9306475 Msa1008720:CDS 45.0%
TGACAATTATTGTGGCACGG+AGG - chr7_1:9307100-9307119 Msa1008720:intron 45.0%
GACAATTATTGTGGCACGGA+GGG - chr7_1:9307101-9307120 Msa1008720:intron 45.0%
TGGTTGTCACAGGAACTTCA+TGG - chr7_1:9307292-9307311 Msa1008720:intron 45.0%
TGTCACAGGAACTTCATGGT+CGG - chr7_1:9307296-9307315 Msa1008720:intron 45.0%
!! TATGGTGGTGGTGGTACATA+TGG - chr7_1:9307514-9307533 Msa1008720:intron 45.0%
! AGTAGTGGAAGCTATGCAAG+TGG - chr7_1:9307553-9307572 Msa1008720:intron 45.0%
GATCATTGTTCTCTGGCACA+TGG + chr7_1:9307732-9307751 None:intergenic 45.0%
TAGTGTTGTCAACCGCGGAT+TGG - chr7_1:9304537-9304556 Msa1008720:CDS 50.0%
AGTGTTGTCAACCGCGGATT+GGG - chr7_1:9304538-9304557 Msa1008720:CDS 50.0%
CAATGCACAATCTCGCCTAG+CGG + chr7_1:9304725-9304744 None:intergenic 50.0%
! CCTGGTGCAAATTTGGGATG+GGG + chr7_1:9305855-9305874 None:intergenic 50.0%
! CCCTGGTGCAAATTTGGGAT+GGG + chr7_1:9305856-9305875 None:intergenic 50.0%
CCCATCCCAAATTTGCACCA+GGG - chr7_1:9305853-9305872 Msa1008720:intron 50.0%
CCATCCCAAATTTGCACCAG+GGG - chr7_1:9305854-9305873 Msa1008720:intron 50.0%
GATGTCCCCTGGTGCAAATT+TGG + chr7_1:9305862-9305881 None:intergenic 50.0%
TCATGGATCGTGAAACAGGC+AGG - chr7_1:9306416-9306435 Msa1008720:intron 50.0%
! CTGGTTATCCATGGCTTGCA+GGG + chr7_1:9306494-9306513 None:intergenic 50.0%
!! TTTGGTGGTGGTGGTGGTTA+TGG - chr7_1:9307361-9307380 Msa1008720:intron 50.0%
!! AGTGGCGGTGGTGGAAATTA+TGG - chr7_1:9307439-9307458 Msa1008720:intron 50.0%
!! GGTGGTGGAAATTATGGTGG+CGG - chr7_1:9307445-9307464 Msa1008720:intron 50.0%
!! AATTATGGTGGCGGTGGCTA+TGG - chr7_1:9307454-9307473 Msa1008720:intron 50.0%
!! GGAAATTATGGTGGTGGTGG+CGG - chr7_1:9307487-9307506 Msa1008720:intron 50.0%
AGTGGAAGCTATGCAAGTGG+TGG - chr7_1:9307556-9307575 Msa1008720:intron 50.0%
AGCTATACTGGTGGCCATGT+CGG - chr7_1:9307589-9307608 Msa1008720:intron 50.0%
CTGCATAAGTAGTCCCGACA+TGG + chr7_1:9307606-9307625 None:intergenic 50.0%
! TTTGGGATATGGTAGCCACC+AGG - chr7_1:9307654-9307673 Msa1008720:intron 50.0%
TATGGTAGCCACCAGGATGA+CGG - chr7_1:9307661-9307680 Msa1008720:intron 50.0%
CTTCTCCTATTCCGTCATCC+TGG + chr7_1:9307675-9307694 None:intergenic 50.0%
!! CAGGATGACGGAATAGGAGA+AGG - chr7_1:9307673-9307692 Msa1008720:intron 50.0%
ATGACTATGCTGAGACCCGT+AGG - chr7_1:9307758-9307777 Msa1008720:five_prime_UTR 50.0%
