AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577870 MtrunA17_Chr1g0201791 76.645 304 23 5 1 303 1 257 8.63e-63 199
Msa0577870 MtrunA17_Chr6g0464351 70.330 91 27 0 212 302 20 110 3.97e-19 81.3
Msa0577870 MtrunA17_Chr6g0472131 69.231 91 25 1 212 302 20 107 1.07e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 114 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTCTCAATAAAATTCTT+TGG 0.247733 4_1:+82185738 Msa0577870:three_prime_UTR
AAGAAGAAACACCATTTCTT+TGG 0.265818 4_1:+82185425 Msa0577870:CDS
CTTATAATTAATTATGCTTT+TGG 0.268011 4_1:+82185526 Msa0577870:three_prime_UTR
TTGTGCCTGTGAGCATTCTC+TGG 0.272448 4_1:-82185293 None:intergenic
CCATGAGCATCATGAGAAAA+AGG 0.283151 4_1:+82185370 Msa0577870:CDS
GGCGGATATGGTGGTGGTTA+TGG 0.297675 4_1:+82183990 Msa0577870:CDS
CCAGTTTGCTTTGAGTGGTT+TGG 0.300019 4_1:+82185582 Msa0577870:three_prime_UTR
ACCACCACCGGTGGTGGTTT+TGG 0.301983 4_1:-82184174 None:intergenic
TCCGCCACCCGTGGTTGTTT+TGG 0.307495 4_1:-82183973 None:intergenic
ACAACCACGGGTGGCGGATA+TGG 0.315139 4_1:+82183978 Msa0577870:CDS
GGCGGCTACGGCGGTGGTTA+TGG 0.318700 4_1:+82183891 Msa0577870:CDS
GGCGGCTACGGTGGTGGTTA+TGG 0.321562 4_1:+82184089 Msa0577870:CDS
GCCGCCACCAGTGGTTGTTT+TGG 0.330964 4_1:-82183874 None:intergenic
GGCGGCTACGGTGGTGGATA+TGG 0.331422 4_1:+82184140 Msa0577870:CDS
GGTGGCTACGGTGGTGGTTA+TGG 0.331534 4_1:+82183939 Msa0577870:CDS
CATGAGCATCTTGGTGAGTT+AGG 0.335349 4_1:+82184257 Msa0577870:CDS
ATAAGCATACAAGCATATTA+TGG 0.340474 4_1:+82185478 Msa0577870:three_prime_UTR
GGCGGCTACGGTGGTGGTTA+TGG 0.343719 4_1:+82184038 Msa0577870:CDS
GCCGCCTCCAGTGGTTGTTT+TGG 0.346631 4_1:-82184123 None:intergenic
ACAGGTGATGACTATGATTC+TGG 0.353087 4_1:+82183693 Msa0577870:CDS
ACCACCACCGGTGGTGGTTA+TGG 0.357161 4_1:+82184179 Msa0577870:CDS
GTAGCCACCACCAGTGGTTT+TGG 0.366481 4_1:-82183925 None:intergenic
GAGGAAGAAGAAGAAGTTCA+TGG 0.387151 4_1:+82185401 Msa0577870:CDS
TCATATGGTAATGACAATTC+TGG 0.390159 4_1:+82183777 Msa0577870:CDS
GAGTTAGGTGCTGCAGCTGC+TGG 0.393240 4_1:+82184272 Msa0577870:CDS
CCAAACCACTCAAAGCAAAC+TGG 0.402796 4_1:-82185582 None:intergenic
ACTGATAAGTACACAATATA+CGG 0.407792 4_1:+82185661 Msa0577870:three_prime_UTR
GAAGCAGCTGCAGTGGGATC+TGG 0.415672 4_1:+82185335 Msa0577870:CDS
TACTCTAATAATGAAACATC+TGG 0.429220 4_1:+82183840 Msa0577870:CDS
GGTTACAATAAAACATCATA+TGG 0.436340 4_1:+82183762 Msa0577870:CDS
TCTGGTGGTGACTATGAAAC+TGG 0.450209 4_1:+82183795 Msa0577870:CDS
ATCTTCCAGTTTGCTTTGAG+TGG 0.452238 4_1:+82185577 Msa0577870:three_prime_UTR
TAACCACTGTCAGTGTCTAT+AGG 0.455188 4_1:-82183651 None:intergenic
ACTGGTGGCGGCTACGGCGG+TGG 0.456265 4_1:+82183885 Msa0577870:CDS
ACAACCACTGGTGGCGGCTA+CGG 0.469364 4_1:+82183879 Msa0577870:CDS
ACTGGTGGCGGCTACGGTGG+TGG 0.471209 4_1:+82184083 Msa0577870:CDS
ACTGGAGGCGGCTACGGTGG+TGG 0.471438 4_1:+82184134 Msa0577870:CDS
ACCACTGGCGGCTACGGTGG+TGG 0.476187 4_1:+82184032 Msa0577870:CDS
CATATGTTCAGCCAAAGAAA+TGG 0.483204 4_1:-82185436 None:intergenic
ACAACCACTGGTGGCGGCTA+CGG 0.484339 4_1:+82184077 Msa0577870:CDS
TACAATGATGACCAGCCATC+TGG 0.494200 4_1:+82183735 Msa0577870:CDS
ACCAAAACAACCACGGGTGG+CGG 0.495591 4_1:+82183972 Msa0577870:CDS
CTTGGTGTCATATAGATGTA+TGG 0.495626 4_1:+82185618 Msa0577870:three_prime_UTR
AGTTGCAGAAGCAGCTGCAG+TGG 0.498157 4_1:+82185328 Msa0577870:CDS
ACCAAAACCACCACCGGTGG+TGG 0.498197 4_1:+82184173 Msa0577870:CDS
GCCAAAACAACCACTGGTGG+CGG 0.500275 4_1:+82183873 Msa0577870:CDS
AAAACAACCACTGGCGGCTA+CGG 0.502509 4_1:+82184026 Msa0577870:CDS
TTTGGAGAATGTTTCCAGCT+TGG 0.505186 4_1:+82185600 Msa0577870:three_prime_UTR
ACTGGTGGTGGCTACGGTGG+TGG 0.506091 4_1:+82183933 Msa0577870:CDS
TGTGCCTGTGAGCATTCTCT+GGG 0.507199 4_1:-82185292 None:intergenic
CACAGCAAACATGAGCATCT+TGG 0.507345 4_1:+82184248 Msa0577870:CDS
CATCATCATGCTTCTTGTGA+TGG 0.509136 4_1:-82183617 None:intergenic
AACAAAACATCATACTCTAC+AGG 0.515763 4_1:+82183675 Msa0577870:CDS
ACCATAACCACCACCGGTGG+TGG 0.516051 4_1:-82184180 None:intergenic
ACAACCACTGGAGGCGGCTA+CGG 0.519220 4_1:+82184128 Msa0577870:CDS
GACACCAAAACCACTGGTGG+TGG 0.521255 4_1:+82183921 Msa0577870:CDS
TCTGACACCAAAACAACCAC+TGG 0.530125 4_1:+82184116 Msa0577870:CDS
