Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239560 | XP_014517025.1 | 86.957 | 92 | 12 | 0 | 1 | 92 | 1 | 92 | 6.53e-46 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239560 | A0A1S3VFH2 | 86.957 | 92 | 12 | 0 | 1 | 92 | 1 | 92 | 3.12e-46 | 158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017300 | Msa0239560 | -0.816072 | 6.677105e-52 | -8.615850e-47 |
| Msa0025570 | Msa0239560 | 0.802819 | 4.682382e-49 | -8.615850e-47 |
| Msa0037180 | Msa0239560 | 0.853495 | 2.301272e-61 | -8.615850e-47 |
| Msa0073110 | Msa0239560 | 0.810079 | 1.377264e-50 | -8.615850e-47 |
| Msa0092220 | Msa0239560 | 0.851172 | 1.055377e-60 | -8.615850e-47 |
| Msa0143590 | Msa0239560 | 0.802186 | 6.322835e-49 | -8.615850e-47 |
| Msa0177320 | Msa0239560 | 0.854383 | 1.276811e-61 | -8.615850e-47 |
| Msa0216150 | Msa0239560 | -0.815404 | 9.405529e-52 | -8.615850e-47 |
| Msa0239560 | Msa0256540 | 0.808314 | 3.291764e-50 | -8.615850e-47 |
| Msa0239560 | Msa0285420 | 0.809369 | 1.958222e-50 | -8.615850e-47 |
| Msa0239560 | Msa0290800 | 0.813241 | 2.828324e-51 | -8.615850e-47 |
| Msa0239560 | Msa0298000 | 0.801643 | 8.174204e-49 | -8.615850e-47 |
| Msa0239560 | Msa0303900 | 0.800710 | 1.268706e-48 | -8.615850e-47 |
| Msa0239560 | Msa0318490 | 0.845312 | 4.392503e-59 | -8.615850e-47 |
| Msa0239560 | Msa0324220 | 0.809396 | 1.932316e-50 | -8.615850e-47 |
| Msa0239560 | Msa0328870 | 0.825104 | 5.623754e-54 | -8.615850e-47 |
| Msa0239560 | Msa0331070 | -0.805970 | 1.032074e-49 | -8.615850e-47 |
| Msa0239560 | Msa0333770 | 0.816962 | 4.219678e-52 | -8.615850e-47 |
| Msa0239560 | Msa0334320 | 0.802793 | 4.738983e-49 | -8.615850e-47 |
| Msa0239560 | Msa0354600 | 0.800596 | 1.338319e-48 | -8.615850e-47 |
| Msa0239560 | Msa0358470 | 0.807232 | 5.588721e-50 | -8.615850e-47 |
| Msa0239560 | Msa0364030 | -0.807628 | 4.606519e-50 | -8.615850e-47 |
| Msa0239560 | Msa0373140 | 0.820511 | 6.598707e-53 | -8.615850e-47 |
| Msa0239560 | Msa0380110 | 0.812366 | 4.395468e-51 | -8.615850e-47 |
| Msa0239560 | Msa0386880 | 0.843588 | 1.277327e-58 | -8.615850e-47 |
| Msa0239560 | Msa0386890 | 0.814900 | 1.217009e-51 | -8.615850e-47 |
| Msa0239560 | Msa0399820 | 0.811228 | 7.774874e-51 | -8.615850e-47 |
| Msa0239560 | Msa0403740 | -0.810187 | 1.305791e-50 | -8.615850e-47 |
| Msa0239560 | Msa0428210 | 0.804543 | 2.053946e-49 | -8.615850e-47 |
| Msa0239560 | Msa0429600 | 0.801666 | 8.084551e-49 | -8.615850e-47 |
| Msa0239560 | Msa0448290 | 0.803819 | 2.905755e-49 | -8.615850e-47 |
