AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072710 MtrunA17_Chr7g0255421 99.507 203 1 0 1 203 1 203 6.19e-146 404
Msa1072710 MtrunA17_Chr3g0128041 72.185 151 36 2 59 203 77 227 1.17e-67 206
Msa1072710 MtrunA17_Chr3g0128051 69.333 150 41 2 59 203 69 218 6.90e-59 184
Msa1072710 MtrunA17_Chr3g0128591 56.303 119 41 3 87 203 390 499 4.94e-30 115
Msa1072710 MtrunA17_Chr3g0128571 78.571 42 9 0 161 202 21 62 2.42e-15 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072710 AT3G12390.1 72.500 200 52 2 6 203 5 203 2.11e-77 231
Msa1072710 AT5G13850.1 70.000 210 50 3 1 203 1 204 2.44e-75 226
Msa1072710 AT3G49470.1 62.000 200 64 4 10 203 24 217 2.76e-67 206
Msa1072710 AT3G49470.2 61.622 185 60 3 16 194 29 208 1.56e-61 191
Msa1072710 AT4G10480.2 61.951 205 65 3 6 202 11 210 4.95e-61 189
Msa1072710 AT4G10480.1 69.737 152 36 2 59 202 62 211 9.10e-61 189
Msa1072710 AT1G33040.1 64.238 151 48 2 59 203 59 209 7.61e-59 184

Find 60 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTAGTACTTTAGATTT+TGG 0.129061 7_2:+69893263 Msa1072710:three_prime_UTR
AATTGTTCTTTATCACTCTT+AGG 0.277741 7_2:+69893553 Msa1072710:three_prime_UTR
TCTGACACCTACATTATATT+CGG 0.304764 7_2:+69892967 Msa1072710:CDS
TCGTCTACATCCTCATCTTC+TGG 0.324398 7_2:-69893102 None:intergenic
GCACCCGCATTGGTCAAATT+AGG 0.324435 7_2:-69893054 None:intergenic
GAGCAGCAAGAAGCTCTTCT+TGG 0.330866 7_2:-69891353 None:intergenic
CAAGAAGCTCTTCTTGGGTT+CGG 0.345174 7_2:-69891347 None:intergenic
GGAGCAATACCAGAGGATTC+TGG 0.349709 7_2:-69893081 None:intergenic
TCGCCAAAGGATTTGAAAAC+AGG 0.355884 7_2:-69893608 None:intergenic
GCTTTAACAGCTCTTGATCT+TGG 0.356165 7_2:-69893177 None:intergenic
AGACATTGTTGCTGCCATTA+TGG 0.359211 7_2:+69893218 Msa1072710:CDS
CTTGGAATGAAAGCTGTTAC+TGG 0.368859 7_2:+69892767 Msa1072710:CDS
TCTTGTTGGGTTTGAAATAG+TGG 0.369516 7_2:+69893329 Msa1072710:three_prime_UTR
GTTGGACTCTTGAAAACATC+TGG 0.370830 7_2:-69892943 None:intergenic
TTTCGTTTGTGTGTTGTGTT+TGG 0.375646 7_2:+69891269 None:intergenic
AACAAATTAATGCTCAGAAT+TGG 0.398318 7_2:+69893245 Msa1072710:exon
AAGAAGCTCTTCTTGGGTTC+GGG 0.408224 7_2:-69891346 None:intergenic
CTATGATCCACTGTCATTCT+CGG 0.408865 7_2:-69893457 None:intergenic
CGCAAGGCAATGCTTAAACT+TGG 0.418058 7_2:+69892749 Msa1072710:CDS
CTGACACCTACATTATATTC+GGG 0.423367 7_2:+69892968 Msa1072710:CDS
TTAATTTGTTAGCTCCATAA+TGG 0.425574 7_2:-69893232 None:intergenic
TCCACTGTCATTCTCGGCAT+TGG 0.427979 7_2:-69893451 None:intergenic
TTCTTGGGTTCGGGCAGTCA+TGG 0.436661 7_2:-69891337 None:intergenic
CACCACCAACTCAATATCCT+TGG 0.437037 7_2:-69893139 None:intergenic
GTTCTTTATCACTCTTAGGT+TGG 0.450180 7_2:+69893557 Msa1072710:three_prime_UTR
AGCAGCAAGAAGCTCTTCTT+GGG 0.455992 7_2:-69891352 None:intergenic
TTCTGGTTTCGCACCCGCAT+TGG 0.470492 7_2:-69893064 None:intergenic
TCAGGCTGCAGAGCAGTTCA+AGG 0.470685 7_2:+69893029 Msa1072710:CDS
TATAGAACACAGCAAAGGTC+TGG 0.483527 7_2:-69893491 None:intergenic
TCCCAAGGATATTGAGTTGG+TGG 0.515624 7_2:+69893137 Msa1072710:CDS
GCTCCTAATTTGACCAATGC+GGG 0.519514 7_2:+69893051 Msa1072710:CDS
ATAATGTAGGTGTCAGAAGT+TGG 0.520697 7_2:-69892961 None:intergenic
TCATCGTCATCCTCAACTAC+AGG 0.523575 7_2:-69891969 None:intergenic
ACCACCAACTCAATATCCTT+GGG 0.531886 7_2:-69893138 None:intergenic