ACCACGGGTGGCGGATATGG+TGG 0.535025 4_1:+82183981 Msa0577870:CDS
AAAACCACTGGTGGTGGCTA+CGG 0.535946 4_1:+82183927 Msa0577870:CDS
GCAGCTGCAGTGGGATCTGG+TGG 0.536922 4_1:+82185338 Msa0577870:CDS
AATGAAACATCTGGTGGCTA+TGG 0.540775 4_1:+82183849 Msa0577870:CDS
ACCAAAACAACCACTGGAGG+CGG 0.541750 4_1:+82184122 Msa0577870:CDS
ACTAAAACAACCACTGGTGG+CGG 0.542116 4_1:+82184071 Msa0577870:CDS
ACCACTGGTGGCGGCTACGG+TGG 0.543033 4_1:+82184080 Msa0577870:CDS
GATGGAAGAGGCCACGGCTA+CGG 0.545278 4_1:-82183599 None:intergenic
GACTCTGACACCAAAACCAC+TGG 0.545560 4_1:+82183915 Msa0577870:CDS
GTTGCAGAAGCAGCTGCAGT+GGG 0.546096 4_1:+82185329 Msa0577870:CDS
TTTCTCATGATGCTCATGGA+AGG 0.551185 4_1:-82185366 None:intergenic
ACCACTGGTGGCGGCTACGG+CGG 0.552249 4_1:+82183882 Msa0577870:CDS
ACGGGTGGCGGATATGGTGG+TGG 0.554084 4_1:+82183984 Msa0577870:CDS
TGTAACCACCACCAGATGGC+TGG 0.555821 4_1:-82183746 None:intergenic
AGCATGATGATGATGATAGT+AGG 0.556478 4_1:+82183628 Msa0577870:CDS
ACCACTGGAGGCGGCTACGG+TGG 0.561554 4_1:+82184131 Msa0577870:CDS
CATGCTTCTTGTGATGGAAG+AGG 0.565809 4_1:-82183611 None:intergenic
ACAACCACTGGCGGCTACGG+TGG 0.567166 4_1:+82184029 Msa0577870:CDS
TGATGATGTTGATTATAAGA+AGG 0.572766 4_1:+82184214 Msa0577870:CDS
ACCACTGGTGGTGGCTACGG+TGG 0.575768 4_1:+82183930 Msa0577870:CDS
ACCACCGTAGCCGCCTCCAG+TGG 0.576587 4_1:-82184132 None:intergenic
TTAGGTGCTGCAGCTGCTGG+TGG 0.580522 4_1:+82184275 Msa0577870:CDS
TCTGACACTAAAACAACCAC+TGG 0.581882 4_1:+82184017 Msa0577870:CDS
TCTGACACTAAAACAACCAC+TGG 0.583853 4_1:+82184065 Msa0577870:CDS
TCTGACACCAAAACAACCAC+GGG 0.584515 4_1:+82183966 Msa0577870:CDS
ACATCTATATGACACCAAGC+TGG 0.586244 4_1:-82185614 None:intergenic
TCTGACACCAAAACCACCAC+CGG 0.597416 4_1:+82184167 Msa0577870:CDS
GACACTAAAACAACCACTGG+TGG 0.602888 4_1:+82184068 Msa0577870:CDS
ACCACCATATCCGCCACCCG+TGG 0.603586 4_1:-82183982 None:intergenic
CAGCTGCAGTGGGATCTGGT+GGG 0.605425 4_1:+82185339 Msa0577870:CDS
TCTTGTGATGGAAGAGGCCA+CGG 0.606734 4_1:-82183605 None:intergenic
GACACTAAAACAACCACTGG+CGG 0.607430 4_1:+82184020 Msa0577870:CDS
ATCGTCACCATAACCACCAC+CGG 0.607906 4_1:-82184186 None:intergenic
TGTCATATAGATGTATGGTA+TGG 0.608599 4_1:+82185623 Msa0577870:three_prime_UTR
TGATGTTGATTATAAGAAGG+AGG 0.610955 4_1:+82184217 Msa0577870:CDS
TATGGTGCCAAAACAACCAC+TGG 0.612429 4_1:+82183867 Msa0577870:CDS
TCTAATAATGAAACATCTGG+TGG 0.616695 4_1:+82183843 Msa0577870:CDS
CTCTGACACCAAAACAACCA+CGG 0.619600 4_1:+82183965 Msa0577870:CDS
GACACCAAAACAACCACTGG+AGG 0.621362 4_1:+82184119 Msa0577870:CDS
ACCACCGTAGCCGCCACCAG+TGG 0.622033 4_1:-82184081 None:intergenic
TTATTGTAACCACCACCAGA+TGG 0.622037 4_1:-82183750 None:intergenic
ACCACCACCGTAGCCGCCAG+TGG 0.623805 4_1:-82184033 None:intergenic
ACGGTTCTCTTCATCAGACA+TGG 0.625188 4_1:-82183580 None:intergenic
ACCGCCGTAGCCGCCACCAG+TGG 0.626903 4_1:-82183883 None:intergenic
GATGACCAGCCATCTGGTGG+TGG 0.627887 4_1:+82183741 Msa0577870:CDS
GACACCAAAACAACCACGGG+TGG 0.630084 4_1:+82183969 Msa0577870:CDS
CAAGATGCTCATGTTTGCTG+TGG 0.630178 4_1:-82184247 None:intergenic
GACACCAAAACCACCACCGG+TGG 0.634543 4_1:+82184170 Msa0577870:CDS
GATGAAGAGAACCGTAGCCG+TGG 0.635065 4_1:+82183588 Msa0577870:CDS
ACCACCGTAGCCACCACCAG+TGG 0.645976 4_1:-82183931 None:intergenic
AAGACCCAGAGAATGCTCAC+AGG 0.646034 4_1:+82185288 Msa0577870:CDS
TCTGACACCAAAACCACTGG+TGG 0.658393 4_1:+82183918 Msa0577870:CDS
GGTGCCAAAACAACCACTGG+TGG 0.667985 4_1:+82183870 Msa0577870:CDS
GTCACCATAACCACCACCGG+TGG 0.707664 4_1:-82184183 None:intergenic
AATGATGACCAGCCATCTGG+TGG 0.714048 4_1:+82183738 Msa0577870:CDS
TATGGTAATGACAATTCTGG+TGG 0.722206 4_1:+82183780 Msa0577870:CDS
AGGCCTATAGACACTGACAG+TGG 0.729201 4_1:+82183648 Msa0577870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATAAAAAAAAATA+AGG - chr4_1:82184675-82184694 None:intergenic 0.0%
!!! TATTTTTATTTTTATTTTTT+TGG + chr4_1:82185016-82185035 Msa0577870:intron 0.0%
!! AAAAAATATAAAAAAAAATA+AGG - chr4_1:82184675-82184694 None:intergenic 0.0%
!!! TATTTTTATTTTTATTTTTT+TGG + chr4_1:82185016-82185035 Msa0577870:intron 0.0%
!! AAAAAATTAATTACAAAGTT+TGG - chr4_1:82184974-82184993 None:intergenic 10.0%
!! AAAAAATTAATTACAAAGTT+TGG - chr4_1:82184974-82184993 None:intergenic 10.0%