| Msa0239560 | Msa0456450 | -0.805324 | 1.410146e-49 | -8.615850e-47 |
| Msa0239560 | Msa0501080 | 0.828931 | 6.833060e-55 | -8.615850e-47 |
| Msa0239560 | Msa0525880 | 0.805873 | 1.081687e-49 | -8.615850e-47 |
| Msa0239560 | Msa0563440 | 0.806405 | 8.360038e-50 | -8.615850e-47 |
| Msa0239560 | Msa0567330 | 0.817297 | 3.546833e-52 | -8.615850e-47 |
| Msa0239560 | Msa0576320 | 0.808048 | 3.750718e-50 | -8.615850e-47 |
| Msa0239560 | Msa0610700 | -0.819316 | 1.238259e-52 | -8.615850e-47 |
| Msa0239560 | Msa0618700 | 0.801370 | 9.295844e-49 | -8.615850e-47 |
| Msa0239560 | Msa0682110 | 0.837733 | 4.367228e-57 | -8.615850e-47 |
| Msa0239560 | Msa0682160 | 0.841136 | 5.704731e-58 | -8.615850e-47 |
| Msa0239560 | Msa0686830 | 0.805517 | 1.285117e-49 | -8.615850e-47 |
| Msa0239560 | Msa0725580 | 0.820913 | 5.334573e-53 | -8.615850e-47 |
| Msa0239560 | Msa0755880 | 0.806140 | 9.505514e-50 | -8.615850e-47 |
| Msa0239560 | Msa0831800 | 0.819269 | 1.268902e-52 | -8.615850e-47 |
| Msa0239560 | Msa0842750 | 0.811635 | 6.342798e-51 | -8.615850e-47 |
| Msa0239560 | Msa0873880 | 0.825020 | 5.884384e-54 | -8.615850e-47 |
| Msa0239560 | Msa0873910 | 0.808442 | 3.091313e-50 | -8.615850e-47 |
| Msa0239560 | Msa0873940 | 0.806047 | 9.943674e-50 | -8.615850e-47 |
| Msa0239560 | Msa0906680 | 0.804980 | 1.664475e-49 | -8.615850e-47 |
| Msa0239560 | Msa0969380 | 0.800525 | 1.383493e-48 | -8.615850e-47 |
| Msa0239560 | Msa0969720 | 0.805041 | 1.616165e-49 | -8.615850e-47 |
| Msa0239560 | Msa0975960 | 0.821724 | 3.468115e-53 | -8.615850e-47 |
| Msa0239560 | Msa1013190 | 0.802445 | 5.592610e-49 | -8.615850e-47 |
| Msa0239560 | Msa1014550 | -0.815997 | 6.939234e-52 | -8.615850e-47 |
| Msa0239560 | Msa1052000 | 0.809760 | 1.613427e-50 | -8.615850e-47 |
| Msa0239560 | Msa1055520 | -0.822049 | 2.916338e-53 | -8.615850e-47 |
| Msa0239560 | Msa1068940 | 0.802740 | 4.861490e-49 | -8.615850e-47 |
| Msa0239560 | Msa1078760 | -0.800795 | 1.218688e-48 | -8.615850e-47 |
| Msa0239560 | Msa1096760 | 0.802457 | 5.560947e-49 | -8.615850e-47 |
| Msa0239560 | Msa1129120 | -0.807404 | 5.140057e-50 | -8.615850e-47 |
| Msa0239560 | Msa1140410 | 0.814097 | 1.831964e-51 | -8.615850e-47 |
| Msa0239560 | Msa1184680 | 0.812163 | 4.868047e-51 | -8.615850e-47 |
| Msa0239560 | Msa1202470 | 0.825706 | 4.049065e-54 | -8.615850e-47 |
| Msa0239560 | Msa1205270 | -0.811932 | 5.467376e-51 | -8.615850e-47 |
| Msa0239560 | Msa1240490 | 0.825676 | 4.116834e-54 | -8.615850e-47 |
| Msa0239560 | Msa1249600 | 0.825138 | 5.518762e-54 | -8.615850e-47 |