GATGAGGATGTAGACGAGAC+TGG 0.538671 7_2:+69893108 Msa1072710:CDS
GGATTTGAAGGTGATGCATC+TGG 0.544074 7_2:+69892692 Msa1072710:intron
GGCAGCAACAATGTCTCCAT+TGG 0.548006 7_2:-69893211 None:intergenic
GAGTTGGTGGTGACTCAAGC+TGG 0.556994 7_2:+69893150 Msa1072710:CDS
AAGACATAGCCACGCAATGA+AGG 0.561527 7_2:-69893517 None:intergenic
GGTGCGAAACCAGAATCCTC+TGG 0.566739 7_2:+69893072 Msa1072710:CDS
TGACGAAGACGACGATGATG+AGG 0.584480 7_2:+69892007 Msa1072710:CDS
GCATGATGAGCCTGTAGTTG+AGG 0.588135 7_2:+69891959 Msa1072710:intron
AAAGCTCTCAAAGCTGCCAA+TGG 0.592851 7_2:+69893195 Msa1072710:CDS
GAGCTCACAGCTACAAACTC+AGG 0.597975 7_2:+69893011 Msa1072710:CDS
CGAGACTGGTGTAGATCCCA+AGG 0.607645 7_2:+69893122 Msa1072710:CDS
TGGTATTGCTCCAGAAGATG+AGG 0.607813 7_2:+69893092 Msa1072710:CDS
AGCTTCCCCGAATATAATGT+AGG 0.614771 7_2:-69892974 None:intergenic
TCTATATTACCTTCATTGCG+TGG 0.615723 7_2:+69893508 Msa1072710:three_prime_UTR
AGATCCCAAGGATATTGAGT+TGG 0.629225 7_2:+69893134 Msa1072710:CDS
TCCAATGCCGAGAATGACAG+TGG 0.630307 7_2:+69893450 Msa1072710:three_prime_UTR
TTGAAGGTGATGCATCTGGT+AGG 0.643359 7_2:+69892696 Msa1072710:CDS
GGCTCCTAATTTGACCAATG+CGG 0.643666 7_2:+69893050 Msa1072710:CDS
AAGTGAAAAGAAGAGTCGCA+AGG 0.645070 7_2:+69892733 Msa1072710:CDS
GGTAATATAGAACACAGCAA+AGG 0.652612 7_2:-69893496 None:intergenic
ATCTTCTGGAGCAATACCAG+AGG 0.670950 7_2:-69893088 None:intergenic
CAGAAAATAGAACAAAGCAA+AGG 0.671441 7_2:-69893366 None:intergenic
TGACACCTACATTATATTCG+GGG 0.682224 7_2:+69892969 Msa1072710:CDS
TGACGATGATGAGGACGATG+AGG 0.719627 7_2:+69891983 Msa1072710:CDS
AGTTGAGGATGACGATGATG+AGG 0.722265 7_2:+69891974 Msa1072710:CDS
GAGGACGATGACAATGCTGA+AGG 0.723088 7_2:+69892026 Msa1072710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATAATAAATTGG+AGG - chr7_2:69891424-69891443 None:intergenic 10.0%
!! AAAAAAAAATAATAAATTGG+AGG - chr7_2:69891424-69891443 None:intergenic 10.0%
!!! TTTTTTTTTAGTTCAGTTTT+TGG + chr7_2:69891436-69891455 Msa1072710:intron 15.0%
!!! TTTATGTATGAAATGTTTTA+GGG + chr7_2:69891518-69891537 Msa1072710:intron 15.0%
!! TGTTACAATGAAAAAAAAAA+TGG + chr7_2:69891691-69891710 Msa1072710:intron 15.0%
!!! TTTTTTTTTAGTTCAGTTTT+TGG + chr7_2:69891436-69891455 Msa1072710:intron 15.0%
!!! TTTATGTATGAAATGTTTTA+GGG + chr7_2:69891518-69891537 Msa1072710:intron 15.0%
!! TGTTACAATGAAAAAAAAAA+TGG + chr7_2:69891691-69891710 Msa1072710:intron 15.0%
!!! AAAAAGAGAAGTTGATTTTT+GGG - chr7_2:69891309-69891328 None:intergenic 20.0%
!!! CTTTATGTATGAAATGTTTT+AGG + chr7_2:69891517-69891536 Msa1072710:intron 20.0%
!!! ATTTACATGTTTTTGAAATC+AGG + chr7_2:69891602-69891621 Msa1072710:intron 20.0%
!!! TTTACATGTTTTTGAAATCA+GGG + chr7_2:69891603-69891622 Msa1072710:intron 20.0%
!!! GGTTTTATGAATAAATTGAA+AGG + chr7_2:69891652-69891671 Msa1072710:intron 20.0%
!! TTCTTGTAGTAAATTGTAAT+TGG + chr7_2:69891781-69891800 Msa1072710:intron 20.0%
!! TTGTTCTACAAAATTTCAAA+TGG + chr7_2:69892204-69892223 Msa1072710:intron 20.0%
!! TGTTCTACAAAATTTCAAAT+GGG + chr7_2:69892205-69892224 Msa1072710:intron 20.0%
!! TTCATTTAAAAGTTCATCAT+TGG + chr7_2:69892294-69892313 Msa1072710:intron 20.0%
!!! TTTTTTTCTTTTTCTATTGC+AGG + chr7_2:69892671-69892690 Msa1072710:intron 20.0%
!!! TTTTTCTGTTGTATCAATAT+TGG + chr7_2:69892857-69892876 Msa1072710:intron 20.0%
