AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373140 MtrunA17_Chr3g0122081 99.222 771 6 0 1 771 1 771 0.0 1588
Msa0373140 MtrunA17_Chr8g0338351 64.005 764 267 5 8 770 7 763 0.0 1025
Msa0373140 MtrunA17_Chr1g0206271 44.171 772 399 13 4 770 1 745 0.0 635
Msa0373140 MtrunA17_Chr6g0471961 68.276 145 37 2 543 679 1 144 1.45e-61 204
Msa0373140 MtrunA17_Chr7g0270801 23.197 707 435 23 56 734 182 808 9.59e-32 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373140 AT1G05520.1 78.907 787 146 4 1 771 1 783 0.0 1290
Msa0373140 AT3G23660.1 79.076 779 141 5 1 771 1 765 0.0 1275
Msa0373140 AT3G23660.2 76.522 805 141 6 1 771 1 791 0.0 1262
Msa0373140 AT4G14160.2 77.477 777 164 4 1 771 1 772 0.0 1245
Msa0373140 AT4G14160.1 77.378 778 164 5 1 771 1 773 0.0 1241
Msa0373140 AT4G14160.3 75.248 606 139 4 1 600 1 601 0.0 931
Msa0373140 AT2G21630.1 58.039 765 306 9 10 770 8 761 0.0 891
Msa0373140 AT5G43670.1 43.317 808 390 11 10 770 7 793 0.0 675
Msa0373140 AT4G01810.3 22.772 707 438 23 56 734 201 827 2.11e-34 141
Msa0373140 AT4G01810.1 22.772 707 438 23 56 734 201 827 2.11e-34 141
Msa0373140 AT4G01810.2 22.772 707 438 23 56 734 201 827 2.11e-34 141

Find 236 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCTTTGGAAATCTCTT+TGG 0.200075 3_1:+72164767 None:intergenic
TAGAGGAGACTGACAGTTTA+TGG 0.202523 3_1:-72159761 Msa0373140:three_prime_UTR
TTCGCCTCTGTTCTAAGTTT+GGG 0.207149 3_1:-72160876 Msa0373140:CDS
GATTTCCAAAGATCAGATTT+TGG 0.249496 3_1:-72164760 Msa0373140:CDS
AAATCGTGAAACACCGGAAT+TGG 0.258703 3_1:+72164650 None:intergenic
TGGATTCTATACTTTGGTTT+GGG 0.269503 3_1:-72159741 Msa0373140:three_prime_UTR
ATTCGCCTCTGTTCTAAGTT+TGG 0.272083 3_1:-72160877 Msa0373140:CDS
CTCAAAGGAAATCAAAATTC+AGG 0.273413 3_1:-72162234 Msa0373140:CDS
TTGTTCCAAAATCTGATCTT+TGG 0.274830 3_1:+72164755 None:intergenic
ATTCATATGTACGTTGAGTT+TGG 0.276408 3_1:-72159555 Msa0373140:three_prime_UTR
ATGGATTCTATACTTTGGTT+TGG 0.286310 3_1:-72159742 Msa0373140:three_prime_UTR
TTACAACTGCAGCAGTTTCT+TGG 0.303545 3_1:+72161314 None:intergenic
ATCCTTCGGGACTCAGGTTC+AGG 0.304450 3_1:-72164841 Msa0373140:CDS
TAGATATGCTTCTCTGAAAA+TGG 0.316254 3_1:-72161287 Msa0373140:CDS
TCAGGTTCAGGTTCATGAAT+TGG 0.321846 3_1:-72164829 Msa0373140:CDS
CGTTGTAATGAGGTGGAAAA+TGG 0.324821 3_1:+72165075 None:intergenic
TCGGCTCTTGGTAGAGCAAT+TGG 0.333563 3_1:-72164897 Msa0373140:CDS
TTGCTCAGTGCTTGTAATCC+TGG 0.340613 3_1:-72164413 Msa0373140:CDS
TTACCTGATAATGCTCTTGT+TGG 0.353450 3_1:-72164870 Msa0373140:CDS
CAGGTTCAGGTTCATGAATT+GGG 0.353755 3_1:-72164828 Msa0373140:CDS
ACAGGGGAAGGAGGAGGATT+AGG 0.354971 3_1:+72164975 None:intergenic
TTCACTGCTTTCTTAAAGTA+AGG 0.356416 3_1:+72163832 None:intergenic
TGCACACAAACCTGGTGTTC+TGG 0.358942 3_1:+72160427 None:intergenic
GGAGGATTAGGATCGGTATG+AGG 0.359326 3_1:+72164987 None:intergenic
ATCAAAATTCAGGGAATTGT+TGG 0.363724 3_1:-72162224 Msa0373140:CDS
CGAAAGTATGCAGTCTCATC+TGG 0.366629 3_1:+72160664 None:intergenic
TTCATATGTACGTTGAGTTT+GGG 0.367123 3_1:-72159554 Msa0373140:three_prime_UTR
TTGATTTCACCGCTAAGATC+TGG 0.369179 3_1:-72165124 Msa0373140:CDS
GTCGCAGATTGAACATAAAC+TGG 0.370469 3_1:+72160794 None:intergenic
GTTGTCCTGTCTGAAAGTTT+TGG 0.375902 3_1:-72162672 Msa0373140:CDS
CCGATCTCTAATTATTGCTT+GGG 0.380772 3_1:+72160151 None:intergenic
TGGTTCCGTTGATAACAAAA+TGG 0.383931 3_1:+72165095 None:intergenic
ATATCTGGGCCAAAACAAAT+AGG 0.388048 3_1:+72159447 None:intergenic
CGAAGCACTAATTGACCATC+TGG 0.389898 3_1:+72161750 None:intergenic
AATCCAACAAGAGCATTATC+AGG 0.393335 3_1:+72164867 None:intergenic
GTGAAATCAACGCGGGAGTA+AGG 0.395323 3_1:+72165137 None:intergenic
GCTGCCAGGAGACCTATTAA+AGG 0.395909 3_1:-72164708 Msa0373140:CDS
ACCGATCTCTAATTATTGCT+TGG 0.397173 3_1:+72160150 None:intergenic
CTTTGAGCATCTGCAAAGGC+TGG 0.397327 3_1:-72159808 Msa0373140:CDS
CTATCATCTGCCCTCAAGAT+TGG 0.398230 3_1:+72159781 None:intergenic
GTGCTTGTAATCCTGGGACT+GGG 0.398443 3_1:-72164406 Msa0373140:CDS
TTTGTGAAGTAAGCTTATAC+AGG 0.401961 3_1:-72159281 Msa0373140:three_prime_UTR
GGTCGTTTGCCAGGTGGAAC+AGG 0.406022 3_1:+72164476 None:intergenic
TTGCCCAACATAACCTTGTA+AGG 0.406762 3_1:+72161879 None:intergenic
CCGCCAGGACCACCTTTAAT+AGG 0.408601 3_1:+72164696 None:intergenic
ACTGCCTGCACCAGCATTGT+TGG 0.412650 3_1:-72160563 Msa0373140:CDS
ATGGTCTTATTGCAGTTACC+AGG 0.412803 3_1:-72161775 Msa0373140:intron
GAGAGGGGAACACAACAATA+TGG 0.415405 3_1:-72162012 Msa0373140:CDS
ACTTTCGCATGTTGTTAAAC+CGG 0.419078 3_1:-72160648 Msa0373140:CDS
GAGGATGGGGAGCAATCTCT+TGG 0.420007 3_1:-72162612 Msa0373140:CDS
AGTGCTTGTAATCCTGGGAC+TGG 0.428437 3_1:-72164407 Msa0373140:CDS
TGCTCAGTGCTTGTAATCCT+GGG 0.433431 3_1:-72164412 Msa0373140:CDS
GGCGAGTGGGATAACGCATT+TGG 0.433530 3_1:+72165250 None:intergenic
TCGGTTTCCTGTTCCTAGAT+TGG 0.434541 3_1:-72160132 Msa0373140:CDS
AATCGTGAAACACCGGAATT+GGG 0.437601 3_1:+72164651 None:intergenic
ATCTGGATTAATTTACATAG+TGG 0.437816 3_1:-72159406 Msa0373140:three_prime_UTR
CGGCTCTTGGTAGAGCAATT+GGG 0.438079 3_1:-72164896 Msa0373140:CDS
TCCGTATGACATGGAACGTC+TGG 0.441775 3_1:-72165295 Msa0373140:CDS
TGCAAAACAGCTGGTTAACC+AGG 0.443952 3_1:-72163794 Msa0373140:CDS
GTTTAACATAATTGTGCAAA+GGG 0.445060 3_1:-72165474 Msa0373140:five_prime_UTR
TGGGGCTAGAATTATAGCTT+TGG 0.450259 3_1:-72164387 Msa0373140:CDS
CATCGAGCAGGTCGTTTGCC+AGG 0.456521 3_1:+72164467 None:intergenic
TGATCACACACTACCAATCT+AGG 0.458169 3_1:+72160119 None:intergenic
AATAGCTCAATGGCGCAACT+TGG 0.459058 3_1:-72160464 Msa0373140:CDS
AAAGGTGGTCCTGGCGGTAT+TGG 0.459360 3_1:-72164690 Msa0373140:CDS
AGGGTTGAGAATGGAGGTGC+AGG 0.459989 3_1:+72165157 None:intergenic
TTTGGGCATTGCGGAAAGAA+AGG 0.462055 3_1:-72159537 Msa0373140:three_prime_UTR
AGAGATTAATTATCTCAAAT+CGG 0.462983 3_1:-72164916 Msa0373140:CDS
GGTGGTCCTGGCGGTATTGG+TGG 0.463044 3_1:-72164687 Msa0373140:CDS
CACACTACCAATCTAGGAAC+AGG 0.463957 3_1:+72160125 None:intergenic
ATTTGATTGCACACGGTGGT+TGG 0.465256 3_1:-72160911 Msa0373140:CDS
TCCATAAAATAAAATTCGAC+AGG 0.465257 3_1:+72159589 None:intergenic
AATTATCTCAAATCGGCTCT+TGG 0.465455 3_1:-72164909 Msa0373140:CDS
TATCGGGATGAGAACGGATG+AGG 0.465741 3_1:+72165216 None:intergenic
ATGAATCTAGCAACAGAATC+CGG 0.466759 3_1:+72160518 None:intergenic
AGAATTATAGCTTTGGTTGG+AGG 0.468089 3_1:-72164380 Msa0373140:CDS
CTACAGCAGCATAGCAAATG+AGG 0.471255 3_1:-72159494 Msa0373140:three_prime_UTR
CAGAATCCGGTCTGCAGCAA+TGG 0.471839 3_1:+72160531 None:intergenic
AGTTTATGGATTCTATACTT+TGG 0.475637 3_1:-72159747 Msa0373140:three_prime_UTR
GATGCTCAAAGAAAACTTGA+AGG 0.476433 3_1:+72159820 None:intergenic
GAATTATAGCTTTGGTTGGA+GGG 0.477448 3_1:-72164379 Msa0373140:CDS
TTGCAACGGAGGGGTGCATA+AGG 0.479670 3_1:+72165182 None:intergenic
GGTCCTGGCGGTATTGGTGG+TGG 0.482603 3_1:-72164684 Msa0373140:CDS
GTTAAGAACAAAGGAAAGAA+AGG 0.482616 3_1:+72159663 None:intergenic
CTTCTTCTAATTCTGCTGCC+AGG 0.483261 3_1:-72164722 Msa0373140:CDS
TGTACCTGCAGTTCCTTACA+AGG 0.483740 3_1:-72161892 Msa0373140:intron
AAAGTCGCAGTTGAAAGAAC+TGG 0.484739 3_1:-72162702 Msa0373140:CDS
AGAAACTGCTGCAGTTGTAA+TGG 0.486703 3_1:-72161311 Msa0373140:CDS
GCTAGAATTATAGCTTTGGT+TGG 0.486748 3_1:-72164383 Msa0373140:CDS
AAAATTCATCAAAATCAAAT+CGG 0.487783 3_1:-72165388 Msa0373140:five_prime_UTR