!! GAAACAAATAACAAAAATAT+GGG - chr4_1:82184356-82184375 None:intergenic 15.0%
!! AGAAACAAATAACAAAAATA+TGG - chr4_1:82184357-82184376 None:intergenic 15.0%
!!! AATTATTCAAATGTTTTGTA+AGG - chr4_1:82184457-82184476 None:intergenic 15.0%
!! AATGTAATGTTTAAATACTA+CGG - chr4_1:82184874-82184893 None:intergenic 15.0%
!!! TACTTACAAATTTTCAATTT+TGG - chr4_1:82185207-82185226 None:intergenic 15.0%
!!! CTTATAATTAATTATGCTTT+TGG + chr4_1:82185526-82185545 Msa0577870:three_prime_UTR 15.0%
!! GAAACAAATAACAAAAATAT+GGG - chr4_1:82184356-82184375 None:intergenic 15.0%
!! AGAAACAAATAACAAAAATA+TGG - chr4_1:82184357-82184376 None:intergenic 15.0%
!!! AATTATTCAAATGTTTTGTA+AGG - chr4_1:82184457-82184476 None:intergenic 15.0%
!! AATGTAATGTTTAAATACTA+CGG - chr4_1:82184874-82184893 None:intergenic 15.0%
!!! TACTTACAAATTTTCAATTT+TGG - chr4_1:82185207-82185226 None:intergenic 15.0%
!!! CTTATAATTAATTATGCTTT+TGG + chr4_1:82185526-82185545 Msa0577870:three_prime_UTR 15.0%
!!! AATCAATAAATTTTCTCTGA+TGG + chr4_1:82184407-82184426 Msa0577870:intron 20.0%
!!! TTAATGCAATTTTCCTATTA+TGG - chr4_1:82184919-82184938 None:intergenic 20.0%
!! TTTGTCTCAATAAAATTCTT+TGG + chr4_1:82185738-82185757 Msa0577870:three_prime_UTR 20.0%
!!! AATCAATAAATTTTCTCTGA+TGG + chr4_1:82184407-82184426 Msa0577870:intron 20.0%
!!! TTAATGCAATTTTCCTATTA+TGG - chr4_1:82184919-82184938 None:intergenic 20.0%
!! TTTGTCTCAATAAAATTCTT+TGG + chr4_1:82185738-82185757 Msa0577870:three_prime_UTR 20.0%
! GGTTACAATAAAACATCATA+TGG + chr4_1:82183762-82183781 Msa0577870:CDS 25.0%
! TACTCTAATAATGAAACATC+TGG + chr4_1:82183840-82183859 Msa0577870:CDS 25.0%
!! TGATGATGTTGATTATAAGA+AGG + chr4_1:82184214-82184233 Msa0577870:CDS 25.0%
! TAAATAGCAATTAGGAGTAA+TGG - chr4_1:82184327-82184346 None:intergenic 25.0%
! GTGTAAAACTCAATATTCTA+TGG - chr4_1:82184741-82184760 None:intergenic 25.0%
! GACTCATATTCATTAATTAG+TGG + chr4_1:82184789-82184808 Msa0577870:intron 25.0%
! TTCCTATTATGGAAATCTTA+GGG - chr4_1:82184908-82184927 None:intergenic 25.0%
! TTTCCTATTATGGAAATCTT+AGG - chr4_1:82184909-82184928 None:intergenic 25.0%
!!! TATTTTTTTGGTACAAGAAG+AGG + chr4_1:82185028-82185047 Msa0577870:intron 25.0%
!!! ATTTTTTTGGTACAAGAAGA+GGG + chr4_1:82185029-82185048 Msa0577870:intron 25.0%
! AATAAAATACGCAAGAACTT+GGG - chr4_1:82185060-82185079 None:intergenic 25.0%
! AAATAAAATACGCAAGAACT+TGG - chr4_1:82185061-82185080 None:intergenic 25.0%
! TGTAAAAATTCGATCTTGAT+TGG + chr4_1:82185088-82185107 Msa0577870:intron 25.0%
! TTACGCTATAAATAGACATA+GGG + chr4_1:82185158-82185177 Msa0577870:intron 25.0%
! ATAAGCATACAAGCATATTA+TGG + chr4_1:82185478-82185497 Msa0577870:three_prime_UTR 25.0%
! ACTGATAAGTACACAATATA+CGG + chr4_1:82185661-82185680 Msa0577870:three_prime_UTR 25.0%
! GGTTACAATAAAACATCATA+TGG + chr4_1:82183762-82183781 Msa0577870:CDS 25.0%
! TACTCTAATAATGAAACATC+TGG + chr4_1:82183840-82183859 Msa0577870:CDS 25.0%
!! TGATGATGTTGATTATAAGA+AGG + chr4_1:82184214-82184233 Msa0577870:CDS 25.0%
! TAAATAGCAATTAGGAGTAA+TGG - chr4_1:82184327-82184346 None:intergenic 25.0%
! GTGTAAAACTCAATATTCTA+TGG - chr4_1:82184741-82184760 None:intergenic 25.0%
! GACTCATATTCATTAATTAG+TGG + chr4_1:82184789-82184808 Msa0577870:intron 25.0%
! TTCCTATTATGGAAATCTTA+GGG - chr4_1:82184908-82184927 None:intergenic 25.0%
! TTTCCTATTATGGAAATCTT+AGG - chr4_1:82184909-82184928 None:intergenic 25.0%
!!! TATTTTTTTGGTACAAGAAG+AGG + chr4_1:82185028-82185047 Msa0577870:intron 25.0%
!!! ATTTTTTTGGTACAAGAAGA+GGG + chr4_1:82185029-82185048 Msa0577870:intron 25.0%
! AATAAAATACGCAAGAACTT+GGG - chr4_1:82185060-82185079 None:intergenic 25.0%
! AAATAAAATACGCAAGAACT+TGG - chr4_1:82185061-82185080 None:intergenic 25.0%
! TGTAAAAATTCGATCTTGAT+TGG + chr4_1:82185088-82185107 Msa0577870:intron 25.0%
! TTACGCTATAAATAGACATA+GGG + chr4_1:82185158-82185177 Msa0577870:intron 25.0%
! ATAAGCATACAAGCATATTA+TGG + chr4_1:82185478-82185497 Msa0577870:three_prime_UTR 25.0%
! ACTGATAAGTACACAATATA+CGG + chr4_1:82185661-82185680 Msa0577870:three_prime_UTR 25.0%
AACAAAACATCATACTCTAC+AGG + chr4_1:82183675-82183694 Msa0577870:CDS 30.0%
! TCATATGGTAATGACAATTC+TGG + chr4_1:82183777-82183796 Msa0577870:CDS 30.0%
