AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156360 MtrunA17_Chr7g0250141 33.065 248 127 10 127 350 88 320 5.86e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 96 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCAACCATTGTCTTTCT+TGG 0.215242 7_4:+44657490 Msa1156360:CDS
ATTAGTCGGTGGACTTTCTA+TGG 0.229945 7_4:+44657765 Msa1156360:CDS
CGTGGAACCTTTCGAGTATC+TGG 0.232195 7_4:+44657110 Msa1156360:CDS
AGTGATTTCCAGTGTGGTTT+TGG 0.260198 7_4:+44657232 Msa1156360:CDS
TTCCAGGGAATGCTGTAAAA+TGG 0.261175 7_4:-44657270 None:intergenic
GACAATCGAATAAGCATTAC+AGG 0.311358 7_4:+44657322 Msa1156360:CDS
TCTATGGGGTGGTATTGTTT+TGG 0.319063 7_4:+44657781 Msa1156360:CDS
AAAGATTAGCTCAATATATA+AGG 0.338961 7_4:+44656999 Msa1156360:CDS
GGGGAGGATGTGTTTACATT+TGG 0.350400 7_4:+44656012 Msa1156360:CDS
TTTATTCATATCACTTCATT+TGG 0.350430 7_4:-44657817 None:intergenic
TTGGTATTTCCTACAACATA+TGG 0.355189 7_4:+44657509 Msa1156360:CDS
AGAAAACTGAAATACAGTTT+TGG 0.363010 7_4:+44657038 Msa1156360:CDS
GGGATTGGAAGCCTACTTCC+AGG 0.368435 7_4:-44657286 None:intergenic
CCACTTCACAAAGAACAAAA+TGG 0.369100 7_4:+44657562 Msa1156360:CDS
CGTATTCTCCCTTGGAAAAC+CGG 0.370089 7_4:+44656286 Msa1156360:CDS
TCTGTATGGTCGTCCTTGCT+TGG 0.371823 7_4:+44657592 Msa1156360:CDS
TAATCTCAGGCTTCCTTTGA+AGG 0.377343 7_4:-44656053 None:intergenic
CTGGTTGTTCCATATGTTGT+AGG 0.398848 7_4:-44657518 None:intergenic
ATTCATATCACTTCATTTGG+TGG 0.403378 7_4:-44657814 None:intergenic
TGTTTGTGCCGTTGCTGTAA+TGG 0.403814 7_4:+44657636 Msa1156360:CDS
CGGCGGATAATCTTCATTGT+AGG 0.415373 7_4:-44656100 None:intergenic
TGATTGAAGATGCATCAAAA+TGG 0.426211 7_4:-44657713 None:intergenic
TCGTCCTTGCTTGGGTTGTT+CGG 0.428602 7_4:+44657601 Msa1156360:CDS
TCTTTCATTGCCCAAGGGAT+TGG 0.428984 7_4:-44657301 None:intergenic
CTGTATGGTCGTCCTTGCTT+GGG 0.431533 7_4:+44657593 Msa1156360:CDS
GGACATGGATAATTGATAAC+TGG 0.448053 7_4:-44657537 None:intergenic
GATGCTGAAATACTTGCAAC+CGG 0.452382 7_4:+44655991 Msa1156360:CDS
GAAAACCGGTTGGACATTCA+AGG 0.454355 7_4:+44656300 Msa1156360:CDS
GTATAGTCATGCTGAAACTC+GGG 0.454877 7_4:-44657409 None:intergenic
GCGAGTTTGATGAGAAGAAT+GGG 0.460849 7_4:+44656960 Msa1156360:CDS
GTTGCTGTAATGGTTCTTGT+TGG 0.464949 7_4:+44657646 Msa1156360:CDS
TCACTAGAGTTAATTAAAGA+AGG 0.465168 7_4:+44655495 Msa1156360:five_prime_UTR
AATTTCAAAGCAACACCTAC+AGG 0.465289 7_4:-44655955 None:intergenic
TTAGTCGGTGGACTTTCTAT+GGG 0.465952 7_4:+44657766 Msa1156360:CDS
GAAGTAGGCTTCCAATCCCT+TGG 0.467360 7_4:+44657290 Msa1156360:CDS
CATGATGAAACAGCAGATGC+TGG 0.469145 7_4:-44655353 Msa1156350:CDS
AAAGGAAGCCTGAGATTACA+AGG 0.475383 7_4:+44656058 Msa1156360:CDS
TTGTAGGGAAAACTGTCATC+AGG 0.481762 7_4:-44656084 None:intergenic
GCAGCTCATTGTCATCCAGC+TGG 0.484808 7_4:-44657357 None:intergenic