TCTGTTGCTGATACCGTCAT+AGG 0.487815 3_1:-72162034 Msa0373140:CDS
TCTTATTCTTCAATACATGC+AGG 0.488546 3_1:+72159622 None:intergenic
TGCACCAGCATTGTTGGATG+TGG 0.489325 3_1:-72160557 Msa0373140:CDS
ACCACCTTTAATAGGTCTCC+TGG 0.489994 3_1:+72164704 None:intergenic
TGAGGGTCTTGCAAAACAGC+TGG 0.493827 3_1:-72163803 Msa0373140:CDS
CTTTCGCATGTTGTTAAACC+GGG 0.497065 3_1:-72160647 Msa0373140:CDS
ATGCAGGACACACACATCAT+TGG 0.497362 3_1:+72159711 None:intergenic
CCCAAGCAATAATTAGAGAT+CGG 0.501519 3_1:-72160151 Msa0373140:CDS
ATTGCACACGGTGGTTGGAT+AGG 0.502936 3_1:-72160906 Msa0373140:CDS
GAGGGGTGCATAAGGAAGAC+TGG 0.504207 3_1:+72165190 None:intergenic
ACGGACTCCGTCGATTCCCT+CGG 0.506453 3_1:+72165313 None:intergenic
GGCTGGCTGTCCAATCTTGA+GGG 0.507848 3_1:-72159791 Msa0373140:exon
GGATTTAATGTAAAAGATGA+TGG 0.509344 3_1:+72160835 None:intergenic
ATCATCAACGATGTCGGAGA+TGG 0.510358 3_1:-72165348 Msa0373140:exon
CGACAACAGTAACTAGAAGA+TGG 0.513117 3_1:-72161725 Msa0373140:CDS
CCTTTGAGCAATTTATCTCA+AGG 0.514111 3_1:+72162249 None:intergenic
TCAAAGGAAATCAAAATTCA+GGG 0.514523 3_1:-72162233 Msa0373140:CDS
GGAACTGCAGGTACAGTTGT+GGG 0.516592 3_1:+72161900 None:intergenic
TGCTTGTAATCCTGGGACTG+GGG 0.517545 3_1:-72164405 Msa0373140:CDS
AGTTGTGGGTTGACACCACC+TGG 0.520955 3_1:+72161914 None:intergenic
TGTTGGACCTTGCACATCGA+TGG 0.521951 3_1:-72162207 Msa0373140:CDS
AGGCTGGCTGTCCAATCTTG+AGG 0.522676 3_1:-72159792 Msa0373140:exon
TGTGTTCCCCTCTCCTATGA+CGG 0.522842 3_1:+72162021 None:intergenic
TGCAGTTACCAGGGCCCAGA+TGG 0.523337 3_1:-72161765 Msa0373140:intron
AGACCTATTAAAGGTGGTCC+TGG 0.525708 3_1:-72164699 Msa0373140:CDS
ACATCCAACAATGCTGGTGC+AGG 0.529135 3_1:+72160559 None:intergenic
GTTGCATTGAGTGTTGCAGC+TGG 0.529823 3_1:-72164437 Msa0373140:CDS
TGGCTTCCATTGCTGCAGAC+CGG 0.530088 3_1:-72160537 Msa0373140:CDS
GTTGGAGGGCCATGCACTGA+AGG 0.531152 3_1:-72164365 Msa0373140:CDS
GAGGATTAGGATCGGTATGA+GGG 0.531440 3_1:+72164988 None:intergenic
ACAAACTGATATACCGTGCC+AGG 0.533185 3_1:+72164341 None:intergenic
AAACGACCTGCTCGATGTAC+CGG 0.533519 3_1:-72164461 Msa0373140:CDS
GTGTATTCGCAATCAGAAGC+AGG 0.534381 3_1:+72164621 None:intergenic
GCACCACCACCAATACCGCC+AGG 0.534883 3_1:+72164681 None:intergenic
CTTTGAGCAATTTATCTCAA+GGG 0.536388 3_1:+72162250 None:intergenic
GAAACACCGGAATTGGGAAA+AGG 0.537131 3_1:+72164657 None:intergenic
TTGAAGAATAAGAGAAGCAA+GGG 0.538160 3_1:-72159612 Msa0373140:three_prime_UTR
GTGCCAGGTCCTTCAGTGCA+TGG 0.538214 3_1:+72164356 None:intergenic
AATGCGCACGAGATGGCTGC+TGG 0.539530 3_1:-72159873 Msa0373140:CDS
ATTGCTTGGGAATCATCTTG+TGG 0.540119 3_1:+72160164 None:intergenic
AGGGAGATTGTGGCGGCGAG+TGG 0.542010 3_1:+72165236 None:intergenic
GTGTGATCAACACGGTTCCC+AGG 0.543667 3_1:-72160105 Msa0373140:intron
ATAGCTCAATGGCGCAACTT+GGG 0.545562 3_1:-72160463 Msa0373140:CDS
ACTTAGAACAGAGGCGAATG+AGG 0.545572 3_1:+72160881 None:intergenic
AATTTATTAAGAGAGTGAAA+AGG 0.545711 3_1:-72165520 Msa0373140:five_prime_UTR
TCGCCTCTGTTCTAAGTTTG+GGG 0.545724 3_1:-72160875 Msa0373140:CDS
ATAATTCTAGCCCCAGTCCC+AGG 0.547661 3_1:+72164395 None:intergenic
TGTTTAACATAATTGTGCAA+AGG 0.548071 3_1:-72165475 Msa0373140:five_prime_UTR
TCAGAAATCGCGTTGTAATG+AGG 0.548123 3_1:+72165065 None:intergenic
GGGCCATGCACTGAAGGACC+TGG 0.548285 3_1:-72164359 Msa0373140:CDS
AGGGGTGCATAAGGAAGACT+GGG 0.548496 3_1:+72165191 None:intergenic
GGATTCTATACTTTGGTTTG+GGG 0.550880 3_1:-72159740 Msa0373140:three_prime_UTR
CTTCTCTCTGTTAAGAACAA+AGG 0.552238 3_1:+72159654 None:intergenic
ATAACCTTGTAAGGAACTGC+AGG 0.554745 3_1:+72161888 None:intergenic
CGGACTCCGTCGATTCCCTC+GGG 0.556274 3_1:+72165314 None:intergenic
TATTCAACGGTGGTGTATTG+AGG 0.556523 3_1:+72165017 None:intergenic
GAGTGGGATAACGCATTTGG+AGG 0.557533 3_1:+72165253 None:intergenic
AGATCTTTATGAGAACGCAC+TGG 0.557658 3_1:+72163871 None:intergenic
AGAACGGATGAGGGAGATTG+TGG 0.559381 3_1:+72165226 None:intergenic
CTAATTGACCATCTGGGCCC+TGG 0.560974 3_1:+72161757 None:intergenic
TATTGAGGATAGAGTTCACC+AGG 0.561257 3_1:+72165032 None:intergenic
CACAAACCTGGTGTTCTGGT+TGG 0.561924 3_1:+72160431 None:intergenic
GCGGGAGTAAGGGTTGAGAA+TGG 0.562790 3_1:+72165148 None:intergenic
GATCAATGGCCTGTTCCACC+TGG 0.564462 3_1:-72164485 Msa0373140:CDS
GCTGATACCGTCATAGGAGA+GGG 0.567553 3_1:-72162028 Msa0373140:CDS
TGAAATCAACGCGGGAGTAA+GGG 0.568126 3_1:+72165138 None:intergenic
ATCGGGATGAGAACGGATGA+GGG 0.571933 3_1:+72165217 None:intergenic
GAAGCCACATCCAACAATGC+TGG 0.572390 3_1:+72160553 None:intergenic
GCAACTCCGGTACATCGAGC+AGG 0.572772 3_1:+72164455 None:intergenic
ATTTCTGAAACTCATCTCCC+TGG 0.574744 3_1:-72165050 Msa0373140:CDS
GTTATTCAGGAATTGGCTCA+AGG 0.575831 3_1:-72161343 Msa0373140:intron
GGGAGATTGTGGCGGCGAGT+GGG 0.576660 3_1:+72165237 None:intergenic
ATATAATAATGCGCACGAGA+TGG 0.576745 3_1:-72159880 Msa0373140:CDS
AACTTTCAGACAGGACAACA+AGG 0.579452 3_1:+72162676 None:intergenic
ATCTTGAGGGCAGATGATAG+AGG 0.579806 3_1:-72159778 Msa0373140:exon
AGGAACTGCAGGTACAGTTG+TGG 0.581947 3_1:+72161899 None:intergenic
ATCATCATCATCAACGATGT+CGG 0.582002 3_1:-72165354 Msa0373140:exon
ATGGGATGACAATAGCTCAA+TGG 0.585675 3_1:-72160474 Msa0373140:CDS
GCGACGCTCACAGTTTGTAC+AGG 0.585828 3_1:-72160776 Msa0373140:intron
TGGTCTTATTGCAGTTACCA+GGG 0.591873 3_1:-72161774 Msa0373140:intron
TCGACGGAGTCCGTATGACA+TGG 0.594875 3_1:-72165304 Msa0373140:CDS
AATGACCAAAACTTTCAGAC+AGG 0.595747 3_1:+72162667 None:intergenic
AGTGATCGTTCAAATACTCC+AGG 0.597059 3_1:-72161932 Msa0373140:CDS
TGAATGCAACAGCATAATGC+AGG 0.598190 3_1:+72159695 None:intergenic
ATTGAAGAATAAGAGAAGCA+AGG 0.599916 3_1:-72159613 Msa0373140:three_prime_UTR
TACAGCAGCATAGCAAATGA+GGG 0.600112 3_1:-72159493 Msa0373140:three_prime_UTR
AGGAATTGCAGAGAGATCAA+TGG 0.601153 3_1:-72164499 Msa0373140:CDS
ACAGATCCCGAGGGAATCGA+CGG 0.601592 3_1:-72165320 Msa0373140:CDS
TGCTGATACCGTCATAGGAG+AGG 0.602389 3_1:-72162029 Msa0373140:CDS
ACCTTCTCCATCGATGTGCA+AGG 0.603833 3_1:+72162200 None:intergenic
TCGCAGATTGAACATAAACT+GGG 0.603920 3_1:+72160795 None:intergenic
GCATTATTATATGTTGCTGA+CGG 0.604893 3_1:+72159891 None:intergenic
CCTTGAGATAAATTGCTCAA+AGG 0.607083 3_1:-72162249 Msa0373140:CDS
AATGAATATGATATTAGTGA+TGG 0.607798 3_1:+72160592 None:intergenic
GATCTTTATGAGAACGCACT+GGG 0.608467 3_1:+72163872 None:intergenic
CCGGGAAAATATTAATAATG+CGG 0.608982 3_1:-72160629 Msa0373140:CDS
GACAACAGTAACTAGAAGAT+GGG 0.609204 3_1:-72161724 Msa0373140:CDS
ACCTTGCACATCGATGGAGA+AGG 0.610130 3_1:-72162201 Msa0373140:intron
GCCAGACGTTCCATGTCATA+CGG 0.610591 3_1:+72165294 None:intergenic
ATGCACTGAAGGACCTGGCA+CGG 0.612108 3_1:-72164354 Msa0373140:intron
AACCTGAACCTGAGTCCCGA+AGG 0.620756 3_1:+72164839 None:intergenic
TACGTTGAGTTTGGGCATTG+CGG 0.621664 3_1:-72159546 Msa0373140:three_prime_UTR
TGGACAGATCCAGATCTTAG+CGG 0.625634 3_1:+72165115 None:intergenic
TTCTCTGAAAATGGAGACAG+AGG 0.627078 3_1:-72161278 Msa0373140:intron
GTCGCAGTTGAAAGAACTGG+TGG 0.633285 3_1:-72162699 Msa0373140:CDS
ATGAGGGATATGATATTCAA+CGG 0.634959 3_1:+72165004 None:intergenic
TATGTAAATTAATCCAGATG+AGG 0.635723 3_1:+72159410 None:intergenic
TGCAACACTCAATGCAACTC+CGG 0.636467 3_1:+72164442 None:intergenic
AGGAAACATTTGATTGCACA+CGG 0.637118 3_1:-72160918 Msa0373140:CDS
GATGGCGAACACAGATCCCG+AGG 0.639336 3_1:-72165330 Msa0373140:CDS