| Msa0239560 | Msa1254910 | 0.819172 | 1.335537e-52 | -8.615850e-47 |
| Msa0239560 | Msa1281780 | 0.804010 | 2.652576e-49 | -8.615850e-47 |
| Msa0239560 | Msa1284020 | 0.830062 | 3.628810e-55 | -8.615850e-47 |
| Msa0239560 | Msa1304790 | 0.846963 | 1.561091e-59 | -8.615850e-47 |
| Msa0239560 | Msa1322980 | 0.800556 | 1.363638e-48 | -8.615850e-47 |
| Msa0239560 | Msa1326180 | 0.822193 | 2.700597e-53 | -8.615850e-47 |
| Msa0239560 | Msa1342360 | -0.804924 | 1.710490e-49 | -8.615850e-47 |
| Msa0239560 | Msa1361040 | 0.806012 | 1.011248e-49 | -8.615850e-47 |
| Msa0239560 | Msa1361980 | 0.825224 | 5.266685e-54 | -8.615850e-47 |
| Msa0239560 | Msa1365820 | 0.836116 | 1.129820e-56 | -8.615850e-47 |
| Msa0239560 | Msa1368390 | 0.831985 | 1.223401e-55 | -8.615850e-47 |
| Msa0239560 | Msa1368400 | 0.814737 | 1.322837e-51 | -8.615850e-47 |
| Msa0239560 | Msa1372000 | 0.816655 | 4.945274e-52 | -8.615850e-47 |
| Msa0239560 | Msa1375130 | 0.822605 | 2.166392e-53 | -8.615850e-47 |
| Msa0239560 | Msa1388720 | -0.805934 | 1.050034e-49 | -8.615850e-47 |
| Msa0239560 | Msa1407810 | 0.805255 | 1.457885e-49 | -8.615850e-47 |
| Msa0239560 | Msa1413150 | 0.816344 | 5.805713e-52 | -8.615850e-47 |
| Msa0239560 | Msa1429470 | 0.816449 | 5.497832e-52 | -8.615850e-47 |
| Msa0239560 | Msa1433360 | 0.806491 | 8.015594e-50 | -8.615850e-47 |
| Msa0239560 | Msa1437780 | 0.804349 | 2.254357e-49 | -8.615850e-47 |
| Msa0239560 | Msa1453430 | 0.840333 | 9.262057e-58 | -8.615850e-47 |
| Msa0239560 | Msa1457770 | 0.825358 | 4.896255e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239560 | MtrunA17_Chr2g0290461 | 98.684 | 76 | 1 | 0 | 1 | 76 | 1 | 76 | 2.65e-47 | 151 |
| Msa0239560 | MtrunA17_Chr4g0076261 | 80.556 | 72 | 14 | 0 | 4 | 75 | 8 | 79 | 3.64e-33 | 115 |
| Msa0239560 | MtrunA17_Chr7g0236071 | 73.333 | 75 | 20 | 0 | 1 | 75 | 1 | 75 | 1.08e-24 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239560 | AT4G16380.1 | 74.324 | 74 | 19 | 0 | 3 | 76 | 7 | 80 | 9.83e-33 | 114 |
| Msa0239560 | AT4G16380.3 | 72.603 | 73 | 20 | 0 | 4 | 76 | 15 | 87 | 1.11e-31 | 112 |
| Msa0239560 | AT1G51090.1 | 60.526 | 76 | 30 | 0 | 1 | 76 | 1 | 76 | 2.71e-27 | 98.2 |
| Msa0239560 | AT1G49420.1 | 58.974 | 78 | 31 | 1 | 3 | 79 | 7 | 84 | 1.26e-24 | 92.0 |
| Msa0239560 | AT4G16380.2 | 73.333 | 45 | 12 | 0 | 32 | 76 | 15 | 59 | 2.84e-16 | 71.2 |
Find 30 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGAAATTCAAACCTTAT+AGG | 0.213673 | 2_2:-14029005 | Msa0239560:five_prime_UTR |
