Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366430 | KEH34477.1 | 86.335 | 161 | 22 | 0 | 1 | 161 | 1 | 161 | 9.28e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366430 | sp|Q9FJK3|AGL80_ARATH | 48.077 | 156 | 78 | 2 | 1 | 155 | 1 | 154 | 8.88e-36 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366430 | A0A072UY35 | 86.335 | 161 | 22 | 0 | 1 | 161 | 1 | 161 | 4.43e-97 | 286 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0366430 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0366430 | 0.800733 | 1.254569e-48 | -8.615850e-47 |
| Msa0200000 | Msa0366430 | 0.800924 | 1.147038e-48 | -8.615850e-47 |
| Msa0366430 | Msa0414410 | 0.800987 | 1.113383e-48 | -8.615850e-47 |
| Msa0366430 | Msa0414420 | 0.863165 | 3.023900e-64 | -8.615850e-47 |
| Msa0366430 | Msa0452900 | 0.821585 | 3.734721e-53 | -8.615850e-47 |
| Msa0366430 | Msa0564890 | 0.819519 | 1.113114e-52 | -8.615850e-47 |
| Msa0366430 | Msa0743810 | 0.800027 | 1.747638e-48 | -8.615850e-47 |
| Msa0366430 | Msa0787600 | 0.802218 | 6.225764e-49 | -8.615850e-47 |
| Msa0366430 | Msa0808010 | 0.804305 | 2.302333e-49 | -8.615850e-47 |
| Msa0366430 | Msa1016280 | 0.804872 | 1.753552e-49 | -8.615850e-47 |
| Msa0366430 | Msa1025360 | 0.812673 | 3.766398e-51 | -8.615850e-47 |
| Msa0366430 | Msa1025370 | 0.816207 | 6.229354e-52 | -8.615850e-47 |
| Msa0366430 | Msa1044830 | 0.814180 | 1.757019e-51 | -8.615850e-47 |
| Msa0366430 | Msa1044840 | 0.812275 | 4.602153e-51 | -8.615850e-47 |
| Msa0366430 | Msa1192640 | 0.817644 | 2.963755e-52 | -8.615850e-47 |
| Msa0366430 | Msa1270230 | 0.800245 | 1.577655e-48 | -8.615850e-47 |
| Msa0366430 | Msa1283330 | 0.800000 | 1.769460e-48 | -8.615850e-47 |
| Msa0366430 | Msa1285930 | 0.818397 | 2.002438e-52 | -8.615850e-47 |
| Msa0366430 | Msa1287800 | 0.853871 | 1.794452e-61 | -8.615850e-47 |
| Msa0366430 | Msa1287810 | 0.835744 | 1.403695e-56 | -8.615850e-47 |
| Msa0267000 | Msa0366430 | 0.804200 | 2.421249e-49 | -8.615850e-47 |
| Msa0267010 | Msa0366430 | 0.807538 | 4.813826e-50 | -8.615850e-47 |
| Msa0342240 | Msa0366430 | 0.811627 | 6.369752e-51 | -8.615850e-47 |
| Msa0360510 | Msa0366430 | 0.805737 | 1.155448e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366430 | MtrunA17_Chr3g0107461 | 86.335 | 161 | 22 | 0 | 1 | 161 | 1 | 161 | 8.53e-101 | 286 |
| Msa0366430 | MtrunA17_Chr4g0031421 | 77.444 | 133 | 30 | 0 | 29 | 161 | 1 | 133 | 2.93e-72 | 213 |
| Msa0366430 | MtrunA17_Chr3g0105791 | 76.692 | 133 | 31 | 0 | 29 | 161 | 1 | 133 | 2.03e-70 | 209 |