TAAGTTTGGGGATTACCGCA+AGG 0.640681 3_1:-72160863 Msa0373140:CDS
GAAATCGCGTTGTAATGAGG+TGG 0.643805 3_1:+72165068 None:intergenic
GAAGCACTAATTGACCATCT+GGG 0.645330 3_1:+72161751 None:intergenic
TTATACAGGACTCATCATCA+TGG 0.645534 3_1:-72159267 Msa0373140:three_prime_UTR
TCAGAACCAACCAGAACACC+AGG 0.646048 3_1:-72160437 Msa0373140:intron
TAAAGATCTTGATAAAGATG+CGG 0.649605 3_1:-72163857 Msa0373140:CDS
GCCAGGAGACCTATTAAAGG+TGG 0.649818 3_1:-72164705 Msa0373140:CDS
CCTATTAAAGGTGGTCCTGG+CGG 0.655135 3_1:-72164696 Msa0373140:CDS
GGGTGCATAAGGAAGACTGG+GGG 0.657762 3_1:+72165193 None:intergenic
CGCAGATTGAACATAAACTG+GGG 0.660034 3_1:+72160796 None:intergenic
CGAGCAGGTCGTTTGCCAGG+TGG 0.660104 3_1:+72164470 None:intergenic
AGATAGTGCTGTTAGCTCTG+AGG 0.662391 3_1:-72161700 Msa0373140:intron
GGGGTGCATAAGGAAGACTG+GGG 0.665065 3_1:+72165192 None:intergenic
ATGACGGTATCAGCAACAGA+AGG 0.668376 3_1:+72162037 None:intergenic
AAAGATCTAAAACATGACCC+TGG 0.670877 3_1:+72163776 None:intergenic
GGAGTAAGGGTTGAGAATGG+AGG 0.671591 3_1:+72165151 None:intergenic
GCAAAACAGCTGGTTAACCA+GGG 0.675809 3_1:-72163793 Msa0373140:CDS
CTTAGCGGTGAAATCAACGC+GGG 0.678250 3_1:+72165130 None:intergenic
ACGGATGAGGGAGATTGTGG+CGG 0.679027 3_1:+72165229 None:intergenic
CTGATACCGTCATAGGAGAG+GGG 0.689842 3_1:-72162027 Msa0373140:CDS
GGAAGGAGGAGGATTAGGAT+CGG 0.693230 3_1:+72164980 None:intergenic
ATGGCGAACACAGATCCCGA+GGG 0.694002 3_1:-72165329 Msa0373140:CDS
ACAACAATATGGAAGATGTG+TGG 0.696066 3_1:-72162001 Msa0373140:CDS
AAGATGATGGATCATCCTTG+CGG 0.696117 3_1:+72160848 None:intergenic
GCAGATTGAACATAAACTGG+GGG 0.697137 3_1:+72160797 None:intergenic
AATCCCCAAACTTAGAACAG+AGG 0.701622 3_1:+72160872 None:intergenic
GATCGTTCAAATACTCCAGG+TGG 0.701854 3_1:-72161929 Msa0373140:CDS
GAGGATTCTACTTTGCTACG+TGG 0.707824 3_1:+72165272 None:intergenic
GCATTGCGGAAAGAAAGGAT+AGG 0.714453 3_1:-72159532 Msa0373140:three_prime_UTR
TTGGTAGTGTGTGATCAACA+CGG 0.729590 3_1:-72160113 Msa0373140:CDS
GTGAAATGAACACTGTTGTG+TGG 0.732784 3_1:-72159245 Msa0373140:three_prime_UTR
AGGGATATGATATTCAACGG+TGG 0.744253 3_1:+72165007 None:intergenic
AAACATTTGATTGCACACGG+TGG 0.751378 3_1:-72160915 Msa0373140:CDS
TTGCGAATACACTCTCAATG+CGG 0.783057 3_1:-72164610 Msa0373140:intron
TCTTAGCGGTGAAATCAACG+CGG 0.800179 3_1:+72165129 None:intergenic
ATTGAGGATAGAGTTCACCA+GGG 0.804613 3_1:+72165033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr3_1:72161355-72161374 None:intergenic 0.0%
!! TAATAATATGCTAAAAATTA+CGG - chr3_1:72163694-72163713 Msa0373140:intron 10.0%
!! AAAATTCATCAAAATCAAAT+CGG - chr3_1:72159363-72159382 Msa0373140:three_prime_UTR 15.0%
!!! ATTCAAATGATTTAAAATTG+TGG - chr3_1:72160172-72160191 Msa0373140:CDS 15.0%
!! TTAAAATAATCCTAAACAAA+CGG - chr3_1:72161426-72161445 Msa0373140:intron 15.0%
!! AATTAATGTATCACAAAAAT+GGG + chr3_1:72161466-72161485 None:intergenic 15.0%
!! TAATTAATGTATCACAAAAA+TGG + chr3_1:72161467-72161486 None:intergenic 15.0%
!!! TCATGGTTATTTTATATTTT+AGG - chr3_1:72162009-72162028 Msa0373140:CDS 15.0%
!!! ATAATTTAAAACAAAAGTTG+TGG + chr3_1:72162398-72162417 None:intergenic 15.0%
!! TAAATTCAAACATTTAGATT+AGG + chr3_1:72163247-72163266 None:intergenic 15.0%
!! TTCTTAAATTGATTAATAAC+AGG - chr3_1:72163362-72163381 Msa0373140:intron 15.0%
!! TTTAAGTAAAACACAAAATT+AGG - chr3_1:72163614-72163633 Msa0373140:intron 15.0%
!! AGAGATTAATTATCTCAAAT+CGG - chr3_1:72159835-72159854 Msa0373140:CDS 20.0%
!!! AATGTATGATTGATGATTTA+TGG - chr3_1:72160441-72160460 Msa0373140:CDS 20.0%
!! AAGTATGAGAAAATTATAAG+TGG + chr3_1:72161028-72161047 None:intergenic 20.0%
!!! TAATTATTTCTCTTGTTAGT+TGG - chr3_1:72161051-72161070 Msa0373140:intron 20.0%
!! CAAAAATGGGATAAATTATA+AGG + chr3_1:72161453-72161472 None:intergenic 20.0%
!! CGTTGAATATATAAATTTAC+AGG + chr3_1:72161606-72161625 None:intergenic 20.0%
!! GTAAATTTATATATTCAACG+TGG - chr3_1:72161606-72161625 Msa0373140:intron 20.0%
!! AAAACATTTGTACTAAATAG+CGG + chr3_1:72161769-72161788 None:intergenic 20.0%
!! TGTTATTAAAAATATGCGAT+GGG + chr3_1:72161825-72161844 None:intergenic 20.0%
!!! TTGTTATTAAAAATATGCGA+TGG + chr3_1:72161826-72161845 None:intergenic 20.0%
!! ATTGAGTTTGAAAAACAATT+CGG - chr3_1:72161952-72161971 Msa0373140:CDS 20.0%
!!! GGTTATTTTATATTTTAGGT+TGG - chr3_1:72162013-72162032 Msa0373140:CDS 20.0%
!! GAAAAATAAGAAATAACAAC+AGG + chr3_1:72162259-72162278 None:intergenic 20.0%
!!! TATTTTTCAGTTATACTTGT+TGG - chr3_1:72162271-72162290 Msa0373140:intron 20.0%
!!! ATTTTTCAGTTATACTTGTT+GGG - chr3_1:72162272-72162291 Msa0373140:intron 20.0%
!!! AATAAATCTGAATGTGTTTT+AGG + chr3_1:72163539-72163558 None:intergenic 20.0%
!!! AAATGTAAAATTCAAGTTGT+TGG - chr3_1:72163724-72163743 Msa0373140:intron 20.0%
!!! ATGTATTTTATATGCATTTG+CGG - chr3_1:72163749-72163768 Msa0373140:intron 20.0%
!! TTATGGTGAAATATATTTAC+AGG - chr3_1:72164050-72164069 Msa0373140:intron 20.0%
!! AATGAATATGATATTAGTGA+TGG + chr3_1:72164162-72164181 None:intergenic 20.0%
!!! TTAACTTTAATTTATGGTAC+AGG - chr3_1:72164541-72164560 Msa0373140:intron 20.0%
!!! CATATTTTTCCTATTTGTTT+TGG - chr3_1:72165295-72165314 Msa0373140:CDS 20.0%
!! AACCCAAAAATTAAATATCT+GGG + chr3_1:72165321-72165340 None:intergenic 20.0%
! TGTTTAACATAATTGTGCAA+AGG - chr3_1:72159276-72159295 Msa0373140:three_prime_UTR 25.0%
! GTTTAACATAATTGTGCAAA+GGG - chr3_1:72159277-72159296 Msa0373140:three_prime_UTR 25.0%
!!! TCTAAAGTTTATGTTTTTCG+CGG - chr3_1:72159959-72159978 Msa0373140:intron 25.0%
! AAAGAAAATTAGTTAGCGTT+AGG - chr3_1:72160496-72160515 Msa0373140:CDS 25.0%
! TAAAATTGGAATAACTGGAA+GGG - chr3_1:72160725-72160744 Msa0373140:intron 25.0%
! TAAAGATCTTGATAAAGATG+CGG - chr3_1:72160894-72160913 Msa0373140:CDS 25.0%
!! TTTTAGGCTTACTTAAGTAT+AGG - chr3_1:72161523-72161542 Msa0373140:intron 25.0%
! TAATGTGTTTATGTTTCAGT+GGG - chr3_1:72162477-72162496 Msa0373140:intron 25.0%
! TCAAAGGAAATCAAAATTCA+GGG - chr3_1:72162518-72162537 Msa0373140:intron 25.0%
! TCTTTACAGAAAGATAGTTT+AGG + chr3_1:72163151-72163170 None:intergenic 25.0%
! CATGTTTATTCTCTAATGAT+TGG - chr3_1:72163307-72163326 Msa0373140:intron 25.0%
!! CTTACATTATTGTGTTATTC+AGG - chr3_1:72163395-72163414 Msa0373140:intron 25.0%
!! TTATTGTGTTATTCAGGAAT+TGG - chr3_1:72163401-72163420 Msa0373140:intron 25.0%
!!! TTGATGGTTTTGATGAAATT+TGG - chr3_1:72163652-72163671 Msa0373140:intron 25.0%
!!! TGATGGTTTTGATGAAATTT+GGG - chr3_1:72163653-72163672 Msa0373140:intron 25.0%
! GCAAATGCATATAAAATACA+TGG + chr3_1:72163750-72163769 None:intergenic 25.0%
! AATAAAATTGATGCTCAGTA+AGG + chr3_1:72163808-72163827 None:intergenic 25.0%
!!! AGCATCAATTTTATTTGATC+AGG - chr3_1:72163813-72163832 Msa0373140:CDS 25.0%
! GGATTTAATGTAAAAGATGA+TGG + chr3_1:72163919-72163938 None:intergenic 25.0%
!!! TTTAGTGTGGTTATTTTTCA+TGG - chr3_1:72164258-72164277 Msa0373140:intron 25.0%
!!! TTAGTGTGGTTATTTTTCAT+GGG - chr3_1:72164259-72164278 Msa0373140:intron 25.0%
! TAACAGCAATTTCTTTAGTA+GGG + chr3_1:72164356-72164375 None:intergenic 25.0%
!! CTGCTGTTAACTTTAATTTA+TGG - chr3_1:72164535-72164554 Msa0373140:intron 25.0%
! TAACAAAAGGGATGAAAATA+CGG + chr3_1:72164750-72164769 None:intergenic 25.0%
! TTATGAAAAATCTTGACTCA+AGG + chr3_1:72164775-72164794 None:intergenic 25.0%