| TTGCTTTGTCATCATACTTT+TGG | 0.238102 | 2_2:+14028320 | None:intergenic |
| GACTCAGCTGGTTTGGGCTT+TGG | 0.238535 | 2_2:+14028193 | None:intergenic |
| TTCTCGGACTCAGCTGGTTT+GGG | 0.239304 | 2_2:+14028187 | None:intergenic |
| CTTCTCGGACTCAGCTGGTT+TGG | 0.246232 | 2_2:+14028186 | None:intergenic |
| CAAGAAATTCAAACCTTATA+GGG | 0.285885 | 2_2:-14029004 | Msa0239560:five_prime_UTR |
| AGCAGAGAAACAACACAAAA+TGG | 0.336414 | 2_2:+14028921 | None:intergenic |
| GTTGTAGTCCTGAGAAGATT+AGG | 0.368435 | 2_2:-14028273 | Msa0239560:CDS |
| AGCTGAGTCCGAGAAGAAAA+AGG | 0.368826 | 2_2:-14028179 | Msa0239560:CDS |
| ATAAACATGTAGGCCCTATA+AGG | 0.393156 | 2_2:+14028991 | None:intergenic |
| TTGTAGTCCTGAGAAGATTA+GGG | 0.426247 | 2_2:-14028272 | Msa0239560:CDS |
| AGAAATGCTACAAGAAGGTT+AGG | 0.427970 | 2_2:-14028564 | Msa0239560:CDS |
| TCAGCTGGTTTGGGCTTTGG+CGG | 0.463353 | 2_2:+14028196 | None:intergenic |
| TATCAAGAGTATTGAAATAG+TGG | 0.464638 | 2_2:-14028221 | Msa0239560:CDS |
| ATCGACAACCATGGCTGAAA+AGG | 0.467264 | 2_2:-14028844 | Msa0239560:intron |
| TTATTCAGGTGACCATTATG+AGG | 0.467676 | 2_2:-14028609 | Msa0239560:intron |
| AGCTTGTCCCTAATCTTCTC+AGG | 0.499784 | 2_2:+14028265 | None:intergenic |
| ATCAACCTTGAGCCTCATAA+TGG | 0.505835 | 2_2:+14028597 | None:intergenic |
| AGGGACAAGCTTTGTTACAA+AGG | 0.533858 | 2_2:-14028253 | Msa0239560:CDS |
| AAGCTTTGTTACAAAGGTGG+AGG | 0.555529 | 2_2:-14028247 | Msa0239560:CDS |
| GACAAGCTTTGTTACAAAGG+TGG | 0.583958 | 2_2:-14028250 | Msa0239560:CDS |
| GGTGACCATTATGAGGCTCA+AGG | 0.605189 | 2_2:-14028602 | Msa0239560:CDS |
| GTGTGAGAAATGCTACAAGA+AGG | 0.610703 | 2_2:-14028569 | Msa0239560:CDS |
| AGATTGTTGATAGACAGTGT+TGG | 0.619844 | 2_2:+14029030 | None:intergenic |
| AGCTTAATACATAAACATGT+AGG | 0.630199 | 2_2:+14028981 | None:intergenic |
| AGCAAACATTGTGACAATCA+CGG | 0.650689 | 2_2:-14028302 | Msa0239560:CDS |
| AGATCTCTGATCGACAACCA+TGG | 0.651264 | 2_2:-14028853 | Msa0239560:exon |
| TAGGCGTGTAAATCAAAAGA+CGG | 0.656958 | 2_2:-14029175 | None:intergenic |
| TCGATCAGAGATCTGATCTG+AGG | 0.666948 | 2_2:+14028862 | None:intergenic |
| AAACATTGTGACAATCACGG+TGG | 0.804631 | 2_2:-14028299 | Msa0239560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACAATTAAAATTATACAT+AGG | + | chr2_2:14028689-14028708 | None:intergenic | 15.0% |
| !!! | TTAATTGTTGATTTTTATTC+AGG | - | chr2_2:14028699-14028718 | Msa0239560:intron | 15.0% |
| !!! | TATTGTTTTATTAGAATTTG+TGG | - | chr2_2:14028861-14028880 | Msa0239560:five_prime_UTR | 15.0% |
| !! | ATTTACCAAAAAAATGTAAA+AGG | - | chr2_2:14028917-14028936 | Msa0239560:five_prime_UTR | 15.0% |