!!! AAAAAGAGAAGTTGATTTTT+GGG - chr7_2:69891309-69891328 None:intergenic 20.0%
!!! CTTTATGTATGAAATGTTTT+AGG + chr7_2:69891517-69891536 Msa1072710:intron 20.0%
!!! ATTTACATGTTTTTGAAATC+AGG + chr7_2:69891602-69891621 Msa1072710:intron 20.0%
!!! TTTACATGTTTTTGAAATCA+GGG + chr7_2:69891603-69891622 Msa1072710:intron 20.0%
!!! GGTTTTATGAATAAATTGAA+AGG + chr7_2:69891652-69891671 Msa1072710:intron 20.0%
!! TTCTTGTAGTAAATTGTAAT+TGG + chr7_2:69891781-69891800 Msa1072710:intron 20.0%
!! TTGTTCTACAAAATTTCAAA+TGG + chr7_2:69892204-69892223 Msa1072710:intron 20.0%
!! TGTTCTACAAAATTTCAAAT+GGG + chr7_2:69892205-69892224 Msa1072710:intron 20.0%
!! TTCATTTAAAAGTTCATCAT+TGG + chr7_2:69892294-69892313 Msa1072710:intron 20.0%
!!! TTTTTTTCTTTTTCTATTGC+AGG + chr7_2:69892671-69892690 Msa1072710:intron 20.0%
!!! TTTTTCTGTTGTATCAATAT+TGG + chr7_2:69892857-69892876 Msa1072710:intron 20.0%
!!! AAAAGAGAAGTTGATTTTTG+GGG - chr7_2:69891308-69891327 None:intergenic 25.0%
!!! GAAAAAGAGAAGTTGATTTT+TGG - chr7_2:69891310-69891329 None:intergenic 25.0%
!! TAGTTTGATTTCCAAGTAAT+TGG + chr7_2:69891466-69891485 Msa1072710:intron 25.0%
! CAAAAACTAAACCAATTACT+TGG - chr7_2:69891480-69891499 None:intergenic 25.0%
!!! GGTTTAGTTTTTGATGTTTT+TGG + chr7_2:69891487-69891506 Msa1072710:intron 25.0%
! TACTGTGTATGAAATGATTT+AGG + chr7_2:69891550-69891569 Msa1072710:intron 25.0%
! ACTGTGTATGAAATGATTTA+GGG + chr7_2:69891551-69891570 Msa1072710:intron 25.0%
! TTATTCATAAAACCATGACA+TGG - chr7_2:69891646-69891665 None:intergenic 25.0%
!! TACAGATGAATTTGTTCTTA+TGG + chr7_2:69891836-69891855 Msa1072710:intron 25.0%
! TTGTAAACTTATAAGTGTAG+TGG + chr7_2:69891873-69891892 Msa1072710:intron 25.0%
! ATAGCATTCATTGAGTAATT+TGG + chr7_2:69892122-69892141 Msa1072710:intron 25.0%
! CAACAAAGTGAATTAATGTA+CGG + chr7_2:69892157-69892176 Msa1072710:intron 25.0%
! TTTGTATTTAGTGTATGTTG+AGG + chr7_2:69892434-69892453 Msa1072710:intron 25.0%
! TTGTATTTAGTGTATGTTGA+GGG + chr7_2:69892435-69892454 Msa1072710:intron 25.0%
!!! TTGTTTTTTTGCATGAACTA+AGG + chr7_2:69892625-69892644 Msa1072710:intron 25.0%
!!! TTAATTTGTTAGCTCCATAA+TGG - chr7_2:69893235-69893254 None:intergenic 25.0%
! AACAAATTAATGCTCAGAAT+TGG + chr7_2:69893245-69893264 Msa1072710:exon 25.0%
!!! ATTGGTAGTACTTTAGATTT+TGG + chr7_2:69893263-69893282 Msa1072710:three_prime_UTR 25.0%
!!! TTTTTTTTTGTTGCTCTTGT+TGG + chr7_2:69893315-69893334 Msa1072710:three_prime_UTR 25.0%
!!! TTTTTTTTGTTGCTCTTGTT+GGG + chr7_2:69893316-69893335 Msa1072710:three_prime_UTR 25.0%
! AATTGTTCTTTATCACTCTT+AGG + chr7_2:69893553-69893572 Msa1072710:three_prime_UTR 25.0%
!!! AAAAGAGAAGTTGATTTTTG+GGG - chr7_2:69891308-69891327 None:intergenic 25.0%
!!! GAAAAAGAGAAGTTGATTTT+TGG - chr7_2:69891310-69891329 None:intergenic 25.0%
!! TAGTTTGATTTCCAAGTAAT+TGG + chr7_2:69891466-69891485 Msa1072710:intron 25.0%
! CAAAAACTAAACCAATTACT+TGG - chr7_2:69891480-69891499 None:intergenic 25.0%
!!! GGTTTAGTTTTTGATGTTTT+TGG + chr7_2:69891487-69891506 Msa1072710:intron 25.0%
! TACTGTGTATGAAATGATTT+AGG + chr7_2:69891550-69891569 Msa1072710:intron 25.0%
! ACTGTGTATGAAATGATTTA+GGG + chr7_2:69891551-69891570 Msa1072710:intron 25.0%
! TTATTCATAAAACCATGACA+TGG - chr7_2:69891646-69891665 None:intergenic 25.0%
!! TACAGATGAATTTGTTCTTA+TGG + chr7_2:69891836-69891855 Msa1072710:intron 25.0%