!! GAGTCAAGATTTTTCATAAT+AGG - chr3_1:72164776-72164795 Msa0373140:CDS 25.0%
! TTCATAATAGGAAACTTACT+AGG - chr3_1:72164788-72164807 Msa0373140:CDS 25.0%
! TCATAATAGGAAACTTACTA+GGG - chr3_1:72164789-72164808 Msa0373140:CDS 25.0%
! AGTTTATGGATTCTATACTT+TGG - chr3_1:72165004-72165023 Msa0373140:CDS 25.0%
! TCCATAAAATAAAATTCGAC+AGG + chr3_1:72165165-72165184 None:intergenic 25.0%
! GAACCCAAAAATTAAATATC+TGG + chr3_1:72165322-72165341 None:intergenic 25.0%
! TATGTAAATTAATCCAGATG+AGG + chr3_1:72165344-72165363 None:intergenic 25.0%
! ATCTGGATTAATTTACATAG+TGG - chr3_1:72165345-72165364 Msa0373140:exon 25.0%
!! TCTGTCCATTTTGTTATCAA+CGG - chr3_1:72159651-72159670 Msa0373140:three_prime_UTR 30.0%
ATGAGGGATATGATATTCAA+CGG + chr3_1:72159750-72159769 None:intergenic 30.0%
! CTTGTTGGATTTTTATCCTT+CGG - chr3_1:72159896-72159915 Msa0373140:CDS 30.0%
! TTGTTGGATTTTTATCCTTC+GGG - chr3_1:72159897-72159916 Msa0373140:CDS 30.0%
! GATTTCCAAAGATCAGATTT+TGG - chr3_1:72159991-72160010 Msa0373140:intron 30.0%
TTGTTCCAAAATCTGATCTT+TGG + chr3_1:72159999-72160018 None:intergenic 30.0%
!!! AGATCAGATTTTGGAACAAT+TGG - chr3_1:72160000-72160019 Msa0373140:intron 30.0%
!!! GATCAGATTTTGGAACAATT+GGG - chr3_1:72160001-72160020 Msa0373140:intron 30.0%
!!! TATGCCTTGGATTTTGTTTT+TGG - chr3_1:72160471-72160490 Msa0373140:CDS 30.0%
TTCACCAAAAACAAAATCCA+AGG + chr3_1:72160478-72160497 None:intergenic 30.0%
!! TCATAGAAGTGTGTTTTTCT+TGG - chr3_1:72160671-72160690 Msa0373140:CDS 30.0%
!! AAAGTGTTGTGTGGTAAAAT+TGG - chr3_1:72160711-72160730 Msa0373140:intron 30.0%
TGTGGTAAAATTGGAATAAC+TGG - chr3_1:72160720-72160739 Msa0373140:intron 30.0%
GTAAAATTGGAATAACTGGA+AGG - chr3_1:72160724-72160743 Msa0373140:intron 30.0%
TTCACTGCTTTCTTAAAGTA+AGG + chr3_1:72160922-72160941 None:intergenic 30.0%
!! AAAGCAGTGAAGTTTTATGA+GGG - chr3_1:72160931-72160950 Msa0373140:intron 30.0%
TTTCTCTTGTTAGTTGGATA+TGG - chr3_1:72161057-72161076 Msa0373140:intron 30.0%
! TTTTCAGAAAAACAGAAGCA+TGG + chr3_1:72161248-72161267 None:intergenic 30.0%
ATTATAAGGTCCGTTTGTTT+AGG + chr3_1:72161439-72161458 None:intergenic 30.0%
AAGGAATGTTATGGATAACA+TGG + chr3_1:72161493-72161512 None:intergenic 30.0%
GTTATCCATAACATTCCTTA+CGG - chr3_1:72161494-72161513 Msa0373140:intron 30.0%
TTATCCATAACATTCCTTAC+GGG - chr3_1:72161495-72161514 Msa0373140:intron 30.0%
ATGTTGTTAAATAGCAGCTA+TGG - chr3_1:72161686-72161705 Msa0373140:intron 30.0%
! TTTTCATATAGCTGCTATAG+TGG - chr3_1:72161785-72161804 Msa0373140:intron 30.0%
TTCAATGATGTTGTCAATCT+CGG + chr3_1:72161857-72161876 None:intergenic 30.0%
!!! ATGATGCTTCTTTTTTCTCA+AGG - chr3_1:72162354-72162373 Msa0373140:intron 30.0%
TCTCTGATAAACGATATGTA+GGG + chr3_1:72162447-72162466 None:intergenic 30.0%
CTAATGTGTTTATGTTTCAG+TGG - chr3_1:72162476-72162495 Msa0373140:intron 30.0%
CTTTGAGCAATTTATCTCAA+GGG + chr3_1:72162504-72162523 None:intergenic 30.0%
CTCAAAGGAAATCAAAATTC+AGG - chr3_1:72162517-72162536 Msa0373140:intron 30.0%
ATCAAAATTCAGGGAATTGT+TGG - chr3_1:72162527-72162546 Msa0373140:intron 30.0%
TCTTGAATTAGAGATTGTGT+TGG - chr3_1:72162619-72162638 Msa0373140:CDS 30.0%
! GTTGGGCAAATTTTGTAAAT+AGG - chr3_1:72162886-72162905 Msa0373140:intron 30.0%
TGTCTTTCCACTATTTCATT+GGG - chr3_1:72162932-72162951 Msa0373140:intron 30.0%
TTGAGCATTAATAATGGTCA+TGG - chr3_1:72162957-72162976 Msa0373140:intron 30.0%
GTCGATGTGATAGAAATATT+TGG - chr3_1:72163121-72163140 Msa0373140:intron 30.0%
AGAGAATAAACATGTCATTC+AGG + chr3_1:72163301-72163320 None:intergenic 30.0%
! TAGATATGCTTCTCTGAAAA+TGG - chr3_1:72163464-72163483 Msa0373140:intron 30.0%
GAGAACAAAAGATAGTAAGA+CGG + chr3_1:72163510-72163529 None:intergenic 30.0%
TCAACAAATATATACTTCCC+AGG + chr3_1:72163575-72163594 None:intergenic 30.0%
TTTGTTGAAATGAATGCTAG+TGG - chr3_1:72163587-72163606 Msa0373140:intron 30.0%
TTGTTGAAATGAATGCTAGT+GGG - chr3_1:72163588-72163607 Msa0373140:intron 30.0%
!! GTGAATAGCTTTGATATTGA+TGG - chr3_1:72163636-72163655 Msa0373140:intron 30.0%
AGGAAGAAAACAACAATAAC+AGG + chr3_1:72164003-72164022 None:intergenic 30.0%
CCATAAATCAGCTAACTATT+AGG + chr3_1:72164036-72164055 None:intergenic 30.0%
! CCTAATAGTTAGCTGATTTA+TGG - chr3_1:72164033-72164052 Msa0373140:intron 30.0%
! CCGCATTATTAATATTTTCC+CGG + chr3_1:72164125-72164144 None:intergenic 30.0%
CCGGGAAAATATTAATAATG+CGG - chr3_1:72164122-72164141 Msa0373140:intron 30.0%
!!! GCTAGATTCATATTTTAGTG+TGG - chr3_1:72164245-72164264 Msa0373140:intron 30.0%
GTAACAGCAATTTCTTTAGT+AGG + chr3_1:72164357-72164376 None:intergenic 30.0%
!!! GTTTCTTTCTGTTAGTTTTG+TGG - chr3_1:72164440-72164459 Msa0373140:CDS 30.0%
GCTCATGGTATGAATAATTT+GGG + chr3_1:72164688-72164707 None:intergenic 30.0%
TGCTCATGGTATGAATAATT+TGG + chr3_1:72164689-72164708 None:intergenic 30.0%
TGACTCAAGGTTTAACAAAA+GGG + chr3_1:72164762-72164781 None:intergenic 30.0%
TTGACTCAAGGTTTAACAAA+AGG + chr3_1:72164763-72164782 None:intergenic 30.0%
GTTTCATTGATGTCTTTAAC+AGG - chr3_1:72164811-72164830 Msa0373140:CDS 30.0%
GCATTATTATATGTTGCTGA+CGG + chr3_1:72164863-72164882 None:intergenic 30.0%
ATGGATTCTATACTTTGGTT+TGG - chr3_1:72165009-72165028 Msa0373140:CDS 30.0%
! TGGATTCTATACTTTGGTTT+GGG - chr3_1:72165010-72165029 Msa0373140:CDS 30.0%
GTTAAGAACAAAGGAAAGAA+AGG + chr3_1:72165091-72165110 None:intergenic 30.0%
TCTTATTCTTCAATACATGC+AGG + chr3_1:72165132-72165151 None:intergenic 30.0%
ATTGAAGAATAAGAGAAGCA+AGG - chr3_1:72165138-72165157 Msa0373140:CDS 30.0%
TTGAAGAATAAGAGAAGCAA+GGG - chr3_1:72165139-72165158 Msa0373140:CDS 30.0%
!!! GCCTGTCGAATTTTATTTTA+TGG - chr3_1:72165161-72165180 Msa0373140:CDS 30.0%
ATTCATATGTACGTTGAGTT+TGG - chr3_1:72165196-72165215 Msa0373140:CDS 30.0%
TTCATATGTACGTTGAGTTT+GGG - chr3_1:72165197-72165216 Msa0373140:CDS 30.0%
!! TGGCCCAGATATTTAATTTT+TGG - chr3_1:72165315-72165334 Msa0373140:CDS 30.0%
!! GGCCCAGATATTTAATTTTT+GGG - chr3_1:72165316-72165335 Msa0373140:CDS 30.0%
!! TTTACTTTTACATACTCGCT+AGG - chr3_1:72165369-72165388 Msa0373140:five_prime_UTR 30.0%
TTTGTGAAGTAAGCTTATAC+AGG - chr3_1:72165470-72165489 Msa0373140:five_prime_UTR 30.0%
ATCATCATCATCAACGATGT+CGG - chr3_1:72159397-72159416 Msa0373140:three_prime_UTR 35.0%
!! TGGTTCCGTTGATAACAAAA+TGG + chr3_1:72159659-72159678 None:intergenic 35.0%
AAGCAGAAAGAGAAAAACAG+GGG + chr3_1:72159795-72159814 None:intergenic 35.0%
CAAGCAGAAAGAGAAAAACA+GGG + chr3_1:72159796-72159815 None:intergenic 35.0%
TCAAGCAGAAAGAGAAAAAC+AGG + chr3_1:72159797-72159816 None:intergenic 35.0%
! AATTATCTCAAATCGGCTCT+TGG - chr3_1:72159842-72159861 Msa0373140:CDS 35.0%
! TTACCTGATAATGCTCTTGT+TGG - chr3_1:72159881-72159900 Msa0373140:CDS 35.0%
!! AATCCAACAAGAGCATTATC+AGG + chr3_1:72159887-72159906 None:intergenic 35.0%
! CTGATCTTTGGAAATCTCTT+TGG + chr3_1:72159987-72160006 None:intergenic 35.0%
CAACAAAAATCGTGAAACAC+CGG + chr3_1:72160110-72160129 None:intergenic 35.0%
!!! GTGATTGTTTTTTCAGCTGT+TGG - chr3_1:72160229-72160248 Msa0373140:intron 35.0%
!!! ATTGTTTTTTCAGCTGTTGG+AGG - chr3_1:72160232-72160251 Msa0373140:intron 35.0%
!! GCTAGAATTATAGCTTTGGT+TGG - chr3_1:72160368-72160387 Msa0373140:intron 35.0%
!! AGAATTATAGCTTTGGTTGG+AGG - chr3_1:72160371-72160390 Msa0373140:intron 35.0%
!! GAATTATAGCTTTGGTTGGA+GGG - chr3_1:72160372-72160391 Msa0373140:intron 35.0%