TCTAATAATGAAACATCTGG+TGG + chr4_1:82183843-82183862 Msa0577870:CDS 30.0%
! TGATGTTGATTATAAGAAGG+AGG + chr4_1:82184217-82184236 Msa0577870:CDS 30.0%
GGAGAGATTAAATAGCAATT+AGG - chr4_1:82184335-82184354 None:intergenic 30.0%
! TTCACTAGATGTTAGTTTAG+TGG - chr4_1:82184582-82184601 None:intergenic 30.0%
AACATCCAACCAAATATGAA+CGG - chr4_1:82185115-82185134 None:intergenic 30.0%
GTTACGCTATAAATAGACAT+AGG + chr4_1:82185157-82185176 Msa0577870:intron 30.0%
TGAGAAAAAGGAAACAAAAG+AGG + chr4_1:82185382-82185401 Msa0577870:CDS 30.0%
AAGAAGAAACACCATTTCTT+TGG + chr4_1:82185425-82185444 Msa0577870:CDS 30.0%
TGTCATATAGATGTATGGTA+TGG + chr4_1:82185623-82185642 Msa0577870:three_prime_UTR 30.0%
AACAAAACATCATACTCTAC+AGG + chr4_1:82183675-82183694 Msa0577870:CDS 30.0%
! TCATATGGTAATGACAATTC+TGG + chr4_1:82183777-82183796 Msa0577870:CDS 30.0%
TCTAATAATGAAACATCTGG+TGG + chr4_1:82183843-82183862 Msa0577870:CDS 30.0%
! TGATGTTGATTATAAGAAGG+AGG + chr4_1:82184217-82184236 Msa0577870:CDS 30.0%
GGAGAGATTAAATAGCAATT+AGG - chr4_1:82184335-82184354 None:intergenic 30.0%
! TTCACTAGATGTTAGTTTAG+TGG - chr4_1:82184582-82184601 None:intergenic 30.0%
AACATCCAACCAAATATGAA+CGG - chr4_1:82185115-82185134 None:intergenic 30.0%
GTTACGCTATAAATAGACAT+AGG + chr4_1:82185157-82185176 Msa0577870:intron 30.0%
TGAGAAAAAGGAAACAAAAG+AGG + chr4_1:82185382-82185401 Msa0577870:CDS 30.0%
AAGAAGAAACACCATTTCTT+TGG + chr4_1:82185425-82185444 Msa0577870:CDS 30.0%
TGTCATATAGATGTATGGTA+TGG + chr4_1:82185623-82185642 Msa0577870:three_prime_UTR 30.0%
! AGCATGATGATGATGATAGT+AGG + chr4_1:82183628-82183647 Msa0577870:CDS 35.0%
! TATGGTAATGACAATTCTGG+TGG + chr4_1:82183780-82183799 Msa0577870:CDS 35.0%
AATGATTCTCTCAAACATCG+TGG - chr4_1:82184833-82184852 None:intergenic 35.0%
! TGCATTAACCACTTTGTTGT+TGG + chr4_1:82184931-82184950 Msa0577870:intron 35.0%
TGTAATCTCCAACAACAAAG+TGG - chr4_1:82184942-82184961 None:intergenic 35.0%
TTGATTGGACCGTTCATATT+TGG + chr4_1:82185103-82185122 Msa0577870:intron 35.0%
GTTCATATTTGGTTGGATGT+TGG + chr4_1:82185114-82185133 Msa0577870:intron 35.0%
ATATTTGGTTGGATGTTGGT+AGG + chr4_1:82185118-82185137 Msa0577870:intron 35.0%
CATATGTTCAGCCAAAGAAA+TGG - chr4_1:82185439-82185458 None:intergenic 35.0%
!! CTTGGTGTCATATAGATGTA+TGG + chr4_1:82185618-82185637 Msa0577870:three_prime_UTR 35.0%
! AGCATGATGATGATGATAGT+AGG + chr4_1:82183628-82183647 Msa0577870:CDS 35.0%
! TATGGTAATGACAATTCTGG+TGG + chr4_1:82183780-82183799 Msa0577870:CDS 35.0%
AATGATTCTCTCAAACATCG+TGG - chr4_1:82184833-82184852 None:intergenic 35.0%
! TGCATTAACCACTTTGTTGT+TGG + chr4_1:82184931-82184950 Msa0577870:intron 35.0%
TGTAATCTCCAACAACAAAG+TGG - chr4_1:82184942-82184961 None:intergenic 35.0%
TTGATTGGACCGTTCATATT+TGG + chr4_1:82185103-82185122 Msa0577870:intron 35.0%
GTTCATATTTGGTTGGATGT+TGG + chr4_1:82185114-82185133 Msa0577870:intron 35.0%
ATATTTGGTTGGATGTTGGT+AGG + chr4_1:82185118-82185137 Msa0577870:intron 35.0%
CATATGTTCAGCCAAAGAAA+TGG - chr4_1:82185439-82185458 None:intergenic 35.0%
!! CTTGGTGTCATATAGATGTA+TGG + chr4_1:82185618-82185637 Msa0577870:three_prime_UTR 35.0%
CATCATCATGCTTCTTGTGA+TGG - chr4_1:82183620-82183639 None:intergenic 40.0%
TAACCACTGTCAGTGTCTAT+AGG - chr4_1:82183654-82183673 None:intergenic 40.0%
ACAGGTGATGACTATGATTC+TGG + chr4_1:82183693-82183712 Msa0577870:CDS 40.0%
TTATTGTAACCACCACCAGA+TGG - chr4_1:82183753-82183772 None:intergenic 40.0%
AATGAAACATCTGGTGGCTA+TGG + chr4_1:82183849-82183868 Msa0577870:CDS 40.0%
TCTGACACTAAAACAACCAC+TGG + chr4_1:82184017-82184036 Msa0577870:CDS 40.0%
TCTGACACTAAAACAACCAC+TGG + chr4_1:82184017-82184036 Msa0577870:CDS 40.0%
GAGTCATGCTCAACAAGATT+AGG - chr4_1:82184774-82184793 None:intergenic 40.0%
CGCCCTAAGATTTCCATAAT+AGG + chr4_1:82184903-82184922 Msa0577870:intron 40.0%
TTGGACCGTTCATATTTGGT+TGG + chr4_1:82185107-82185126 Msa0577870:intron 40.0%
TTTCTCATGATGCTCATGGA+AGG - chr4_1:82185369-82185388 None:intergenic 40.0%
! CCTTTTTCTCATGATGCTCA+TGG - chr4_1:82185373-82185392 None:intergenic 40.0%
CCATGAGCATCATGAGAAAA+AGG + chr4_1:82185370-82185389 Msa0577870:CDS 40.0%
GAGGAAGAAGAAGAAGTTCA+TGG + chr4_1:82185401-82185420 Msa0577870:CDS 40.0%