| !!! | TATATCCTTTTACATTTTTT+TGG | + | chr2_2:14028925-14028944 | None:intergenic | 15.0% |
| !!! | TATAAAATTGAGCTAATTTT+TGG | - | chr2_2:14028941-14028960 | Msa0239560:five_prime_UTR | 15.0% |
| !!! | ATAAAATTGAGCTAATTTTT+GGG | - | chr2_2:14028942-14028961 | Msa0239560:five_prime_UTR | 15.0% |
| !! | CAACAATTAAAATTATACAT+AGG | + | chr2_2:14028689-14028708 | None:intergenic | 15.0% |
| !!! | TTAATTGTTGATTTTTATTC+AGG | - | chr2_2:14028699-14028718 | Msa0239560:intron | 15.0% |
| !!! | TATTGTTTTATTAGAATTTG+TGG | - | chr2_2:14028861-14028880 | Msa0239560:five_prime_UTR | 15.0% |
| !! | ATTTACCAAAAAAATGTAAA+AGG | - | chr2_2:14028917-14028936 | Msa0239560:five_prime_UTR | 15.0% |
| !!! | TATATCCTTTTACATTTTTT+TGG | + | chr2_2:14028925-14028944 | None:intergenic | 15.0% |
| !!! | TATAAAATTGAGCTAATTTT+TGG | - | chr2_2:14028941-14028960 | Msa0239560:five_prime_UTR | 15.0% |
| !!! | ATAAAATTGAGCTAATTTTT+GGG | - | chr2_2:14028942-14028961 | Msa0239560:five_prime_UTR | 15.0% |
| !! | AATAAAAGAATGTCTTCATA+TGG | + | chr2_2:14028639-14028658 | None:intergenic | 20.0% |
| !! | AATAAAAGAATGTCTTCATA+TGG | + | chr2_2:14028639-14028658 | None:intergenic | 20.0% |
| ! | ACAAGAAATTCAAACCTTAT+AGG | - | chr2_2:14028317-14028336 | Msa0239560:CDS | 25.0% |
| ! | CAAGAAATTCAAACCTTATA+GGG | - | chr2_2:14028318-14028337 | Msa0239560:CDS | 25.0% |
| ! | AGCTTAATACATAAACATGT+AGG | + | chr2_2:14028344-14028363 | None:intergenic | 25.0% |
| !! | ATCATAAATTTGTTTCACCA+TGG | - | chr2_2:14028662-14028681 | Msa0239560:intron | 25.0% |
| ! | TAAAATTATACATAGGACCA+TGG | + | chr2_2:14028682-14028701 | None:intergenic | 25.0% |
| ! | ATAGTTAGAAATGAAAGTAG+AGG | + | chr2_2:14028818-14028837 | None:intergenic | 25.0% |
| ! | TAAAAACACTTGTATGCATT+TGG | - | chr2_2:14028894-14028913 | Msa0239560:five_prime_UTR | 25.0% |
| !!! | TATCAAGAGTATTGAAATAG+TGG | - | chr2_2:14029101-14029120 | Msa0239560:five_prime_UTR | 25.0% |
| ! | ACAAGAAATTCAAACCTTAT+AGG | - | chr2_2:14028317-14028336 | Msa0239560:CDS | 25.0% |
| ! | CAAGAAATTCAAACCTTATA+GGG | - | chr2_2:14028318-14028337 | Msa0239560:CDS | 25.0% |
| ! | AGCTTAATACATAAACATGT+AGG | + | chr2_2:14028344-14028363 | None:intergenic | 25.0% |
| !! | ATCATAAATTTGTTTCACCA+TGG | - | chr2_2:14028662-14028681 | Msa0239560:intron | 25.0% |
| ! | TAAAATTATACATAGGACCA+TGG | + | chr2_2:14028682-14028701 | None:intergenic | 25.0% |
| ! | ATAGTTAGAAATGAAAGTAG+AGG | + | chr2_2:14028818-14028837 | None:intergenic | 25.0% |