CATGTGCTGATTGTAATCAT+AGG 0.489650 7_4:-44657431 None:intergenic
AGGAAACATGTTCACCCAGC+TGG 0.490868 7_4:+44657342 Msa1156360:CDS
TTACAGCATTCCCTGGAAGT+AGG 0.494539 7_4:+44657275 Msa1156360:CDS
GGCGAGTTTGATGAGAAGAA+TGG 0.497291 7_4:+44656959 Msa1156360:CDS
GAAGTGTTTGTTACATTAGT+CGG 0.497356 7_4:+44657751 Msa1156360:CDS
TCAGGAAACCTTGTAATCTC+AGG 0.510173 7_4:-44656066 None:intergenic
AAAATGGCCGCCTTTCTGTA+TGG 0.511538 7_4:+44657578 Msa1156360:CDS
CGATTGTCTTTCATTGCCCA+AGG 0.511834 7_4:-44657307 None:intergenic
CAAACTCGCCACGTAGGAAG+TGG 0.513573 7_4:-44656946 None:intergenic
GGCGGATAATCTTCATTGTA+GGG 0.514262 7_4:-44656099 None:intergenic
TTCTCCCTTGGAAAACCGGT+TGG 0.519690 7_4:+44656290 Msa1156360:CDS
GGTATAGTCATGCTGAAACT+CGG 0.523277 7_4:-44657410 None:intergenic
GCTTTCTGTATACTAGTGAA+TGG 0.523901 7_4:-44657673 None:intergenic
ACTCACCTTGAATGTCCAAC+CGG 0.528662 7_4:-44656305 None:intergenic
CTGTTTCACGTATCCTTCAA+AGG 0.534026 7_4:+44656040 Msa1156360:CDS
TGGATGACAATGAGCTGCAT+TGG 0.535155 7_4:+44657362 Msa1156360:CDS
CTTTGTGAAGTGGCGGGACA+TGG 0.535677 7_4:-44657552 None:intergenic
AATGCTGTAAAATGGTTTCG+TGG 0.540864 7_4:-44657262 None:intergenic
TTTGTTCTTTGTGAAGTGGC+GGG 0.545878 7_4:-44657558 None:intergenic
AAGTAGGCTTCCAATCCCTT+GGG 0.548575 7_4:+44657291 Msa1156360:CDS
CACTAGAGTTAATTAAAGAA+GGG 0.561879 7_4:+44655496 Msa1156360:five_prime_UTR
CAGATACTCGAAAGGTTCCA+CGG 0.563159 7_4:-44657109 None:intergenic
GTGGAACCTTTCGAGTATCT+GGG 0.569477 7_4:+44657111 Msa1156360:CDS
ATGATGAAACAGCAGATGCT+GGG 0.573116 7_4:-44655352 Msa1156350:CDS
CGTAGGAAGTGGGTTAAAAG+AGG 0.574299 7_4:-44656935 None:intergenic
AATACGTGGCCCTAAACAGA+TGG 0.574801 7_4:-44656269 None:intergenic
TCGGTGGACTTTCTATGGGG+TGG 0.576456 7_4:+44657770 Msa1156360:CDS
ATGCTGTAAAATGGTTTCGT+GGG 0.580160 7_4:-44657261 None:intergenic
CAGCTCATTGTCATCCAGCT+GGG 0.585157 7_4:-44657356 None:intergenic
GGCACTTTCCAAAACCACAC+TGG 0.587089 7_4:-44657240 None:intergenic
AAATGTAAACACATCCTCCC+CGG 0.588798 7_4:-44656010 None:intergenic
TTACAATCAGCACATGCGTA+AGG 0.596417 7_4:+44657438 Msa1156360:CDS
CTGCAGAGTGATTTCCAGTG+TGG 0.609136 7_4:+44657226 Msa1156360:intron
AACAAGAACCATTACAGCAA+CGG 0.610228 7_4:-44657644 None:intergenic
ATGCTGAAATACTTGCAACC+GGG 0.610321 7_4:+44655992 Msa1156360:CDS
GGAAATACCAAGAAAGACAA+TGG 0.611367 7_4:-44657497 None:intergenic
CAAGCTGAGACAAAGAGAAG+AGG 0.615482 7_4:-44655407 None:intergenic
GTGTTTGTTACATTAGTCGG+TGG 0.622983 7_4:+44657754 Msa1156360:CDS
CTACAATGAAGATTATCCGC+CGG 0.630707 7_4:+44656101 Msa1156360:CDS
GATTGTCTTTCATTGCCCAA+GGG 0.631392 7_4:-44657306 None:intergenic
GCAAGGACGACCATACAGAA+AGG 0.632075 7_4:-44657588 None:intergenic
GGATTGGAAGCCTACTTCCA+GGG 0.634042 7_4:-44657285 None:intergenic
TGCTGAAATACTTGCAACCG+GGG 0.637362 7_4:+44655993 Msa1156360:CDS