!! GAATGATTTGTTAGGCGTAT+TGG - chr3_1:72160561-72160580 Msa0373140:CDS 35.0%
TCGAAGTTTCATAGTCATGT+TGG - chr3_1:72160586-72160605 Msa0373140:CDS 35.0%
! GAAGTGTGTTTTTCTTGGTT+TGG - chr3_1:72160676-72160695 Msa0373140:CDS 35.0%
!! TGAAAGTTCAAAGTGTTGTG+TGG - chr3_1:72160702-72160721 Msa0373140:intron 35.0%
!! GAAAGCAGTGAAGTTTTATG+AGG - chr3_1:72160930-72160949 Msa0373140:intron 35.0%
! AAAGATCTAAAACATGACCC+TGG + chr3_1:72160978-72160997 None:intergenic 35.0%
TTTGGAAAAATTGAGCTGCA+TGG + chr3_1:72161171-72161190 None:intergenic 35.0%
TTTCCAAACTCCACATTAGA+AGG - chr3_1:72161183-72161202 Msa0373140:intron 35.0%
! TAAACAGTTTTGCATGCACT+TGG - chr3_1:72161277-72161296 Msa0373140:intron 35.0%
! TTCCTTACGGGAAAGTTTTT+AGG - chr3_1:72161507-72161526 Msa0373140:intron 35.0%
TTGTTAAATAGCAGCTATGG+CGG - chr3_1:72161689-72161708 Msa0373140:intron 35.0%
! TTGGATGAACCGTTGTTATT+CGG - chr3_1:72161739-72161758 Msa0373140:CDS 35.0%
!!! CTTTGTTTTGTGCTGATTCA+TGG - chr3_1:72161992-72162011 Msa0373140:CDS 35.0%
AATGACCAAAACTTTCAGAC+AGG + chr3_1:72162087-72162106 None:intergenic 35.0%
! TTTTGGTCATTCAGTCTTCA+AGG - chr3_1:72162096-72162115 Msa0373140:intron 35.0%
!! CTCTTTTAAGCGTGTTTTTG+AGG - chr3_1:72162120-72162139 Msa0373140:intron 35.0%
!! TTTAAGCGTGTTTTTGAGGA+TGG - chr3_1:72162124-72162143 Msa0373140:intron 35.0%
!! TTAAGCGTGTTTTTGAGGAT+GGG - chr3_1:72162125-72162144 Msa0373140:intron 35.0%
ATAAGAAATAACAACAGGCG+AGG + chr3_1:72162254-72162273 None:intergenic 35.0%
GTCTCTGATAAACGATATGT+AGG + chr3_1:72162448-72162467 None:intergenic 35.0%
CCTTTGAGCAATTTATCTCA+AGG + chr3_1:72162505-72162524 None:intergenic 35.0%
CCTTGAGATAAATTGCTCAA+AGG - chr3_1:72162502-72162521 Msa0373140:intron 35.0%
TTTACTCACATACTGCAGAA+AGG - chr3_1:72162690-72162709 Msa0373140:CDS 35.0%
ACAACAATATGGAAGATGTG+TGG - chr3_1:72162750-72162769 Msa0373140:intron 35.0%
AGTTCCTTACAAGGTTATGT+TGG - chr3_1:72162868-72162887 Msa0373140:intron 35.0%
GTTCCTTACAAGGTTATGTT+GGG - chr3_1:72162869-72162888 Msa0373140:intron 35.0%
GTGTCTTTCCACTATTTCAT+TGG - chr3_1:72162931-72162950 Msa0373140:intron 35.0%
TGGGTCTTGAGCATTAATAA+TGG - chr3_1:72162951-72162970 Msa0373140:intron 35.0%
GACAACAGTAACTAGAAGAT+GGG - chr3_1:72163027-72163046 Msa0373140:intron 35.0%
TGTTGAAATGAATGCTAGTG+GGG - chr3_1:72163589-72163608 Msa0373140:intron 35.0%
AGGAAACATTTGATTGCACA+CGG - chr3_1:72163833-72163852 Msa0373140:CDS 35.0%
TCGCAGATTGAACATAAACT+GGG + chr3_1:72163959-72163978 None:intergenic 35.0%
ACTTTCGCATGTTGTTAAAC+CGG - chr3_1:72164103-72164122 Msa0373140:intron 35.0%
ATGAATCTAGCAACAGAATC+CGG + chr3_1:72164236-72164255 None:intergenic 35.0%
AATTTGTGAGCAGAATTCTC+AGG + chr3_1:72164379-72164398 None:intergenic 35.0%
!!! CTTTCTGTTAGTTTTGTGGA+CGG - chr3_1:72164444-72164463 Msa0373140:CDS 35.0%
CCGATCTCTAATTATTGCTT+GGG + chr3_1:72164603-72164622 None:intergenic 35.0%
CCCAAGCAATAATTAGAGAT+CGG - chr3_1:72164600-72164619 Msa0373140:intron 35.0%
ACCGATCTCTAATTATTGCT+TGG + chr3_1:72164604-72164623 None:intergenic 35.0%
GTAAGAAACAATACTGACCT+GGG + chr3_1:72164666-72164685 None:intergenic 35.0%
ATACTCATCAGTATTGCTCA+TGG + chr3_1:72164703-72164722 None:intergenic 35.0%
ATATAATAATGCGCACGAGA+TGG - chr3_1:72164871-72164890 Msa0373140:CDS 35.0%
GATGCTCAAAGAAAACTTGA+AGG + chr3_1:72164934-72164953 None:intergenic 35.0%
! TTTTCTTTGAGCATCTGCAA+AGG - chr3_1:72164939-72164958 Msa0373140:CDS 35.0%
!! GGATTCTATACTTTGGTTTG+GGG - chr3_1:72165011-72165030 Msa0373140:CDS 35.0%
CTTCTCTCTGTTAAGAACAA+AGG + chr3_1:72165100-72165119 None:intergenic 35.0%
ATATCTGGGCCAAAACAAAT+AGG + chr3_1:72165307-72165326 None:intergenic 35.0%
!!! TAATTTTTGGGTTCCTCATC+TGG - chr3_1:72165328-72165347 Msa0373140:CDS 35.0%
! AAGACATTTTGTCATGTCGT+TGG - chr3_1:72165401-72165420 Msa0373140:five_prime_UTR 35.0%
TTATACAGGACTCATCATCA+TGG - chr3_1:72165484-72165503 Msa0373140:five_prime_UTR 35.0%
! CGATGATGATGATGATGCAA+AGG + chr3_1:72159338-72159357 None:intergenic 40.0%
TTGATTTCACCGCTAAGATC+TGG - chr3_1:72159627-72159646 Msa0373140:three_prime_UTR 40.0%
CGTTGTAATGAGGTGGAAAA+TGG + chr3_1:72159679-72159698 None:intergenic 40.0%
TCAGAAATCGCGTTGTAATG+AGG + chr3_1:72159689-72159708 None:intergenic 40.0%
!! ATTTCTGAAACTCATCTCCC+TGG - chr3_1:72159701-72159720 Msa0373140:three_prime_UTR 40.0%
ATTGAGGATAGAGTTCACCA+GGG + chr3_1:72159721-72159740 None:intergenic 40.0%
TATTGAGGATAGAGTTCACC+AGG + chr3_1:72159722-72159741 None:intergenic 40.0%
TATTCAACGGTGGTGTATTG+AGG + chr3_1:72159737-72159756 None:intergenic 40.0%
AGGGATATGATATTCAACGG+TGG + chr3_1:72159747-72159766 None:intergenic 40.0%
AGAAAGAGAAAAACAGGGGA+AGG + chr3_1:72159791-72159810 None:intergenic 40.0%
! ATTTTTATCCTTCGGGACTC+AGG - chr3_1:72159904-72159923 Msa0373140:CDS 40.0%
! TCAGGTTCAGGTTCATGAAT+TGG - chr3_1:72159922-72159941 Msa0373140:intron 40.0%
! CAGGTTCAGGTTCATGAATT+GGG - chr3_1:72159923-72159942 Msa0373140:intron 40.0%
AATCGTGAAACACCGGAATT+GGG + chr3_1:72160103-72160122 None:intergenic 40.0%
AAATCGTGAAACACCGGAAT+TGG + chr3_1:72160104-72160123 None:intergenic 40.0%
TTGCGAATACACTCTCAATG+CGG - chr3_1:72160141-72160160 Msa0373140:CDS 40.0%
AGGAATTGCAGAGAGATCAA+TGG - chr3_1:72160252-72160271 Msa0373140:intron 40.0%
TGGGGCTAGAATTATAGCTT+TGG - chr3_1:72160364-72160383 Msa0373140:intron 40.0%
!! TTATGGCTGTTTCTATGCCT+TGG - chr3_1:72160458-72160477 Msa0373140:CDS 40.0%
!! TACGAGCGGAATGATTTGTT+AGG - chr3_1:72160553-72160572 Msa0373140:CDS 40.0%
GAATAACTGGAAGGGAACTT+TGG - chr3_1:72160733-72160752 Msa0373140:intron 40.0%
CATCAGAGATATTCTGTGGA+TGG + chr3_1:72160805-72160824 None:intergenic 40.0%
TCGACATCAGAGATATTCTG+TGG + chr3_1:72160809-72160828 None:intergenic 40.0%
GATCTTTATGAGAACGCACT+GGG + chr3_1:72160882-72160901 None:intergenic 40.0%
AGATCTTTATGAGAACGCAC+TGG + chr3_1:72160883-72160902 None:intergenic 40.0%
! TTTTGCATCAGCACTTGATC+AGG - chr3_1:72160996-72161015 Msa0373140:intron 40.0%
ATGCCTTCTAATGTGGAGTT+TGG + chr3_1:72161189-72161208 None:intergenic 40.0%
GGATTAGATGCCTTCTAATG+TGG + chr3_1:72161196-72161215 None:intergenic 40.0%
CTTTCCCGTAAGGAATGTTA+TGG + chr3_1:72161502-72161521 None:intergenic 40.0%
AGCCTAAAAACTTTCCCGTA+AGG + chr3_1:72161512-72161531 None:intergenic 40.0%
! TACCTTTGTTTCTCCCTAAC+CGG - chr3_1:72161562-72161581 Msa0373140:intron 40.0%
ACGTGGTTAATACATCCATC+TGG - chr3_1:72161623-72161642 Msa0373140:intron 40.0%
CGTGGTTAATACATCCATCT+GGG - chr3_1:72161624-72161643 Msa0373140:intron 40.0%
TGCTATAGCGTAGCAGAATT+TGG - chr3_1:72161720-72161739 Msa0373140:CDS 40.0%
TGTTGTCAATCTCGGATAGT+GGG + chr3_1:72161849-72161868 None:intergenic 40.0%
ATGTTGTCAATCTCGGATAG+TGG + chr3_1:72161850-72161869 None:intergenic 40.0%
AAAGTCGCAGTTGAAAGAAC+TGG - chr3_1:72162049-72162068 Msa0373140:intron 40.0%
AACTTTCAGACAGGACAACA+AGG + chr3_1:72162078-72162097 None:intergenic 40.0%
! GTTGTCCTGTCTGAAAGTTT+TGG - chr3_1:72162079-72162098 Msa0373140:intron 40.0%
!! TAAGCGTGTTTTTGAGGATG+GGG - chr3_1:72162126-72162145 Msa0373140:intron 40.0%
AACTATGTTGGCATCTCACT+TGG + chr3_1:72162316-72162335 None:intergenic 40.0%
AAGTGAGATGCCAACATAGT+TGG - chr3_1:72162315-72162334 Msa0373140:intron 40.0%
AGTGAGATGCCAACATAGTT+GGG - chr3_1:72162316-72162335 Msa0373140:intron 40.0%