! ATCTTCCAGTTTGCTTTGAG+TGG + chr4_1:82185577-82185596 Msa0577870:three_prime_UTR 40.0%
TTTGGAGAATGTTTCCAGCT+TGG + chr4_1:82185600-82185619 Msa0577870:three_prime_UTR 40.0%
ACATCTATATGACACCAAGC+TGG - chr4_1:82185617-82185636 None:intergenic 40.0%
CATCATCATGCTTCTTGTGA+TGG - chr4_1:82183620-82183639 None:intergenic 40.0%
TAACCACTGTCAGTGTCTAT+AGG - chr4_1:82183654-82183673 None:intergenic 40.0%
ACAGGTGATGACTATGATTC+TGG + chr4_1:82183693-82183712 Msa0577870:CDS 40.0%
TTATTGTAACCACCACCAGA+TGG - chr4_1:82183753-82183772 None:intergenic 40.0%
AATGAAACATCTGGTGGCTA+TGG + chr4_1:82183849-82183868 Msa0577870:CDS 40.0%
TCTGACACTAAAACAACCAC+TGG + chr4_1:82184017-82184036 Msa0577870:CDS 40.0%
TCTGACACTAAAACAACCAC+TGG + chr4_1:82184017-82184036 Msa0577870:CDS 40.0%
GAGTCATGCTCAACAAGATT+AGG - chr4_1:82184774-82184793 None:intergenic 40.0%
CGCCCTAAGATTTCCATAAT+AGG + chr4_1:82184903-82184922 Msa0577870:intron 40.0%
TTGGACCGTTCATATTTGGT+TGG + chr4_1:82185107-82185126 Msa0577870:intron 40.0%
TTTCTCATGATGCTCATGGA+AGG - chr4_1:82185369-82185388 None:intergenic 40.0%
! CCTTTTTCTCATGATGCTCA+TGG - chr4_1:82185373-82185392 None:intergenic 40.0%
CCATGAGCATCATGAGAAAA+AGG + chr4_1:82185370-82185389 Msa0577870:CDS 40.0%
GAGGAAGAAGAAGAAGTTCA+TGG + chr4_1:82185401-82185420 Msa0577870:CDS 40.0%
! ATCTTCCAGTTTGCTTTGAG+TGG + chr4_1:82185577-82185596 Msa0577870:three_prime_UTR 40.0%
TTTGGAGAATGTTTCCAGCT+TGG + chr4_1:82185600-82185619 Msa0577870:three_prime_UTR 40.0%
ACATCTATATGACACCAAGC+TGG - chr4_1:82185617-82185636 None:intergenic 40.0%
! CATGCTTCTTGTGATGGAAG+AGG - chr4_1:82183614-82183633 None:intergenic 45.0%
TACAATGATGACCAGCCATC+TGG + chr4_1:82183735-82183754 Msa0577870:CDS 45.0%
! TCTGGTGGTGACTATGAAAC+TGG + chr4_1:82183795-82183814 Msa0577870:CDS 45.0%
! TATGGTGCCAAAACAACCAC+TGG + chr4_1:82183867-82183886 Msa0577870:CDS 45.0%
CTCTGACACCAAAACAACCA+CGG + chr4_1:82183965-82183984 Msa0577870:CDS 45.0%
TCTGACACCAAAACAACCAC+GGG + chr4_1:82183966-82183985 Msa0577870:CDS 45.0%
GACACTAAAACAACCACTGG+CGG + chr4_1:82184020-82184039 Msa0577870:CDS 45.0%
GACACTAAAACAACCACTGG+TGG + chr4_1:82184020-82184039 Msa0577870:CDS 45.0%
ACTAAAACAACCACTGGTGG+CGG + chr4_1:82184071-82184090 Msa0577870:CDS 45.0%
TCTGACACCAAAACAACCAC+TGG + chr4_1:82183966-82183985 Msa0577870:CDS 45.0%
! CAAGATGCTCATGTTTGCTG+TGG - chr4_1:82184250-82184269 None:intergenic 45.0%
CACAGCAAACATGAGCATCT+TGG + chr4_1:82184248-82184267 Msa0577870:CDS 45.0%
CATGAGCATCTTGGTGAGTT+AGG + chr4_1:82184257-82184276 Msa0577870:CDS 45.0%
AAACATCGTGGAACGACTCA+AGG - chr4_1:82184821-82184840 None:intergenic 45.0%
CCAAACCACTCAAAGCAAAC+TGG - chr4_1:82185585-82185604 None:intergenic 45.0%
! CCAGTTTGCTTTGAGTGGTT+TGG + chr4_1:82185582-82185601 Msa0577870:three_prime_UTR 45.0%
! CATGCTTCTTGTGATGGAAG+AGG - chr4_1:82183614-82183633 None:intergenic 45.0%
TACAATGATGACCAGCCATC+TGG + chr4_1:82183735-82183754 Msa0577870:CDS 45.0%
! TCTGGTGGTGACTATGAAAC+TGG + chr4_1:82183795-82183814 Msa0577870:CDS 45.0%
! TATGGTGCCAAAACAACCAC+TGG + chr4_1:82183867-82183886 Msa0577870:CDS 45.0%
CTCTGACACCAAAACAACCA+CGG + chr4_1:82183965-82183984 Msa0577870:CDS 45.0%
TCTGACACCAAAACAACCAC+GGG + chr4_1:82183966-82183985 Msa0577870:CDS 45.0%
GACACTAAAACAACCACTGG+CGG + chr4_1:82184020-82184039 Msa0577870:CDS 45.0%
GACACTAAAACAACCACTGG+TGG + chr4_1:82184020-82184039 Msa0577870:CDS 45.0%
ACTAAAACAACCACTGGTGG+CGG + chr4_1:82184071-82184090 Msa0577870:CDS 45.0%
TCTGACACCAAAACAACCAC+TGG + chr4_1:82183966-82183985 Msa0577870:CDS 45.0%
! CAAGATGCTCATGTTTGCTG+TGG - chr4_1:82184250-82184269 None:intergenic 45.0%
CACAGCAAACATGAGCATCT+TGG + chr4_1:82184248-82184267 Msa0577870:CDS 45.0%
CATGAGCATCTTGGTGAGTT+AGG + chr4_1:82184257-82184276 Msa0577870:CDS 45.0%
AAACATCGTGGAACGACTCA+AGG - chr4_1:82184821-82184840 None:intergenic 45.0%
CCAAACCACTCAAAGCAAAC+TGG - chr4_1:82185585-82185604 None:intergenic 45.0%
! CCAGTTTGCTTTGAGTGGTT+TGG + chr4_1:82185582-82185601 Msa0577870:three_prime_UTR 45.0%
!! TTAAAAATAAATTTGTAAAA+TGG - chr4_1:82184648-82184667 None:intergenic 5.0%
!! TTAAAAATAAATTTGTAAAA+TGG - chr4_1:82184648-82184667 None:intergenic 5.0%