| Msa0366430 | MtrunA17_Chr3g0107381 | 54.037 | 161 | 73 | 1 | 1 | 161 | 1 | 160 | 8.13e-57 | 177 |
| Msa0366430 | MtrunA17_Chr3g0110131 | 49.045 | 157 | 79 | 1 | 1 | 157 | 1 | 156 | 3.54e-42 | 140 |
| Msa0366430 | MtrunA17_Chr2g0283941 | 42.500 | 160 | 92 | 0 | 1 | 160 | 1 | 160 | 4.61e-41 | 137 |
| Msa0366430 | MtrunA17_Chr2g0296861 | 47.097 | 155 | 81 | 1 | 1 | 155 | 1 | 154 | 4.31e-39 | 130 |
| Msa0366430 | MtrunA17_Chr4g0014321 | 38.312 | 154 | 95 | 0 | 1 | 154 | 1 | 154 | 1.19e-37 | 128 |
| Msa0366430 | MtrunA17_Chr8g0351751 | 42.038 | 157 | 89 | 1 | 1 | 155 | 1 | 157 | 1.36e-37 | 129 |
| Msa0366430 | MtrunA17_Chr5g0432691 | 39.610 | 154 | 92 | 1 | 1 | 154 | 1 | 153 | 7.13e-37 | 124 |
| Msa0366430 | MtrunA17_Chr4g0014031 | 44.516 | 155 | 86 | 0 | 1 | 155 | 1 | 155 | 1.42e-36 | 125 |
| Msa0366430 | MtrunA17_Chr4g0014131 | 44.099 | 161 | 90 | 0 | 1 | 161 | 1 | 161 | 1.53e-36 | 125 |
| Msa0366430 | MtrunA17_Chr3g0107331 | 40.645 | 155 | 91 | 1 | 3 | 157 | 2 | 155 | 1.82e-35 | 120 |
| Msa0366430 | MtrunA17_Chr3g0106421 | 44.697 | 132 | 73 | 0 | 29 | 160 | 1 | 132 | 1.89e-34 | 120 |
| Msa0366430 | MtrunA17_Chr4g0014121 | 40.645 | 155 | 92 | 0 | 1 | 155 | 29 | 183 | 2.39e-33 | 116 |
| Msa0366430 | MtrunA17_Chr3g0106501 | 47.287 | 129 | 68 | 0 | 29 | 157 | 1 | 129 | 3.50e-33 | 115 |
| Msa0366430 | MtrunA17_Chr4g0013041 | 36.364 | 154 | 96 | 1 | 1 | 154 | 1 | 152 | 8.42e-32 | 113 |
| Msa0366430 | MtrunA17_Chr3g0107351 | 37.419 | 155 | 96 | 1 | 3 | 157 | 2 | 155 | 1.22e-31 | 111 |
| Msa0366430 | MtrunA17_Chr2g0296831 | 47.541 | 122 | 64 | 0 | 1 | 122 | 1 | 122 | 3.18e-31 | 108 |
| Msa0366430 | MtrunA17_Chr5g0420351 | 39.610 | 154 | 91 | 2 | 1 | 154 | 1 | 152 | 4.49e-31 | 109 |
| Msa0366430 | MtrunA17_Chr3g0107341 | 37.419 | 155 | 96 | 1 | 3 | 157 | 2 | 155 | 1.01e-29 | 106 |
| Msa0366430 | MtrunA17_Chr3g0107361 | 36.774 | 155 | 97 | 1 | 3 | 157 | 2 | 155 | 5.64e-29 | 104 |
| Msa0366430 | MtrunA17_Chr1g0188681 | 38.961 | 154 | 92 | 2 | 1 | 154 | 1 | 152 | 1.09e-28 | 103 |
| Msa0366430 | MtrunA17_Chr1g0197461 | 34.868 | 152 | 97 | 2 | 3 | 154 | 2 | 151 | 6.93e-26 | 96.3 |
| Msa0366430 | MtrunA17_Chr4g0012761 | 36.943 | 157 | 97 | 2 | 1 | 157 | 1 | 155 | 6.54e-25 | 94.0 |
| Msa0366430 | MtrunA17_Chr1g0188661 | 37.419 | 155 | 93 | 3 | 1 | 154 | 1 | 152 | 1.30e-24 | 93.2 |
| Msa0366430 | MtrunA17_Chr1g0197261 | 32.903 | 155 | 100 | 3 | 1 | 154 | 1 | 152 | 5.33e-24 | 91.7 |
| Msa0366430 | MtrunA17_Chr1g0193311 | 37.419 | 155 | 93 | 3 | 1 | 154 | 1 | 152 | 3.99e-23 | 89.4 |