GAATCAGAGCATGATATGTC+TGG - chr3_1:72162658-72162677 Msa0373140:CDS 40.0%
AGTGATCGTTCAAATACTCC+AGG - chr3_1:72162819-72162838 Msa0373140:intron 40.0%
ATAACCTTGTAAGGAACTGC+AGG + chr3_1:72162866-72162885 None:intergenic 40.0%
TTGCCCAACATAACCTTGTA+AGG + chr3_1:72162875-72162894 None:intergenic 40.0%
CTCAAGACCCAATGAAATAG+TGG + chr3_1:72162942-72162961 None:intergenic 40.0%
!! ATGGTCTTATTGCAGTTACC+AGG - chr3_1:72162976-72162995 Msa0373140:intron 40.0%
!! TGGTCTTATTGCAGTTACCA+GGG - chr3_1:72162977-72162996 Msa0373140:intron 40.0%
! GAAGCACTAATTGACCATCT+GGG + chr3_1:72163003-72163022 None:intergenic 40.0%
CGACAACAGTAACTAGAAGA+TGG - chr3_1:72163026-72163045 Msa0373140:intron 40.0%
!!! TCCGGTCTTTTTTATGTCTG+TGG - chr3_1:72163078-72163097 Msa0373140:intron 40.0%
GCCACAGACATAAAAAAGAC+CGG + chr3_1:72163082-72163101 None:intergenic 40.0%
!!! CTTTTTTATGTCTGTGGCTG+TGG - chr3_1:72163084-72163103 Msa0373140:intron 40.0%
! GTTATTCAGGAATTGGCTCA+AGG - chr3_1:72163408-72163427 Msa0373140:intron 40.0%
TTACAACTGCAGCAGTTTCT+TGG + chr3_1:72163440-72163459 None:intergenic 40.0%
AGAAACTGCTGCAGTTGTAA+TGG - chr3_1:72163440-72163459 Msa0373140:intron 40.0%
! TTCTCTGAAAATGGAGACAG+AGG - chr3_1:72163473-72163492 Msa0373140:intron 40.0%
TTATTTACTCAAGCAGCTCC+TGG - chr3_1:72163554-72163573 Msa0373140:intron 40.0%
TATTTACTCAAGCAGCTCCT+GGG - chr3_1:72163555-72163574 Msa0373140:intron 40.0%
AAACATTTGATTGCACACGG+TGG - chr3_1:72163836-72163855 Msa0373140:CDS 40.0%
! ATTCGCCTCTGTTCTAAGTT+TGG - chr3_1:72163874-72163893 Msa0373140:CDS 40.0%
! TTCGCCTCTGTTCTAAGTTT+GGG - chr3_1:72163875-72163894 Msa0373140:CDS 40.0%
AATCCCCAAACTTAGAACAG+AGG + chr3_1:72163882-72163901 None:intergenic 40.0%
!! AAGATGATGGATCATCCTTG+CGG + chr3_1:72163906-72163925 None:intergenic 40.0%
TGGGGGAAAAGAGAAAATGA+TGG + chr3_1:72163940-72163959 None:intergenic 40.0%
GCAGATTGAACATAAACTGG+GGG + chr3_1:72163957-72163976 None:intergenic 40.0%
CGCAGATTGAACATAAACTG+GGG + chr3_1:72163958-72163977 None:intergenic 40.0%
GTCGCAGATTGAACATAAAC+TGG + chr3_1:72163960-72163979 None:intergenic 40.0%
AACTATTAGGACTGCAGAAC+AGG + chr3_1:72164023-72164042 None:intergenic 40.0%
CTTTCGCATGTTGTTAAACC+GGG - chr3_1:72164104-72164123 Msa0373140:intron 40.0%
ATGGGATGACAATAGCTCAA+TGG - chr3_1:72164277-72164296 Msa0373140:intron 40.0%
!!! CTTAGAGGCATTTTCGTAGT+TGG - chr3_1:72164474-72164493 Msa0373140:CDS 40.0%
CAGAGAGAGAAAAGGAATAC+TGG + chr3_1:72164518-72164537 None:intergenic 40.0%
GTTAACAGCAGAGAGAGAAA+AGG + chr3_1:72164526-72164545 None:intergenic 40.0%
ATTGCTTGGGAATCATCTTG+TGG + chr3_1:72164590-72164609 None:intergenic 40.0%
TGATCACACACTACCAATCT+AGG + chr3_1:72164635-72164654 None:intergenic 40.0%
!! TTGGTAGTGTGTGATCAACA+CGG - chr3_1:72164638-72164657 Msa0373140:CDS 40.0%
GGTAAGAAACAATACTGACC+TGG + chr3_1:72164667-72164686 None:intergenic 40.0%
TAGAGGAGACTGACAGTTTA+TGG - chr3_1:72164990-72165009 Msa0373140:CDS 40.0%
TGAATGCAACAGCATAATGC+AGG + chr3_1:72165059-72165078 None:intergenic 40.0%
TACAGCAGCATAGCAAATGA+GGG - chr3_1:72165258-72165277 Msa0373140:CDS 40.0%
GTGAAATGAACACTGTTGTG+TGG - chr3_1:72165506-72165525 Msa0373140:five_prime_UTR 40.0%
ATCATCAACGATGTCGGAGA+TGG - chr3_1:72159403-72159422 Msa0373140:three_prime_UTR 45.0%
GAGGATTCTACTTTGCTACG+TGG + chr3_1:72159482-72159501 None:intergenic 45.0%
! ATAAGGAAGACTGGGGGTAT+CGG + chr3_1:72159555-72159574 None:intergenic 45.0%
TGAAATCAACGCGGGAGTAA+GGG + chr3_1:72159616-72159635 None:intergenic 45.0%
TCTTAGCGGTGAAATCAACG+CGG + chr3_1:72159625-72159644 None:intergenic 45.0%
TGGACAGATCCAGATCTTAG+CGG + chr3_1:72159639-72159658 None:intergenic 45.0%
GAAATCGCGTTGTAATGAGG+TGG + chr3_1:72159686-72159705 None:intergenic 45.0%
GAGGATTAGGATCGGTATGA+GGG + chr3_1:72159766-72159785 None:intergenic 45.0%
AAGAGAAAAACAGGGGAAGG+AGG + chr3_1:72159788-72159807 None:intergenic 45.0%
CTTCTTCTAATTCTGCTGCC+AGG - chr3_1:72160029-72160048 Msa0373140:intron 45.0%
ACCACCTTTAATAGGTCTCC+TGG + chr3_1:72160050-72160069 None:intergenic 45.0%
AGACCTATTAAAGGTGGTCC+TGG - chr3_1:72160052-72160071 Msa0373140:intron 45.0%
GAAACACCGGAATTGGGAAA+AGG + chr3_1:72160097-72160116 None:intergenic 45.0%
GTGTATTCGCAATCAGAAGC+AGG + chr3_1:72160133-72160152 None:intergenic 45.0%
TGCAACACTCAATGCAACTC+CGG + chr3_1:72160312-72160331 None:intergenic 45.0%
TTGCTCAGTGCTTGTAATCC+TGG - chr3_1:72160338-72160357 Msa0373140:intron 45.0%
TGCTCAGTGCTTGTAATCCT+GGG - chr3_1:72160339-72160358 Msa0373140:intron 45.0%
ACAAACTGATATACCGTGCC+AGG + chr3_1:72160413-72160432 None:intergenic 45.0%
TCGAGCTGAATCATTACGAG+CGG - chr3_1:72160539-72160558 Msa0373140:CDS 45.0%
TGCAAAACAGCTGGTTAACC+AGG - chr3_1:72160957-72160976 Msa0373140:intron 45.0%
GCAAAACAGCTGGTTAACCA+GGG - chr3_1:72160958-72160977 Msa0373140:intron 45.0%
ATCAGATACAGTGCTCGCTA+AGG - chr3_1:72161095-72161114 Msa0373140:intron 45.0%
AATCCAGCATTTCTGCTGAG+TGG - chr3_1:72161211-72161230 Msa0373140:intron 45.0%
AAACCACTCAGCAGAAATGC+TGG + chr3_1:72161217-72161236 None:intergenic 45.0%
CATCTGGGTGTTCGTATTGA+CGG - chr3_1:72161639-72161658 Msa0373140:intron 45.0%
! GTGTTCGTATTGACGGCATT+GGG - chr3_1:72161646-72161665 Msa0373140:intron 45.0%
AGCGGATCACCGAATAACAA+CGG + chr3_1:72161751-72161770 None:intergenic 45.0%
AGAAATAACAACAGGCGAGG+AGG + chr3_1:72162251-72162270 None:intergenic 45.0%
AAGAGACGTCCCAACTATGT+TGG + chr3_1:72162328-72162347 None:intergenic 45.0%
AACATAGTTGGGACGTCTCT+TGG - chr3_1:72162327-72162346 Msa0373140:intron 45.0%
TGTAGGGAGAACAAGAGACA+AGG + chr3_1:72162431-72162450 None:intergenic 45.0%
ATGACGGTATCAGCAACAGA+AGG + chr3_1:72162717-72162736 None:intergenic 45.0%
TCTGTTGCTGATACCGTCAT+AGG - chr3_1:72162717-72162736 Msa0373140:CDS 45.0%
GAGAGGGGAACACAACAATA+TGG - chr3_1:72162739-72162758 Msa0373140:intron 45.0%
GATCGTTCAAATACTCCAGG+TGG - chr3_1:72162822-72162841 Msa0373140:intron 45.0%
TGTACCTGCAGTTCCTTACA+AGG - chr3_1:72162859-72162878 Msa0373140:intron 45.0%
! CGAAGCACTAATTGACCATC+TGG + chr3_1:72163004-72163023 None:intergenic 45.0%
!! AGATAGTGCTGTTAGCTCTG+AGG - chr3_1:72163051-72163070 Msa0373140:intron 45.0%
!! TGTTAGCTCTGAGGTAGTTC+CGG - chr3_1:72163060-72163079 Msa0373140:intron 45.0%
TTTATGTCTGTGGCTGTGGA+TGG - chr3_1:72163088-72163107 Msa0373140:intron 45.0%
ATTTGATTGCACACGGTGGT+TGG - chr3_1:72163840-72163859 Msa0373140:CDS 45.0%
ACTTAGAACAGAGGCGAATG+AGG + chr3_1:72163873-72163892 None:intergenic 45.0%
! TCGCCTCTGTTCTAAGTTTG+GGG - chr3_1:72163876-72163895 Msa0373140:CDS 45.0%
TAAGTTTGGGGATTACCGCA+AGG - chr3_1:72163888-72163907 Msa0373140:CDS 45.0%
! CGAAAGTATGCAGTCTCATC+TGG + chr3_1:72164090-72164109 None:intergenic 45.0%
AATAGCTCAATGGCGCAACT+TGG - chr3_1:72164287-72164306 Msa0373140:intron 45.0%
ATAGCTCAATGGCGCAACTT+GGG - chr3_1:72164288-72164307 Msa0373140:intron 45.0%
TCGGTTTCCTGTTCCTAGAT+TGG - chr3_1:72164619-72164638 Msa0373140:CDS 45.0%
CACACTACCAATCTAGGAAC+AGG + chr3_1:72164629-72164648 None:intergenic 45.0%
CTATCATCTGCCCTCAAGAT+TGG + chr3_1:72164973-72164992 None:intergenic 45.0%
ATCTTGAGGGCAGATGATAG+AGG - chr3_1:72164973-72164992 Msa0373140:CDS 45.0%
ATGCAGGACACACACATCAT+TGG + chr3_1:72165043-72165062 None:intergenic 45.0%
! TACGTTGAGTTTGGGCATTG+CGG - chr3_1:72165205-72165224 Msa0373140:CDS 45.0%
