AlfalfaGEDB | Msa0374860

M. sativa cultivar zhongmu-4 / Msa0374860

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007
PFAM: PF00790.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374860	XP_013461343.1	98.422	507	8	0	1	507	1	507	0.0	1022

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374860	sp\|Q9LPL6\|TOL3_ARATH	58.523	528	171	13	1	506	1	502	0.0	541

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374860	A0A072V220	98.422	507	8	0	1	507	1	507	0.0	1022

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0374860	-0.804427	2.172118e-49	-8.615850e-47
Msa0008330	Msa0374860	-0.808852	2.526557e-50	-8.615850e-47
Msa0017120	Msa0374860	-0.812292	4.562053e-51	-8.615850e-47
Msa0018220	Msa0374860	-0.816972	4.196609e-52	-8.615850e-47
Msa0030730	Msa0374860	-0.808204	3.473610e-50	-8.615850e-47
Msa0059960	Msa0374860	0.828739	7.603734e-55	-8.615850e-47
Msa0075850	Msa0374860	-0.803523	3.346743e-49	-8.615850e-47
Msa0084630	Msa0374860	-0.803511	3.366895e-49	-8.615850e-47
Msa0092660	Msa0374860	-0.808102	3.653076e-50	-8.615850e-47
Msa0094420	Msa0374860	-0.832027	1.194639e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374860	MtrunA17_Chr3g0125541	98.422	507	8	0	1	507	1	507	0.0	1022
Msa0374860	MtrunA17_Chr1g0157701	50.685	365	158	6	7	355	4	362	3.94e-112	347
Msa0374860	MtrunA17_Chr3g0139891	57.519	266	107	2	10	269	7	272	3.56e-102	320
Msa0374860	MtrunA17_Chr7g0244381	49.621	264	129	1	10	269	15	278	3.87e-86	280
Msa0374860	MtrunA17_Chr3g0131021	39.721	287	142	3	5	275	2	273	8.70e-60	204
Msa0374860	MtrunA17_Chr8g0385261	40.000	265	152	4	5	264	2	264	2.73e-56	193
Msa0374860	MtrunA17_Chr5g0395341	32.090	268	172	8	3	264	46	309	3.52e-32	127
Msa0374860	MtrunA17_Chr7g0261361	28.819	288	178	9	10	278	43	322	7.67e-23	100
Msa0374860	MtrunA17_Chr4g0039841	31.469	286	167	10	3	266	73	351	4.49e-21	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374860	AT1G21380.1	58.523	528	171	13	1	506	1	502	0.0	541
Msa0374860	AT1G76970.2	53.125	512	167	12	1	506	1	445	2.82e-161	465
Msa0374860	AT1G76970.3	53.125	512	167	12	1	506	1	445	2.82e-161	465
Msa0374860	AT1G76970.6	53.125	512	167	12	1	506	1	445	2.82e-161	465
Msa0374860	AT1G76970.1	53.125	512	167	12	1	506	1	445	2.82e-161	465
Msa0374860	AT1G76970.7	50.526	475	162	12	38	506	12	419	8.81e-133	392
Msa0374860	AT1G76970.4	50.526	475	162	12	38	506	12	419	8.81e-133	392
Msa0374860	AT4G32760.3	49.133	346	164	4	7	347	4	342	8.08e-106	325
Msa0374860	AT1G76970.5	49.057	424	143	12	89	506	1	357	1.40e-105	320
Msa0374860	AT4G32760.1	49.143	350	158	5	7	347	4	342	5.06e-105	328