! TTGTAAACTTATAAGTGTAG+TGG + chr7_2:69891873-69891892 Msa1072710:intron 25.0%
! ATAGCATTCATTGAGTAATT+TGG + chr7_2:69892122-69892141 Msa1072710:intron 25.0%
! CAACAAAGTGAATTAATGTA+CGG + chr7_2:69892157-69892176 Msa1072710:intron 25.0%
! TTTGTATTTAGTGTATGTTG+AGG + chr7_2:69892434-69892453 Msa1072710:intron 25.0%
! TTGTATTTAGTGTATGTTGA+GGG + chr7_2:69892435-69892454 Msa1072710:intron 25.0%
!!! TTGTTTTTTTGCATGAACTA+AGG + chr7_2:69892625-69892644 Msa1072710:intron 25.0%
!!! TTAATTTGTTAGCTCCATAA+TGG - chr7_2:69893235-69893254 None:intergenic 25.0%
! AACAAATTAATGCTCAGAAT+TGG + chr7_2:69893245-69893264 Msa1072710:exon 25.0%
!!! ATTGGTAGTACTTTAGATTT+TGG + chr7_2:69893263-69893282 Msa1072710:three_prime_UTR 25.0%
!!! TTTTTTTTTGTTGCTCTTGT+TGG + chr7_2:69893315-69893334 Msa1072710:three_prime_UTR 25.0%
!!! TTTTTTTTGTTGCTCTTGTT+GGG + chr7_2:69893316-69893335 Msa1072710:three_prime_UTR 25.0%
! AATTGTTCTTTATCACTCTT+AGG + chr7_2:69893553-69893572 Msa1072710:three_prime_UTR 25.0%
!!! GTTTTTGAAATCAGGGTTTT+TGG + chr7_2:69891610-69891629 Msa1072710:intron 30.0%
ATGTATCTGTGTATCTATAG+AGG + chr7_2:69891745-69891764 Msa1072710:intron 30.0%
CATTCATTGAGTAATTTGGT+AGG + chr7_2:69892126-69892145 Msa1072710:intron 30.0%
TTGAGGGTTTAACAAAATCA+CGG + chr7_2:69892451-69892470 Msa1072710:intron 30.0%
ACTGTCATAAATATTGTGTG+TGG + chr7_2:69892509-69892528 Msa1072710:intron 30.0%
!!! CATGTATTTTGGTTGTATTC+TGG - chr7_2:69892560-69892579 None:intergenic 30.0%
! CTGACATTGTACATGTATTT+TGG - chr7_2:69892571-69892590 None:intergenic 30.0%
CAAAATACATGTACAATGTC+AGG + chr7_2:69892569-69892588 Msa1072710:intron 30.0%
! TTTTCTATTGCAGGATTTGA+AGG + chr7_2:69892680-69892699 Msa1072710:intron 30.0%
TCTGACACCTACATTATATT+CGG + chr7_2:69892967-69892986 Msa1072710:CDS 30.0%
CAGAAAATAGAACAAAGCAA+AGG - chr7_2:69893369-69893388 None:intergenic 30.0%
! AAACCTGTTTTCAAATCCTT+TGG + chr7_2:69893605-69893624 Msa1072710:three_prime_UTR 30.0%
!!! GTTTTTGAAATCAGGGTTTT+TGG + chr7_2:69891610-69891629 Msa1072710:intron 30.0%
ATGTATCTGTGTATCTATAG+AGG + chr7_2:69891745-69891764 Msa1072710:intron 30.0%
CATTCATTGAGTAATTTGGT+AGG + chr7_2:69892126-69892145 Msa1072710:intron 30.0%
TTGAGGGTTTAACAAAATCA+CGG + chr7_2:69892451-69892470 Msa1072710:intron 30.0%
ACTGTCATAAATATTGTGTG+TGG + chr7_2:69892509-69892528 Msa1072710:intron 30.0%
!!! CATGTATTTTGGTTGTATTC+TGG - chr7_2:69892560-69892579 None:intergenic 30.0%
! CTGACATTGTACATGTATTT+TGG - chr7_2:69892571-69892590 None:intergenic 30.0%
CAAAATACATGTACAATGTC+AGG + chr7_2:69892569-69892588 Msa1072710:intron 30.0%
! TTTTCTATTGCAGGATTTGA+AGG + chr7_2:69892680-69892699 Msa1072710:intron 30.0%
TCTGACACCTACATTATATT+CGG + chr7_2:69892967-69892986 Msa1072710:CDS 30.0%
CAGAAAATAGAACAAAGCAA+AGG - chr7_2:69893369-69893388 None:intergenic 30.0%
! AAACCTGTTTTCAAATCCTT+TGG + chr7_2:69893605-69893624 Msa1072710:three_prime_UTR 30.0%
! AACTTGCCTCATTTTGCATT+TGG + chr7_2:69892086-69892105 Msa1072710:intron 35.0%
TGAGGGTTTAACAAAATCAC+GGG + chr7_2:69892452-69892471 Msa1072710:intron 35.0%
TATTCTGGTACAGACTAATC+TGG - chr7_2:69892545-69892564 None:intergenic 35.0%
ATGAACTAAGGCTACAATGA+TGG + chr7_2:69892637-69892656 Msa1072710:intron 35.0%
ATAATGTAGGTGTCAGAAGT+TGG - chr7_2:69892964-69892983 None:intergenic 35.0%