! TTTGGGCATTGCGGAAAGAA+AGG - chr3_1:72165214-72165233 Msa0373140:CDS 45.0%
GCATTGCGGAAAGAAAGGAT+AGG - chr3_1:72165219-72165238 Msa0373140:CDS 45.0%
CTACAGCAGCATAGCAAATG+AGG - chr3_1:72165257-72165276 Msa0373140:CDS 45.0%
TCCGTATGACATGGAACGTC+TGG - chr3_1:72159456-72159475 Msa0373140:three_prime_UTR 50.0%
GCCAGACGTTCCATGTCATA+CGG + chr3_1:72159460-72159479 None:intergenic 50.0%
GAGTGGGATAACGCATTTGG+AGG + chr3_1:72159501-72159520 None:intergenic 50.0%
AGAACGGATGAGGGAGATTG+TGG + chr3_1:72159528-72159547 None:intergenic 50.0%
ATCGGGATGAGAACGGATGA+GGG + chr3_1:72159537-72159556 None:intergenic 50.0%
TATCGGGATGAGAACGGATG+AGG + chr3_1:72159538-72159557 None:intergenic 50.0%
!! TAAGGAAGACTGGGGGTATC+GGG + chr3_1:72159554-72159573 None:intergenic 50.0%
! AGGGGTGCATAAGGAAGACT+GGG + chr3_1:72159563-72159582 None:intergenic 50.0%
!! TGGAGGTGCAGGTTTTGCAA+CGG + chr3_1:72159586-72159605 None:intergenic 50.0%
GGAGTAAGGGTTGAGAATGG+AGG + chr3_1:72159603-72159622 None:intergenic 50.0%
GTGAAATCAACGCGGGAGTA+AGG + chr3_1:72159617-72159636 None:intergenic 50.0%
CTTAGCGGTGAAATCAACGC+GGG + chr3_1:72159624-72159643 None:intergenic 50.0%
GGAGGATTAGGATCGGTATG+AGG + chr3_1:72159767-72159786 None:intergenic 50.0%
GGAAGGAGGAGGATTAGGAT+CGG + chr3_1:72159774-72159793 None:intergenic 50.0%
AGAAAAACAGGGGAAGGAGG+AGG + chr3_1:72159785-72159804 None:intergenic 50.0%
TCGGCTCTTGGTAGAGCAAT+TGG - chr3_1:72159854-72159873 Msa0373140:CDS 50.0%
CGGCTCTTGGTAGAGCAATT+GGG - chr3_1:72159855-72159874 Msa0373140:CDS 50.0%
GCTGCCAGGAGACCTATTAA+AGG - chr3_1:72160043-72160062 Msa0373140:intron 50.0%
GCCAGGAGACCTATTAAAGG+TGG - chr3_1:72160046-72160065 Msa0373140:intron 50.0%
CCTATTAAAGGTGGTCCTGG+CGG - chr3_1:72160055-72160074 Msa0373140:intron 50.0%
! GGTGCTCCTTTTCCCAATTC+CGG - chr3_1:72160088-72160107 Msa0373140:intron 50.0%
AAACGACCTGCTCGATGTAC+CGG - chr3_1:72160290-72160309 Msa0373140:intron 50.0%
! GTTGCATTGAGTGTTGCAGC+TGG - chr3_1:72160314-72160333 Msa0373140:intron 50.0%
AGTGCTTGTAATCCTGGGAC+TGG - chr3_1:72160344-72160363 Msa0373140:intron 50.0%
GTGCTTGTAATCCTGGGACT+GGG - chr3_1:72160345-72160364 Msa0373140:intron 50.0%
TGCTTGTAATCCTGGGACTG+GGG - chr3_1:72160346-72160365 Msa0373140:intron 50.0%
ATAATTCTAGCCCCAGTCCC+AGG + chr3_1:72160359-72160378 None:intergenic 50.0%
TGAGGGTCTTGCAAAACAGC+TGG - chr3_1:72160948-72160967 Msa0373140:intron 50.0%
! TGCCGGTTAGGGAGAAACAA+AGG + chr3_1:72161567-72161586 None:intergenic 50.0%
! TAGCCAAGCATTGCCGGTTA+GGG + chr3_1:72161578-72161597 None:intergenic 50.0%
CGTCAATACGAACACCCAGA+TGG + chr3_1:72161641-72161660 None:intergenic 50.0%
! GGTGTTCGTATTGACGGCAT+TGG - chr3_1:72161645-72161664 Msa0373140:intron 50.0%
GTCGCAGTTGAAAGAACTGG+TGG - chr3_1:72162052-72162071 Msa0373140:intron 50.0%
ATAACAACAGGCGAGGAGGA+GGG + chr3_1:72162247-72162266 None:intergenic 50.0%
AATAACAACAGGCGAGGAGG+AGG + chr3_1:72162248-72162267 None:intergenic 50.0%
! TGTTGGGTGCTGCAGATGAT+TGG - chr3_1:72162288-72162307 Msa0373140:intron 50.0%
TGTTGGACCTTGCACATCGA+TGG - chr3_1:72162544-72162563 Msa0373140:intron 50.0%
ACCTTGCACATCGATGGAGA+AGG - chr3_1:72162550-72162569 Msa0373140:intron 50.0%
ACCTTCTCCATCGATGTGCA+AGG + chr3_1:72162554-72162573 None:intergenic 50.0%
TGCTGATACCGTCATAGGAG+AGG - chr3_1:72162722-72162741 Msa0373140:CDS 50.0%
GCTGATACCGTCATAGGAGA+GGG - chr3_1:72162723-72162742 Msa0373140:CDS 50.0%
CTGATACCGTCATAGGAGAG+GGG - chr3_1:72162724-72162743 Msa0373140:intron 50.0%
TGTGTTCCCCTCTCCTATGA+CGG + chr3_1:72162733-72162752 None:intergenic 50.0%
GGAACTGCAGGTACAGTTGT+GGG + chr3_1:72162854-72162873 None:intergenic 50.0%
AGGAACTGCAGGTACAGTTG+TGG + chr3_1:72162855-72162874 None:intergenic 50.0%
ATTGCACACGGTGGTTGGAT+AGG - chr3_1:72163845-72163864 Msa0373140:CDS 50.0%
ACATCCAACAATGCTGGTGC+AGG + chr3_1:72164195-72164214 None:intergenic 50.0%
TGCACCAGCATTGTTGGATG+TGG - chr3_1:72164194-72164213 Msa0373140:intron 50.0%
GAAGCCACATCCAACAATGC+TGG + chr3_1:72164201-72164220 None:intergenic 50.0%
TCAGAACCAACCAGAACACC+AGG - chr3_1:72164314-72164333 Msa0373140:intron 50.0%
CACAAACCTGGTGTTCTGGT+TGG + chr3_1:72164323-72164342 None:intergenic 50.0%
TGCACACAAACCTGGTGTTC+TGG + chr3_1:72164327-72164346 None:intergenic 50.0%
! GTGGACGGTGTTTTGCTTAG+AGG - chr3_1:72164459-72164478 Msa0373140:CDS 50.0%
CTTTGAGCATCTGCAAAGGC+TGG - chr3_1:72164943-72164962 Msa0373140:CDS 50.0%
ATGGCGAACACAGATCCCGA+GGG - chr3_1:72159422-72159441 Msa0373140:three_prime_UTR 55.0%
ACAGATCCCGAGGGAATCGA+CGG - chr3_1:72159431-72159450 Msa0373140:three_prime_UTR 55.0%
TCGACGGAGTCCGTATGACA+TGG - chr3_1:72159447-72159466 Msa0373140:three_prime_UTR 55.0%
GGCGAGTGGGATAACGCATT+TGG + chr3_1:72159504-72159523 None:intergenic 55.0%
ACGGATGAGGGAGATTGTGG+CGG + chr3_1:72159525-72159544 None:intergenic 55.0%
!! TGGGGGTATCGGGATGAGAA+CGG + chr3_1:72159544-72159563 None:intergenic 55.0%
GGGTGCATAAGGAAGACTGG+GGG + chr3_1:72159561-72159580 None:intergenic 55.0%
GGGGTGCATAAGGAAGACTG+GGG + chr3_1:72159562-72159581 None:intergenic 55.0%
! GAGGGGTGCATAAGGAAGAC+TGG + chr3_1:72159564-72159583 None:intergenic 55.0%
! TTGCAACGGAGGGGTGCATA+AGG + chr3_1:72159572-72159591 None:intergenic 55.0%
! GTGCAGGTTTTGCAACGGAG+GGG + chr3_1:72159581-72159600 None:intergenic 55.0%
! GGTGCAGGTTTTGCAACGGA+GGG + chr3_1:72159582-72159601 None:intergenic 55.0%
! AGGTGCAGGTTTTGCAACGG+AGG + chr3_1:72159583-72159602 None:intergenic 55.0%
! AGGGTTGAGAATGGAGGTGC+AGG + chr3_1:72159597-72159616 None:intergenic 55.0%
GCGGGAGTAAGGGTTGAGAA+TGG + chr3_1:72159606-72159625 None:intergenic 55.0%
ACAGGGGAAGGAGGAGGATT+AGG + chr3_1:72159779-72159798 None:intergenic 55.0%
ATCCTTCGGGACTCAGGTTC+AGG - chr3_1:72159910-72159929 Msa0373140:CDS 55.0%
AACCTGAACCTGAGTCCCGA+AGG + chr3_1:72159915-72159934 None:intergenic 55.0%
CCGCCAGGACCACCTTTAAT+AGG + chr3_1:72160058-72160077 None:intergenic 55.0%
AAAGGTGGTCCTGGCGGTAT+TGG - chr3_1:72160061-72160080 Msa0373140:intron 55.0%
GATCAATGGCCTGTTCCACC+TGG - chr3_1:72160266-72160285 Msa0373140:intron 55.0%
ATGCACTGAAGGACCTGGCA+CGG - chr3_1:72160397-72160416 Msa0373140:intron 55.0%
TCTCCCTAACCGGCAATGCT+TGG - chr3_1:72161572-72161591 Msa0373140:intron 55.0%
! GTAGCCAAGCATTGCCGGTT+AGG + chr3_1:72161579-72161598 None:intergenic 55.0%
AACCGGCAATGCTTGGCTAC+AGG - chr3_1:72161579-72161598 Msa0373140:intron 55.0%
! GTCCTGTAGCCAAGCATTGC+CGG + chr3_1:72161584-72161603 None:intergenic 55.0%
GAGGATGGGGAGCAATCTCT+TGG - chr3_1:72162139-72162158 Msa0373140:intron 55.0%
! AGTTGTGGGTTGACACCACC+TGG + chr3_1:72162840-72162859 None:intergenic 55.0%
CTAATTGACCATCTGGGCCC+TGG + chr3_1:72162997-72163016 None:intergenic 55.0%
GCGACGCTCACAGTTTGTAC+AGG - chr3_1:72163975-72163994 Msa0373140:intron 55.0%
ACTGCCTGCACCAGCATTGT+TGG - chr3_1:72164188-72164207 Msa0373140:intron 55.0%
TGGCTTCCATTGCTGCAGAC+CGG - chr3_1:72164214-72164233 Msa0373140:intron 55.0%
CAGAATCCGGTCTGCAGCAA+TGG + chr3_1:72164223-72164242 None:intergenic 55.0%
GGCATGACTGCACACAAACC+TGG + chr3_1:72164335-72164354 None:intergenic 55.0%
GTGTGATCAACACGGTTCCC+AGG - chr3_1:72164646-72164665 Msa0373140:CDS 55.0%
! AGGCTGGCTGTCCAATCTTG+AGG - chr3_1:72164959-72164978 Msa0373140:CDS 55.0%
! GGCTGGCTGTCCAATCTTGA+GGG - chr3_1:72164960-72164979 Msa0373140:CDS 55.0%