CCCCATCCCAAATTTGCACC+AGG - chr7_1:9305852-9305871 Msa1008720:intron 55.0%
CCCCTGGTGCAAATTTGGGA+TGG + chr7_1:9305857-9305876 None:intergenic 55.0%
GTCCGGTTGACGATCAGAGT+TGG - chr7_1:9306047-9306066 Msa1008720:intron 55.0%
! CCTGGTTATCCATGGCTTGC+AGG + chr7_1:9306495-9306514 None:intergenic 55.0%
CCTGCAAGCCATGGATAACC+AGG - chr7_1:9306492-9306511 Msa1008720:CDS 55.0%
! GAAAGGGCACGTCCTGGATT+TGG - chr7_1:9307343-9307362 Msa1008720:intron 55.0%
!! GGCGGTGGTGGAAATTATGG+TGG - chr7_1:9307442-9307461 Msa1008720:intron 55.0%
!! GGTGGAAATTATGGTGGCGG+TGG - chr7_1:9307448-9307467 Msa1008720:intron 55.0%
!! GGTGGTGGTGGCGGAAATTA+TGG - chr7_1:9307475-9307494 Msa1008720:intron 55.0%
!! GGTGGTGGCGGAAATTATGG+TGG - chr7_1:9307478-9307497 Msa1008720:intron 55.0%
!! GGTGGCGGAAATTATGGTGG+TGG - chr7_1:9307481-9307500 Msa1008720:intron 55.0%
!! GGCGGAAATTATGGTGGTGG+TGG - chr7_1:9307484-9307503 Msa1008720:intron 55.0%
!! GGTGGTGGTGGCGGAAATTA+TGG - chr7_1:9307475-9307494 Msa1008720:intron 55.0%
!! GGTGGTGGCGGAAATTATGG+TGG - chr7_1:9307478-9307497 Msa1008720:intron 55.0%
!! GGTGGCGGAAATTATGGTGG+TGG - chr7_1:9307481-9307500 Msa1008720:intron 55.0%
!! GGCGGAAATTATGGTGGTGG+TGG - chr7_1:9307484-9307503 Msa1008720:intron 55.0%
GCCACCAGTATAGCTGTCTG+GGG + chr7_1:9307584-9307603 None:intergenic 55.0%
GGCCACCAGTATAGCTGTCT+GGG + chr7_1:9307585-9307604 None:intergenic 55.0%
TGGCCACCAGTATAGCTGTC+TGG + chr7_1:9307586-9307605 None:intergenic 55.0%
GCTATACTGGTGGCCATGTC+GGG - chr7_1:9307590-9307609 Msa1008720:intron 55.0%
GTCGGGACTACTTATGCAGC+TGG - chr7_1:9307607-9307626 Msa1008720:intron 55.0%
GGGACTACTTATGCAGCTGG+TGG - chr7_1:9307610-9307629 Msa1008720:intron 55.0%
!! AGCCACCAGGATGACGGAAT+AGG - chr7_1:9307667-9307686 Msa1008720:intron 55.0%
CTCCTATTCCGTCATCCTGG+TGG + chr7_1:9307672-9307691 None:intergenic 55.0%
! ACAGGCAGGTCCCGAGGTTT+TGG - chr7_1:9306430-9306449 Msa1008720:CDS 60.0%
ATCCTCTGCCCTGCAAGCCA+TGG - chr7_1:9306483-9306502 Msa1008720:CDS 60.0%
! ATCCATGGCTTGCAGGGCAG+AGG + chr7_1:9306488-9306507 None:intergenic 60.0%
! GCTACAGAAAGGGCACGTCC+TGG - chr7_1:9307337-9307356 Msa1008720:intron 60.0%
AGGGCACGTCCTGGATTTGG+TGG - chr7_1:9307346-9307365 Msa1008720:intron 60.0%
!! GCACGTCCTGGATTTGGTGG+TGG - chr7_1:9307349-9307368 Msa1008720:intron 60.0%
!! CGTCCTGGATTTGGTGGTGG+TGG - chr7_1:9307352-9307371 Msa1008720:intron 60.0%