ATCTTACCCAGATACTCGAA+AGG 0.643412 7_4:-44657117 None:intergenic
ATTTCAAAGCAACACCTACA+GGG 0.647287 7_4:-44655954 None:intergenic
AAAACCGAACAACCCAAGCA+AGG 0.649732 7_4:-44657605 None:intergenic
GTCTCTGTAAAAGTTCAACA+TGG 0.657530 7_4:-44655381 None:intergenic
CGAGTTTGATGAGAAGAATG+GGG 0.665142 7_4:+44656961 Msa1156360:CDS
AAACTCGCCACGTAGGAAGT+GGG 0.667000 7_4:-44656945 None:intergenic
TAGTCGGTGGACTTTCTATG+GGG 0.669112 7_4:+44657767 Msa1156360:CDS
ACTTCAGACTTCATCCCTGT+AGG 0.673784 7_4:+44655940 Msa1156360:CDS
TGAAATACTTGCAACCGGGG+AGG 0.691742 7_4:+44655996 Msa1156360:CDS
AGGACGACCATACAGAAAGG+CGG 0.698524 7_4:-44657585 None:intergenic
AAAATGTTAGGAGTCGTCCG+TGG 0.700444 7_4:+44657092 Msa1156360:CDS
TATAGTCATGCTGAAACTCG+GGG 0.706617 7_4:-44657408 None:intergenic
TCTCATCAAACTCGCCACGT+AGG 0.711118 7_4:-44656952 None:intergenic
ATGACTCATTCACAATACAG+AGG 0.731547 7_4:+44655530 Msa1156360:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATTAAAAAAAGAAA+TGG - chr7_4:44655573-44655592 None:intergenic 10.0%
!! ATAATATTCAAATAATTGAT+AGG + chr7_4:44656904-44656923 Msa1156360:intron 10.0%
!!! AAAAAAGAAATGGAAATTTT+TGG - chr7_4:44655563-44655582 None:intergenic 15.0%
!! TTTCTATAATAACACAATTT+AGG + chr7_4:44655586-44655605 Msa1156360:intron 15.0%
!! TTTATTTGATATATTATGTC+AGG - chr7_4:44655713-44655732 None:intergenic 15.0%
!!! AAAACATTGAAAACTATTTT+AGG - chr7_4:44656436-44656455 None:intergenic 15.0%
!!! CAATTGATTCAAAGTAAATA+TGG - chr7_4:44655801-44655820 None:intergenic 20.0%
!! AAAAATAGAGGACAAAAATT+AGG - chr7_4:44656212-44656231 None:intergenic 20.0%
!!! TTTTTTGATTACCTTGTTAT+AGG + chr7_4:44656228-44656247 Msa1156360:intron 20.0%
!! ATTAAGCTTAATTAGATGTA+GGG - chr7_4:44656405-44656424 None:intergenic 20.0%
!! ATTACTTGTACCTATATAAT+TGG - chr7_4:44656677-44656696 None:intergenic 20.0%
!!! TTTCCTTTTTCTTTTTAGTA+AGG - chr7_4:44656713-44656732 None:intergenic 20.0%
!!! AAAGATTAGCTCAATATATA+AGG + chr7_4:44656999-44657018 Msa1156360:CDS 20.0%
! TCACTAGAGTTAATTAAAGA+AGG + chr7_4:44655495-44655514 Msa1156360:five_prime_UTR 25.0%
! CACTAGAGTTAATTAAAGAA+GGG + chr7_4:44655496-44655515 Msa1156360:five_prime_UTR 25.0%
!!! AAGGAACAATTGTTTTTTCA+AGG + chr7_4:44655633-44655652 Msa1156360:intron 25.0%
! ACAACATAAACTAAAGAGAA+TGG - chr7_4:44655852-44655871 None:intergenic 25.0%
! TGAAACAGATTATTGATATG+AGG - chr7_4:44655893-44655912 None:intergenic 25.0%
! TAGAAGAAAAACAGTTAGAA+TGG - chr7_4:44656146-44656165 None:intergenic 25.0%
! CAAGGTAATCAAAAAAATAG+AGG - chr7_4:44656224-44656243 None:intergenic 25.0%
! TTAAGCTTAATTAGATGTAG+GGG - chr7_4:44656404-44656423 None:intergenic 25.0%
! CATTAAGCTTAATTAGATGT+AGG - chr7_4:44656406-44656425 None:intergenic 25.0%
! TTCATTGTACTACTATTAGT+TGG - chr7_4:44656646-44656665 None:intergenic 25.0%