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Find 125 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGCTGCCTCCAGCTCCC+TGG	0.359253	3_1:-74385626	Msa0374860:CDS
AAGAGACAGCAGCTGTGTTT+TGG	0.269940	3_1:+74389854	None:intergenic
AAGATAATTAAGAAGCGCTT+GGG	0.476491	3_1:-74389888	Msa0374860:CDS
AAGTATGAACCATATACATA+TGG	0.387000	3_1:+74385170	None:intergenic
AATATGTCAGGGCGTGAAGG+AGG	0.620328	3_1:-74386450	Msa0374860:intron
AATCAAATCGCTTCTCAATT+CGG	0.328474	3_1:-74391327	Msa0374860:five_prime_UTR
AATCAACTAGATCTTTGAAA+AGG	0.414664	3_1:+74385412	None:intergenic
AATTGGTGATGAGGTAGTAG+TGG	0.585150	3_1:+74385698	None:intergenic
ACAATCGGTTGAGTTTGAGG+AGG	0.657220	3_1:+74388642	None:intergenic
ACACTAACGCATAAAAGAGA+TGG	0.527995	3_1:+74385117	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAAATCGCTTCTCAATT+CGG	-	chr3_1:74385235-74385254	Msa0374860:three_prime_UTR	30.0%
CTGTGAAAATAGAGAAAAAG+AGG	+	chr3_1:74385274-74385293	None:intergenic	30.0%
CGATCGATGATATAATAGAA+GGG	+	chr3_1:74385330-74385349	None:intergenic	30.0%
TCGATCGATGATATAATAGA+AGG	+	chr3_1:74385331-74385350	None:intergenic	30.0%
AATAGATCGAATTTGAGTGA+TGG	+	chr3_1:74385409-74385428	None:intergenic	30.0%
AGTCAACTCAATAAGAATAG+AGG	+	chr3_1:74385442-74385461	None:intergenic	30.0%
TTGAACGTAATCACATGTTT+CGG	-	chr3_1:74385768-74385787	Msa0374860:CDS	30.0%
TAGATATGTCATATCTAGCA+CGG	+	chr3_1:74385829-74385848	None:intergenic	30.0%
TGTTGAAATTCTTGAAAAGG+GGG	-	chr3_1:74386021-74386040	Msa0374860:intron	30.0%
TTATATTTGTAGGCAAGCAA+AGG	-	chr3_1:74386643-74386662	Msa0374860:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	74385075	74391509	74385075	ID=Msa0374860;Name=Msa0374860
chr3_1	mRNA	74385075	74391509	74385075	ID=Msa0374860-mRNA-1;Parent=Msa0374860;Name=Msa0374860-mRNA-1;_AED=0.18;_eAED=0.18;_QI=257\|1\|1\|1\|0.88\|0.8\|10\|284\|507
chr3_1	exon	74385075	74385974	74385075	ID=Msa0374860-mRNA-1:exon:17259;Parent=Msa0374860-mRNA-1
chr3_1	exon	74386107	74386298	74386107	ID=Msa0374860-mRNA-1:exon:17258;Parent=Msa0374860-mRNA-1
chr3_1	exon	74386377	74386462	74386377	ID=Msa0374860-mRNA-1:exon:17257;Parent=Msa0374860-mRNA-1
chr3_1	exon	74387426	74387507	74387426	ID=Msa0374860-mRNA-1:exon:17256;Parent=Msa0374860-mRNA-1
chr3_1	exon	74388573	74388718	74388573	ID=Msa0374860-mRNA-1:exon:17255;Parent=Msa0374860-mRNA-1
chr3_1	exon	74389133	74389246	74389133	ID=Msa0374860-mRNA-1:exon:17254;Parent=Msa0374860-mRNA-1
chr3_1	exon	74389364	74389462	74389364	ID=Msa0374860-mRNA-1:exon:17253;Parent=Msa0374860-mRNA-1
chr3_1	exon	74389851	74389929	74389851	ID=Msa0374860-mRNA-1:exon:17252;Parent=Msa0374860-mRNA-1
chr3_1	exon	74390871	74391013	74390871	ID=Msa0374860-mRNA-1:exon:17251;Parent=Msa0374860-mRNA-1
chr3_1	exon	74391286	74391509	74391286	ID=Msa0374860-mRNA-1:exon:17250;Parent=Msa0374860-mRNA-1
chr3_1	five_prime_UTR	74391286	74391509	74391286	ID=Msa0374860-mRNA-1:five_prime_utr;Parent=Msa0374860-mRNA-1
chr3_1	five_prime_UTR	74390981	74391013	74390981	ID=Msa0374860-mRNA-1:five_prime_utr;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74390871	74390980	74390871	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74389851	74389929	74389851	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74389364	74389462	74389364	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74389133	74389246	74389133	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74388573	74388718	74388573	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74387426	74387507	74387426	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74386377	74386462	74386377	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74386107	74386298	74386107	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	CDS	74385359	74385974	74385359	ID=Msa0374860-mRNA-1:cds;Parent=Msa0374860-mRNA-1
chr3_1	three_prime_UTR	74385075	74385358	74385075	ID=Msa0374860-mRNA-1:three_prime_utr;Parent=Msa0374860-mRNA-1