| Msa0366430 | MtrunA17_Chr7g0218151 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 4.25e-23 | 89.4 |
| Msa0366430 | MtrunA17_Chr1g0188651 | 35.404 | 161 | 100 | 2 | 1 | 161 | 1 | 157 | 7.70e-23 | 88.6 |
| Msa0366430 | MtrunA17_Chr1g0197321 | 32.051 | 156 | 101 | 3 | 1 | 154 | 1 | 153 | 5.10e-22 | 86.7 |
| Msa0366430 | MtrunA17_Chr4g0008701 | 30.137 | 146 | 94 | 4 | 16 | 158 | 19 | 159 | 2.43e-15 | 72.4 |
| Msa0366430 | MtrunA17_Chr7g0267601 | 27.673 | 159 | 107 | 4 | 3 | 158 | 6 | 159 | 3.57e-15 | 72.0 |
| Msa0366430 | MtrunA17_Chr3g0128721 | 27.344 | 128 | 87 | 2 | 16 | 139 | 19 | 144 | 3.21e-12 | 63.5 |
| Msa0366430 | MtrunA17_Chr6g0449851 | 27.500 | 160 | 101 | 5 | 1 | 154 | 1 | 151 | 4.59e-12 | 62.4 |
| Msa0366430 | MtrunA17_Chr1g0212151 | 26.946 | 167 | 106 | 6 | 1 | 161 | 1 | 157 | 8.58e-12 | 62.0 |
| Msa0366430 | MtrunA17_Chr6g0457851 | 29.204 | 113 | 73 | 3 | 1 | 107 | 11 | 122 | 1.03e-11 | 61.6 |
| Msa0366430 | MtrunA17_Chr1g0212471 | 28.750 | 160 | 98 | 6 | 1 | 154 | 1 | 150 | 5.77e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366430 | AT5G48670.1 | 48.077 | 156 | 78 | 2 | 1 | 155 | 1 | 154 | 9.02e-37 | 129 |
| Msa0366430 | AT1G65300.1 | 40.127 | 157 | 92 | 2 | 5 | 161 | 4 | 158 | 3.59e-31 | 113 |
| Msa0366430 | AT3G05860.2 | 41.026 | 156 | 79 | 3 | 1 | 150 | 1 | 149 | 1.23e-30 | 110 |
| Msa0366430 | AT1G65330.1 | 40.541 | 148 | 87 | 1 | 3 | 150 | 2 | 148 | 4.90e-30 | 110 |
| Msa0366430 | AT3G05860.3 | 41.026 | 156 | 79 | 3 | 1 | 150 | 1 | 149 | 5.59e-30 | 109 |
| Msa0366430 | AT3G05860.1 | 41.026 | 156 | 79 | 3 | 1 | 150 | 1 | 149 | 7.33e-30 | 109 |
| Msa0366430 | AT5G27810.1 | 52.809 | 89 | 42 | 0 | 29 | 117 | 1 | 89 | 1.58e-27 | 99.8 |
| Msa0366430 | AT5G26650.1 | 34.641 | 153 | 99 | 1 | 5 | 157 | 3 | 154 | 1.35e-23 | 95.1 |
| Msa0366430 | AT5G27960.1 | 43.396 | 106 | 60 | 0 | 5 | 110 | 3 | 108 | 8.35e-23 | 92.4 |
| Msa0366430 | AT1G31630.1 | 35.928 | 167 | 87 | 6 | 3 | 161 | 2 | 156 | 1.32e-22 | 92.0 |
| Msa0366430 | AT1G31640.1 | 39.024 | 164 | 85 | 5 | 3 | 160 | 2 | 156 | 1.48e-22 | 93.2 |
| Msa0366430 | AT5G26630.1 | 35.065 | 154 | 99 | 1 | 1 | 154 | 1 | 153 | 3.15e-22 | 89.0 |
| Msa0366430 | AT2G28700.1 | 35.065 | 154 | 91 | 3 | 1 | 150 | 1 | 149 | 1.90e-21 | 89.0 |
| Msa0366430 | AT1G22590.2 | 39.450 | 109 | 66 | 0 | 1 | 109 | 1 | 109 | 2.30e-21 | 85.5 |
| Msa0366430 | AT5G06500.1 | 36.364 | 110 | 66 | 1 | 1 | 110 | 1 | 106 | 2.72e-18 | 79.0 |
| Msa0366430 | AT5G26580.1 | 37.624 | 101 | 49 | 1 | 1 | 101 | 1 | 87 | 4.56e-14 | 68.6 |