CCACCACCACCACCAAATCC+AGG + chr7_1:9307358-9307377 None:intergenic 60.0%
!! CCTGGATTTGGTGGTGGTGG+TGG - chr7_1:9307355-9307374 Msa1008720:intron 60.0%
!! GGTGGTGGTGGTGGTTATGG+CGG - chr7_1:9307364-9307383 Msa1008720:intron 60.0%
!! TATGGTGGCGGTGGCTATGG+TGG - chr7_1:9307457-9307476 Msa1008720:intron 60.0%
GGTGCCCCAGACAGCTATAC+TGG - chr7_1:9307577-9307596 Msa1008720:intron 60.0%
GCCCCAGACAGCTATACTGG+TGG - chr7_1:9307580-9307599 Msa1008720:intron 60.0%
CGTGAAACAGGCAGGTCCCG+AGG - chr7_1:9306424-9306443 Msa1008720:intron 65.0%
!! GGTGGTGGTGGTTATGGCGG+CGG - chr7_1:9307367-9307386 Msa1008720:intron 65.0%
GGTTATGGCGGCGGTGGCTA+TGG - chr7_1:9307376-9307395 Msa1008720:intron 65.0%
TATGGCGGCGGTGGCTATGG+CGG - chr7_1:9307379-9307398 Msa1008720:intron 65.0%
!! GGTGGTGGCGGTGGCTATAG+TGG - chr7_1:9307421-9307440 Msa1008720:intron 65.0%
! GGTGGCGGTGGCTATAGTGG+CGG - chr7_1:9307424-9307443 Msa1008720:intron 65.0%
GGTGGCTATAGTGGCGGTGG+TGG - chr7_1:9307430-9307449 Msa1008720:intron 65.0%
!! GGTGGCTATGGTGGTGGTGG+CGG - chr7_1:9307466-9307485 Msa1008720:intron 65.0%
! GGTGGTGGTTATGGCGGCGG+TGG - chr7_1:9307370-9307389 Msa1008720:intron 70.0%
! GGTGGCTATGGCGGTGGTGG+CGG - chr7_1:9307388-9307407 Msa1008720:intron 70.0%
GGCGGTGGCTATAGTGGCGG+TGG - chr7_1:9307427-9307446 Msa1008720:intron 70.0%
! GGTGGCGGTGGCTATGGTGG+TGG - chr7_1:9307460-9307479 Msa1008720:intron 70.0%
!! GGCGGTGGCTATGGTGGTGG+TGG - chr7_1:9307463-9307482 Msa1008720:intron 70.0%
GGCGGTGGCTATGGCGGTGG+TGG - chr7_1:9307385-9307404 Msa1008720:intron 75.0%
!! GGCTATGGCGGTGGTGGCGG+CGG - chr7_1:9307391-9307410 Msa1008720:intron 75.0%
!! GGTGGTGGCGGCGGCTATGG+CGG - chr7_1:9307400-9307419 Msa1008720:intron 75.0%
! GGCGGCTATGGCGGTGGTGG+CGG - chr7_1:9307409-9307428 Msa1008720:intron 75.0%
!! GGCTATGGCGGTGGTGGCGG+TGG - chr7_1:9307391-9307410 Msa1008720:intron 75.0%
! GGCGGCGGTGGCTATGGCGG+TGG - chr7_1:9307382-9307401 Msa1008720:intron 80.0%
!!! GGCGGTGGTGGCGGCGGCTA+TGG - chr7_1:9307397-9307416 Msa1008720:intron 80.0%
!! GGTGGCGGCGGCTATGGCGG+TGG - chr7_1:9307403-9307422 Msa1008720:intron 80.0%
! GGCGGCGGCTATGGCGGTGG+TGG - chr7_1:9307406-9307425 Msa1008720:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 9304135 9307783 9304135 ID=Msa1008720;Name=Msa1008720