! TCTTGTGATGGAAGAGGCCA+CGG - chr4_1:82183608-82183627 None:intergenic 50.0%
AGGCCTATAGACACTGACAG+TGG + chr4_1:82183648-82183667 Msa0577870:CDS 50.0%
AATGATGACCAGCCATCTGG+TGG + chr4_1:82183738-82183757 Msa0577870:CDS 50.0%
GACTCTGACACCAAAACCAC+TGG + chr4_1:82183915-82183934 Msa0577870:CDS 50.0%
TCTGACACCAAAACCACTGG+TGG + chr4_1:82183918-82183937 Msa0577870:CDS 50.0%
!! AAAACCACTGGTGGTGGCTA+CGG + chr4_1:82183927-82183946 Msa0577870:CDS 50.0%
AAAACAACCACTGGCGGCTA+CGG + chr4_1:82184026-82184045 Msa0577870:CDS 50.0%
GACACCAAAACAACCACTGG+AGG + chr4_1:82184119-82184138 Msa0577870:CDS 50.0%
ACCAAAACAACCACTGGAGG+CGG + chr4_1:82184122-82184141 Msa0577870:CDS 50.0%
TCTGACACCAAAACCACCAC+CGG + chr4_1:82184167-82184186 Msa0577870:CDS 50.0%
ATCGTCACCATAACCACCAC+CGG - chr4_1:82184189-82184208 None:intergenic 50.0%
!! AGCTGCTGGTGGTTTTGCTT+TGG + chr4_1:82184286-82184305 Msa0577870:CDS 50.0%
AAGACCCAGAGAATGCTCAC+AGG + chr4_1:82185288-82185307 Msa0577870:CDS 50.0%
TGTGCCTGTGAGCATTCTCT+GGG - chr4_1:82185295-82185314 None:intergenic 50.0%
TTGTGCCTGTGAGCATTCTC+TGG - chr4_1:82185296-82185315 None:intergenic 50.0%
! TCTTGTGATGGAAGAGGCCA+CGG - chr4_1:82183608-82183627 None:intergenic 50.0%
AGGCCTATAGACACTGACAG+TGG + chr4_1:82183648-82183667 Msa0577870:CDS 50.0%
AATGATGACCAGCCATCTGG+TGG + chr4_1:82183738-82183757 Msa0577870:CDS 50.0%
GACTCTGACACCAAAACCAC+TGG + chr4_1:82183915-82183934 Msa0577870:CDS 50.0%
TCTGACACCAAAACCACTGG+TGG + chr4_1:82183918-82183937 Msa0577870:CDS 50.0%
!! AAAACCACTGGTGGTGGCTA+CGG + chr4_1:82183927-82183946 Msa0577870:CDS 50.0%
AAAACAACCACTGGCGGCTA+CGG + chr4_1:82184026-82184045 Msa0577870:CDS 50.0%
GACACCAAAACAACCACTGG+AGG + chr4_1:82184119-82184138 Msa0577870:CDS 50.0%
ACCAAAACAACCACTGGAGG+CGG + chr4_1:82184122-82184141 Msa0577870:CDS 50.0%
TCTGACACCAAAACCACCAC+CGG + chr4_1:82184167-82184186 Msa0577870:CDS 50.0%
ATCGTCACCATAACCACCAC+CGG - chr4_1:82184189-82184208 None:intergenic 50.0%
!! AGCTGCTGGTGGTTTTGCTT+TGG + chr4_1:82184286-82184305 Msa0577870:CDS 50.0%
AAGACCCAGAGAATGCTCAC+AGG + chr4_1:82185288-82185307 Msa0577870:CDS 50.0%
TGTGCCTGTGAGCATTCTCT+GGG - chr4_1:82185295-82185314 None:intergenic 50.0%
TTGTGCCTGTGAGCATTCTC+TGG - chr4_1:82185296-82185315 None:intergenic 50.0%
GATGAAGAGAACCGTAGCCG+TGG + chr4_1:82183588-82183607 Msa0577870:CDS 55.0%
TGTAACCACCACCAGATGGC+TGG - chr4_1:82183749-82183768 None:intergenic 55.0%
GGTGCCAAAACAACCACTGG+TGG + chr4_1:82183870-82183889 Msa0577870:CDS 55.0%
GCCAAAACAACCACTGGTGG+CGG + chr4_1:82183873-82183892 Msa0577870:CDS 55.0%
GACACCAAAACCACTGGTGG+TGG + chr4_1:82183921-82183940 Msa0577870:CDS 55.0%
! GTAGCCACCACCAGTGGTTT+TGG - chr4_1:82183928-82183947 None:intergenic 55.0%
GACACCAAAACAACCACGGG+TGG + chr4_1:82183969-82183988 Msa0577870:CDS 55.0%
ACCAAAACAACCACGGGTGG+CGG + chr4_1:82183972-82183991 Msa0577870:CDS 55.0%
!! GGCGGATATGGTGGTGGTTA+TGG + chr4_1:82183990-82184009 Msa0577870:CDS 55.0%
AGTTGCAGAAGCAGCTGCAG+TGG + chr4_1:82185328-82185347 Msa0577870:CDS 55.0%
GTTGCAGAAGCAGCTGCAGT+GGG + chr4_1:82185329-82185348 Msa0577870:CDS 55.0%
GATGAAGAGAACCGTAGCCG+TGG + chr4_1:82183588-82183607 Msa0577870:CDS 55.0%
TGTAACCACCACCAGATGGC+TGG - chr4_1:82183749-82183768 None:intergenic 55.0%
GGTGCCAAAACAACCACTGG+TGG + chr4_1:82183870-82183889 Msa0577870:CDS 55.0%
GCCAAAACAACCACTGGTGG+CGG + chr4_1:82183873-82183892 Msa0577870:CDS 55.0%
GACACCAAAACCACTGGTGG+TGG + chr4_1:82183921-82183940 Msa0577870:CDS 55.0%
! GTAGCCACCACCAGTGGTTT+TGG - chr4_1:82183928-82183947 None:intergenic 55.0%
GACACCAAAACAACCACGGG+TGG + chr4_1:82183969-82183988 Msa0577870:CDS 55.0%
ACCAAAACAACCACGGGTGG+CGG + chr4_1:82183972-82183991 Msa0577870:CDS 55.0%
!! GGCGGATATGGTGGTGGTTA+TGG + chr4_1:82183990-82184009 Msa0577870:CDS 55.0%
AGTTGCAGAAGCAGCTGCAG+TGG + chr4_1:82185328-82185347 Msa0577870:CDS 55.0%
GTTGCAGAAGCAGCTGCAGT+GGG + chr4_1:82185329-82185348 Msa0577870:CDS 55.0%
GATGGAAGAGGCCACGGCTA+CGG - chr4_1:82183602-82183621 None:intergenic 60.0%
GATGACCAGCCATCTGGTGG+TGG + chr4_1:82183741-82183760 Msa0577870:CDS 60.0%
! GCCGCCACCAGTGGTTGTTT+TGG - chr4_1:82183877-82183896 None:intergenic 60.0%
!! ACAACCACTGGTGGCGGCTA+CGG + chr4_1:82183879-82183898 Msa0577870:CDS 60.0%
! GGTGGCTACGGTGGTGGTTA+TGG + chr4_1:82183939-82183958 Msa0577870:CDS 60.0%
! TCCGCCACCCGTGGTTGTTT+TGG - chr4_1:82183976-82183995 None:intergenic 60.0%
!! ACAACCACGGGTGGCGGATA+TGG + chr4_1:82183978-82183997 Msa0577870:CDS 60.0%
!! ACAACCACTGGTGGCGGCTA+CGG + chr4_1:82183879-82183898 Msa0577870:CDS 60.0%
! GCCGCCTCCAGTGGTTGTTT+TGG - chr4_1:82184126-82184145 None:intergenic 60.0%
ACAACCACTGGAGGCGGCTA+CGG + chr4_1:82184128-82184147 Msa0577870:CDS 60.0%
GACACCAAAACCACCACCGG+TGG + chr4_1:82184170-82184189 Msa0577870:CDS 60.0%
ACCAAAACCACCACCGGTGG+TGG + chr4_1:82184173-82184192 Msa0577870:CDS 60.0%
!! ACCACCACCGGTGGTGGTTT+TGG - chr4_1:82184177-82184196 None:intergenic 60.0%
! ACCACCACCGGTGGTGGTTA+TGG + chr4_1:82184179-82184198 Msa0577870:CDS 60.0%
ACCATAACCACCACCGGTGG+TGG - chr4_1:82184183-82184202 None:intergenic 60.0%
GTCACCATAACCACCACCGG+TGG - chr4_1:82184186-82184205 None:intergenic 60.0%
! GAGTTAGGTGCTGCAGCTGC+TGG + chr4_1:82184272-82184291 Msa0577870:CDS 60.0%
! TTAGGTGCTGCAGCTGCTGG+TGG + chr4_1:82184275-82184294 Msa0577870:CDS 60.0%
GAAGCAGCTGCAGTGGGATC+TGG + chr4_1:82185335-82185354 Msa0577870:CDS 60.0%
CAGCTGCAGTGGGATCTGGT+GGG + chr4_1:82185339-82185358 Msa0577870:CDS 60.0%
GATGGAAGAGGCCACGGCTA+CGG - chr4_1:82183602-82183621 None:intergenic 60.0%
GATGACCAGCCATCTGGTGG+TGG + chr4_1:82183741-82183760 Msa0577870:CDS 60.0%
! GCCGCCACCAGTGGTTGTTT+TGG - chr4_1:82183877-82183896 None:intergenic 60.0%
!! ACAACCACTGGTGGCGGCTA+CGG + chr4_1:82183879-82183898 Msa0577870:CDS 60.0%
! GGTGGCTACGGTGGTGGTTA+TGG + chr4_1:82183939-82183958 Msa0577870:CDS 60.0%
! TCCGCCACCCGTGGTTGTTT+TGG - chr4_1:82183976-82183995 None:intergenic 60.0%
!! ACAACCACGGGTGGCGGATA+TGG + chr4_1:82183978-82183997 Msa0577870:CDS 60.0%
!! ACAACCACTGGTGGCGGCTA+CGG + chr4_1:82183879-82183898 Msa0577870:CDS 60.0%
! GCCGCCTCCAGTGGTTGTTT+TGG - chr4_1:82184126-82184145 None:intergenic 60.0%
ACAACCACTGGAGGCGGCTA+CGG + chr4_1:82184128-82184147 Msa0577870:CDS 60.0%
GACACCAAAACCACCACCGG+TGG + chr4_1:82184170-82184189 Msa0577870:CDS 60.0%
ACCAAAACCACCACCGGTGG+TGG + chr4_1:82184173-82184192 Msa0577870:CDS 60.0%
!! ACCACCACCGGTGGTGGTTT+TGG - chr4_1:82184177-82184196 None:intergenic 60.0%
! ACCACCACCGGTGGTGGTTA+TGG + chr4_1:82184179-82184198 Msa0577870:CDS 60.0%
ACCATAACCACCACCGGTGG+TGG - chr4_1:82184183-82184202 None:intergenic 60.0%
GTCACCATAACCACCACCGG+TGG - chr4_1:82184186-82184205 None:intergenic 60.0%
! GAGTTAGGTGCTGCAGCTGC+TGG + chr4_1:82184272-82184291 Msa0577870:CDS 60.0%
! TTAGGTGCTGCAGCTGCTGG+TGG + chr4_1:82184275-82184294 Msa0577870:CDS 60.0%
GAAGCAGCTGCAGTGGGATC+TGG + chr4_1:82185335-82185354 Msa0577870:CDS 60.0%
CAGCTGCAGTGGGATCTGGT+GGG + chr4_1:82185339-82185358 Msa0577870:CDS 60.0%
!! ACCACTGGTGGTGGCTACGG+TGG + chr4_1:82183930-82183949 Msa0577870:CDS 65.0%
ACCACCGTAGCCACCACCAG+TGG - chr4_1:82183934-82183953 None:intergenic 65.0%
!! ACTGGTGGTGGCTACGGTGG+TGG + chr4_1:82183933-82183952 Msa0577870:CDS 65.0%
!! ACCACGGGTGGCGGATATGG+TGG + chr4_1:82183981-82184000 Msa0577870:CDS 65.0%
ACCACCATATCCGCCACCCG+TGG - chr4_1:82183985-82184004 None:intergenic 65.0%
!! ACGGGTGGCGGATATGGTGG+TGG + chr4_1:82183984-82184003 Msa0577870:CDS 65.0%
ACAACCACTGGCGGCTACGG+TGG + chr4_1:82184029-82184048 Msa0577870:CDS 65.0%
! GGCGGCTACGGTGGTGGTTA+TGG + chr4_1:82184038-82184057 Msa0577870:CDS 65.0%
! GGCGGCTACGGTGGTGGTTA+TGG + chr4_1:82184038-82184057 Msa0577870:CDS 65.0%
!! GGCGGCTACGGTGGTGGATA+TGG + chr4_1:82184140-82184159 Msa0577870:CDS 65.0%
GCAGCTGCAGTGGGATCTGG+TGG + chr4_1:82185338-82185357 Msa0577870:CDS 65.0%
!! ACCACTGGTGGTGGCTACGG+TGG + chr4_1:82183930-82183949 Msa0577870:CDS 65.0%
ACCACCGTAGCCACCACCAG+TGG - chr4_1:82183934-82183953 None:intergenic 65.0%
!! ACTGGTGGTGGCTACGGTGG+TGG + chr4_1:82183933-82183952 Msa0577870:CDS 65.0%
!! ACCACGGGTGGCGGATATGG+TGG + chr4_1:82183981-82184000 Msa0577870:CDS 65.0%
ACCACCATATCCGCCACCCG+TGG - chr4_1:82183985-82184004 None:intergenic 65.0%
!! ACGGGTGGCGGATATGGTGG+TGG + chr4_1:82183984-82184003 Msa0577870:CDS 65.0%
ACAACCACTGGCGGCTACGG+TGG + chr4_1:82184029-82184048 Msa0577870:CDS 65.0%
! GGCGGCTACGGTGGTGGTTA+TGG + chr4_1:82184038-82184057 Msa0577870:CDS 65.0%
! GGCGGCTACGGTGGTGGTTA+TGG + chr4_1:82184038-82184057 Msa0577870:CDS 65.0%
!! GGCGGCTACGGTGGTGGATA+TGG + chr4_1:82184140-82184159 Msa0577870:CDS 65.0%
GCAGCTGCAGTGGGATCTGG+TGG + chr4_1:82185338-82185357 Msa0577870:CDS 65.0%
!! ACCACTGGTGGCGGCTACGG+CGG + chr4_1:82183882-82183901 Msa0577870:CDS 70.0%
GGCGGCTACGGCGGTGGTTA+TGG + chr4_1:82183891-82183910 Msa0577870:CDS 70.0%
ACCACTGGCGGCTACGGTGG+TGG + chr4_1:82184032-82184051 Msa0577870:CDS 70.0%
ACCACCACCGTAGCCGCCAG+TGG - chr4_1:82184036-82184055 None:intergenic 70.0%
!! ACCACTGGTGGCGGCTACGG+TGG + chr4_1:82183882-82183901 Msa0577870:CDS 70.0%
ACCACCGTAGCCGCCACCAG+TGG - chr4_1:82184084-82184103 None:intergenic 70.0%
!! ACTGGTGGCGGCTACGGTGG+TGG + chr4_1:82184083-82184102 Msa0577870:CDS 70.0%
ACCACTGGAGGCGGCTACGG+TGG + chr4_1:82184131-82184150 Msa0577870:CDS 70.0%
ACCACCGTAGCCGCCTCCAG+TGG - chr4_1:82184135-82184154 None:intergenic 70.0%
ACTGGAGGCGGCTACGGTGG+TGG + chr4_1:82184134-82184153 Msa0577870:CDS 70.0%
!! ACCACTGGTGGCGGCTACGG+CGG + chr4_1:82183882-82183901 Msa0577870:CDS 70.0%
GGCGGCTACGGCGGTGGTTA+TGG + chr4_1:82183891-82183910 Msa0577870:CDS 70.0%
ACCACTGGCGGCTACGGTGG+TGG + chr4_1:82184032-82184051 Msa0577870:CDS 70.0%
ACCACCACCGTAGCCGCCAG+TGG - chr4_1:82184036-82184055 None:intergenic 70.0%
!! ACCACTGGTGGCGGCTACGG+TGG + chr4_1:82183882-82183901 Msa0577870:CDS 70.0%
ACCACCGTAGCCGCCACCAG+TGG - chr4_1:82184084-82184103 None:intergenic 70.0%
!! ACTGGTGGCGGCTACGGTGG+TGG + chr4_1:82184083-82184102 Msa0577870:CDS 70.0%
ACCACTGGAGGCGGCTACGG+TGG + chr4_1:82184131-82184150 Msa0577870:CDS 70.0%
ACCACCGTAGCCGCCTCCAG+TGG - chr4_1:82184135-82184154 None:intergenic 70.0%
ACTGGAGGCGGCTACGGTGG+TGG + chr4_1:82184134-82184153 Msa0577870:CDS 70.0%
ACCGCCGTAGCCGCCACCAG+TGG - chr4_1:82183886-82183905 None:intergenic 75.0%
!! ACTGGTGGCGGCTACGGCGG+TGG + chr4_1:82183885-82183904 Msa0577870:CDS 75.0%
ACCGCCGTAGCCGCCACCAG+TGG - chr4_1:82183886-82183905 None:intergenic 75.0%
!! ACTGGTGGCGGCTACGGCGG+TGG + chr4_1:82183885-82183904 Msa0577870:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 82183582 82185762 82183582 ID=Msa0577870;Name=Msa0577870
chr4_1 mRNA 82183582 82185762 82183582 ID=Msa0577870-mRNA-1;Parent=Msa0577870;Name=Msa0577870-mRNA-1;_AED=0.00;_eAED=0.07;_QI=0|1|0.5|1|1|1|2|311|303
chr4_1 exon 82183582 82184307 82183582 ID=Msa0577870-mRNA-1:exon:29667;Parent=Msa0577870-mRNA-1
chr4_1 exon 82185266 82185762 82185266 ID=Msa0577870-mRNA-1:exon:29668;Parent=Msa0577870-mRNA-1
chr4_1 CDS 82183582 82184307 82183582 ID=Msa0577870-mRNA-1:cds;Parent=Msa0577870-mRNA-1
chr4_1 CDS 82185266 82185451 82185266 ID=Msa0577870-mRNA-1:cds;Parent=Msa0577870-mRNA-1
chr4_1 three_prime_UTR 82185452 82185762 82185452 ID=Msa0577870-mRNA-1:three_prime_utr;Parent=Msa0577870-mRNA-1
Gene Sequence

>Msa0577870

ATGTCTGATGAAGAGAACCGTAGCCGTGGCCTCTTCCATCACAAGAAGCATGATGATGATGATAGTAGGCCTATAGACACTGACAGTGGTTACAACAAAACATCATACTCTACAGGTGATGACTATGATTCTGGTTATAACAAAAAAACATCGTACAATGATGACCAGCCATCTGGTGGTGGTTACAATAAAACATCATATGGTAATGACAATTCTGGTGGTGACTATGAAACTGGTTACAATAAGAACACTGATAATTACTCTAATAATGAAACATCTGGTGGCTATGGTGCCAAAACAACCACTGGTGGCGGCTACGGCGGTGGTTATGGTGACTCTGACACCAAAACCACTGGTGGTGGCTACGGTGGTGGTTATGGTGACTCTGACACCAAAACAACCACGGGTGGCGGATATGGTGGTGGTTATGGTGACTCTGACACTAAAACAACCACTGGCGGCTACGGTGGTGGTTATGGTGACTCTGACACTAAAACAACCACTGGTGGCGGCTACGGTGGTGGTTATGGTGACTCTGACACCAAAACAACCACTGGAGGCGGCTACGGTGGTGGATATGGTGACTCTGACACCAAAACCACCACCGGTGGTGGTTATGGTGACGATCGTCGTGATGATGTTGATTATAAGAAGGAGGAGAAACACCACAGCAAACATGAGCATCTTGGTGAGTTAGGTGCTGCAGCTGCTGGTGGTTTTGCTTTGTATGAGAAGCAAAAGTCAGAGAAAGACCCAGAGAATGCTCACAGGCACAAGACAGAAGAAGAAGTTGCAGAAGCAGCTGCAGTGGGATCTGGTGGGTTCGCCTTCCATGAGCATCATGAGAAAAAGGAAACAAAAGAGGAAGAAGAAGAAGTTCATGGAAAGAAGAAACACCATTTCTTTGGCTGA

Protein sequence

>Msa0577870

MSDEENRSRGLFHHKKHDDDDSRPIDTDSGYNKTSYSTGDDYDSGYNKKTSYNDDQPSGGGYNKTSYGNDNSGGDYETGYNKNTDNYSNNETSGGYGAKTTTGGGYGGGYGDSDTKTTGGGYGGGYGDSDTKTTTGGGYGGGYGDSDTKTTTGGYGGGYGDSDTKTTTGGGYGGGYGDSDTKTTTGGGYGGGYGDSDTKTTTGGGYGDDRRDDVDYKKEEKHHSKHEHLGELGAAAAGGFALYEKQKSEKDPENAHRHKTEEEVAEAAAVGSGGFAFHEHHEKKETKEEEEEVHGKKKHHFFG*