GATGGCGAACACAGATCCCG+AGG - chr3_1:72159421-72159440 Msa0373140:three_prime_UTR 60.0%
!! ACGGACTCCGTCGATTCCCT+CGG + chr3_1:72159441-72159460 None:intergenic 60.0%
GGTCGTTTGCCAGGTGGAAC+AGG + chr3_1:72160278-72160297 None:intergenic 60.0%
CATCGAGCAGGTCGTTTGCC+AGG + chr3_1:72160287-72160306 None:intergenic 60.0%
GCAACTCCGGTACATCGAGC+AGG + chr3_1:72160299-72160318 None:intergenic 60.0%
GTTGGAGGGCCATGCACTGA+AGG - chr3_1:72160386-72160405 Msa0373140:intron 60.0%
GTGCCAGGTCCTTCAGTGCA+TGG + chr3_1:72160398-72160417 None:intergenic 60.0%
TGCAGTTACCAGGGCCCAGA+TGG - chr3_1:72162986-72163005 Msa0373140:intron 60.0%
AATGCGCACGAGATGGCTGC+TGG - chr3_1:72164878-72164897 Msa0373140:CDS 60.0%
!! CGGACTCCGTCGATTCCCTC+GGG + chr3_1:72159440-72159459 None:intergenic 65.0%
GGGAGATTGTGGCGGCGAGT+GGG + chr3_1:72159517-72159536 None:intergenic 65.0%
AGGGAGATTGTGGCGGCGAG+TGG + chr3_1:72159518-72159537 None:intergenic 65.0%
! GGTGGTCCTGGCGGTATTGG+TGG - chr3_1:72160064-72160083 Msa0373140:intron 65.0%
!! GGTCCTGGCGGTATTGGTGG+TGG - chr3_1:72160067-72160086 Msa0373140:intron 65.0%
GCACCACCACCAATACCGCC+AGG + chr3_1:72160073-72160092 None:intergenic 65.0%
CGAGCAGGTCGTTTGCCAGG+TGG + chr3_1:72160284-72160303 None:intergenic 65.0%
GGGCCATGCACTGAAGGACC+TGG - chr3_1:72160392-72160411 Msa0373140:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72159234 72165539 72159234 ID=Msa0373140;Name=Msa0373140
chr3_1 mRNA 72159234 72165539 72159234 ID=Msa0373140-mRNA-1;Parent=Msa0373140;Name=Msa0373140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=179|1|1|1|1|1|12|560|771
chr3_1 exon 72159234 72159940 72159234 ID=Msa0373140-mRNA-1:exon:15995;Parent=Msa0373140-mRNA-1
chr3_1 exon 72160106 72160210 72160106 ID=Msa0373140-mRNA-1:exon:15994;Parent=Msa0373140-mRNA-1
chr3_1 exon 72160438 72160701 72160438 ID=Msa0373140-mRNA-1:exon:15993;Parent=Msa0373140-mRNA-1
chr3_1 exon 72160777 72160938 72160777 ID=Msa0373140-mRNA-1:exon:15992;Parent=Msa0373140-mRNA-1
chr3_1 exon 72161279 72161356 72161279 ID=Msa0373140-mRNA-1:exon:15991;Parent=Msa0373140-mRNA-1
chr3_1 exon 72161701 72161782 72161701 ID=Msa0373140-mRNA-1:exon:15990;Parent=Msa0373140-mRNA-1
chr3_1 exon 72161893 72162065 72161893 ID=Msa0373140-mRNA-1:exon:15989;Parent=Msa0373140-mRNA-1
chr3_1 exon 72162202 72162277 72162202 ID=Msa0373140-mRNA-1:exon:15988;Parent=Msa0373140-mRNA-1
chr3_1 exon 72162600 72162742 72162600 ID=Msa0373140-mRNA-1:exon:15987;Parent=Msa0373140-mRNA-1
chr3_1 exon 72163756 72163917 72163756 ID=Msa0373140-mRNA-1:exon:15986;Parent=Msa0373140-mRNA-1
chr3_1 exon 72164355 72164528 72164355 ID=Msa0373140-mRNA-1:exon:15985;Parent=Msa0373140-mRNA-1
chr3_1 exon 72164611 72165539 72164611 ID=Msa0373140-mRNA-1:exon:15984;Parent=Msa0373140-mRNA-1
chr3_1 five_prime_UTR 72165361 72165539 72165361 ID=Msa0373140-mRNA-1:five_prime_utr;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72164611 72165360 72164611 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72164355 72164528 72164355 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72163756 72163917 72163756 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72162600 72162742 72162600 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72162202 72162277 72162202 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72161893 72162065 72161893 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72161701 72161782 72161701 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72161279 72161356 72161279 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72160777 72160938 72160777 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72160438 72160701 72160438 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72160106 72160210 72160106 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 CDS 72159794 72159940 72159794 ID=Msa0373140-mRNA-1:cds;Parent=Msa0373140-mRNA-1
chr3_1 three_prime_UTR 72159234 72159793 72159234 ID=Msa0373140-mRNA-1:three_prime_utr;Parent=Msa0373140-mRNA-1
Gene Sequence

>Msa0373140

ATGTCGGAGATGGCGAACACAGATCCCGAGGGAATCGACGGAGTCCGTATGACATGGAACGTCTGGCCACGTAGCAAAGTAGAATCCTCCAAATGCGTTATCCCACTCGCCGCCACAATCTCCCTCATCCGTTCTCATCCCGATACCCCCAGTCTTCCTTATGCACCCCTCCGTTGCAAAACCTGCACCTCCATTCTCAACCCTTACTCCCGCGTTGATTTCACCGCTAAGATCTGGATCTGTCCATTTTGTTATCAACGGAACCATTTTCCACCTCATTACAACGCGATTTCTGAAACTCATCTCCCTGGTGAACTCTATCCTCAATACACCACCGTTGAATATCATATCCCTCATACCGATCCTAATCCTCCTCCTTCCCCTGTTTTTCTCTTTCTGCTTGATACTTGTATCATCGAAGAAGAGATTAATTATCTCAAATCGGCTCTTGGTAGAGCAATTGGGCTTTTACCTGATAATGCTCTTGTTGGATTTTTATCCTTCGGGACTCAGGTTCAGGTTCATGAATTGGGATTTTCTGATATGTCTAAAGTTTATGTTTTTCGCGGCTCCAAAGAGATTTCCAAAGATCAGATTTTGGAACAATTGGGTCTTGCTTCTTCTAATTCTGCTGCCAGGAGACCTATTAAAGGTGGTCCTGGCGGTATTGGTGGTGGTGCTCCTTTTCCCAATTCCGGTGTTTCACGATTTTTGTTGCCTGCTTCTGATTGCGAATACACTCTCAATGCGCTGTTGGAGGAATTGCAGAGAGATCAATGGCCTGTTCCACCTGGCAAACGACCTGCTCGATGTACCGGAGTTGCATTGAGTGTTGCAGCTGGATTGCTCAGTGCTTGTAATCCTGGGACTGGGGCTAGAATTATAGCTTTGGTTGGAGGGCCATGCACTGAAGGACCTGGCACGATTGTGTCGAAAGAACTATCTGACCCAGTGCGTTCTCATAAAGATCTTGATAAAGATGCGGCACCTTACTTTAAGAAAGCAGTGAAGTTTTATGAGGGTCTTGCAAAACAGCTGGTTAACCAGGGTCATGTTTTAGATCTTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTCGCAGTTGAAAGAACTGGTGGCCTTGTTGTCCTGTCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCGTGTTTTTGAGGATGGGGAGCAATCTCTTGGTCTCTGTTTCAATGGGACCCTTGAGATAAATTGCTCAAAGGAAATCAAAATTCAGGGAATTGTTGGACCTTGCACATCGATGGAGAAGAAAGGACCTTCTGTTGCTGATACCGTCATAGGAGAGGGGAACACAACAATATGGAAGATGTGTGGTCTTGACAAGAGTACATGCTTGACTGTGATGTTTGATCTTTCATCAAGTGATCGTTCAAATACTCCAGGTGGTGTCAACCCACAACTGTACCTGCAGTTCCTTACAAGTTACCAGGGCCCAGATGGTCAATTAGTGCTTCGTGCGACAACAGTAACTAGAAGATGGGTAGATAGTGCTGTTAGCTCTGAGGAATTGGCTCAAGGATTTGACCAAGAAACTGCTGCAGTTGTAATGGCTAGATATGCTTCTCTGAAAATGGAGACAGAGGAAACATTTGATTGCACACGGTGGTTGGATAGGTTCCTCATTCGCCTCTGTTCTAAGTTTGGGGATTACCGCAAGGATGATCCATCATCTTTTACATTAAATCCATCATTTTCTCTTTTCCCCCAGTTTATGTTCAATCTGCGACGCTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGATGAGACTGCATACTTTCGCATGTTGTTAAACCGGGAAAATATTAATAATGCGGCTGTCATGATTCAGCCATCACTAATATCATATTCATTTAATTCACTGCCTGCACCAGCATTGTTGGATGTGGCTTCCATTGCTGCAGACCGGATTCTGTTGCTAGATTCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATATCAGAACCAACCAGAACACCAGGCTTTTGCACAACTGTTACGAGCTCCACAAGATGATTCCCAAGCAATAATTAGAGATCGGTTTCCTGTTCCTAGATTGGTAGTGTGTGATCAACACGGTTCCCAGGCTAGATTTTTATTAGCAAAACTGAATCCGTCAGCAACATATAATAATGCGCACGAGATGGCTGCTGGTTCAGATGTAATCTTTACTGATGATGTTAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGCTGGCTGTCCAATCTTGA
Protein sequence

>Msa0373140

MSEMANTDPEGIDGVRMTWNVWPRSKVESSKCVIPLAATISLIRSHPDTPSLPYAPLRCKTCTSILNPYSRVDFTAKIWICPFCYQRNHFPPHYNAISETHLPGELYPQYTTVEYHIPHTDPNPPPSPVFLFLLDTCIIEEEINYLKSALGRAIGLLPDNALVGFLSFGTQVQVHELGFSDMSKVYVFRGSKEISKDQILEQLGLASSNSAARRPIKGGPGGIGGGAPFPNSGVSRFLLPASDCEYTLNALLEELQRDQWPVPPGKRPARCTGVALSVAAGLLSACNPGTGARIIALVGGPCTEGPGTIVSKELSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVNQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIVGPCTSMEKKGPSVADTVIGEGNTTIWKMCGLDKSTCLTVMFDLSSSDRSNTPGGVNPQLYLQFLTSYQGPDGQLVLRATTVTRRWVDSAVSSEELAQGFDQETAAVVMARYASLKMETEETFDCTRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENINNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPQDDSQAIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS*