Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1156360 | MCI11558.1 | 66.332 | 199 | 63 | 2 | 159 | 357 | 1 | 195 | 2.57e-83 | 261 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1156360 | A0A392PHL9 | 66.332 | 199 | 63 | 2 | 159 | 357 | 1 | 195 | 1.23e-83 | 261 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017120 | Msa1156360 | -0.800151 | 1.648605e-48 | -8.615850e-47 |
Msa0043680 | Msa1156360 | -0.815602 | 8.499654e-52 | -8.615850e-47 |
Msa0059960 | Msa1156360 | 0.811293 | 7.526068e-51 | -8.615850e-47 |
Msa0065390 | Msa1156360 | -0.805526 | 1.279152e-49 | -8.615850e-47 |
Msa0075850 | Msa1156360 | -0.800199 | 1.612045e-48 | -8.615850e-47 |
Msa0084630 | Msa1156360 | -0.804664 | 1.938298e-49 | -8.615850e-47 |
Msa0092660 | Msa1156360 | -0.824888 | 6.323561e-54 | -8.615850e-47 |
Msa0092680 | Msa1156360 | -0.814497 | 1.495220e-51 | -8.615850e-47 |
Msa0092730 | Msa1156360 | -0.822121 | 2.805347e-53 | -8.615850e-47 |
Msa0094420 | Msa1156360 | -0.809493 | 1.841656e-50 | -8.615850e-47 |
Msa0110710 | Msa1156360 | -0.805787 | 1.127618e-49 | -8.615850e-47 |
Msa0604700 | Msa1156360 | -0.808789 | 2.605437e-50 | -8.615850e-47 |
Msa0619330 | Msa1156360 | -0.809743 | 1.626842e-50 | -8.615850e-47 |
Msa0621770 | Msa1156360 | -0.812159 | 4.878563e-51 | -8.615850e-47 |
Msa0638710 | Msa1156360 | -0.802511 | 5.418489e-49 | -8.615850e-47 |
Msa0640880 | Msa1156360 | -0.823091 | 1.669565e-53 | -8.615850e-47 |
Msa0643800 | Msa1156360 | -0.801381 | 9.249459e-49 | -8.615850e-47 |
Msa0645820 | Msa1156360 | -0.800797 | 1.217865e-48 | -8.615850e-47 |
Msa0683650 | Msa1156360 | -0.835556 | 1.566470e-56 | -8.615850e-47 |
Msa0685540 | Msa1156360 | -0.800741 | 1.250141e-48 | -8.615850e-47 |
Msa0703760 | Msa1156360 | -0.814342 | 1.617714e-51 | -8.615850e-47 |
Msa0720270 | Msa1156360 | -0.807137 | 5.854959e-50 | -8.615850e-47 |
Msa0740420 | Msa1156360 | -0.812254 | 4.650609e-51 | -8.615850e-47 |
Msa0756480 | Msa1156360 | -0.806052 | 9.920914e-50 | -8.615850e-47 |
Msa0760890 | Msa1156360 | -0.800499 | 1.400604e-48 | -8.615850e-47 |
Msa0772210 | Msa1156360 | -0.801837 | 7.457792e-49 | -8.615850e-47 |
Msa0132180 | Msa1156360 | -0.800665 | 1.295433e-48 | -8.615850e-47 |
Msa0137600 | Msa1156360 | -0.822030 | 2.946438e-53 | -8.615850e-47 |
Msa0222070 | Msa1156360 | -0.807473 | 4.968835e-50 | -8.615850e-47 |
Msa0222120 | Msa1156360 | -0.807714 | 4.417248e-50 | -8.615850e-47 |
Msa0227290 | Msa1156360 | -0.800170 | 1.634401e-48 | -8.615850e-47 |
Msa0227490 | Msa1156360 | -0.814639 | 1.390826e-51 | -8.615850e-47 |
Msa0227500 | Msa1156360 | -0.808718 | 2.698901e-50 | -8.615850e-47 |
Msa0367370 | Msa1156360 | -0.805344 | 1.396653e-49 | -8.615850e-47 |
Msa0381580 | Msa1156360 | 0.803235 | 3.839805e-49 | -8.615850e-47 |
Msa0382560 | Msa1156360 | -0.802259 | 6.108122e-49 | -8.615850e-47 |
Msa0417630 | Msa1156360 | -0.810739 | 9.925512e-51 | -8.615850e-47 |
Msa0429270 | Msa1156360 | -0.806550 | 7.790778e-50 | -8.615850e-47 |
Msa0990520 | Msa1156360 | -0.801346 | 9.402251e-49 | -8.615850e-47 |
Msa1022310 | Msa1156360 | -0.803556 | 3.295550e-49 | -8.615850e-47 |
Msa1024140 | Msa1156360 | -0.822158 | 2.751125e-53 | -8.615850e-47 |
Msa1027790 | Msa1156360 | -0.808796 | 2.596984e-50 | -8.615850e-47 |
Msa1038320 | Msa1156360 | -0.807332 | 5.322229e-50 | -8.615850e-47 |
Msa1061180 | Msa1156360 | -0.804384 | 2.216869e-49 | -8.615850e-47 |
Msa1088690 | Msa1156360 | -0.818429 | 1.969020e-52 | -8.615850e-47 |
Msa1106560 | Msa1156360 | -0.824051 | 9.950130e-54 | -8.615850e-47 |
Msa0257130 | Msa1156360 | -0.811945 | 5.431673e-51 | -8.615850e-47 |
Msa0257930 | Msa1156360 | 0.818559 | 1.840059e-52 | -8.615850e-47 |
Msa0263620 | Msa1156360 | -0.810059 | 1.391089e-50 | -8.615850e-47 |
Msa0295520 | Msa1156360 | -0.821921 | 3.122718e-53 | -8.615850e-47 |