chr7_1 mRNA 9304135 9307783 9304135 ID=Msa1008720-mRNA-1;Parent=Msa1008720;Name=Msa1008720-mRNA-1;_AED=0.36;_eAED=0.36;_QI=54|1|0.8|1|0.75|0.6|5|0|263
chr7_1 exon 9304135 9304614 9304135 ID=Msa1008720-mRNA-1:exon:2669;Parent=Msa1008720-mRNA-1
chr7_1 exon 9305405 9305511 9305405 ID=Msa1008720-mRNA-1:exon:2668;Parent=Msa1008720-mRNA-1
chr7_1 exon 9306287 9306355 9306287 ID=Msa1008720-mRNA-1:exon:2667;Parent=Msa1008720-mRNA-1
chr7_1 exon 9306430 9306574 9306430 ID=Msa1008720-mRNA-1:exon:2666;Parent=Msa1008720-mRNA-1
chr7_1 exon 9307739 9307783 9307739 ID=Msa1008720-mRNA-1:exon:2665;Parent=Msa1008720-mRNA-1
chr7_1 five_prime_UTR 9307739 9307783 9307739 ID=Msa1008720-mRNA-1:five_prime_utr;Parent=Msa1008720-mRNA-1
chr7_1 five_prime_UTR 9306566 9306574 9306566 ID=Msa1008720-mRNA-1:five_prime_utr;Parent=Msa1008720-mRNA-1
chr7_1 CDS 9306430 9306565 9306430 ID=Msa1008720-mRNA-1:cds;Parent=Msa1008720-mRNA-1
chr7_1 CDS 9306287 9306355 9306287 ID=Msa1008720-mRNA-1:cds;Parent=Msa1008720-mRNA-1
chr7_1 CDS 9305405 9305511 9305405 ID=Msa1008720-mRNA-1:cds;Parent=Msa1008720-mRNA-1
chr7_1 CDS 9304135 9304614 9304135 ID=Msa1008720-mRNA-1:cds;Parent=Msa1008720-mRNA-1
Gene Sequence

>Msa1008720

ATGGCGTTCTTTGGTAAAATGGGAAAGTTACTCCAGAATTCTGCTGTCAAGCACATCAATCAGGATTTATCTATGTCTACTCCTTCGTTATTTCAAGCAATCAGATCCATGTCATCTGCCAAGCTTTTTATTGGAGGTGTTTCATATAGCACTGATGATAGTAGTCTCCGAGAAGCTTTTTCTCGCTATGGAGAAGTTCTTGATGCAAAGATTATCATGGATCGTGAAACAGGCAGGTCCCGAGGTTTTGGCTTCATAACTTTCGCAACTAGCGAGGAAGCATCCTCTGCCCTGCAAGCCATGGATAACCAGGAACTTCATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGGCACGTCCTGGATTTGGTGGTGGTGGTGGTTATGGCGGCGGTGGCTATGGCGGTGGTGGCGGCGGCTATGGCGGTGGTGGCGGTGGCTATAGTGGCGGTGGTGGAAATTATGGTGGCGGTGGCTATGGTGGTGGTGGCGGAAATTATGGTGGTGGTGGCGGAAATTATGGTGGTGGTGGTACATATGGTCGCAATGATTATAACAGTAGTGGAAGCTATGCAAGTGGTGGTGCCCCAGACAGCTATACTGGTGGCCATGTCGGGACTACTTATGCAGCTGGTGGTGAATTCAGCAGCAACTCTAATTTGGGATATGGTAGCCACCAGGATGACGGAATAGGAGAAGGTAAGAATGAATTCGGTGAGCCGTTAGATAACAACCATGTGCCAGAGAACAATGATCAATCTGATGACTATGCTGAGACCCGTAGGTGA
Protein sequence

>Msa1008720

MAFFGKMGKLLQNSAVKHINQDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDDSSLREAFSRYGEVLDAKIIMDRETGRSRGFGFITFATSEEASSALQAMDNQELHGRTVRVNYATERARPGFGGGGGYGGGGYGGGGGGYGGGGGGYSGGGGNYGGGGYGGGGGNYGGGGGNYGGGGTYGRNDYNSSGSYASGGAPDSYTGGHVGTTYAAGGEFSSNSNLGYGSHQDDGIGEGKNEFGEPLDNNHVPENNDQSDDYAETRR*