Gene Sequence

>Msa0374860

ATGGCTAATAATGCTGCTGCGTGTGCTGAGAGAGCAACCAGTGATTTGCTCATTGGTCCTGATTGGGCTATCAACATTGAATTGTGTGATATCATTAACATGGACCCTAGGCAAGCAAAGGATGCATTGAAGATAATTAAGAAGCGCTTGGGCAGTAAAAATCCCAAAACACAGCTGCTGTCTCTTTTTGTACTGGAGACCCTTACTAAAAATTGCGGTGAAAGTGTATTTCAGCAGATCATTGAGCGTGATATATTACACGAAATGGTTAAGATAGTGAAGAAGCGGCCGGACTTAAGTGTGAGGGAAAAGATACTGATTTTAATTGATGCATGGCAAGAAGCTTTTGGAGGCCCAAGCGGAGTTTTCCCCCAATACTATGCAGCATATAATGAACTAAAGGCCGCTGGAGTTGAATTTCCACCAAGAGAAGAAAATAGTGTGCCATTCTTCACACCTCCTCAAACTCAACCGATTGTTAATTCTGCTGCAGAATTTGATGATGCTGCTATTCAGGCTTCTCTTCAGTCAGATGCATCCGACCTTAGTGTACTAGAGATTAAAAATGCTCAAGGGCTGGCTGATGTTTTGACGGAAATGCTCAGTGCTTTGAATCCGAAAGACCCCGAGGGCGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAGTGCCGTTCTTACCAGAAACGTGTCATGCTTCTTGTGAACAGTACTGCGGATGAGGAGCTTTTAGGTCTGGGATTGGCACTAAATGACAGCCTTCAGCGAGTACTCCTTCAACATGACAATATTGCGAAAGGAACTGCTAATTCAGGTGCAAGAGAAGTAGAGACTCCAGTTCTGCCACTTGTACATGTAAACCATGAAGATGATGAGTCAGAAGATGATTTTGGTCAATTAGCCCATAGGTCTTCACGAGATACTCATACACAGATTCGGAAACCAGAGTCAGTGAGGATGAACTCGCGTATTCCCCCACCACCAGCATCAAAGATGCCAGTCTACTCTGGTACTAGCACGGTTGACTATCTTAGTGGTGATGCATACAAGGCAGAAGGATCCCTTGAAAACTCAGAACCAACTTCATTTGCAGCTCCTCTTCATTCTAGCCCTAATCCCACCTCATCCGCTATTCCTAGAGAGTCTTCAACCCATCCTCATGCCACTACTACCTCATCACCAATTTATAGCAGACAGCCTATATATGATGAGCCATCTCCCATGAAGACTTCAGAACCGCTGCCTCCAGCTCCCTGGGATACACAAGCTCCTGTCGTGATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAGTTTTTTGAGCAACAAGGTTCATCTCATTCAAGTAATGGATCAAGTTCGTCTACTGACAGCTTGCTGGGACAAACTCAAAATCTCTCTCTGAATTCATCCACCCCAACCAAAGAACAGAAACCAGAAGATGCCCTTTTCAAAGATCTAGTTGATTTTGCAAAATCGAAAACTTCTTCATCCTCCAAACCCAATAATAGGTCATATTGA

Protein sequence

>Msa0374860

MANNAAACAERATSDLLIGPDWAINIELCDIINMDPRQAKDALKIIKKRLGSKNPKTQLLSLFVLETLTKNCGESVFQQIIERDILHEMVKIVKKRPDLSVREKILILIDAWQEAFGGPSGVFPQYYAAYNELKAAGVEFPPREENSVPFFTPPQTQPIVNSAAEFDDAAIQASLQSDASDLSVLEIKNAQGLADVLTEMLSALNPKDPEGVKEEVIVDLVDQCRSYQKRVMLLVNSTADEELLGLGLALNDSLQRVLLQHDNIAKGTANSGAREVETPVLPLVHVNHEDDESEDDFGQLAHRSSRDTHTQIRKPESVRMNSRIPPPPASKMPVYSGTSTVDYLSGDAYKAEGSLENSEPTSFAAPLHSSPNPTSSAIPRESSTHPHATTTSSPIYSRQPIYDEPSPMKTSEPLPPAPWDTQAPVVIPPPPSKYNQRQQFFEQQGSSHSSNGSSSSTDSLLGQTQNLSLNSSTPTKEQKPEDALFKDLVDFAKSKTSSSSKPNNRSY*