Msa0301180 | Msa1156360 | -0.800891 | 1.165262e-48 | -8.615850e-47 |
Msa0320540 | Msa1156360 | -0.819130 | 1.365086e-52 | -8.615850e-47 |
Msa0331780 | Msa1156360 | -0.818919 | 1.524767e-52 | -8.615850e-47 |
Msa0334780 | Msa1156360 | -0.800061 | 1.719799e-48 | -8.615850e-47 |
Msa0344070 | Msa1156360 | -0.801457 | 8.925657e-49 | -8.615850e-47 |
Msa0352200 | Msa1156360 | -0.806145 | 9.483637e-50 | -8.615850e-47 |
Msa1112610 | Msa1156360 | -0.808313 | 3.293585e-50 | -8.615850e-47 |
Msa1121470 | Msa1156360 | 0.839212 | 1.813990e-57 | -8.615850e-47 |
Msa1151960 | Msa1156360 | -0.802168 | 6.374942e-49 | -8.615850e-47 |
Msa1156360 | Msa1171060 | 0.801449 | 8.958386e-49 | -8.615850e-47 |
Msa1156360 | Msa1186210 | -0.808558 | 2.920420e-50 | -8.615850e-47 |
Msa1156360 | Msa1196600 | -0.803518 | 3.355978e-49 | -8.615850e-47 |
Msa1156360 | Msa1232860 | -0.812542 | 4.023691e-51 | -8.615850e-47 |
Msa1156360 | Msa1244180 | -0.816670 | 4.906044e-52 | -8.615850e-47 |
Msa1156360 | Msa1254770 | -0.810767 | 9.784493e-51 | -8.615850e-47 |
Msa1156360 | Msa1254800 | -0.807700 | 4.446472e-50 | -8.615850e-47 |
Msa1156360 | Msa1262310 | -0.809075 | 2.263779e-50 | -8.615850e-47 |
Msa1156360 | Msa1274740 | -0.818011 | 2.449220e-52 | -8.615850e-47 |
Msa1156360 | Msa1302150 | -0.816682 | 4.876590e-52 | -8.615850e-47 |
Msa1156360 | Msa1312730 | -0.820317 | 7.312184e-53 | -8.615850e-47 |
Msa1156360 | Msa1354040 | -0.828861 | 7.102938e-55 | -8.615850e-47 |
Msa1156360 | Msa1382720 | -0.807209 | 5.652663e-50 | -8.615850e-47 |
Msa1156360 | Msa1405770 | -0.813814 | 2.115758e-51 | -8.615850e-47 |
Msa1156360 | Msa1407710 | -0.828827 | 7.241700e-55 | -8.615850e-47 |
Msa1156360 | Msa1412520 | -0.801933 | 7.128074e-49 | -8.615850e-47 |
Msa1156360 | Msa1418200 | -0.817536 | 3.133436e-52 | -8.615850e-47 |
Msa1156360 | Msa1435040 | -0.814844 | 1.252568e-51 | -8.615850e-47 |
Msa1156360 | Msa1439670 | -0.830763 | 2.445579e-55 | -8.615850e-47 |
Msa0485280 | Msa1156360 | -0.804370 | 2.231742e-49 | -8.615850e-47 |
Msa0517300 | Msa1156360 | -0.821604 | 3.695605e-53 | -8.615850e-47 |
Msa0525240 | Msa1156360 | -0.802344 | 5.865687e-49 | -8.615850e-47 |
Msa0555940 | Msa1156360 | -0.800718 | 1.263906e-48 | -8.615850e-47 |
Msa0567290 | Msa1156360 | -0.826727 | 2.314706e-54 | -8.615850e-47 |
Msa0574170 | Msa1156360 | -0.804587 | 2.011044e-49 | -8.615850e-47 |
Msa0575250 | Msa1156360 | -0.827788 | 1.289321e-54 | -8.615850e-47 |
Msa0600390 | Msa1156360 | -0.819378 | 1.198714e-52 | -8.615850e-47 |
Msa0843290 | Msa1156360 | -0.803009 | 4.277762e-49 | -8.615850e-47 |
Msa0846640 | Msa1156360 | -0.807720 | 4.403238e-50 | -8.615850e-47 |
Msa0873830 | Msa1156360 | -0.800536 | 1.376458e-48 | -8.615850e-47 |
Msa0925160 | Msa1156360 | -0.806532 | 7.857099e-50 | -8.615850e-47 |
Msa0955260 | Msa1156360 | -0.802616 | 5.154425e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1156360 | MtrunA17_Chr7g0250141 | 33.065 | 248 | 127 | 10 | 127 | 350 | 88 | 320 | 5.86e-20 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 96 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTCAACCATTGTCTTTCT+TGG | 0.215242 | 7_4:+44657490 | Msa1156360:CDS |
ATTAGTCGGTGGACTTTCTA+TGG | 0.229945 | 7_4:+44657765 | Msa1156360:CDS |
CGTGGAACCTTTCGAGTATC+TGG | 0.232195 | 7_4:+44657110 | Msa1156360:CDS |
AGTGATTTCCAGTGTGGTTT+TGG | 0.260198 | 7_4:+44657232 | Msa1156360:CDS |
TTCCAGGGAATGCTGTAAAA+TGG | 0.261175 | 7_4:-44657270 | None:intergenic |
GACAATCGAATAAGCATTAC+AGG | 0.311358 | 7_4:+44657322 | Msa1156360:CDS |
TCTATGGGGTGGTATTGTTT+TGG | 0.319063 | 7_4:+44657781 | Msa1156360:CDS |
AAAGATTAGCTCAATATATA+AGG | 0.338961 | 7_4:+44656999 | Msa1156360:CDS |
GGGGAGGATGTGTTTACATT+TGG | 0.350400 | 7_4:+44656012 | Msa1156360:CDS |
TTTATTCATATCACTTCATT+TGG | 0.350430 | 7_4:-44657817 | None:intergenic |
TTGGTATTTCCTACAACATA+TGG | 0.355189 | 7_4:+44657509 | Msa1156360:CDS |
AGAAAACTGAAATACAGTTT+TGG | 0.363010 | 7_4:+44657038 | Msa1156360:CDS |
GGGATTGGAAGCCTACTTCC+AGG | 0.368435 | 7_4:-44657286 | None:intergenic |
CCACTTCACAAAGAACAAAA+TGG | 0.369100 | 7_4:+44657562 | Msa1156360:CDS |
CGTATTCTCCCTTGGAAAAC+CGG | 0.370089 | 7_4:+44656286 | Msa1156360:CDS |
TCTGTATGGTCGTCCTTGCT+TGG | 0.371823 | 7_4:+44657592 | Msa1156360:CDS |
TAATCTCAGGCTTCCTTTGA+AGG | 0.377343 | 7_4:-44656053 | None:intergenic |
CTGGTTGTTCCATATGTTGT+AGG | 0.398848 | 7_4:-44657518 | None:intergenic |
ATTCATATCACTTCATTTGG+TGG | 0.403378 | 7_4:-44657814 | None:intergenic |
TGTTTGTGCCGTTGCTGTAA+TGG | 0.403814 | 7_4:+44657636 | Msa1156360:CDS |
CGGCGGATAATCTTCATTGT+AGG | 0.415373 | 7_4:-44656100 | None:intergenic |
TGATTGAAGATGCATCAAAA+TGG | 0.426211 | 7_4:-44657713 | None:intergenic |
TCGTCCTTGCTTGGGTTGTT+CGG | 0.428602 | 7_4:+44657601 | Msa1156360:CDS |
TCTTTCATTGCCCAAGGGAT+TGG | 0.428984 | 7_4:-44657301 | None:intergenic |
CTGTATGGTCGTCCTTGCTT+GGG | 0.431533 | 7_4:+44657593 | Msa1156360:CDS |
GGACATGGATAATTGATAAC+TGG | 0.448053 | 7_4:-44657537 | None:intergenic |
GATGCTGAAATACTTGCAAC+CGG | 0.452382 | 7_4:+44655991 | Msa1156360:CDS |
GAAAACCGGTTGGACATTCA+AGG | 0.454355 | 7_4:+44656300 | Msa1156360:CDS |
GTATAGTCATGCTGAAACTC+GGG | 0.454877 | 7_4:-44657409 | None:intergenic |
GCGAGTTTGATGAGAAGAAT+GGG | 0.460849 | 7_4:+44656960 | Msa1156360:CDS |
GTTGCTGTAATGGTTCTTGT+TGG | 0.464949 | 7_4:+44657646 | Msa1156360:CDS |
TCACTAGAGTTAATTAAAGA+AGG | 0.465168 | 7_4:+44655495 | Msa1156360:five_prime_UTR |
AATTTCAAAGCAACACCTAC+AGG | 0.465289 | 7_4:-44655955 | None:intergenic |
TTAGTCGGTGGACTTTCTAT+GGG | 0.465952 | 7_4:+44657766 | Msa1156360:CDS |
GAAGTAGGCTTCCAATCCCT+TGG | 0.467360 | 7_4:+44657290 | Msa1156360:CDS |
CATGATGAAACAGCAGATGC+TGG | 0.469145 | 7_4:-44655353 | Msa1156350:CDS |
AAAGGAAGCCTGAGATTACA+AGG | 0.475383 | 7_4:+44656058 | Msa1156360:CDS |
TTGTAGGGAAAACTGTCATC+AGG | 0.481762 | 7_4:-44656084 | None:intergenic |
GCAGCTCATTGTCATCCAGC+TGG | 0.484808 | 7_4:-44657357 | None:intergenic |
CATGTGCTGATTGTAATCAT+AGG | 0.489650 | 7_4:-44657431 | None:intergenic |
AGGAAACATGTTCACCCAGC+TGG | 0.490868 | 7_4:+44657342 | Msa1156360:CDS |
TTACAGCATTCCCTGGAAGT+AGG | 0.494539 | 7_4:+44657275 | Msa1156360:CDS |
GGCGAGTTTGATGAGAAGAA+TGG | 0.497291 | 7_4:+44656959 | Msa1156360:CDS |
GAAGTGTTTGTTACATTAGT+CGG | 0.497356 | 7_4:+44657751 | Msa1156360:CDS |
TCAGGAAACCTTGTAATCTC+AGG | 0.510173 | 7_4:-44656066 | None:intergenic |
AAAATGGCCGCCTTTCTGTA+TGG | 0.511538 | 7_4:+44657578 | Msa1156360:CDS |
CGATTGTCTTTCATTGCCCA+AGG | 0.511834 | 7_4:-44657307 | None:intergenic |
CAAACTCGCCACGTAGGAAG+TGG | 0.513573 | 7_4:-44656946 | None:intergenic |
GGCGGATAATCTTCATTGTA+GGG | 0.514262 | 7_4:-44656099 | None:intergenic |
TTCTCCCTTGGAAAACCGGT+TGG | 0.519690 | 7_4:+44656290 | Msa1156360:CDS |
GGTATAGTCATGCTGAAACT+CGG | 0.523277 | 7_4:-44657410 | None:intergenic |
GCTTTCTGTATACTAGTGAA+TGG | 0.523901 | 7_4:-44657673 | None:intergenic |
ACTCACCTTGAATGTCCAAC+CGG | 0.528662 | 7_4:-44656305 | None:intergenic |
CTGTTTCACGTATCCTTCAA+AGG | 0.534026 | 7_4:+44656040 | Msa1156360:CDS |
TGGATGACAATGAGCTGCAT+TGG | 0.535155 | 7_4:+44657362 | Msa1156360:CDS |
CTTTGTGAAGTGGCGGGACA+TGG | 0.535677 | 7_4:-44657552 | None:intergenic |
AATGCTGTAAAATGGTTTCG+TGG | 0.540864 | 7_4:-44657262 | None:intergenic |
TTTGTTCTTTGTGAAGTGGC+GGG | 0.545878 | 7_4:-44657558 | None:intergenic |
AAGTAGGCTTCCAATCCCTT+GGG | 0.548575 | 7_4:+44657291 | Msa1156360:CDS |
CACTAGAGTTAATTAAAGAA+GGG | 0.561879 | 7_4:+44655496 | Msa1156360:five_prime_UTR |
CAGATACTCGAAAGGTTCCA+CGG | 0.563159 | 7_4:-44657109 | None:intergenic |
GTGGAACCTTTCGAGTATCT+GGG | 0.569477 | 7_4:+44657111 | Msa1156360:CDS |
ATGATGAAACAGCAGATGCT+GGG | 0.573116 | 7_4:-44655352 | Msa1156350:CDS |
CGTAGGAAGTGGGTTAAAAG+AGG | 0.574299 | 7_4:-44656935 | None:intergenic |
AATACGTGGCCCTAAACAGA+TGG | 0.574801 | 7_4:-44656269 | None:intergenic |
TCGGTGGACTTTCTATGGGG+TGG | 0.576456 | 7_4:+44657770 | Msa1156360:CDS |
ATGCTGTAAAATGGTTTCGT+GGG | 0.580160 | 7_4:-44657261 | None:intergenic |
CAGCTCATTGTCATCCAGCT+GGG | 0.585157 | 7_4:-44657356 | None:intergenic |
GGCACTTTCCAAAACCACAC+TGG | 0.587089 | 7_4:-44657240 | None:intergenic |
AAATGTAAACACATCCTCCC+CGG | 0.588798 | 7_4:-44656010 | None:intergenic |
TTACAATCAGCACATGCGTA+AGG | 0.596417 | 7_4:+44657438 | Msa1156360:CDS |
CTGCAGAGTGATTTCCAGTG+TGG | 0.609136 | 7_4:+44657226 | Msa1156360:intron |
AACAAGAACCATTACAGCAA+CGG | 0.610228 | 7_4:-44657644 | None:intergenic |
ATGCTGAAATACTTGCAACC+GGG | 0.610321 | 7_4:+44655992 | Msa1156360:CDS |
GGAAATACCAAGAAAGACAA+TGG | 0.611367 | 7_4:-44657497 | None:intergenic |
CAAGCTGAGACAAAGAGAAG+AGG | 0.615482 | 7_4:-44655407 | None:intergenic |
GTGTTTGTTACATTAGTCGG+TGG | 0.622983 | 7_4:+44657754 | Msa1156360:CDS |
CTACAATGAAGATTATCCGC+CGG | 0.630707 | 7_4:+44656101 | Msa1156360:CDS |
GATTGTCTTTCATTGCCCAA+GGG | 0.631392 | 7_4:-44657306 | None:intergenic |
GCAAGGACGACCATACAGAA+AGG | 0.632075 | 7_4:-44657588 | None:intergenic |
GGATTGGAAGCCTACTTCCA+GGG | 0.634042 | 7_4:-44657285 | None:intergenic |
TGCTGAAATACTTGCAACCG+GGG | 0.637362 | 7_4:+44655993 | Msa1156360:CDS |
ATCTTACCCAGATACTCGAA+AGG | 0.643412 | 7_4:-44657117 | None:intergenic |
ATTTCAAAGCAACACCTACA+GGG | 0.647287 | 7_4:-44655954 | None:intergenic |
AAAACCGAACAACCCAAGCA+AGG | 0.649732 | 7_4:-44657605 | None:intergenic |
GTCTCTGTAAAAGTTCAACA+TGG | 0.657530 | 7_4:-44655381 | None:intergenic |
CGAGTTTGATGAGAAGAATG+GGG | 0.665142 | 7_4:+44656961 | Msa1156360:CDS |
AAACTCGCCACGTAGGAAGT+GGG | 0.667000 | 7_4:-44656945 | None:intergenic |
TAGTCGGTGGACTTTCTATG+GGG | 0.669112 | 7_4:+44657767 | Msa1156360:CDS |
ACTTCAGACTTCATCCCTGT+AGG | 0.673784 | 7_4:+44655940 | Msa1156360:CDS |
TGAAATACTTGCAACCGGGG+AGG | 0.691742 | 7_4:+44655996 | Msa1156360:CDS |
AGGACGACCATACAGAAAGG+CGG | 0.698524 | 7_4:-44657585 | None:intergenic |
AAAATGTTAGGAGTCGTCCG+TGG | 0.700444 | 7_4:+44657092 | Msa1156360:CDS |
TATAGTCATGCTGAAACTCG+GGG | 0.706617 | 7_4:-44657408 | None:intergenic |
TCTCATCAAACTCGCCACGT+AGG | 0.711118 | 7_4:-44656952 | None:intergenic |
ATGACTCATTCACAATACAG+AGG | 0.731547 | 7_4:+44655530 | Msa1156360:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGAAATTAAAAAAAGAAA+TGG | - | chr7_4:44655573-44655592 | None:intergenic | 10.0% |
!! | ATAATATTCAAATAATTGAT+AGG | + | chr7_4:44656904-44656923 | Msa1156360:intron | 10.0% |
!!! | AAAAAAGAAATGGAAATTTT+TGG | - | chr7_4:44655563-44655582 | None:intergenic | 15.0% |
!! | TTTCTATAATAACACAATTT+AGG | + | chr7_4:44655586-44655605 | Msa1156360:intron | 15.0% |
!! | TTTATTTGATATATTATGTC+AGG | - | chr7_4:44655713-44655732 | None:intergenic | 15.0% |
!!! | AAAACATTGAAAACTATTTT+AGG | - | chr7_4:44656436-44656455 | None:intergenic | 15.0% |
!!! | CAATTGATTCAAAGTAAATA+TGG | - | chr7_4:44655801-44655820 | None:intergenic | 20.0% |
!! | AAAAATAGAGGACAAAAATT+AGG | - | chr7_4:44656212-44656231 | None:intergenic | 20.0% |
!!! | TTTTTTGATTACCTTGTTAT+AGG | + | chr7_4:44656228-44656247 | Msa1156360:intron | 20.0% |
!! | ATTAAGCTTAATTAGATGTA+GGG | - | chr7_4:44656405-44656424 | None:intergenic | 20.0% |
!! | ATTACTTGTACCTATATAAT+TGG | - | chr7_4:44656677-44656696 | None:intergenic | 20.0% |
!!! | TTTCCTTTTTCTTTTTAGTA+AGG | - | chr7_4:44656713-44656732 | None:intergenic | 20.0% |
!!! | AAAGATTAGCTCAATATATA+AGG | + | chr7_4:44656999-44657018 | Msa1156360:CDS | 20.0% |
! | TCACTAGAGTTAATTAAAGA+AGG | + | chr7_4:44655495-44655514 | Msa1156360:five_prime_UTR | 25.0% |
! | CACTAGAGTTAATTAAAGAA+GGG | + | chr7_4:44655496-44655515 | Msa1156360:five_prime_UTR | 25.0% |
!!! | AAGGAACAATTGTTTTTTCA+AGG | + | chr7_4:44655633-44655652 | Msa1156360:intron | 25.0% |
! | ACAACATAAACTAAAGAGAA+TGG | - | chr7_4:44655852-44655871 | None:intergenic | 25.0% |
! | TGAAACAGATTATTGATATG+AGG | - | chr7_4:44655893-44655912 | None:intergenic | 25.0% |
! | TAGAAGAAAAACAGTTAGAA+TGG | - | chr7_4:44656146-44656165 | None:intergenic | 25.0% |
! | CAAGGTAATCAAAAAAATAG+AGG | - | chr7_4:44656224-44656243 | None:intergenic | 25.0% |
! | TTAAGCTTAATTAGATGTAG+GGG | - | chr7_4:44656404-44656423 | None:intergenic | 25.0% |
! | CATTAAGCTTAATTAGATGT+AGG | - | chr7_4:44656406-44656425 | None:intergenic | 25.0% |
! | TTCATTGTACTACTATTAGT+TGG | - | chr7_4:44656646-44656665 | None:intergenic | 25.0% |
! | AAGAAAAAGGAAAACAGAAA+AGG | + | chr7_4:44656720-44656739 | Msa1156360:intron | 25.0% |
! | GTAAAAACATTATCAAGCAT+CGG | - | chr7_4:44656807-44656826 | None:intergenic | 25.0% |
!! | AGAAAACTGAAATACAGTTT+TGG | + | chr7_4:44657038-44657057 | Msa1156360:CDS | 25.0% |
! | TATCTTGCTACAAAAATGTT+AGG | + | chr7_4:44657080-44657099 | Msa1156360:CDS | 25.0% |
AAAAAAACAGAACAGAACAG+AGG | + | chr7_4:44655455-44655474 | Msa1156360:five_prime_UTR | 30.0% | |
! | CTGTTTCATCTTTTACACTT+AGG | + | chr7_4:44655905-44655924 | Msa1156360:intron | 30.0% |
! | TTCATCTTTTACACTTAGGA+TGG | + | chr7_4:44655909-44655928 | Msa1156360:intron | 30.0% |
! | TTTTACACTTAGGATGGTTT+TGG | + | chr7_4:44655915-44655934 | Msa1156360:intron | 30.0% |
ACAGAGCAAATTAAGGATAA+TGG | - | chr7_4:44656172-44656191 | None:intergenic | 30.0% | |
CAAGATAACAGAGCAAATTA+AGG | - | chr7_4:44656179-44656198 | None:intergenic | 30.0% | |
ATGTCTTCTTACCTATAACA+AGG | - | chr7_4:44656242-44656261 | None:intergenic | 30.0% | |
! | ATTTTCGATCCATCTGTTTA+GGG | + | chr7_4:44656260-44656279 | Msa1156360:CDS | 30.0% |
ACAAAACCAACAAATGGTTT+GGG | - | chr7_4:44656381-44656400 | None:intergenic | 30.0% | |
AGAAAAACAGTATATCAAGC+AGG | - | chr7_4:44656483-44656502 | None:intergenic | 30.0% | |
TGTACGAATTTGTGAAACTT+TGG | + | chr7_4:44656502-44656521 | Msa1156360:intron | 30.0% | |
TCACAATGAATCGCAATATT+TGG | - | chr7_4:44656599-44656618 | None:intergenic | 30.0% | |
ACTTGTACCTATATAATTGG+TGG | - | chr7_4:44656674-44656693 | None:intergenic | 30.0% | |
AGGCCTTACTAAAAAGAAAA+AGG | + | chr7_4:44656707-44656726 | Msa1156360:intron | 30.0% | |
!! | AACTGAAATACAGTTTTGGT+TGG | + | chr7_4:44657042-44657061 | Msa1156360:CDS | 30.0% |
TTGGTATTTCCTACAACATA+TGG | + | chr7_4:44657509-44657528 | Msa1156360:CDS | 30.0% | |
! | GAAAGCTATGCTTATCTTTT+TGG | + | chr7_4:44657690-44657709 | Msa1156360:CDS | 30.0% |
TGATTGAAGATGCATCAAAA+TGG | - | chr7_4:44657716-44657735 | None:intergenic | 30.0% | |
! | GAAGTGTTTGTTACATTAGT+CGG | + | chr7_4:44657751-44657770 | Msa1156360:CDS | 30.0% |
GTCTCTGTAAAAGTTCAACA+TGG | - | chr7_4:44655384-44655403 | None:intergenic | 35.0% | |
ATGACTCATTCACAATACAG+AGG | + | chr7_4:44655530-44655549 | Msa1156360:five_prime_UTR | 35.0% | |
CATTCACAATACAGAGGTAA+AGG | + | chr7_4:44655536-44655555 | Msa1156360:intron | 35.0% | |
ATTTCAAAGCAACACCTACA+GGG | - | chr7_4:44655957-44655976 | None:intergenic | 35.0% | |
AATTTCAAAGCAACACCTAC+AGG | - | chr7_4:44655958-44655977 | None:intergenic | 35.0% | |
! | CATTTTCGATCCATCTGTTT+AGG | + | chr7_4:44656259-44656278 | Msa1156360:CDS | 35.0% |
TATTGCGTATGGAGAAAGTT+TGG | - | chr7_4:44656344-44656363 | None:intergenic | 35.0% | |
CAAAACCAACAAATGGTTTG+GGG | - | chr7_4:44656380-44656399 | None:intergenic | 35.0% | |
GACAAAACCAACAAATGGTT+TGG | - | chr7_4:44656382-44656401 | None:intergenic | 35.0% | |
AACACGACCACCAATTATAT+AGG | + | chr7_4:44656664-44656683 | Msa1156360:intron | 35.0% | |