| Msa0366430 | AT2G40210.1 | 33.663 | 101 | 67 | 0 | 1 | 101 | 1 | 101 | 4.66e-13 | 65.9 |
| Msa0366430 | AT5G26865.1 | 41.667 | 72 | 41 | 1 | 24 | 94 | 2 | 73 | 2.09e-11 | 58.5 |
Find 35 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTCATTTCCTCCTTTC+TGG | 0.057843 | 3_1:+61323925 | None:intergenic |
| ATTCATACCACAGAATTTAA+TGG | 0.196701 | 3_1:-61323887 | Msa0366430:CDS |
| CAGGTTTGGCCATCAGATTC+AGG | 0.224706 | 3_1:-61324082 | Msa0366430:CDS |
| CTGAATGTTATCCTCCTCTT+CGG | 0.350265 | 3_1:+61324402 | None:intergenic |
| TATTCTTGAGGCAAAGTATT+GGG | 0.351669 | 3_1:-61323985 | Msa0366430:CDS |
| GTTCAAGAGTTTGCATGAAC+TGG | 0.380322 | 3_1:-61324038 | Msa0366430:CDS |
| GATGAAATTAGCACTCTTTG+TGG | 0.382102 | 3_1:-61324151 | Msa0366430:CDS |
| CTGAATCTGATGGCCAAACC+TGG | 0.394792 | 3_1:+61324083 | None:intergenic |
| TGAATGTTATCCTCCTCTTC+GGG | 0.395416 | 3_1:+61324403 | None:intergenic |
| TTTGTTTCATCAACTGCTCA+TGG | 0.410143 | 3_1:+61323957 | None:intergenic |
| AATGAAATGATGAATGATAT+TGG | 0.442815 | 3_1:+61323907 | None:intergenic |
| AGGTTTGGCCATCAGATTCA+GGG | 0.444978 | 3_1:-61324081 | Msa0366430:CDS |
| ACAATCCTCAAGCCCAGGTT+TGG | 0.451431 | 3_1:-61324096 | Msa0366430:CDS |
| GGGTTAGAAGTGTGATATCC+AGG | 0.506627 | 3_1:-61324060 | Msa0366430:CDS |
| CACTATCATGGCTAGAGGTA+AGG | 0.508320 | 3_1:-61324451 | None:intergenic |
| GTATTCTTGAGGCAAAGTAT+TGG | 0.524622 | 3_1:-61323986 | Msa0366430:CDS |
| GGAGGATAACATTCAGAAAG+AGG | 0.525464 | 3_1:-61324395 | Msa0366430:CDS |
| ACTCTTTGTGGAATAGAAGC+TGG | 0.543874 | 3_1:-61324139 | Msa0366430:CDS |
| TAAATATCCATTAAATTCTG+TGG | 0.554522 | 3_1:+61323880 | None:intergenic |
| GATGGCCAAACCTGGGCTTG+AGG | 0.558655 | 3_1:+61324091 | None:intergenic |
| GCAAAACAATCCTCAAGCCC+AGG | 0.573782 | 3_1:-61324101 | Msa0366430:CDS |
| ACAAAGGAAGGAAACCAGAA+AGG | 0.579534 | 3_1:-61323939 | Msa0366430:CDS |
| TTCATGCAAACTCTTGAACC+TGG | 0.581655 | 3_1:+61324042 | None:intergenic |
| CAAATTCTCATCAATAAAAG+CGG | 0.585206 | 3_1:+61323829 | None:intergenic |
| TGAATCTGATGGCCAAACCT+GGG | 0.592740 | 3_1:+61324084 | None:intergenic |
| CTTCTAACCCCTGAATCTGA+TGG | 0.608216 | 3_1:+61324073 | None:intergenic |
| AAGGAAGGAAACCAGAAAGG+AGG | 0.615022 | 3_1:-61323936 | Msa0366430:CDS |
| ACATAACATGTGACCCGAAG+AGG | 0.618667 | 3_1:-61324416 | Msa0366430:CDS |
| ATGAGCAGTTGATGAAACAA+AGG | 0.621497 | 3_1:-61323955 | Msa0366430:CDS |
| GGTTTGGCCATCAGATTCAG+GGG | 0.621539 | 3_1:-61324080 | Msa0366430:CDS |
| GCAGTTGATGAAACAAAGGA+AGG | 0.627441 | 3_1:-61323951 | Msa0366430:CDS |
| TATTGATGAGAATTTGAGGG+AGG | 0.643852 | 3_1:-61323822 | Msa0366430:CDS |