CTGACACCTACATTATATTC+GGG + chr7_2:69892968-69892987 Msa1072710:CDS 35.0%
TGACACCTACATTATATTCG+GGG + chr7_2:69892969-69892988 Msa1072710:CDS 35.0%
!!! GTGAAGCTATTTTTCTTTGC+TGG + chr7_2:69893289-69893308 Msa1072710:three_prime_UTR 35.0%
! TCTTGTTGGGTTTGAAATAG+TGG + chr7_2:69893329-69893348 Msa1072710:three_prime_UTR 35.0%
GGTAATATAGAACACAGCAA+AGG - chr7_2:69893499-69893518 None:intergenic 35.0%
TCTATATTACCTTCATTGCG+TGG + chr7_2:69893508-69893527 Msa1072710:three_prime_UTR 35.0%
GTTCTTTATCACTCTTAGGT+TGG + chr7_2:69893557-69893576 Msa1072710:three_prime_UTR 35.0%
TCAAATCCTTTGGCGAAAAA+AGG + chr7_2:69893615-69893634 Msa1072710:three_prime_UTR 35.0%
! AACTTGCCTCATTTTGCATT+TGG + chr7_2:69892086-69892105 Msa1072710:intron 35.0%
TGAGGGTTTAACAAAATCAC+GGG + chr7_2:69892452-69892471 Msa1072710:intron 35.0%
TATTCTGGTACAGACTAATC+TGG - chr7_2:69892545-69892564 None:intergenic 35.0%
ATGAACTAAGGCTACAATGA+TGG + chr7_2:69892637-69892656 Msa1072710:intron 35.0%
ATAATGTAGGTGTCAGAAGT+TGG - chr7_2:69892964-69892983 None:intergenic 35.0%
CTGACACCTACATTATATTC+GGG + chr7_2:69892968-69892987 Msa1072710:CDS 35.0%
TGACACCTACATTATATTCG+GGG + chr7_2:69892969-69892988 Msa1072710:CDS 35.0%
!!! GTGAAGCTATTTTTCTTTGC+TGG + chr7_2:69893289-69893308 Msa1072710:three_prime_UTR 35.0%
! TCTTGTTGGGTTTGAAATAG+TGG + chr7_2:69893329-69893348 Msa1072710:three_prime_UTR 35.0%
GGTAATATAGAACACAGCAA+AGG - chr7_2:69893499-69893518 None:intergenic 35.0%
TCTATATTACCTTCATTGCG+TGG + chr7_2:69893508-69893527 Msa1072710:three_prime_UTR 35.0%
GTTCTTTATCACTCTTAGGT+TGG + chr7_2:69893557-69893576 Msa1072710:three_prime_UTR 35.0%
TCAAATCCTTTGGCGAAAAA+AGG + chr7_2:69893615-69893634 Msa1072710:three_prime_UTR 35.0%
!! AGAAGTTGATTTTTGGGGAG+CGG - chr7_2:69891303-69891322 None:intergenic 40.0%
GGATTTGAATGACCATGTCA+TGG + chr7_2:69891631-69891650 Msa1072710:intron 40.0%
CCTTCACCAAATGCAAAATG+AGG - chr7_2:69892095-69892114 None:intergenic 40.0%
!! CCTCATTTTGCATTTGGTGA+AGG + chr7_2:69892092-69892111 Msa1072710:intron 40.0%
TCAAATGGGTGTTTCATCTG+AGG + chr7_2:69892219-69892238 Msa1072710:intron 40.0%
TTGAAAGTCATGCAGAACAG+TGG - chr7_2:69892597-69892616 None:intergenic 40.0%
! CTTTTCACTTCTGGTCTGTT+TGG - chr7_2:69892723-69892742 None:intergenic 40.0%
AAGTGAAAAGAAGAGTCGCA+AGG + chr7_2:69892733-69892752 Msa1072710:CDS 40.0%
CTTGGAATGAAAGCTGTTAC+TGG + chr7_2:69892767-69892786 Msa1072710:CDS 40.0%
ACGAACAAGATCTGATGAAC+AGG - chr7_2:69892913-69892932 None:intergenic 40.0%
GTTGGACTCTTGAAAACATC+TGG - chr7_2:69892946-69892965 None:intergenic 40.0%
AGCTTCCCCGAATATAATGT+AGG - chr7_2:69892977-69892996 None:intergenic 40.0%
AGATCCCAAGGATATTGAGT+TGG + chr7_2:69893134-69893153 Msa1072710:CDS 40.0%
ACCACCAACTCAATATCCTT+GGG - chr7_2:69893141-69893160 None:intergenic 40.0%
GCTTTAACAGCTCTTGATCT+TGG - chr7_2:69893180-69893199 None:intergenic 40.0%
AGACATTGTTGCTGCCATTA+TGG + chr7_2:69893218-69893237 Msa1072710:CDS 40.0%
CTATGATCCACTGTCATTCT+CGG - chr7_2:69893460-69893479 None:intergenic 40.0%
TATAGAACACAGCAAAGGTC+TGG - chr7_2:69893494-69893513 None:intergenic 40.0%
TCGCCAAAGGATTTGAAAAC+AGG - chr7_2:69893611-69893630 None:intergenic 40.0%
!! AGAAGTTGATTTTTGGGGAG+CGG - chr7_2:69891303-69891322 None:intergenic 40.0%
GGATTTGAATGACCATGTCA+TGG + chr7_2:69891631-69891650 Msa1072710:intron 40.0%