! AAGAAAAAGGAAAACAGAAA+AGG + chr7_4:44656720-44656739 Msa1156360:intron 25.0%
! GTAAAAACATTATCAAGCAT+CGG - chr7_4:44656807-44656826 None:intergenic 25.0%
!! AGAAAACTGAAATACAGTTT+TGG + chr7_4:44657038-44657057 Msa1156360:CDS 25.0%
! TATCTTGCTACAAAAATGTT+AGG + chr7_4:44657080-44657099 Msa1156360:CDS 25.0%
AAAAAAACAGAACAGAACAG+AGG + chr7_4:44655455-44655474 Msa1156360:five_prime_UTR 30.0%
! CTGTTTCATCTTTTACACTT+AGG + chr7_4:44655905-44655924 Msa1156360:intron 30.0%
! TTCATCTTTTACACTTAGGA+TGG + chr7_4:44655909-44655928 Msa1156360:intron 30.0%
! TTTTACACTTAGGATGGTTT+TGG + chr7_4:44655915-44655934 Msa1156360:intron 30.0%
ACAGAGCAAATTAAGGATAA+TGG - chr7_4:44656172-44656191 None:intergenic 30.0%
CAAGATAACAGAGCAAATTA+AGG - chr7_4:44656179-44656198 None:intergenic 30.0%
ATGTCTTCTTACCTATAACA+AGG - chr7_4:44656242-44656261 None:intergenic 30.0%
! ATTTTCGATCCATCTGTTTA+GGG + chr7_4:44656260-44656279 Msa1156360:CDS 30.0%
ACAAAACCAACAAATGGTTT+GGG - chr7_4:44656381-44656400 None:intergenic 30.0%
AGAAAAACAGTATATCAAGC+AGG - chr7_4:44656483-44656502 None:intergenic 30.0%
TGTACGAATTTGTGAAACTT+TGG + chr7_4:44656502-44656521 Msa1156360:intron 30.0%
TCACAATGAATCGCAATATT+TGG - chr7_4:44656599-44656618 None:intergenic 30.0%
ACTTGTACCTATATAATTGG+TGG - chr7_4:44656674-44656693 None:intergenic 30.0%
AGGCCTTACTAAAAAGAAAA+AGG + chr7_4:44656707-44656726 Msa1156360:intron 30.0%
!! AACTGAAATACAGTTTTGGT+TGG + chr7_4:44657042-44657061 Msa1156360:CDS 30.0%
TTGGTATTTCCTACAACATA+TGG + chr7_4:44657509-44657528 Msa1156360:CDS 30.0%
! GAAAGCTATGCTTATCTTTT+TGG + chr7_4:44657690-44657709 Msa1156360:CDS 30.0%
TGATTGAAGATGCATCAAAA+TGG - chr7_4:44657716-44657735 None:intergenic 30.0%
! GAAGTGTTTGTTACATTAGT+CGG + chr7_4:44657751-44657770 Msa1156360:CDS 30.0%
GTCTCTGTAAAAGTTCAACA+TGG - chr7_4:44655384-44655403 None:intergenic 35.0%
ATGACTCATTCACAATACAG+AGG + chr7_4:44655530-44655549 Msa1156360:five_prime_UTR 35.0%
CATTCACAATACAGAGGTAA+AGG + chr7_4:44655536-44655555 Msa1156360:intron 35.0%
ATTTCAAAGCAACACCTACA+GGG - chr7_4:44655957-44655976 None:intergenic 35.0%
AATTTCAAAGCAACACCTAC+AGG - chr7_4:44655958-44655977 None:intergenic 35.0%
! CATTTTCGATCCATCTGTTT+AGG + chr7_4:44656259-44656278 Msa1156360:CDS 35.0%
TATTGCGTATGGAGAAAGTT+TGG - chr7_4:44656344-44656363 None:intergenic 35.0%
CAAAACCAACAAATGGTTTG+GGG - chr7_4:44656380-44656399 None:intergenic 35.0%
GACAAAACCAACAAATGGTT+TGG - chr7_4:44656382-44656401 None:intergenic 35.0%
AACACGACCACCAATTATAT+AGG + chr7_4:44656664-44656683 Msa1156360:intron 35.0%
TACAAGTAATGAGCTAAGTG+AGG + chr7_4:44656687-44656706 Msa1156360:intron 35.0%
ATGCTGTAAAATGGTTTCGT+GGG - chr7_4:44657264-44657283 None:intergenic 35.0%
AATGCTGTAAAATGGTTTCG+TGG - chr7_4:44657265-44657284 None:intergenic 35.0%