| ATCCTCACTATCATGGCTAG+AGG | 0.659018 | 3_1:-61324456 | None:intergenic |
| TAACATGTGACCCGAAGAGG+AGG | 0.659370 | 3_1:-61324413 | Msa0366430:CDS |
| TGGATCAAGAGGTATTCTTG+AGG | 0.709854 | 3_1:-61323997 | Msa0366430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATGGATTTTTTTTTATT+AGG | - | chr3_1:61324038-61324057 | Msa0366430:CDS | 10.0% |
| !!! | TTATGGATTTTTTTTTATTA+GGG | - | chr3_1:61324039-61324058 | Msa0366430:CDS | 10.0% |
| !!! | TAAATTTGGAATTTTACTAT+AGG | - | chr3_1:61324005-61324024 | Msa0366430:CDS | 15.0% |
| !! | TATAGGTTATATATTGTTTA+TGG | - | chr3_1:61324022-61324041 | Msa0366430:CDS | 15.0% |
| !! | AATGAAATGATGAATGATAT+TGG | + | chr3_1:61324324-61324343 | None:intergenic | 20.0% |
| !! | TAAATATCCATTAAATTCTG+TGG | + | chr3_1:61324351-61324370 | None:intergenic | 20.0% |
| !!! | TTTTATTGATGAGAATTTGA+GGG | - | chr3_1:61324403-61324422 | Msa0366430:CDS | 20.0% |
| ! | ATTCATACCACAGAATTTAA+TGG | - | chr3_1:61324341-61324360 | Msa0366430:intron | 25.0% |
| ! | CAAATTCTCATCAATAAAAG+CGG | + | chr3_1:61324402-61324421 | None:intergenic | 25.0% |
| !! | CTTTTATTGATGAGAATTTG+AGG | - | chr3_1:61324402-61324421 | Msa0366430:CDS | 25.0% |
| ACATTCAGAAAGAGGAAAAA+TGG | - | chr3_1:61323841-61323860 | Msa0366430:CDS | 30.0% | |
| TATGTATGATATGCAAAGAG+AGG | + | chr3_1:61323877-61323896 | None:intergenic | 30.0% | |
| ACTGGAACAAAGTAAAAAGA+TGG | - | chr3_1:61324208-61324227 | Msa0366430:intron | 30.0% | |
| ! | TATTCTTGAGGCAAAGTATT+GGG | - | chr3_1:61324243-61324262 | Msa0366430:intron | 30.0% |
| GATGAAATTAGCACTCTTTG+TGG | - | chr3_1:61324077-61324096 | Msa0366430:CDS | 35.0% | |
| GGAACAAAGTAAAAAGATGG+TGG | - | chr3_1:61324211-61324230 | Msa0366430:intron | 35.0% | |
| !! | TAAAAAGATGGTGGATCAAG+AGG | - | chr3_1:61324220-61324239 | Msa0366430:intron | 35.0% |
| GTATTCTTGAGGCAAAGTAT+TGG | - | chr3_1:61324242-61324261 | Msa0366430:intron | 35.0% | |
| TTTGTTTCATCAACTGCTCA+TGG | + | chr3_1:61324274-61324293 | None:intergenic | 35.0% | |
| !! | ATGAGCAGTTGATGAAACAA+AGG | - | chr3_1:61324273-61324292 | Msa0366430:intron | 35.0% |
| TATTGATGAGAATTTGAGGG+AGG | - | chr3_1:61324406-61324425 | Msa0366430:CDS | 35.0% | |
| TGAATGTTATCCTCCTCTTC+GGG | + | chr3_1:61323828-61323847 | None:intergenic | 40.0% | |
| CTGAATGTTATCCTCCTCTT+CGG | + | chr3_1:61323829-61323848 | None:intergenic | 40.0% | |
| GGAGGATAACATTCAGAAAG+AGG | - | chr3_1:61323833-61323852 | Msa0366430:CDS | 40.0% | |
| ACTCTTTGTGGAATAGAAGC+TGG | - | chr3_1:61324089-61324108 | Msa0366430:CDS | 40.0% | |