| ! | TAAAAACACTTGTATGCATT+TGG | - | chr2_2:14028894-14028913 | Msa0239560:five_prime_UTR | 25.0% |
| !!! | TATCAAGAGTATTGAAATAG+TGG | - | chr2_2:14029101-14029120 | Msa0239560:five_prime_UTR | 25.0% |
| ! | TGACAATCATGTGTTTGTTT+TGG | + | chr2_2:14028550-14028569 | None:intergenic | 30.0% |
| ! | TTGCTTTGTCATCATACTTT+TGG | + | chr2_2:14029005-14029024 | None:intergenic | 30.0% |
| ! | TGACAATCATGTGTTTGTTT+TGG | + | chr2_2:14028550-14028569 | None:intergenic | 30.0% |
| ! | TTGCTTTGTCATCATACTTT+TGG | + | chr2_2:14029005-14029024 | None:intergenic | 30.0% |
| ! | GGTTTTTGCTAGAACTGAAA+GGG | + | chr2_2:14028274-14028293 | None:intergenic | 35.0% |
| ! | TGGTTTTTGCTAGAACTGAA+AGG | + | chr2_2:14028275-14028294 | None:intergenic | 35.0% |
| ! | AGATTGTTGATAGACAGTGT+TGG | + | chr2_2:14028295-14028314 | None:intergenic | 35.0% |
| ATAAACATGTAGGCCCTATA+AGG | + | chr2_2:14028334-14028353 | None:intergenic | 35.0% | |
| AGCAGAGAAACAACACAAAA+TGG | + | chr2_2:14028404-14028423 | None:intergenic | 35.0% | |
| TTATTCAGGTGACCATTATG+AGG | - | chr2_2:14028713-14028732 | Msa0239560:intron | 35.0% | |
| AGAAATGCTACAAGAAGGTT+AGG | - | chr2_2:14028758-14028777 | Msa0239560:intron | 35.0% | |
| AGCAAACATTGTGACAATCA+CGG | - | chr2_2:14029020-14029039 | Msa0239560:five_prime_UTR | 35.0% | |
| TTGTAGTCCTGAGAAGATTA+GGG | - | chr2_2:14029050-14029069 | Msa0239560:five_prime_UTR | 35.0% | |
| ! | GGTTTTTGCTAGAACTGAAA+GGG | + | chr2_2:14028274-14028293 | None:intergenic | 35.0% |
| ! | TGGTTTTTGCTAGAACTGAA+AGG | + | chr2_2:14028275-14028294 | None:intergenic | 35.0% |
| ! | AGATTGTTGATAGACAGTGT+TGG | + | chr2_2:14028295-14028314 | None:intergenic | 35.0% |
| ATAAACATGTAGGCCCTATA+AGG | + | chr2_2:14028334-14028353 | None:intergenic | 35.0% | |
| AGCAGAGAAACAACACAAAA+TGG | + | chr2_2:14028404-14028423 | None:intergenic | 35.0% | |
| TTATTCAGGTGACCATTATG+AGG | - | chr2_2:14028713-14028732 | Msa0239560:intron | 35.0% | |
| AGAAATGCTACAAGAAGGTT+AGG | - | chr2_2:14028758-14028777 | Msa0239560:intron | 35.0% | |
| AGCAAACATTGTGACAATCA+CGG | - | chr2_2:14029020-14029039 | Msa0239560:five_prime_UTR | 35.0% | |
| TTGTAGTCCTGAGAAGATTA+GGG | - | chr2_2:14029050-14029069 | Msa0239560:five_prime_UTR | 35.0% | |
| ! | ACACTTTACCTTTTCAGCCA+TGG | + | chr2_2:14028489-14028508 | None:intergenic | 40.0% |
| ATCAACCTTGAGCCTCATAA+TGG | + | chr2_2:14028728-14028747 | None:intergenic | 40.0% | |
| GTGTGAGAAATGCTACAAGA+AGG | - | chr2_2:14028753-14028772 | Msa0239560:intron | 40.0% | |