GACAATCGAATAAGCATTAC+AGG + chr7_4:44657322-44657341 Msa1156360:CDS 35.0%
!! CATGTGCTGATTGTAATCAT+AGG - chr7_4:44657434-44657453 None:intergenic 35.0%
GGAAATACCAAGAAAGACAA+TGG - chr7_4:44657500-44657519 None:intergenic 35.0%
! GGACATGGATAATTGATAAC+TGG - chr7_4:44657540-44657559 None:intergenic 35.0%
! TTTTGTTCTTTGTGAAGTGG+CGG - chr7_4:44657562-44657581 None:intergenic 35.0%
! CCATTTTGTTCTTTGTGAAG+TGG - chr7_4:44657565-44657584 None:intergenic 35.0%
CCACTTCACAAAGAACAAAA+TGG + chr7_4:44657562-44657581 Msa1156360:CDS 35.0%
AACAAGAACCATTACAGCAA+CGG - chr7_4:44657647-44657666 None:intergenic 35.0%
GCTTTCTGTATACTAGTGAA+TGG - chr7_4:44657676-44657695 None:intergenic 35.0%
ATGATGAAACAGCAGATGCT+GGG - chr7_4:44655355-44655374 Msa1156350:CDS 40.0%
CCTTGAACAAGTACTCAACA+CGG - chr7_4:44655617-44655636 None:intergenic 40.0%
TCAAAGTAAAAGACGCGTTG+AGG - chr7_4:44655750-44655769 None:intergenic 40.0%
GATGCTGAAATACTTGCAAC+CGG + chr7_4:44655991-44656010 Msa1156360:CDS 40.0%
ATGCTGAAATACTTGCAACC+GGG + chr7_4:44655992-44656011 Msa1156360:CDS 40.0%
AAATGTAAACACATCCTCCC+CGG - chr7_4:44656013-44656032 None:intergenic 40.0%
CTGTTTCACGTATCCTTCAA+AGG + chr7_4:44656040-44656059 Msa1156360:CDS 40.0%
TAATCTCAGGCTTCCTTTGA+AGG - chr7_4:44656056-44656075 None:intergenic 40.0%
AAAGGAAGCCTGAGATTACA+AGG + chr7_4:44656058-44656077 Msa1156360:CDS 40.0%
TCAGGAAACCTTGTAATCTC+AGG - chr7_4:44656069-44656088 None:intergenic 40.0%
TTGTAGGGAAAACTGTCATC+AGG - chr7_4:44656087-44656106 None:intergenic 40.0%
GGCGGATAATCTTCATTGTA+GGG - chr7_4:44656102-44656121 None:intergenic 40.0%
CTACAATGAAGATTATCCGC+CGG + chr7_4:44656101-44656120 Msa1156360:CDS 40.0%
ATGTAAAGATGACAGCCTAC+CGG - chr7_4:44656123-44656142 None:intergenic 40.0%
CGTATGGAGAAAGTTTGGTT+GGG - chr7_4:44656339-44656358 None:intergenic 40.0%
TTTCTCCATACGCAATAGTC+AGG + chr7_4:44656347-44656366 Msa1156360:intron 40.0%
TTCTCCATACGCAATAGTCA+GGG + chr7_4:44656348-44656367 Msa1156360:intron 40.0%
TCAAACCCCAAACCATTTGT+TGG + chr7_4:44656372-44656391 Msa1156360:intron 40.0%
TAGGGGACAAAACCAACAAA+TGG - chr7_4:44656387-44656406 None:intergenic 40.0%
AACAGTATATCAAGCAGGAG+TGG - chr7_4:44656478-44656497 None:intergenic 40.0%
TAAAACTGCATAGCAGCAGT+GGG - chr7_4:44656762-44656781 None:intergenic 40.0%
TTAAAACTGCATAGCAGCAG+TGG - chr7_4:44656763-44656782 None:intergenic 40.0%
GCGAGTTTGATGAGAAGAAT+GGG + chr7_4:44656960-44656979 Msa1156360:CDS 40.0%
CGAGTTTGATGAGAAGAATG+GGG + chr7_4:44656961-44656980 Msa1156360:CDS 40.0%
ATCTTACCCAGATACTCGAA+AGG - chr7_4:44657120-44657139 None:intergenic 40.0%
! AGTGATTTCCAGTGTGGTTT+TGG + chr7_4:44657232-44657251 Msa1156360:CDS 40.0%
! AACCATTTTACAGCATTCCC+TGG + chr7_4:44657268-44657287 Msa1156360:CDS 40.0%
TTCCAGGGAATGCTGTAAAA+TGG - chr7_4:44657273-44657292 None:intergenic 40.0%