TACAAGTAATGAGCTAAGTG+AGG | + | chr7_4:44656687-44656706 | Msa1156360:intron | 35.0% | |
ATGCTGTAAAATGGTTTCGT+GGG | - | chr7_4:44657264-44657283 | None:intergenic | 35.0% | |
AATGCTGTAAAATGGTTTCG+TGG | - | chr7_4:44657265-44657284 | None:intergenic | 35.0% | |
GACAATCGAATAAGCATTAC+AGG | + | chr7_4:44657322-44657341 | Msa1156360:CDS | 35.0% | |
!! | CATGTGCTGATTGTAATCAT+AGG | - | chr7_4:44657434-44657453 | None:intergenic | 35.0% |
GGAAATACCAAGAAAGACAA+TGG | - | chr7_4:44657500-44657519 | None:intergenic | 35.0% | |
! | GGACATGGATAATTGATAAC+TGG | - | chr7_4:44657540-44657559 | None:intergenic | 35.0% |
! | TTTTGTTCTTTGTGAAGTGG+CGG | - | chr7_4:44657562-44657581 | None:intergenic | 35.0% |
! | CCATTTTGTTCTTTGTGAAG+TGG | - | chr7_4:44657565-44657584 | None:intergenic | 35.0% |
CCACTTCACAAAGAACAAAA+TGG | + | chr7_4:44657562-44657581 | Msa1156360:CDS | 35.0% | |
AACAAGAACCATTACAGCAA+CGG | - | chr7_4:44657647-44657666 | None:intergenic | 35.0% | |
GCTTTCTGTATACTAGTGAA+TGG | - | chr7_4:44657676-44657695 | None:intergenic | 35.0% | |
ATGATGAAACAGCAGATGCT+GGG | - | chr7_4:44655355-44655374 | Msa1156350:CDS | 40.0% | |
CCTTGAACAAGTACTCAACA+CGG | - | chr7_4:44655617-44655636 | None:intergenic | 40.0% | |
TCAAAGTAAAAGACGCGTTG+AGG | - | chr7_4:44655750-44655769 | None:intergenic | 40.0% | |
GATGCTGAAATACTTGCAAC+CGG | + | chr7_4:44655991-44656010 | Msa1156360:CDS | 40.0% | |
ATGCTGAAATACTTGCAACC+GGG | + | chr7_4:44655992-44656011 | Msa1156360:CDS | 40.0% | |
AAATGTAAACACATCCTCCC+CGG | - | chr7_4:44656013-44656032 | None:intergenic | 40.0% | |
CTGTTTCACGTATCCTTCAA+AGG | + | chr7_4:44656040-44656059 | Msa1156360:CDS | 40.0% | |
TAATCTCAGGCTTCCTTTGA+AGG | - | chr7_4:44656056-44656075 | None:intergenic | 40.0% | |
AAAGGAAGCCTGAGATTACA+AGG | + | chr7_4:44656058-44656077 | Msa1156360:CDS | 40.0% | |
TCAGGAAACCTTGTAATCTC+AGG | - | chr7_4:44656069-44656088 | None:intergenic | 40.0% | |
TTGTAGGGAAAACTGTCATC+AGG | - | chr7_4:44656087-44656106 | None:intergenic | 40.0% | |
GGCGGATAATCTTCATTGTA+GGG | - | chr7_4:44656102-44656121 | None:intergenic | 40.0% | |
CTACAATGAAGATTATCCGC+CGG | + | chr7_4:44656101-44656120 | Msa1156360:CDS | 40.0% | |
ATGTAAAGATGACAGCCTAC+CGG | - | chr7_4:44656123-44656142 | None:intergenic | 40.0% | |
CGTATGGAGAAAGTTTGGTT+GGG | - | chr7_4:44656339-44656358 | None:intergenic | 40.0% | |
TTTCTCCATACGCAATAGTC+AGG | + | chr7_4:44656347-44656366 | Msa1156360:intron | 40.0% | |
TTCTCCATACGCAATAGTCA+GGG | + | chr7_4:44656348-44656367 | Msa1156360:intron | 40.0% | |
TCAAACCCCAAACCATTTGT+TGG | + | chr7_4:44656372-44656391 | Msa1156360:intron | 40.0% | |
TAGGGGACAAAACCAACAAA+TGG | - | chr7_4:44656387-44656406 | None:intergenic | 40.0% | |
AACAGTATATCAAGCAGGAG+TGG | - | chr7_4:44656478-44656497 | None:intergenic | 40.0% | |
TAAAACTGCATAGCAGCAGT+GGG | - | chr7_4:44656762-44656781 | None:intergenic | 40.0% | |
TTAAAACTGCATAGCAGCAG+TGG | - | chr7_4:44656763-44656782 | None:intergenic | 40.0% | |
GCGAGTTTGATGAGAAGAAT+GGG | + | chr7_4:44656960-44656979 | Msa1156360:CDS | 40.0% | |
CGAGTTTGATGAGAAGAATG+GGG | + | chr7_4:44656961-44656980 | Msa1156360:CDS | 40.0% | |
ATCTTACCCAGATACTCGAA+AGG | - | chr7_4:44657120-44657139 | None:intergenic | 40.0% | |
! | AGTGATTTCCAGTGTGGTTT+TGG | + | chr7_4:44657232-44657251 | Msa1156360:CDS | 40.0% |
! | AACCATTTTACAGCATTCCC+TGG | + | chr7_4:44657268-44657287 | Msa1156360:CDS | 40.0% |
TTCCAGGGAATGCTGTAAAA+TGG | - | chr7_4:44657273-44657292 | None:intergenic | 40.0% | |
GATTGTCTTTCATTGCCCAA+GGG | - | chr7_4:44657309-44657328 | None:intergenic | 40.0% | |
TATAGTCATGCTGAAACTCG+GGG | - | chr7_4:44657411-44657430 | None:intergenic | 40.0% | |
GTATAGTCATGCTGAAACTC+GGG | - | chr7_4:44657412-44657431 | None:intergenic | 40.0% | |