| AAACATTGTGACAATCACGG+TGG | - | chr2_2:14029023-14029042 | Msa0239560:five_prime_UTR | 40.0% | |
| GTTGTAGTCCTGAGAAGATT+AGG | - | chr2_2:14029049-14029068 | Msa0239560:five_prime_UTR | 40.0% | |
| !! | AGGGACAAGCTTTGTTACAA+AGG | - | chr2_2:14029069-14029088 | Msa0239560:five_prime_UTR | 40.0% |
| !! | GACAAGCTTTGTTACAAAGG+TGG | - | chr2_2:14029072-14029091 | Msa0239560:five_prime_UTR | 40.0% |
| !! | AAGCTTTGTTACAAAGGTGG+AGG | - | chr2_2:14029075-14029094 | Msa0239560:five_prime_UTR | 40.0% |
| ! | ACACTTTACCTTTTCAGCCA+TGG | + | chr2_2:14028489-14028508 | None:intergenic | 40.0% |
| ATCAACCTTGAGCCTCATAA+TGG | + | chr2_2:14028728-14028747 | None:intergenic | 40.0% | |
| GTGTGAGAAATGCTACAAGA+AGG | - | chr2_2:14028753-14028772 | Msa0239560:intron | 40.0% | |
| AAACATTGTGACAATCACGG+TGG | - | chr2_2:14029023-14029042 | Msa0239560:five_prime_UTR | 40.0% | |
| GTTGTAGTCCTGAGAAGATT+AGG | - | chr2_2:14029049-14029068 | Msa0239560:five_prime_UTR | 40.0% | |
| !! | AGGGACAAGCTTTGTTACAA+AGG | - | chr2_2:14029069-14029088 | Msa0239560:five_prime_UTR | 40.0% |
| !! | GACAAGCTTTGTTACAAAGG+TGG | - | chr2_2:14029072-14029091 | Msa0239560:five_prime_UTR | 40.0% |
| !! | AAGCTTTGTTACAAAGGTGG+AGG | - | chr2_2:14029075-14029094 | Msa0239560:five_prime_UTR | 40.0% |
| TCGATCAGAGATCTGATCTG+AGG | + | chr2_2:14028463-14028482 | None:intergenic | 45.0% | |
| AGATCTCTGATCGACAACCA+TGG | - | chr2_2:14028469-14028488 | Msa0239560:intron | 45.0% | |
| ATCGACAACCATGGCTGAAA+AGG | - | chr2_2:14028478-14028497 | Msa0239560:intron | 45.0% | |
| TAGAGGTGATGAACTCACGA+GGG | + | chr2_2:14028801-14028820 | None:intergenic | 45.0% | |
| AGCTTGTCCCTAATCTTCTC+AGG | + | chr2_2:14029060-14029079 | None:intergenic | 45.0% | |
| ! | TTTTTCTTCTCGGACTCAGC+TGG | + | chr2_2:14029144-14029163 | None:intergenic | 45.0% |
| AGCTGAGTCCGAGAAGAAAA+AGG | - | chr2_2:14029143-14029162 | Msa0239560:five_prime_UTR | 45.0% | |
| GAGTCCGAGAAGAAAAAGGA+AGG | - | chr2_2:14029147-14029166 | Msa0239560:five_prime_UTR | 45.0% | |
| ! | CTCGCCTTCCTTTTTCTTCT+CGG | + | chr2_2:14029154-14029173 | None:intergenic | 45.0% |
| TCGATCAGAGATCTGATCTG+AGG | + | chr2_2:14028463-14028482 | None:intergenic | 45.0% | |
| AGATCTCTGATCGACAACCA+TGG | - | chr2_2:14028469-14028488 | Msa0239560:intron | 45.0% | |
| ATCGACAACCATGGCTGAAA+AGG | - | chr2_2:14028478-14028497 | Msa0239560:intron | 45.0% | |
| TAGAGGTGATGAACTCACGA+GGG | + | chr2_2:14028801-14028820 | None:intergenic | 45.0% | |
| AGCTTGTCCCTAATCTTCTC+AGG | + | chr2_2:14029060-14029079 | None:intergenic | 45.0% | |