GATTGTCTTTCATTGCCCAA+GGG - chr7_4:44657309-44657328 None:intergenic 40.0%
TATAGTCATGCTGAAACTCG+GGG - chr7_4:44657411-44657430 None:intergenic 40.0%
GTATAGTCATGCTGAAACTC+GGG - chr7_4:44657412-44657431 None:intergenic 40.0%
GGTATAGTCATGCTGAAACT+CGG - chr7_4:44657413-44657432 None:intergenic 40.0%
TTACAATCAGCACATGCGTA+AGG + chr7_4:44657438-44657457 Msa1156360:CDS 40.0%
GTCTCAACCATTGTCTTTCT+TGG + chr7_4:44657490-44657509 Msa1156360:CDS 40.0%
CTGGTTGTTCCATATGTTGT+AGG - chr7_4:44657521-44657540 None:intergenic 40.0%
TTTGTTCTTTGTGAAGTGGC+GGG - chr7_4:44657561-44657580 None:intergenic 40.0%
GTTGCTGTAATGGTTCTTGT+TGG + chr7_4:44657646-44657665 Msa1156360:CDS 40.0%
! GTGTTTGTTACATTAGTCGG+TGG + chr7_4:44657754-44657773 Msa1156360:CDS 40.0%
! ATTAGTCGGTGGACTTTCTA+TGG + chr7_4:44657765-44657784 Msa1156360:CDS 40.0%
! TTAGTCGGTGGACTTTCTAT+GGG + chr7_4:44657766-44657785 Msa1156360:CDS 40.0%
! TCTATGGGGTGGTATTGTTT+TGG + chr7_4:44657781-44657800 Msa1156360:CDS 40.0%
CATGATGAAACAGCAGATGC+TGG - chr7_4:44655356-44655375 Msa1156350:CDS 45.0%
CAAGCTGAGACAAAGAGAAG+AGG - chr7_4:44655410-44655429 None:intergenic 45.0%
CCGTGTTGAGTACTTGTTCA+AGG + chr7_4:44655614-44655633 Msa1156360:intron 45.0%
ACTTCAGACTTCATCCCTGT+AGG + chr7_4:44655940-44655959 Msa1156360:CDS 45.0%
TGCTGAAATACTTGCAACCG+GGG + chr7_4:44655993-44656012 Msa1156360:CDS 45.0%
GGGGAGGATGTGTTTACATT+TGG + chr7_4:44656012-44656031 Msa1156360:CDS 45.0%
CGGCGGATAATCTTCATTGT+AGG - chr7_4:44656103-44656122 None:intergenic 45.0%
AATGAAGATTATCCGCCGGT+AGG + chr7_4:44656105-44656124 Msa1156360:intron 45.0%
AATACGTGGCCCTAAACAGA+TGG - chr7_4:44656272-44656291 None:intergenic 45.0%
! GTTTTCCAAGGGAGAATACG+TGG - chr7_4:44656286-44656305 None:intergenic 45.0%
CGTATTCTCCCTTGGAAAAC+CGG + chr7_4:44656286-44656305 Msa1156360:CDS 45.0%
!! ATGTCCAACCGGTTTTCCAA+GGG - chr7_4:44656297-44656316 None:intergenic 45.0%
!! AATGTCCAACCGGTTTTCCA+AGG - chr7_4:44656298-44656317 None:intergenic 45.0%
GAAAACCGGTTGGACATTCA+AGG + chr7_4:44656300-44656319 Msa1156360:CDS 45.0%
ACTCACCTTGAATGTCCAAC+CGG - chr7_4:44656308-44656327 None:intergenic 45.0%
GCGTATGGAGAAAGTTTGGT+TGG - chr7_4:44656340-44656359 None:intergenic 45.0%
TGATCCCTGACTATTGCGTA+TGG - chr7_4:44656355-44656374 None:intergenic 45.0%
AAAACTGCATAGCAGCAGTG+GGG - chr7_4:44656761-44656780 None:intergenic 45.0%
! GGAGTGTTAGAAGGTAAGTG+AGG - chr7_4:44656786-44656805 None:intergenic 45.0%
!! TCAAGCATCGGAGTGTTAGA+AGG - chr7_4:44656795-44656814 None:intergenic 45.0%
!! CGTAGGAAGTGGGTTAAAAG+AGG - chr7_4:44656938-44656957 None:intergenic 45.0%
! CTTTTAACCCACTTCCTACG+TGG + chr7_4:44656938-44656957 Msa1156360:CDS 45.0%
GGCGAGTTTGATGAGAAGAA+TGG + chr7_4:44656959-44656978 Msa1156360:CDS 45.0%
AAAATGTTAGGAGTCGTCCG+TGG + chr7_4:44657092-44657111 Msa1156360:CDS 45.0%