CCTTCACCAAATGCAAAATG+AGG - chr7_2:69892095-69892114 None:intergenic 40.0%
!! CCTCATTTTGCATTTGGTGA+AGG + chr7_2:69892092-69892111 Msa1072710:intron 40.0%
TCAAATGGGTGTTTCATCTG+AGG + chr7_2:69892219-69892238 Msa1072710:intron 40.0%
TTGAAAGTCATGCAGAACAG+TGG - chr7_2:69892597-69892616 None:intergenic 40.0%
! CTTTTCACTTCTGGTCTGTT+TGG - chr7_2:69892723-69892742 None:intergenic 40.0%
AAGTGAAAAGAAGAGTCGCA+AGG + chr7_2:69892733-69892752 Msa1072710:CDS 40.0%
CTTGGAATGAAAGCTGTTAC+TGG + chr7_2:69892767-69892786 Msa1072710:CDS 40.0%
ACGAACAAGATCTGATGAAC+AGG - chr7_2:69892913-69892932 None:intergenic 40.0%
GTTGGACTCTTGAAAACATC+TGG - chr7_2:69892946-69892965 None:intergenic 40.0%
AGCTTCCCCGAATATAATGT+AGG - chr7_2:69892977-69892996 None:intergenic 40.0%
AGATCCCAAGGATATTGAGT+TGG + chr7_2:69893134-69893153 Msa1072710:CDS 40.0%
ACCACCAACTCAATATCCTT+GGG - chr7_2:69893141-69893160 None:intergenic 40.0%
GCTTTAACAGCTCTTGATCT+TGG - chr7_2:69893180-69893199 None:intergenic 40.0%
AGACATTGTTGCTGCCATTA+TGG + chr7_2:69893218-69893237 Msa1072710:CDS 40.0%
CTATGATCCACTGTCATTCT+CGG - chr7_2:69893460-69893479 None:intergenic 40.0%
TATAGAACACAGCAAAGGTC+TGG - chr7_2:69893494-69893513 None:intergenic 40.0%
TCGCCAAAGGATTTGAAAAC+AGG - chr7_2:69893611-69893630 None:intergenic 40.0%
AAGAAGCTCTTCTTGGGTTC+GGG - chr7_2:69891349-69891368 None:intergenic 45.0%
CAAGAAGCTCTTCTTGGGTT+CGG - chr7_2:69891350-69891369 None:intergenic 45.0%
AGCAGCAAGAAGCTCTTCTT+GGG - chr7_2:69891355-69891374 None:intergenic 45.0%
TCATCGTCATCCTCAACTAC+AGG - chr7_2:69891972-69891991 None:intergenic 45.0%
AGTTGAGGATGACGATGATG+AGG + chr7_2:69891974-69891993 Msa1072710:CDS 45.0%
AAACCCACTGCGACAAATTG+TGG + chr7_2:69892485-69892504 Msa1072710:intron 45.0%
GTACCACAATTTGTCGCAGT+GGG - chr7_2:69892491-69892510 None:intergenic 45.0%
AGTACCACAATTTGTCGCAG+TGG - chr7_2:69892492-69892511 None:intergenic 45.0%
GGATTTGAAGGTGATGCATC+TGG + chr7_2:69892692-69892711 Msa1072710:intron 45.0%
TTGAAGGTGATGCATCTGGT+AGG + chr7_2:69892696-69892715 Msa1072710:CDS 45.0%
! GCGACTCTTCTTTTCACTTC+TGG - chr7_2:69892732-69892751 None:intergenic 45.0%
CGCAAGGCAATGCTTAAACT+TGG + chr7_2:69892749-69892768 Msa1072710:CDS 45.0%
GGCTCCTAATTTGACCAATG+CGG + chr7_2:69893050-69893069 Msa1072710:CDS 45.0%
GCTCCTAATTTGACCAATGC+GGG + chr7_2:69893051-69893070 Msa1072710:CDS 45.0%
!! ATCTTCTGGAGCAATACCAG+AGG - chr7_2:69893091-69893110 None:intergenic 45.0%
TGGTATTGCTCCAGAAGATG+AGG + chr7_2:69893092-69893111 Msa1072710:CDS 45.0%
TCGTCTACATCCTCATCTTC+TGG - chr7_2:69893105-69893124 None:intergenic 45.0%
!! TCCCAAGGATATTGAGTTGG+TGG + chr7_2:69893137-69893156 Msa1072710:CDS 45.0%
CACCACCAACTCAATATCCT+TGG - chr7_2:69893142-69893161 None:intergenic 45.0%
AAAGCTCTCAAAGCTGCCAA+TGG + chr7_2:69893195-69893214 Msa1072710:CDS 45.0%
AAGACATAGCCACGCAATGA+AGG - chr7_2:69893520-69893539 None:intergenic 45.0%
!!! GCTACACCTTTTTTCGCCAA+AGG - chr7_2:69893624-69893643 None:intergenic 45.0%
AAGAAGCTCTTCTTGGGTTC+GGG - chr7_2:69891349-69891368 None:intergenic 45.0%
CAAGAAGCTCTTCTTGGGTT+CGG - chr7_2:69891350-69891369 None:intergenic 45.0%
AGCAGCAAGAAGCTCTTCTT+GGG - chr7_2:69891355-69891374 None:intergenic 45.0%
TCATCGTCATCCTCAACTAC+AGG - chr7_2:69891972-69891991 None:intergenic 45.0%