GGTATAGTCATGCTGAAACT+CGG | - | chr7_4:44657413-44657432 | None:intergenic | 40.0% | |
TTACAATCAGCACATGCGTA+AGG | + | chr7_4:44657438-44657457 | Msa1156360:CDS | 40.0% | |
GTCTCAACCATTGTCTTTCT+TGG | + | chr7_4:44657490-44657509 | Msa1156360:CDS | 40.0% | |
CTGGTTGTTCCATATGTTGT+AGG | - | chr7_4:44657521-44657540 | None:intergenic | 40.0% | |
TTTGTTCTTTGTGAAGTGGC+GGG | - | chr7_4:44657561-44657580 | None:intergenic | 40.0% | |
GTTGCTGTAATGGTTCTTGT+TGG | + | chr7_4:44657646-44657665 | Msa1156360:CDS | 40.0% | |
! | GTGTTTGTTACATTAGTCGG+TGG | + | chr7_4:44657754-44657773 | Msa1156360:CDS | 40.0% |
! | ATTAGTCGGTGGACTTTCTA+TGG | + | chr7_4:44657765-44657784 | Msa1156360:CDS | 40.0% |
! | TTAGTCGGTGGACTTTCTAT+GGG | + | chr7_4:44657766-44657785 | Msa1156360:CDS | 40.0% |
! | TCTATGGGGTGGTATTGTTT+TGG | + | chr7_4:44657781-44657800 | Msa1156360:CDS | 40.0% |
CATGATGAAACAGCAGATGC+TGG | - | chr7_4:44655356-44655375 | Msa1156350:CDS | 45.0% | |
CAAGCTGAGACAAAGAGAAG+AGG | - | chr7_4:44655410-44655429 | None:intergenic | 45.0% | |
CCGTGTTGAGTACTTGTTCA+AGG | + | chr7_4:44655614-44655633 | Msa1156360:intron | 45.0% | |
ACTTCAGACTTCATCCCTGT+AGG | + | chr7_4:44655940-44655959 | Msa1156360:CDS | 45.0% | |
TGCTGAAATACTTGCAACCG+GGG | + | chr7_4:44655993-44656012 | Msa1156360:CDS | 45.0% | |
GGGGAGGATGTGTTTACATT+TGG | + | chr7_4:44656012-44656031 | Msa1156360:CDS | 45.0% | |
CGGCGGATAATCTTCATTGT+AGG | - | chr7_4:44656103-44656122 | None:intergenic | 45.0% | |
AATGAAGATTATCCGCCGGT+AGG | + | chr7_4:44656105-44656124 | Msa1156360:intron | 45.0% | |
AATACGTGGCCCTAAACAGA+TGG | - | chr7_4:44656272-44656291 | None:intergenic | 45.0% | |
! | GTTTTCCAAGGGAGAATACG+TGG | - | chr7_4:44656286-44656305 | None:intergenic | 45.0% |
CGTATTCTCCCTTGGAAAAC+CGG | + | chr7_4:44656286-44656305 | Msa1156360:CDS | 45.0% | |
!! | ATGTCCAACCGGTTTTCCAA+GGG | - | chr7_4:44656297-44656316 | None:intergenic | 45.0% |
!! | AATGTCCAACCGGTTTTCCA+AGG | - | chr7_4:44656298-44656317 | None:intergenic | 45.0% |
GAAAACCGGTTGGACATTCA+AGG | + | chr7_4:44656300-44656319 | Msa1156360:CDS | 45.0% | |
ACTCACCTTGAATGTCCAAC+CGG | - | chr7_4:44656308-44656327 | None:intergenic | 45.0% | |
GCGTATGGAGAAAGTTTGGT+TGG | - | chr7_4:44656340-44656359 | None:intergenic | 45.0% | |
TGATCCCTGACTATTGCGTA+TGG | - | chr7_4:44656355-44656374 | None:intergenic | 45.0% | |
AAAACTGCATAGCAGCAGTG+GGG | - | chr7_4:44656761-44656780 | None:intergenic | 45.0% | |
! | GGAGTGTTAGAAGGTAAGTG+AGG | - | chr7_4:44656786-44656805 | None:intergenic | 45.0% |
!! | TCAAGCATCGGAGTGTTAGA+AGG | - | chr7_4:44656795-44656814 | None:intergenic | 45.0% |
!! | CGTAGGAAGTGGGTTAAAAG+AGG | - | chr7_4:44656938-44656957 | None:intergenic | 45.0% |
! | CTTTTAACCCACTTCCTACG+TGG | + | chr7_4:44656938-44656957 | Msa1156360:CDS | 45.0% |
GGCGAGTTTGATGAGAAGAA+TGG | + | chr7_4:44656959-44656978 | Msa1156360:CDS | 45.0% | |
AAAATGTTAGGAGTCGTCCG+TGG | + | chr7_4:44657092-44657111 | Msa1156360:CDS | 45.0% | |
CAGATACTCGAAAGGTTCCA+CGG | - | chr7_4:44657112-44657131 | None:intergenic | 45.0% | |
! | GTGGAACCTTTCGAGTATCT+GGG | + | chr7_4:44657111-44657130 | Msa1156360:CDS | 45.0% |
TTACAGCATTCCCTGGAAGT+AGG | + | chr7_4:44657275-44657294 | Msa1156360:CDS | 45.0% | |
AAGTAGGCTTCCAATCCCTT+GGG | + | chr7_4:44657291-44657310 | Msa1156360:CDS | 45.0% | |
TCTTTCATTGCCCAAGGGAT+TGG | - | chr7_4:44657304-44657323 | None:intergenic | 45.0% | |
CGATTGTCTTTCATTGCCCA+AGG | - | chr7_4:44657310-44657329 | None:intergenic | 45.0% | |
TGGATGACAATGAGCTGCAT+TGG | + | chr7_4:44657362-44657381 | Msa1156360:CDS | 45.0% | |
AAAATGGCCGCCTTTCTGTA+TGG | + | chr7_4:44657578-44657597 | Msa1156360:CDS | 45.0% | |
AAAACCGAACAACCCAAGCA+AGG | - | chr7_4:44657608-44657627 | None:intergenic | 45.0% | |
! | TGTTTGTGCCGTTGCTGTAA+TGG | + | chr7_4:44657636-44657655 | Msa1156360:CDS | 45.0% |