CAGATACTCGAAAGGTTCCA+CGG - chr7_4:44657112-44657131 None:intergenic 45.0%
! GTGGAACCTTTCGAGTATCT+GGG + chr7_4:44657111-44657130 Msa1156360:CDS 45.0%
TTACAGCATTCCCTGGAAGT+AGG + chr7_4:44657275-44657294 Msa1156360:CDS 45.0%
AAGTAGGCTTCCAATCCCTT+GGG + chr7_4:44657291-44657310 Msa1156360:CDS 45.0%
TCTTTCATTGCCCAAGGGAT+TGG - chr7_4:44657304-44657323 None:intergenic 45.0%
CGATTGTCTTTCATTGCCCA+AGG - chr7_4:44657310-44657329 None:intergenic 45.0%
TGGATGACAATGAGCTGCAT+TGG + chr7_4:44657362-44657381 Msa1156360:CDS 45.0%
AAAATGGCCGCCTTTCTGTA+TGG + chr7_4:44657578-44657597 Msa1156360:CDS 45.0%
AAAACCGAACAACCCAAGCA+AGG - chr7_4:44657608-44657627 None:intergenic 45.0%
! TGTTTGTGCCGTTGCTGTAA+TGG + chr7_4:44657636-44657655 Msa1156360:CDS 45.0%
! TAGTCGGTGGACTTTCTATG+GGG + chr7_4:44657767-44657786 Msa1156360:CDS 45.0%
TGAAATACTTGCAACCGGGG+AGG + chr7_4:44655996-44656015 Msa1156360:CDS 50.0%
TAAAGATGACAGCCTACCGG+CGG - chr7_4:44656120-44656139 None:intergenic 50.0%
TTCTCCCTTGGAAAACCGGT+TGG + chr7_4:44656290-44656309 Msa1156360:CDS 50.0%
AAACTGCATAGCAGCAGTGG+GGG - chr7_4:44656760-44656779 None:intergenic 50.0%
AAACTCGCCACGTAGGAAGT+GGG - chr7_4:44656948-44656967 None:intergenic 50.0%
TCTCATCAAACTCGCCACGT+AGG - chr7_4:44656955-44656974 None:intergenic 50.0%
! CGTGGAACCTTTCGAGTATC+TGG + chr7_4:44657110-44657129 Msa1156360:CDS 50.0%
CTGCAGAGTGATTTCCAGTG+TGG + chr7_4:44657226-44657245 Msa1156360:intron 50.0%
GGCACTTTCCAAAACCACAC+TGG - chr7_4:44657243-44657262 None:intergenic 50.0%
GGATTGGAAGCCTACTTCCA+GGG - chr7_4:44657288-44657307 None:intergenic 50.0%
GAAGTAGGCTTCCAATCCCT+TGG + chr7_4:44657290-44657309 Msa1156360:CDS 50.0%
AGGAAACATGTTCACCCAGC+TGG + chr7_4:44657342-44657361 Msa1156360:CDS 50.0%
CAGCTCATTGTCATCCAGCT+GGG - chr7_4:44657359-44657378 None:intergenic 50.0%
AGGACGACCATACAGAAAGG+CGG - chr7_4:44657588-44657607 None:intergenic 50.0%
GCAAGGACGACCATACAGAA+AGG - chr7_4:44657591-44657610 None:intergenic 50.0%
TCTGTATGGTCGTCCTTGCT+TGG + chr7_4:44657592-44657611 Msa1156360:CDS 50.0%
CTGTATGGTCGTCCTTGCTT+GGG + chr7_4:44657593-44657612 Msa1156360:CDS 50.0%
! TCGTCCTTGCTTGGGTTGTT+CGG + chr7_4:44657601-44657620 Msa1156360:CDS 50.0%
TAGGGCCACGTATTCTCCCT+TGG + chr7_4:44656278-44656297 Msa1156360:CDS 55.0%
AACTGCATAGCAGCAGTGGG+GGG - chr7_4:44656759-44656778 None:intergenic 55.0%
CAAACTCGCCACGTAGGAAG+TGG - chr7_4:44656949-44656968 None:intergenic 55.0%
GGGATTGGAAGCCTACTTCC+AGG - chr7_4:44657289-44657308 None:intergenic 55.0%
GCAGCTCATTGTCATCCAGC+TGG - chr7_4:44657360-44657379 None:intergenic 55.0%
! CTTTGTGAAGTGGCGGGACA+TGG - chr7_4:44657555-44657574 None:intergenic 55.0%
! TCGGTGGACTTTCTATGGGG+TGG + chr7_4:44657770-44657789 Msa1156360:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44655351 44657834 44655351 ID=Msa1156360;Name=Msa1156360