AGTTGAGGATGACGATGATG+AGG + chr7_2:69891974-69891993 Msa1072710:CDS 45.0%
AAACCCACTGCGACAAATTG+TGG + chr7_2:69892485-69892504 Msa1072710:intron 45.0%
GTACCACAATTTGTCGCAGT+GGG - chr7_2:69892491-69892510 None:intergenic 45.0%
AGTACCACAATTTGTCGCAG+TGG - chr7_2:69892492-69892511 None:intergenic 45.0%
GGATTTGAAGGTGATGCATC+TGG + chr7_2:69892692-69892711 Msa1072710:intron 45.0%
TTGAAGGTGATGCATCTGGT+AGG + chr7_2:69892696-69892715 Msa1072710:CDS 45.0%
! GCGACTCTTCTTTTCACTTC+TGG - chr7_2:69892732-69892751 None:intergenic 45.0%
CGCAAGGCAATGCTTAAACT+TGG + chr7_2:69892749-69892768 Msa1072710:CDS 45.0%
GGCTCCTAATTTGACCAATG+CGG + chr7_2:69893050-69893069 Msa1072710:CDS 45.0%
GCTCCTAATTTGACCAATGC+GGG + chr7_2:69893051-69893070 Msa1072710:CDS 45.0%
!! ATCTTCTGGAGCAATACCAG+AGG - chr7_2:69893091-69893110 None:intergenic 45.0%
TGGTATTGCTCCAGAAGATG+AGG + chr7_2:69893092-69893111 Msa1072710:CDS 45.0%
TCGTCTACATCCTCATCTTC+TGG - chr7_2:69893105-69893124 None:intergenic 45.0%
!! TCCCAAGGATATTGAGTTGG+TGG + chr7_2:69893137-69893156 Msa1072710:CDS 45.0%
CACCACCAACTCAATATCCT+TGG - chr7_2:69893142-69893161 None:intergenic 45.0%
AAAGCTCTCAAAGCTGCCAA+TGG + chr7_2:69893195-69893214 Msa1072710:CDS 45.0%
AAGACATAGCCACGCAATGA+AGG - chr7_2:69893520-69893539 None:intergenic 45.0%
!!! GCTACACCTTTTTTCGCCAA+AGG - chr7_2:69893624-69893643 None:intergenic 45.0%
!! CTAAAAAAAAAATAATAAAT+TGG - chr7_2:69891427-69891446 None:intergenic 5.0%
!!! TTTAATTAAGAATTTTTTTA+AGG + chr7_2:69893580-69893599 Msa1072710:three_prime_UTR 5.0%
!! CTAAAAAAAAAATAATAAAT+TGG - chr7_2:69891427-69891446 None:intergenic 5.0%
!!! TTTAATTAAGAATTTTTTTA+AGG + chr7_2:69893580-69893599 Msa1072710:three_prime_UTR 5.0%
GAGCAGCAAGAAGCTCTTCT+TGG - chr7_2:69891356-69891375 None:intergenic 50.0%
GCATGATGAGCCTGTAGTTG+AGG + chr7_2:69891959-69891978 Msa1072710:intron 50.0%
TGACGATGATGAGGACGATG+AGG + chr7_2:69891983-69892002 Msa1072710:CDS 50.0%
TGACGAAGACGACGATGATG+AGG + chr7_2:69892007-69892026 Msa1072710:CDS 50.0%
GAGGACGATGACAATGCTGA+AGG + chr7_2:69892026-69892045 Msa1072710:CDS 50.0%
GAGCTCACAGCTACAAACTC+AGG + chr7_2:69893011-69893030 Msa1072710:CDS 50.0%
! GCACCCGCATTGGTCAAATT+AGG - chr7_2:69893057-69893076 None:intergenic 50.0%
GGAGCAATACCAGAGGATTC+TGG - chr7_2:69893084-69893103 None:intergenic 50.0%
GATGAGGATGTAGACGAGAC+TGG + chr7_2:69893108-69893127 Msa1072710:CDS 50.0%
GGCAGCAACAATGTCTCCAT+TGG - chr7_2:69893214-69893233 None:intergenic 50.0%
TCCAATGCCGAGAATGACAG+TGG + chr7_2:69893450-69893469 Msa1072710:three_prime_UTR 50.0%
TCCACTGTCATTCTCGGCAT+TGG - chr7_2:69893454-69893473 None:intergenic 50.0%
GAGCAGCAAGAAGCTCTTCT+TGG - chr7_2:69891356-69891375 None:intergenic 50.0%
GCATGATGAGCCTGTAGTTG+AGG + chr7_2:69891959-69891978 Msa1072710:intron 50.0%
TGACGATGATGAGGACGATG+AGG + chr7_2:69891983-69892002 Msa1072710:CDS 50.0%
TGACGAAGACGACGATGATG+AGG + chr7_2:69892007-69892026 Msa1072710:CDS 50.0%
GAGGACGATGACAATGCTGA+AGG + chr7_2:69892026-69892045 Msa1072710:CDS 50.0%
GAGCTCACAGCTACAAACTC+AGG + chr7_2:69893011-69893030 Msa1072710:CDS 50.0%
! GCACCCGCATTGGTCAAATT+AGG - chr7_2:69893057-69893076 None:intergenic 50.0%
GGAGCAATACCAGAGGATTC+TGG - chr7_2:69893084-69893103 None:intergenic 50.0%
GATGAGGATGTAGACGAGAC+TGG + chr7_2:69893108-69893127 Msa1072710:CDS 50.0%