! | TAGTCGGTGGACTTTCTATG+GGG | + | chr7_4:44657767-44657786 | Msa1156360:CDS | 45.0% |
TGAAATACTTGCAACCGGGG+AGG | + | chr7_4:44655996-44656015 | Msa1156360:CDS | 50.0% | |
TAAAGATGACAGCCTACCGG+CGG | - | chr7_4:44656120-44656139 | None:intergenic | 50.0% | |
TTCTCCCTTGGAAAACCGGT+TGG | + | chr7_4:44656290-44656309 | Msa1156360:CDS | 50.0% | |
AAACTGCATAGCAGCAGTGG+GGG | - | chr7_4:44656760-44656779 | None:intergenic | 50.0% | |
AAACTCGCCACGTAGGAAGT+GGG | - | chr7_4:44656948-44656967 | None:intergenic | 50.0% | |
TCTCATCAAACTCGCCACGT+AGG | - | chr7_4:44656955-44656974 | None:intergenic | 50.0% | |
! | CGTGGAACCTTTCGAGTATC+TGG | + | chr7_4:44657110-44657129 | Msa1156360:CDS | 50.0% |
CTGCAGAGTGATTTCCAGTG+TGG | + | chr7_4:44657226-44657245 | Msa1156360:intron | 50.0% | |
GGCACTTTCCAAAACCACAC+TGG | - | chr7_4:44657243-44657262 | None:intergenic | 50.0% | |
GGATTGGAAGCCTACTTCCA+GGG | - | chr7_4:44657288-44657307 | None:intergenic | 50.0% | |
GAAGTAGGCTTCCAATCCCT+TGG | + | chr7_4:44657290-44657309 | Msa1156360:CDS | 50.0% | |
AGGAAACATGTTCACCCAGC+TGG | + | chr7_4:44657342-44657361 | Msa1156360:CDS | 50.0% | |
CAGCTCATTGTCATCCAGCT+GGG | - | chr7_4:44657359-44657378 | None:intergenic | 50.0% | |
AGGACGACCATACAGAAAGG+CGG | - | chr7_4:44657588-44657607 | None:intergenic | 50.0% | |
GCAAGGACGACCATACAGAA+AGG | - | chr7_4:44657591-44657610 | None:intergenic | 50.0% | |
TCTGTATGGTCGTCCTTGCT+TGG | + | chr7_4:44657592-44657611 | Msa1156360:CDS | 50.0% | |
CTGTATGGTCGTCCTTGCTT+GGG | + | chr7_4:44657593-44657612 | Msa1156360:CDS | 50.0% | |
! | TCGTCCTTGCTTGGGTTGTT+CGG | + | chr7_4:44657601-44657620 | Msa1156360:CDS | 50.0% |
TAGGGCCACGTATTCTCCCT+TGG | + | chr7_4:44656278-44656297 | Msa1156360:CDS | 55.0% | |
AACTGCATAGCAGCAGTGGG+GGG | - | chr7_4:44656759-44656778 | None:intergenic | 55.0% | |
CAAACTCGCCACGTAGGAAG+TGG | - | chr7_4:44656949-44656968 | None:intergenic | 55.0% | |
GGGATTGGAAGCCTACTTCC+AGG | - | chr7_4:44657289-44657308 | None:intergenic | 55.0% | |
GCAGCTCATTGTCATCCAGC+TGG | - | chr7_4:44657360-44657379 | None:intergenic | 55.0% | |
! | CTTTGTGAAGTGGCGGGACA+TGG | - | chr7_4:44657555-44657574 | None:intergenic | 55.0% |
! | TCGGTGGACTTTCTATGGGG+TGG | + | chr7_4:44657770-44657789 | Msa1156360:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 44655351 | 44657834 | 44655351 | ID=Msa1156360;Name=Msa1156360 |
chr7_4 | mRNA | 44655351 | 44657834 | 44655351 | ID=Msa1156360-mRNA-1;Parent=Msa1156360;Name=Msa1156360-mRNA-1;_AED=0.20;_eAED=0.20;_QI=202|1|0.8|1|0.75|0.8|5|0|358 |
chr7_4 | exon | 44655351 | 44655551 | 44655351 | ID=Msa1156360-mRNA-1:exon:11496;Parent=Msa1156360-mRNA-1 |
chr7_4 | exon | 44655927 | 44656122 | 44655927 | ID=Msa1156360-mRNA-1:exon:11497;Parent=Msa1156360-mRNA-1 |
chr7_4 | exon | 44656250 | 44656321 | 44656250 | ID=Msa1156360-mRNA-1:exon:11498;Parent=Msa1156360-mRNA-1 |
chr7_4 | exon | 44656926 | 44657132 | 44656926 | ID=Msa1156360-mRNA-1:exon:11499;Parent=Msa1156360-mRNA-1 |
chr7_4 | exon | 44657232 | 44657834 | 44657232 | ID=Msa1156360-mRNA-1:exon:11500;Parent=Msa1156360-mRNA-1 |
chr7_4 | five_prime_UTR | 44655351 | 44655551 | 44655351 | ID=Msa1156360-mRNA-1:five_prime_utr;Parent=Msa1156360-mRNA-1 |
chr7_4 | five_prime_UTR | 44655927 | 44655927 | 44655927 | ID=Msa1156360-mRNA-1:five_prime_utr;Parent=Msa1156360-mRNA-1 |
chr7_4 | CDS | 44655928 | 44656122 | 44655928 | ID=Msa1156360-mRNA-1:cds;Parent=Msa1156360-mRNA-1 |
chr7_4 | CDS | 44656250 | 44656321 | 44656250 | ID=Msa1156360-mRNA-1:cds;Parent=Msa1156360-mRNA-1 |
chr7_4 | CDS | 44656926 | 44657132 | 44656926 | ID=Msa1156360-mRNA-1:cds;Parent=Msa1156360-mRNA-1 |
chr7_4 | CDS | 44657232 | 44657834 | 44657232 | ID=Msa1156360-mRNA-1:cds;Parent=Msa1156360-mRNA-1 |
Gene Sequence |
Protein sequence |