chr7_4 mRNA 44655351 44657834 44655351 ID=Msa1156360-mRNA-1;Parent=Msa1156360;Name=Msa1156360-mRNA-1;_AED=0.20;_eAED=0.20;_QI=202|1|0.8|1|0.75|0.8|5|0|358
chr7_4 exon 44655351 44655551 44655351 ID=Msa1156360-mRNA-1:exon:11496;Parent=Msa1156360-mRNA-1
chr7_4 exon 44655927 44656122 44655927 ID=Msa1156360-mRNA-1:exon:11497;Parent=Msa1156360-mRNA-1
chr7_4 exon 44656250 44656321 44656250 ID=Msa1156360-mRNA-1:exon:11498;Parent=Msa1156360-mRNA-1
chr7_4 exon 44656926 44657132 44656926 ID=Msa1156360-mRNA-1:exon:11499;Parent=Msa1156360-mRNA-1
chr7_4 exon 44657232 44657834 44657232 ID=Msa1156360-mRNA-1:exon:11500;Parent=Msa1156360-mRNA-1
chr7_4 five_prime_UTR 44655351 44655551 44655351 ID=Msa1156360-mRNA-1:five_prime_utr;Parent=Msa1156360-mRNA-1
chr7_4 five_prime_UTR 44655927 44655927 44655927 ID=Msa1156360-mRNA-1:five_prime_utr;Parent=Msa1156360-mRNA-1
chr7_4 CDS 44655928 44656122 44655928 ID=Msa1156360-mRNA-1:cds;Parent=Msa1156360-mRNA-1
chr7_4 CDS 44656250 44656321 44656250 ID=Msa1156360-mRNA-1:cds;Parent=Msa1156360-mRNA-1
chr7_4 CDS 44656926 44657132 44656926 ID=Msa1156360-mRNA-1:cds;Parent=Msa1156360-mRNA-1
chr7_4 CDS 44657232 44657834 44657232 ID=Msa1156360-mRNA-1:cds;Parent=Msa1156360-mRNA-1
Gene Sequence

>Msa1156360

ATGGTTTTGGAAACTTCAGACTTCATCCCTGTAGGTGTTGCTTTGAAATTTTCAGACTCATATGATGCTGAAATACTTGCAACCGGGGAGGATGTGTTTACATTTGGAGAGACTGTTTCACGTATCCTTCAAAGGAAGCCTGAGATTACAAGGTTTCCTGATGACAGTTTTCCCTACAATGAAGATTATCCGCCGGTAAGAAGACATTTTCGATCCATCTGTTTAGGGCCACGTATTCTCCCTTGGAAAACCGGTTGGACATTCAAGGTATCATTTCCTCTTTTAACCCACTTCCTACGTGGCGAGTTTGATGAGAAGAATGGGGTTGCTGAAGCAAAACAAAGATTAGCTCAATATATAAGGAGCAAGCATGCTAACAAGAAAACTGAAATACAGTTTTGGTTGGATATAGAAGAAATATTATCTTGCTACAAAAATGTTAGGAGTCGTCCGTGGAACCTTTCGAGTATCTGGAGTGATTTCCAGTGTGGTTTTGGAAAGTGCCCACGAAACCATTTTACAGCATTCCCTGGAAGTAGGCTTCCAATCCCTTGGGCAATGAAAGACAATCGAATAAGCATTACAGGAAACATGTTCACCCAGCTGGATGACAATGAGCTGCATTGGTCTAATAGAAACATATCAAGAGACCCCGAGTTTCAGCATGACTATACCTATGATTACAATCAGCACATGCGTAAGGAAATCGTGCGATGTCTCTCATCTTTTGTAGTCTCAACCATTGTCTTTCTTGGTATTTCCTACAACATATGGAACAACCAGTTATCAATTATCCATGTCCCGCCACTTCACAAAGAACAAAATGGCCGCCTTTCTGTATGGTCGTCCTTGCTTGGGTTGTTCGGTTTTATGATGTTTGTTTGTGCCGTTGCTGTAATGGTTCTTGTTGGTGCACCATTCACTAGTATACAGAAAGCTATGCTTATCTTTTTGGCCATTTTGATGCATCTTCAATCAGCTAATTCAATCATCGAAGTGTTTGTTACATTAGTCGGTGGACTTTCTATGGGGTGGTATTGTTTTGGAAAAAAGCAACCACCAAATGAAGTGATATGA

Protein sequence

>Msa1156360

MVLETSDFIPVGVALKFSDSYDAEILATGEDVFTFGETVSRILQRKPEITRFPDDSFPYNEDYPPVRRHFRSICLGPRILPWKTGWTFKVSFPLLTHFLRGEFDEKNGVAEAKQRLAQYIRSKHANKKTEIQFWLDIEEILSCYKNVRSRPWNLSSIWSDFQCGFGKCPRNHFTAFPGSRLPIPWAMKDNRISITGNMFTQLDDNELHWSNRNISRDPEFQHDYTYDYNQHMRKEIVRCLSSFVVSTIVFLGISYNIWNNQLSIIHVPPLHKEQNGRLSVWSSLLGLFGFMMFVCAVAVMVLVGAPFTSIQKAMLIFLAILMHLQSANSIIEVFVTLVGGLSMGWYCFGKKQPPNEVI*