GGCAGCAACAATGTCTCCAT+TGG - chr7_2:69893214-69893233 None:intergenic 50.0%
TCCAATGCCGAGAATGACAG+TGG + chr7_2:69893450-69893469 Msa1072710:three_prime_UTR 50.0%
TCCACTGTCATTCTCGGCAT+TGG - chr7_2:69893454-69893473 None:intergenic 50.0%
TTCTTGGGTTCGGGCAGTCA+TGG - chr7_2:69891340-69891359 None:intergenic 55.0%
TCAGGCTGCAGAGCAGTTCA+AGG + chr7_2:69893029-69893048 Msa1072710:CDS 55.0%
!! TTCTGGTTTCGCACCCGCAT+TGG - chr7_2:69893067-69893086 None:intergenic 55.0%
GGTGCGAAACCAGAATCCTC+TGG + chr7_2:69893072-69893091 Msa1072710:CDS 55.0%
CGAGACTGGTGTAGATCCCA+AGG + chr7_2:69893122-69893141 Msa1072710:CDS 55.0%
!! GAGTTGGTGGTGACTCAAGC+TGG + chr7_2:69893150-69893169 Msa1072710:CDS 55.0%
TTCTTGGGTTCGGGCAGTCA+TGG - chr7_2:69891340-69891359 None:intergenic 55.0%
TCAGGCTGCAGAGCAGTTCA+AGG + chr7_2:69893029-69893048 Msa1072710:CDS 55.0%
!! TTCTGGTTTCGCACCCGCAT+TGG - chr7_2:69893067-69893086 None:intergenic 55.0%
GGTGCGAAACCAGAATCCTC+TGG + chr7_2:69893072-69893091 Msa1072710:CDS 55.0%
CGAGACTGGTGTAGATCCCA+AGG + chr7_2:69893122-69893141 Msa1072710:CDS 55.0%
!! GAGTTGGTGGTGACTCAAGC+TGG + chr7_2:69893150-69893169 Msa1072710:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69891271 69893667 69891271 ID=Msa1072710;Name=Msa1072710
chr7_2 mRNA 69891271 69893667 69891271 ID=Msa1072710-mRNA-1;Parent=Msa1072710;Name=Msa1072710-mRNA-1;_AED=0.46;_eAED=0.46;_QI=68|1|1|1|1|1|4|413|203
chr7_2 exon 69891271 69891398 69891271 ID=Msa1072710-mRNA-1:exon:15625;Parent=Msa1072710-mRNA-1
chr7_2 exon 69891960 69892047 69891960 ID=Msa1072710-mRNA-1:exon:15626;Parent=Msa1072710-mRNA-1
chr7_2 exon 69892693 69892823 69892693 ID=Msa1072710-mRNA-1:exon:15627;Parent=Msa1072710-mRNA-1
chr7_2 exon 69892922 69893667 69892922 ID=Msa1072710-mRNA-1:exon:15628;Parent=Msa1072710-mRNA-1
chr7_2 five_prime_UTR 69891271 69891338 69891271 ID=Msa1072710-mRNA-1:five_prime_utr;Parent=Msa1072710-mRNA-1
chr7_2 CDS 69891339 69891398 69891339 ID=Msa1072710-mRNA-1:cds;Parent=Msa1072710-mRNA-1
chr7_2 CDS 69891960 69892047 69891960 ID=Msa1072710-mRNA-1:cds;Parent=Msa1072710-mRNA-1
chr7_2 CDS 69892693 69892823 69892693 ID=Msa1072710-mRNA-1:cds;Parent=Msa1072710-mRNA-1
chr7_2 CDS 69892922 69893254 69892922 ID=Msa1072710-mRNA-1:cds;Parent=Msa1072710-mRNA-1
chr7_2 three_prime_UTR 69893255 69893667 69893255 ID=Msa1072710-mRNA-1:three_prime_utr;Parent=Msa1072710-mRNA-1
Gene Sequence

>Msa1072710

ATGACTGCCCGAACCCAAGAAGAGCTTCTTGCTGCTCATCTCGAACAACAGAAGATTCATCATGATGAGCCTGTAGTTGAGGATGACGATGATGAGGACGATGAGGATGACGAAGACGACGATGATGAGGACGATGACAATGCTGAAGGATTTGAAGGTGATGCATCTGGTAGGTCCAAACAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAAGCTGTTACTGGCGTCAGTCGTGTGACAATCAAGAAGAGCAAGAATATCTTGTTCGTCATCTCAAAACCAGATGTTTTCAAGAGTCCAACTTCTGACACCTACATTATATTCGGGGAAGCTAAGATTGAAGACTTGAGCTCACAGCTACAAACTCAGGCTGCAGAGCAGTTCAAGGCTCCTAATTTGACCAATGCGGGTGCGAAACCAGAATCCTCTGGTATTGCTCCAGAAGATGAGGATGTAGACGAGACTGGTGTAGATCCCAAGGATATTGAGTTGGTGGTGACTCAAGCTGGTGTGCCAAGATCAAGAGCTGTTAAAGCTCTCAAAGCTGCCAATGGAGACATTGTTGCTGCCATTATGGAGCTAACAAATTAA

Protein sequence

>Msa1072710

MTARTQEELLAAHLEQQKIHHDEPVVEDDDDEDDEDDEDDDDEDDDNAEGFEGDASGRSKQTRSEKKSRKAMLKLGMKAVTGVSRVTIKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLTNAGAKPESSGIAPEDEDVDETGVDPKDIELVVTQAGVPRSRAVKALKAANGDIVAAIMELTN*