| TTCATGCAAACTCTTGAACC+TGG | + | chr3_1:61324189-61324208 | None:intergenic | 40.0% | |
| GTTCAAGAGTTTGCATGAAC+TGG | - | chr3_1:61324190-61324209 | Msa0366430:intron | 40.0% | |
| !! | TGGATCAAGAGGTATTCTTG+AGG | - | chr3_1:61324231-61324250 | Msa0366430:intron | 40.0% |
| !! | GCAGTTGATGAAACAAAGGA+AGG | - | chr3_1:61324277-61324296 | Msa0366430:intron | 40.0% |
| ACAAAGGAAGGAAACCAGAA+AGG | - | chr3_1:61324289-61324308 | Msa0366430:intron | 40.0% | |
| ATTGGTCATTTCCTCCTTTC+TGG | + | chr3_1:61324306-61324325 | None:intergenic | 40.0% | |
| ACATAACATGTGACCCGAAG+AGG | - | chr3_1:61323812-61323831 | Msa0366430:CDS | 45.0% | |
| TGAATCTGATGGCCAAACCT+GGG | + | chr3_1:61324147-61324166 | None:intergenic | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | - | chr3_1:61324147-61324166 | Msa0366430:CDS | 45.0% | |
| CTTCTAACCCCTGAATCTGA+TGG | + | chr3_1:61324158-61324177 | None:intergenic | 45.0% | |
| ! | GGGTTAGAAGTGTGATATCC+AGG | - | chr3_1:61324168-61324187 | Msa0366430:CDS | 45.0% |
| AAGGAAGGAAACCAGAAAGG+AGG | - | chr3_1:61324292-61324311 | Msa0366430:intron | 45.0% | |
| !!! | TAACTTTTATTTAATAAATT+TGG | - | chr3_1:61323991-61324010 | Msa0366430:CDS | 5.0% |
| TAACATGTGACCCGAAGAGG+AGG | - | chr3_1:61323815-61323834 | Msa0366430:CDS | 50.0% | |
| GCAAAACAATCCTCAAGCCC+AGG | - | chr3_1:61324127-61324146 | Msa0366430:CDS | 50.0% | |
| ACAATCCTCAAGCCCAGGTT+TGG | - | chr3_1:61324132-61324151 | Msa0366430:CDS | 50.0% | |
| CTGAATCTGATGGCCAAACC+TGG | + | chr3_1:61324148-61324167 | None:intergenic | 50.0% | |
| CAGGTTTGGCCATCAGATTC+AGG | - | chr3_1:61324146-61324165 | Msa0366430:CDS | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | - | chr3_1:61324148-61324167 | Msa0366430:CDS | 50.0% | |
| GATGGCCAAACCTGGGCTTG+AGG | + | chr3_1:61324140-61324159 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61323784 | 61324466 | 61323784 | ID=Msa0366430;Name=Msa0366430 |
| chr3_1 | mRNA | 61323784 | 61324466 | 61323784 | ID=Msa0366430-mRNA-1;Parent=Msa0366430;Name=Msa0366430-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|2|0|161 |
| chr3_1 | exon | 61324388 | 61324466 | 61324388 | ID=Msa0366430-mRNA-1:exon:11882;Parent=Msa0366430-mRNA-1 |
| chr3_1 | exon | 61323784 | 61324190 | 61323784 | ID=Msa0366430-mRNA-1:exon:11881;Parent=Msa0366430-mRNA-1 |
| chr3_1 | CDS | 61324388 | 61324466 | 61324388 | ID=Msa0366430-mRNA-1:cds;Parent=Msa0366430-mRNA-1 |
| chr3_1 | CDS | 61323784 | 61324190 | 61323784 | ID=Msa0366430-mRNA-1:cds;Parent=Msa0366430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