| ! | TTTTTCTTCTCGGACTCAGC+TGG | + | chr2_2:14029144-14029163 | None:intergenic | 45.0% |
| AGCTGAGTCCGAGAAGAAAA+AGG | - | chr2_2:14029143-14029162 | Msa0239560:five_prime_UTR | 45.0% | |
| GAGTCCGAGAAGAAAAAGGA+AGG | - | chr2_2:14029147-14029166 | Msa0239560:five_prime_UTR | 45.0% | |
| ! | CTCGCCTTCCTTTTTCTTCT+CGG | + | chr2_2:14029154-14029173 | None:intergenic | 45.0% |
| GGTGACCATTATGAGGCTCA+AGG | - | chr2_2:14028720-14028739 | Msa0239560:intron | 50.0% | |
| GTAGAGGTGATGAACTCACG+AGG | + | chr2_2:14028802-14028821 | None:intergenic | 50.0% | |
| ! | TTCTCGGACTCAGCTGGTTT+GGG | + | chr2_2:14029138-14029157 | None:intergenic | 50.0% |
| GGTGACCATTATGAGGCTCA+AGG | - | chr2_2:14028720-14028739 | Msa0239560:intron | 50.0% | |
| GTAGAGGTGATGAACTCACG+AGG | + | chr2_2:14028802-14028821 | None:intergenic | 50.0% | |
| ! | TTCTCGGACTCAGCTGGTTT+GGG | + | chr2_2:14029138-14029157 | None:intergenic | 50.0% |
| !! | TCAGCTGGTTTGGGCTTTGG+CGG | + | chr2_2:14029129-14029148 | None:intergenic | 55.0% |
| !! | GACTCAGCTGGTTTGGGCTT+TGG | + | chr2_2:14029132-14029151 | None:intergenic | 55.0% |
| CTTCTCGGACTCAGCTGGTT+TGG | + | chr2_2:14029139-14029158 | None:intergenic | 55.0% | |
| !! | TCAGCTGGTTTGGGCTTTGG+CGG | + | chr2_2:14029129-14029148 | None:intergenic | 55.0% |
| !! | GACTCAGCTGGTTTGGGCTT+TGG | + | chr2_2:14029132-14029151 | None:intergenic | 55.0% |
| CTTCTCGGACTCAGCTGGTT+TGG | + | chr2_2:14029139-14029158 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 14028153 | 14029191 | 14028153 | ID=Msa0239560;Name=Msa0239560 |
| chr2_2 | mRNA | 14028153 | 14029191 | 14028153 | ID=Msa0239560-mRNA-1;Parent=Msa0239560;Name=Msa0239560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=335|1|1|1|1|1|3|0|98 |
| chr2_2 | exon | 14028153 | 14028352 | 14028153 | ID=Msa0239560-mRNA-1:exon:5841;Parent=Msa0239560-mRNA-1 |
| chr2_2 | exon | 14028542 | 14028623 | 14028542 | ID=Msa0239560-mRNA-1:exon:5840;Parent=Msa0239560-mRNA-1 |
| chr2_2 | exon | 14028845 | 14029191 | 14028845 | ID=Msa0239560-mRNA-1:exon:5839;Parent=Msa0239560-mRNA-1 |
| chr2_2 | five_prime_UTR | 14028857 | 14029191 | 14028857 | ID=Msa0239560-mRNA-1:five_prime_utr;Parent=Msa0239560-mRNA-1 |
| chr2_2 | CDS | 14028845 | 14028856 | 14028845 | ID=Msa0239560-mRNA-1:cds;Parent=Msa0239560-mRNA-1 |
| chr2_2 | CDS | 14028542 | 14028623 | 14028542 | ID=Msa0239560-mRNA-1:cds;Parent=Msa0239560-mRNA-1 |
| chr2_2 | CDS | 14028153 | 14028352 | 14028153 | ID=Msa0239560-mRNA-1:cds;Parent=Msa0239560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
